Citrus Sinensis ID: 017492
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.989 | 0.997 | 0.907 | 0.0 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.994 | 0.997 | 0.885 | 0.0 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.989 | 0.997 | 0.883 | 0.0 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.967 | 0.972 | 0.860 | 0.0 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.997 | 1.0 | 0.856 | 0.0 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.997 | 1.0 | 0.856 | 0.0 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.975 | 0.866 | 0.0 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.975 | 0.866 | 0.0 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.980 | 0.819 | 1e-172 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.980 | 0.819 | 1e-172 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/368 (90%), Positives = 354/368 (96%), Gaps = 2/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 363 LPRPVPRL 370
PRP RL
Sbjct: 361 -PRPSARL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/368 (88%), Positives = 348/368 (94%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 363 LPRPVPRL 370
R V RL
Sbjct: 362 SSRAVARL 369
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Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/368 (88%), Positives = 351/368 (95%), Gaps = 2/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKD++WLQTIT +PILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 302 ASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDT- 360
Query: 363 LPRPVPRL 370
PR +PRL
Sbjct: 361 -PRHLPRL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/358 (86%), Positives = 339/358 (94%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAEDARIA
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/370 (85%), Positives = 346/370 (93%), Gaps = 1/370 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 361 ASLPRPVPRL 370
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/370 (85%), Positives = 346/370 (93%), Gaps = 1/370 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 361 ASLPRPVPRL 370
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/360 (86%), Positives = 342/360 (95%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/360 (86%), Positives = 342/360 (95%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/360 (81%), Positives = 326/360 (90%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/360 (81%), Positives = 326/360 (90%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.994 | 0.991 | 0.910 | 0.0 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.991 | 0.994 | 0.901 | 0.0 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 1.0 | 1.0 | 0.921 | 0.0 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.994 | 0.997 | 0.921 | 0.0 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.994 | 0.991 | 0.911 | 0.0 | |
| 225462096 | 371 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.994 | 0.991 | 0.913 | 0.0 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.997 | 0.910 | 0.0 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.997 | 0.915 | 0.0 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.994 | 0.991 | 0.913 | 0.0 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.989 | 0.997 | 0.913 | 0.0 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/370 (91%), Positives = 356/370 (96%), Gaps = 2/370 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 363 LP--RPVPRL 370
P RP+PRL
Sbjct: 362 HPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/367 (90%), Positives = 352/367 (95%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243
F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITK+PILVKGV+TAED R+A+
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 363
+GIFIGRPVV SLAAEGE GVR+VL+MLR+EFEL MALSGC SLKEITRDHIVTEWDA
Sbjct: 303 AGIFIGRPVVLSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKEITRDHIVTEWDAPK 362
Query: 364 PRPVPRL 370
RP PRL
Sbjct: 363 ARPAPRL 369
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/370 (92%), Positives = 359/370 (97%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
L+NF+GLDLGKMD+ANDSGLA+YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+A+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASGIFIGRPVV+SLAA+GE G+R+ L+MLR+EFEL MALSGCRSLKEITRDHIVT+WD
Sbjct: 301 LGASGIFIGRPVVFSLAADGEAGIRKALQMLRDEFELTMALSGCRSLKEITRDHIVTDWD 360
Query: 361 ASLPRPVPRL 370
PR PRL
Sbjct: 361 LPQPRIAPRL 370
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/368 (92%), Positives = 358/368 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR+A
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+M+REEFEL MALSGC SLKEITR+HI+T+WDA
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMMREEFELTMALSGCTSLKEITRNHIITDWDAP 361
Query: 363 LPRPVPRL 370
R VP+L
Sbjct: 362 QARLVPKL 369
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/373 (91%), Positives = 359/373 (96%), Gaps = 5/373 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT LPILVKGVLTAEDAR
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AVQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASGIFIGRPVV+SLAAEGE G+++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 301 LGASGIFIGRPVVFSLAAEGEAGIKKVLQMLRDEFELTMALSGCRSLNEITRNHIVTEWD 360
Query: 361 ASLPR---PVPRL 370
A PR P PRL
Sbjct: 361 A--PRAALPAPRL 371
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462096|ref|XP_002277249.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|296086772|emb|CBI32921.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/370 (91%), Positives = 357/370 (96%), Gaps = 2/370 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 363 LP--RPVPRL 370
P RP+PRL
Sbjct: 362 PPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/368 (91%), Positives = 356/368 (96%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT+LPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHP 361
Query: 363 LPRPVPRL 370
R P+L
Sbjct: 362 RARLAPKL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/368 (91%), Positives = 354/368 (96%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A DSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITR HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHP 361
Query: 363 LPRPVPRL 370
L R PRL
Sbjct: 362 LNRLAPRL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/370 (91%), Positives = 356/370 (96%), Gaps = 2/370 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTITKLPILVKGVLTAED RIA
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA- 361
ASGIFIGRPVV+SLAAEGE GVR VL MLREEFEL MALSGC SLK+ITRDHIVT+WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQP 361
Query: 362 -SLPRPVPRL 370
++PR +PRL
Sbjct: 362 RTIPRALPRL 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/368 (91%), Positives = 355/368 (96%), Gaps = 2/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVE+VASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GL+LGKMD+ +DSGLA+YVAGQIDRSLSWKDVKWLQTIT LPILVKGVL AEDAR+A
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEITR+HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVADWDQ- 360
Query: 363 LPRPVPRL 370
PR VPRL
Sbjct: 361 -PRVVPRL 367
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.989 | 0.997 | 0.847 | 2.4e-163 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 1.0 | 0.802 | 3.8e-156 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 1.0 | 0.802 | 3.8e-156 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.975 | 0.813 | 2.1e-155 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.975 | 0.813 | 2.1e-155 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.967 | 0.972 | 0.804 | 1.7e-153 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.972 | 0.770 | 1.2e-145 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.972 | 0.770 | 1.2e-145 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.978 | 0.666 | 3.2e-129 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.978 | 0.666 | 3.2e-129 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1590 (564.8 bits), Expect = 2.4e-163, P = 2.4e-163
Identities = 312/368 (84%), Positives = 331/368 (89%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
SNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 363 LPRPVPRL 370
PRP RL
Sbjct: 361 -PRPSARL 367
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 297/370 (80%), Positives = 324/370 (87%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 361 ASLPRPVPRL 370
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 297/370 (80%), Positives = 324/370 (87%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 361 ASLPRPVPRL 370
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 293/360 (81%), Positives = 321/360 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 293/360 (81%), Positives = 321/360 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
Identities = 288/358 (80%), Positives = 318/358 (88%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE GTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 242
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 243 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
SNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
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| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 275/357 (77%), Positives = 303/357 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXX 243
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 244 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
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| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 275/357 (77%), Positives = 303/357 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXX 243
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 244 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
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| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 240/360 (66%), Positives = 284/360 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
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| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 240/360 (66%), Positives = 284/360 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5943 | 0.9540 | 0.9644 | N/A | no |
| B2FIJ0 | LLDD_STRMK | 1, ., 1, ., 2, ., 3 | 0.3706 | 0.9567 | 0.9340 | yes | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.5260 | 0.9540 | 0.9097 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.9076 | 0.9891 | 0.9972 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7138 | 0.9729 | 0.9782 | N/A | no |
| B7M492 | LLDD_ECO8A | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| P20932 | MDLB_PSEPU | 1, ., 1, ., 9, 9, ., 3, 1 | 0.3733 | 0.9540 | 0.8982 | yes | no |
| B7L725 | LLDD_ECO55 | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| Q87G18 | LLDD_VIBPA | 1, ., 1, ., 2, ., 3 | 0.3582 | 0.9540 | 0.9313 | yes | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8194 | 0.9729 | 0.9809 | N/A | no |
| Q3YVX0 | LLDD_SHISS | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| B7NER0 | LLDD_ECOLU | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| A7IMB0 | LLDD_XANP2 | 1, ., 1, ., 2, ., 3 | 0.3669 | 0.9783 | 0.9329 | yes | no |
| A7MNF6 | LLDD_CROS8 | 1, ., 1, ., 2, ., 3 | 0.3663 | 0.9540 | 0.8802 | yes | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8666 | 0.9729 | 0.9756 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8666 | 0.9729 | 0.9756 | no | no |
| Q7XPR4 | GLO2_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7138 | 0.9729 | 0.9782 | no | no |
| B7LTL2 | LLDD_ESCF3 | 1, ., 1, ., 2, ., 3 | 0.3624 | 0.9648 | 0.9015 | yes | no |
| Q0SYD1 | LLDD_SHIF8 | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| B1LK44 | LLDD_ECOSM | 1, ., 1, ., 2, ., 3 | 0.3641 | 0.9513 | 0.8888 | yes | no |
| A8A670 | LLDD_ECOHS | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8603 | 0.9675 | 0.9728 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8567 | 0.9972 | 1.0 | yes | no |
| B1IZI5 | LLDD_ECOLC | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8831 | 0.9891 | 0.9972 | yes | no |
| B6I3I4 | LLDD_ECOSE | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8567 | 0.9972 | 1.0 | N/A | no |
| B1X8M0 | LLDD_ECODH | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| Q83PP7 | LLDD_SHIFL | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| A1AHE2 | LLDD_ECOK1 | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.5828 | 0.9351 | 0.9351 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8194 | 0.9729 | 0.9809 | no | no |
| Q6DAY3 | LLDD_ERWCT | 1, ., 1, ., 2, ., 3 | 0.3743 | 0.9540 | 0.9145 | yes | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.8858 | 0.9945 | 0.9972 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4589 | 0.9324 | 0.9773 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5665 | 0.9432 | 0.9432 | yes | no |
| B2U5C2 | LLDD_SHIB3 | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| Q329P9 | LLDD_SHIDS | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| C4ZXJ7 | LLDD_ECOBW | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
| B5YWA7 | LLDD_ECO5E | 1, ., 1, ., 2, ., 3 | 0.3610 | 0.9675 | 0.9040 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.998 |
| 3rd Layer | 1.1.3.15 | 0.993 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_202808.1 | annotation not avaliable (369 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.3__3006__AT2G13360.2 | annotation not avaliable (401 aa) | • | • | • | • | 0.448 | ||||
 | Al_scaffold_0006_297 | Malate synthase Fragment (EC 2.3.3.9) (562 aa) | • | • | 0.431 | ||||||
 | fgenesh2_kg.6__602__AT5G06580.1 | annotation not avaliable (566 aa) | • | • | • | 0.421 | |||||
 | fgenesh2_kg.3__2397__AT3G21720.1 | annotation not avaliable (576 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 370 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 0.0 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 0.0 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-169 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-168 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-140 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-127 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 1e-120 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-118 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 1e-102 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 1e-90 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 6e-87 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 1e-80 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 6e-23 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 2e-16 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 4e-14 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 9e-10 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 1e-09 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 1e-07 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 9e-07 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 2e-06 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 7e-06 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 2e-05 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 3e-05 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 4e-05 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 6e-05 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 7e-05 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 8e-05 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 1e-04 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 2e-04 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 2e-04 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 4e-04 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 5e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.002 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 0.002 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Score = 649 bits (1675), Expect = 0.0
Identities = 334/368 (90%), Positives = 354/368 (96%), Gaps = 2/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 363 LPRPVPRL 370
PRP RL
Sbjct: 361 -PRPSARL 367
|
Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 595 bits (1535), Expect = 0.0
Identities = 294/323 (91%), Positives = 310/323 (95%), Gaps = 2/323 (0%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLS
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 108 SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167
SW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 227
DIKNRFTLPP LTLKNF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287
ILVKGVLT EDARIA+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 288 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 347
GVRRGTDVFKALALGASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSL
Sbjct: 286 GVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSL 345
Query: 348 KEITRDHIVTEWDASLPRPVPRL 370
KEI+R+HI TEWD PRP RL
Sbjct: 346 KEISRNHITTEWDT--PRPSARL 366
|
Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 534 bits (1378), Expect = 0.0
Identities = 232/360 (64%), Positives = 283/360 (78%), Gaps = 3/360 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM LS ++ +VEEVAS+
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
+RF QLYVYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL ++ SGL A+ + D SLSWKD++WL++IT LPIL+KGVLT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
AV+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
LGA + +GRPV+Y LAA+GE GVR+V+EML++E E+ MALSGC S+K+ITR H+ TE +
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERE 358
|
Length = 364 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 472 bits (1218), Expect = e-169
Identities = 181/344 (52%), Positives = 223/344 (64%), Gaps = 46/344 (13%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
K++MP IAPT +Q +AHP+GE ATARAA+AAG TLS+ ST+S+EEVA+ PG R+FQ
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188
LYV +DR + L+RRAE AG+KA+ LTVDTP LGRR
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------------- 158
Query: 189 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA 248
L+W D+ WL++ K P+++KG+LT EDA AV AGA
Sbjct: 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195
Query: 249 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308
GI+VSNHG RQLD PATI AL E+V A GRI V LDGG+RRGTDV KALALGA + I
Sbjct: 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255
Query: 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352
GRP +Y LAA GE GV VLE+LR+E E AMAL GC SL ++
Sbjct: 256 GRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-168
Identities = 169/344 (49%), Positives = 217/344 (63%), Gaps = 42/344 (12%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133
IAPT MQ +AHP+GE A ARAA+AAG LS+ S++S+EEVA+ G +FQLYV K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR----------------------- 157
Query: 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253
+W D+ WL+ K P++VKG+L+ EDA+ AV+AG GI+VS
Sbjct: 158 -------------------TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVS 198
Query: 254 NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313
NHG RQLD PATI AL E+V A GRIPV +DGG+RRGTDV KALALGA + +GRP +
Sbjct: 199 NHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFL 258
Query: 314 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357
Y LAA GE GV LE+LR+E E MAL GC S+ ++T +
Sbjct: 259 YGLAAGGEAGVAHALEILRDELERTMALLGCTSIADLTPSLLRR 302
|
Length = 302 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 401 bits (1034), Expect = e-140
Identities = 161/347 (46%), Positives = 225/347 (64%), Gaps = 12/347 (3%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV--ASTGPGIRF 126
K+S+P I+P A+ K+AHP+GE ARAA G + +S+ ++ S+EE+ A F
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLYV KDR +L++RAE+ G KAI LTVD P LG+RE D + +
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV-------SD 174
Query: 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG 246
GK +A G ++G ID +L+W D+KWL+ TKLPI++KGV T EDA +A + G
Sbjct: 175 GPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG 234
Query: 247 AAGIIVSNHGARQLDYVPATIMALEEVVK-ATQ--GRIPVFLDGGVRRGTDVFKALALGA 303
GI++SNHG RQLD PA I L E+ K + +I V++DGGVRRGTDV KAL LGA
Sbjct: 235 VDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGA 294
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 350
+ +GRP +Y+L+A GE+GV + +++L++E E M L G SL ++
Sbjct: 295 KAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 368 bits (946), Expect = e-127
Identities = 157/356 (44%), Positives = 208/356 (58%), Gaps = 13/356 (3%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G K+S PI+IAP +AHPEGE A+ A+AAG LS+ + +EEVA+ P
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP---- 115
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLY KDR LV RA AG K + LTVD+P G RE D N + P N
Sbjct: 116 FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNV-- 173
Query: 187 LDLGKMDEANDSG------LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
L E + G +A YV+ +S +D + P+++KG+L EDA
Sbjct: 174 LQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAA 233
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
A GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALA
Sbjct: 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALA 293
Query: 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356
LGA + IGRP +Y LAA GE GV RVLE++R+E ++AMAL+G ++++E+ R +V
Sbjct: 294 LGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349
|
Length = 360 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 351 bits (904), Expect = e-120
Identities = 152/367 (41%), Positives = 222/367 (60%), Gaps = 18/367 (4%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPG 123
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G LS+ S+SS+E+VA + G
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT--- 180
R+FQLY KD ++ L+RRAE+AG++ + +T+DT LG R D+ + PFL
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL--PFLRGIG 196
Query: 181 LKNF-------QGLD--LGKMDEANDSGLAA---YVAGQIDRSLSWKDVKWLQTITKLPI 228
+ N+ + L +G+ EA AA +V+ SL+W+D+ +L+ T LPI
Sbjct: 197 IANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256
Query: 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288
++KG+L +DAR AV+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 289 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 348
VR G D+ KALALGA + IGRP Y LA GE GV VL L E +L M L+G RS+
Sbjct: 317 VRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIA 376
Query: 349 EITRDHI 355
E+TRD +
Sbjct: 377 ELTRDAL 383
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 346 bits (889), Expect = e-118
Identities = 148/351 (42%), Positives = 214/351 (60%), Gaps = 7/351 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG K+ PI++AP A +AH GE ATAR + G++ ++S++S +S+EE+A
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G ++FQLY+ KD L+ RA+ AG KAI LT D G READI+N+F P +
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFP--FGM 181
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241
N G S + + LS D++++ I+ LP++VKG+ + EDA +
Sbjct: 182 PNLNHFSEGTGKGKGIS----EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A+ AGA GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA
Sbjct: 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALAS 297
Query: 302 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352
GA + +GRPV+Y LA G +GV VLE L +E ++ M L+G R+++++ R
Sbjct: 298 GADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = e-102
Identities = 153/363 (42%), Positives = 219/363 (60%), Gaps = 22/363 (6%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
S P++IAPT + P G+ A ARAA+ AG LS+ S S+E+VA G +FQ
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------ 176
LYV R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGI 180
Query: 177 --PFLTLKNFQGLDLGK----MDEANDSGL-AAYVAGQIDRSLSWKDVKWLQTITKLPIL 229
P L+ + D+A D + AA ++ Q+D S +W+D++WL+ + +L
Sbjct: 181 LHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240
Query: 230 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289
VKG++TAEDA+ ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+
Sbjct: 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGI 298
Query: 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 349
RRG+D+ KALALGA+ + +GR +Y LAA GE GV VL +L+EE + +AL GC +
Sbjct: 299 RRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIAS 358
Query: 350 ITR 352
+T
Sbjct: 359 LTP 361
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 276 bits (709), Expect = 1e-90
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 21/374 (5%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+ G K+SMP+ +AP + M GE ARAA A G TLS+ S +EEVA
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQLYV +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 184 FQGL-------DLGKMDEAND-----------SGLAAYVA---GQIDRSLSWKDVKWLQT 222
Q + D+G +D +GL Y+ D S+SWKD++W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282
P+++KG+L EDAR AV+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 342
+ D G+R G DV + +ALGA + +GR VY+LAA G+ GV +L+++ +E +AM L+
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLT 362
Query: 343 GCRSLKEITRDHIV 356
G +S+ EITRD +V
Sbjct: 363 GAKSISEITRDSLV 376
|
Length = 381 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 6e-87
Identities = 135/354 (38%), Positives = 197/354 (55%), Gaps = 18/354 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-ASTG 121
LG K+ P ++AP A K+A+ +GE ATAR S G+I T SS+ST+ + E+ +
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
+FQ Y+ KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 179 LT--LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+ L G + V + LS +D++ + + LP+ VKG
Sbjct: 192 VQEYLPTGAGKSMD------------NVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCP 239
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296
EDA A++AGA+GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VF
Sbjct: 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF 299
Query: 297 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 350
KALA GA + +GRPV+Y LA G +G R+V E L +E + M L+G ++++++
Sbjct: 300 KALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDV 353
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 1e-80
Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 27/374 (7%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M LSS+++ VEEV + P F
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKT-F 125
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLP 176
FQ+Y R+ + + RA AG K + LT+D +P + + D++
Sbjct: 126 FQIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEK-IDLRTMLRFA 184
Query: 177 PFLTLK--------------NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222
P + ++ + +L E + AY +W+DV WL+
Sbjct: 185 PEVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLRE 244
Query: 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282
P ++KG+ +DAR AV AGA I VSNHG LD PA I AL + +A ++
Sbjct: 245 QWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVE 304
Query: 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 342
V LDGG+RRG+DV KALALGA + IGR ++ LAA GE GV VL++LR+ + A+
Sbjct: 305 VLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQGIDSALLGL 364
Query: 343 GCRSLKEITRDHIV 356
G S+ E++R+ +V
Sbjct: 365 GKASVHELSREDLV 378
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 6e-23
Identities = 89/368 (24%), Positives = 141/368 (38%), Gaps = 88/368 (23%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMTLSS-----------WSTSSVEEVASTGP---GIRFFQLY 130
E ARAA G M + S + V E A GP I QL
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQL- 125
Query: 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDL 189
V + + E A+A+ ++ + L + E D +NF+G L
Sbjct: 126 VEGGPEEAQEAIDMIEA---DALAIHLNVLQELVQPEGD-------------RNFKGW-L 168
Query: 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAG 246
K+ E + Q+ +P++VK V ++ E A++ AG
Sbjct: 169 EKIAE---------ICSQLS----------------VPVIVKEVGFGISKEVAKLLADAG 203
Query: 247 AAGIIVSNHG---------ARQLDYVPA---------TIMALEEVVKATQGRIPVFLDGG 288
+ I V+ G R A T +L EV ++ P+ GG
Sbjct: 204 VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-RSDAPDAPIIASGG 262
Query: 289 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 348
+R G DV KA+ALGA + + RP + + EGE+ V +E++ EE ++AM L+G +++
Sbjct: 263 LRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIA 322
Query: 349 EITRDHIV 356
E+ + +V
Sbjct: 323 ELKKVPLV 330
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 219 WLQTITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 260
WL I ++ P++VK V ++ E A+ AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 261 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311
D A T +L E ++ +P+ GG+R G D+ KALALGA + + P
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292
Query: 312 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352
+ + GE+ V ++E EE ++AM L+G +++ E+ +
Sbjct: 293 FLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
|
Length = 352 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-14
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 225 KLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQLDYVPA------- 265
+P++VK V ++ E A+ AG I V+ G R D
Sbjct: 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237
Query: 266 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321
T +L EV ++ +P+ GG+R G D+ KALALGA + + P + A EGE
Sbjct: 238 WGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFL-KAALEGE 295
Query: 322 KGVRRVLEMLREEFELAMALSGCRSLKEITR 352
+ V +E + EE AM L+G ++L E+ +
Sbjct: 296 EAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-10
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)
Query: 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD----- 193
+L + A AG AI + + E D K T G+ L D
Sbjct: 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDAAAAV 73
Query: 194 --------EANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARI-AV 243
A G+ + A + ++ L + + + ++VK T E A A
Sbjct: 74 DIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAE 133
Query: 244 QAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
+AG + + N G D VP + L + + ++PV GG+ D +ALAL
Sbjct: 134 EAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALAL 191
Query: 302 GASGIFIGR 310
GA G+ +G
Sbjct: 192 GADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 53/191 (27%), Positives = 71/191 (37%), Gaps = 54/191 (28%)
Query: 217 VKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV-- 263
++ L+ T PI VK G + A AGA I + GA L D+V
Sbjct: 205 IEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGL 264
Query: 264 PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318
P T + L +A R+ + GG+R G DV KALALGA + IG +L A
Sbjct: 265 P-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA---ALIA 320
Query: 319 EG-----------------------------EKGVRRV---LEMLREEFELAMALSGCRS 346
G E RV L+ L EE A G RS
Sbjct: 321 LGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRS 380
Query: 347 LKEITRDHIVT 357
L+ + R ++
Sbjct: 381 LELLGRSDLLA 391
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 233 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 286
V + E+AR A AGA ++ H AL EV A IPV
Sbjct: 109 VTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAA 162
Query: 287 GGVRRGTDVFKALALGASGIFIG 309
GG+ G + ALALGA G+ +G
Sbjct: 163 GGIADGRGIAAALALGADGVQMG 185
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGAR--------QLDY 262
+K++ + + ++ V+TAE AR + AGA G+ V S R Q
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ--- 182
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 311
AT A+ +V A + +PV DGG+R D+ KALA GA + +G
Sbjct: 183 --AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 28/119 (23%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 251
ID +K + +T L I+ V TAE A+ + AGA G+ I
Sbjct: 251 YVIDS------IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304
Query: 252 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
V+ G Q I A+ +V + IPV DGG+R D+ KALA GA + +G
Sbjct: 305 VAGVGVPQ-------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 7e-06
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 226 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV-------PATIM----ALEEVV 274
+P++ GV A ++ GAAG+IV GA V I A + +
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYL 248
Query: 275 KATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321
T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 249 DETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR 296
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 37/171 (21%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED------ARIAVQAGAAGIIVSNHGARQL 260
D L K ++ ++ TK+P+ VK L A+ A +AGA G+I N +
Sbjct: 143 GQDPELLEKLLEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200
Query: 261 DYVPATIM---------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299
T + E+ K G IP+ GG+ G D + +
Sbjct: 201 KIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFI 260
Query: 300 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 350
GAS + +G ++Y +G V+ +++ L + G S+++I
Sbjct: 261 LAGASAVQVGTALIY----KGPGIVKEIIKGLAR----WLEEKGFESIQDI 303
|
Length = 310 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
V+ + + I+ V TAE AR ++AGA + IV+ G Q
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ--- 316
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+ + +A + IPV DGG+R D+ KALA GAS + +G
Sbjct: 317 ----ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
|
Length = 486 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 227 PILVKGVLTAEDARIAVQAGAAGIIV--------SNHGARQLDYVP-AT-IM----ALEE 272
P++V G +T A ++ GAAG++V ++ G + VP AT I A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 273 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320
+ T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 35/166 (21%)
Query: 215 KDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIM 268
+D P+LVK L+ ED A +A+ G G+I+SN + D V
Sbjct: 252 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPH 311
Query: 269 A------------------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310
A L E+ + T+G+IP+ GGV G D +K + GAS +
Sbjct: 312 ADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLV---- 367
Query: 311 PVVYS-LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE-ITRDH 354
+Y+ A EG + R ++ E + G +S++E + DH
Sbjct: 368 -QLYTAFAYEGPALIPR----IKAELAACLERDGFKSIQEAVGADH 408
|
Length = 409 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 232 GVLTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDG 287
V+T +A A +AGA +I A R + + AL EVV A G IPV G
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAG 191
Query: 288 GVRRGTDVFKALALGASGIFIG 309
G+ G + ALALGA G+ +G
Sbjct: 192 GIADGRGIAAALALGADGVQMG 213
|
Length = 336 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+K L++ + I+ V+TA+ A+ + AGA G+ V G Q
Sbjct: 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQAS- 331
Query: 263 VPATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310
A+ V + A + +P DGG++ D+ KALALGA + +G
Sbjct: 332 ------AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374
|
Length = 495 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 49/193 (25%), Positives = 67/193 (34%), Gaps = 60/193 (31%)
Query: 217 VKWLQTITKL-PILVK-----GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV 263
+K L+ I VK GV T A +AGA I + GA L D+
Sbjct: 294 IKDLKEANPWAKISVKLVAEHGVGTI--AAGVAKAGADVITIDGADGGTGASPLTSIDHA 351
Query: 264 --PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316
P + L E + ++ + DGG+R G DV KA ALGA + G +L
Sbjct: 352 GIP-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA---AL 407
Query: 317 AAEG-----------------------------EKGVRRVLE----MLREEFELAMALSG 343
A G E RV+ + E EL +A G
Sbjct: 408 VALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL-LAALG 466
Query: 344 CRSLKEITRDHIV 356
RSL E+ +
Sbjct: 467 KRSLSELIGRTDL 479
|
Length = 485 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 227 PILVKGVLTAEDARIAVQAGAAG-----IIVSNH----GARQL---DYVPA-TIMALEEV 273
PI VK L + + AG A I++ H GA + +AL EV
Sbjct: 204 PISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEV 261
Query: 274 VKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316
+ + R+ + DGG+R G DV KA ALGA ++IG + +L
Sbjct: 262 HQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIAL 309
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+KW+ + +L ++ V+TAE AR + AGA + V+ G QL
Sbjct: 255 IKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQL-- 312
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 310
A+ EV A + +PV DGG+R D+ KALA GAS + +G
Sbjct: 313 -----TAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285
++ V +A++AR A AGA ++ G +V T L V IPV
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDAVD-IPVIA 197
Query: 286 DGGVRRGTDVFKALALGASGIFIG 309
GG+ G + ALALGA G+ IG
Sbjct: 198 AGGIADGRGIAAALALGAEGVQIG 221
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 225 KLPILVK---GV-----LTAEDARIAVQAGAAGIIVSNHG-ARQLDY-VPATIMALEEVV 274
+P+ VK G L E ARI AGA + V HG R Y PA ++E+
Sbjct: 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELK 193
Query: 275 KATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP----------VVYSLAAEGEK- 322
+A IPV +G ++ D + L GA G+ IGR + Y E
Sbjct: 194 EAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPP 252
Query: 323 GVRRVLEMLREEFELAMALSGCRSLKEITR 352
+ VL++LRE EL + G + L+ + +
Sbjct: 253 TLAEVLDILREHLELLLEYYGKKGLRRLRK 282
|
Length = 323 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 239 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296
A+ AGA+ + V HG Q PA + E+ +A IPV +G + D
Sbjct: 144 AKALEDAGASALTV--HGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDAL 199
Query: 297 KALAL-GASGIFIGR 310
+ L G G+ IGR
Sbjct: 200 RCLEQTGVDGVMIGR 214
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 100.0 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 100.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 100.0 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.97 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.97 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.96 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.95 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.95 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.94 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.94 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.92 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.92 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.91 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.91 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.89 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.89 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.88 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.88 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.88 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.87 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.87 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.86 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.86 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.86 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.86 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.85 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.85 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.84 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.84 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.84 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.84 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.83 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.83 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.83 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.83 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.82 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.79 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.78 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.77 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.77 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.77 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.76 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.75 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.74 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.71 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.71 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.69 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.69 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.68 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.66 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.64 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.62 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.59 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.54 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.51 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.43 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.38 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.35 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.35 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.31 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.23 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.21 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.18 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.18 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.14 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.14 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.08 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.05 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.04 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.04 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 99.03 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.01 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.0 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.0 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.98 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.96 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.94 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.94 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.93 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.9 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.89 | |
| PLN02591 | 250 | tryptophan synthase | 98.86 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 98.82 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.78 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.76 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.73 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.72 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.69 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.68 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.68 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.67 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.67 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 98.64 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.62 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.62 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.62 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 98.62 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.59 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.55 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.5 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.49 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.49 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.48 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.48 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.47 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.46 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.45 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.44 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.44 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.43 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.43 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.42 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.41 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.4 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.4 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 98.39 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.38 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.35 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.34 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.33 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.33 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.31 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.28 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.27 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.24 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.24 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.22 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.21 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.21 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.2 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.2 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.18 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.18 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.17 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.14 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.09 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.09 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.09 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.08 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 98.08 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.08 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 98.06 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 98.06 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.06 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.05 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.04 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.04 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.03 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.03 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.02 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.0 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.0 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.98 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.97 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.97 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.94 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 97.94 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.93 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.92 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.92 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.91 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.9 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.86 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.85 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 97.83 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.81 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.81 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.8 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.77 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.76 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.76 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.75 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.75 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.75 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.74 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.74 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.72 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.72 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 97.71 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.7 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.7 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.7 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.67 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.67 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.64 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.64 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 97.63 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.63 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.63 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.61 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.61 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.59 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.59 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.58 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.56 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.54 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.51 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.49 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.48 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.46 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.45 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.43 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.4 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.4 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.39 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.39 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.38 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.37 | |
| PRK08005 | 210 | epimerase; Validated | 97.36 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.35 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.35 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.34 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.31 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.3 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.29 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.28 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.27 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.24 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 97.24 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.24 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.22 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.22 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.21 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.21 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.21 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.2 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 97.2 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.19 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.19 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.18 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.18 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.11 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.1 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.09 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.09 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 97.08 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 97.08 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.04 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.0 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.0 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.99 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.96 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 96.95 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.94 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.91 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 96.89 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.88 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.88 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.87 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.83 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 96.81 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.8 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.8 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.79 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.77 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.77 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.76 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.72 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.71 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 96.71 | |
| PRK06852 | 304 | aldolase; Validated | 96.71 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.67 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 96.66 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.62 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 96.61 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.6 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.6 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.59 | |
| PRK14057 | 254 | epimerase; Provisional | 96.58 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.57 | |
| PLN02591 | 250 | tryptophan synthase | 96.56 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.55 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 96.54 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 96.52 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.5 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 96.49 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.49 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 96.46 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.44 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 96.43 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 96.4 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.4 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.4 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 96.31 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 96.27 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 96.25 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.24 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 96.21 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 96.21 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.19 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.16 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 96.12 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.1 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 96.09 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.02 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 96.0 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 95.99 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.94 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 95.92 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 95.9 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.87 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.84 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 95.81 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 95.73 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 95.72 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 95.64 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 95.62 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 95.61 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.61 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 95.58 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 95.56 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.56 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.54 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 95.54 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.51 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 95.49 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.48 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 95.44 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 95.38 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.35 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 95.32 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 95.26 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 95.19 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 95.18 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.18 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.11 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.11 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.07 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 95.06 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.05 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 95.04 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 95.01 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.98 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 94.97 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 94.97 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.93 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 94.89 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 94.89 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 94.88 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 94.88 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 94.84 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 94.8 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.78 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 94.75 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 94.73 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.73 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 94.71 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.7 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 94.69 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 94.64 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.6 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 94.58 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 94.58 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 94.55 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 94.54 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.45 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 94.45 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.39 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.36 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.36 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 94.35 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.28 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 94.26 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.25 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 94.22 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 94.12 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 94.01 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 94.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 93.95 | |
| COG0176 | 239 | MipB Transaldolase [Carbohydrate transport and met | 93.94 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 93.88 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 93.88 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 93.81 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 93.8 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 93.78 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 93.77 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 93.74 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 93.73 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 93.68 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 93.63 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 93.62 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 93.62 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 93.55 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.53 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 93.52 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 93.51 | |
| PLN02979 | 366 | glycolate oxidase | 93.5 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.5 | |
| cd00957 | 313 | Transaldolase_TalAB Transaldolases including both | 93.48 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.46 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.39 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 93.36 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.34 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 93.34 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.33 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 93.33 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 93.33 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 93.31 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.3 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 93.28 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 93.28 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.21 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 93.21 | |
| PRK12346 | 316 | transaldolase A; Provisional | 93.2 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 93.17 | |
| PLN02535 | 364 | glycolate oxidase | 93.15 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.14 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 93.1 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 93.0 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 92.99 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 92.93 | |
| TIGR00874 | 317 | talAB transaldolase. This family includes the majo | 92.9 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 92.88 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 92.87 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.84 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 92.77 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 92.71 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.61 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 92.6 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 92.49 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 92.48 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.46 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.35 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 92.26 | |
| PRK05269 | 318 | transaldolase B; Provisional | 92.22 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.14 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 92.14 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 92.05 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 92.05 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 92.02 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 91.99 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 91.92 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 91.82 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.74 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 91.67 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 91.66 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 91.61 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 91.44 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 91.43 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 91.27 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 91.19 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 91.03 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 90.88 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 90.87 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 90.84 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 90.72 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 90.7 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 90.53 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 90.49 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 90.46 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 90.45 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 90.36 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 90.24 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 90.16 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 89.93 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 89.89 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 89.83 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 89.74 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 89.69 | |
| COG3684 | 306 | LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr | 89.65 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 89.61 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 89.6 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 89.42 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 89.35 | |
| PRK15452 | 443 | putative protease; Provisional | 89.29 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 89.19 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 89.17 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 89.14 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 89.08 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 88.92 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 88.9 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 88.85 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 88.81 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 88.8 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 88.72 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 88.7 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 88.7 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 88.69 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 88.65 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 88.65 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 88.58 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 88.53 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 88.5 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 88.44 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 88.22 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 87.96 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-92 Score=646.17 Aligned_cols=356 Identities=76% Similarity=1.165 Sum_probs=342.1
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.|+++||+.+|||+.|||+|+.|++.|+++|.+|.|+||+|+|++.+|+||++||+++++||+|||+++++
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+.||+||.++|++|.++|++|++|+.+++|+|||.+++| +..|||||+++|++++.++++||+++||++|++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|+.|++|+|.+|+.+..+++.+.......++..++...+++.+.|++++|++|+|+|+.+++||++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888887766555555566778889999999999999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+++|+||||||||+|..++++++|+++.+++.+++||+.|||+|+|.||+|||+|||.+|.+|||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
||.++++.|++|++.+|++.||.|++++++..+....
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~ 357 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEE 357 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeech
Confidence 9999999999999999999999999999998755443
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-84 Score=628.24 Aligned_cols=359 Identities=92% Similarity=1.358 Sum_probs=328.4
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
++.||++|+++||+|+++|++|++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|++|+||+|.+|......++..............+...++....++.++|++|+|+|+.|++||++|++.+.++|+.+
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766554432211100010112223345555678899999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|+||||||||+|+.+++++.|+++++++.+++|||+|||||+|.|++|+|++||++|++||||+|+++..|.+
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 361 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~ 361 (370)
|+.++++.+++||+.+|.++|++++.|+++..+......
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~ 360 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT 360 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhc
Confidence 999999999999999999999999999999887665433
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-81 Score=609.68 Aligned_cols=358 Identities=65% Similarity=1.018 Sum_probs=326.4
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
+++.||++|+++|++|+++|+++++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHH
Q 017492 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~ 241 (370)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|++|+|+|+.+++||++|++.++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998873 2222111000000011223344555556889999999999999999999999999999999
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~ 321 (370)
+.++|+|+|+|+||||+++++++++++.|+++.+++..++|||++|||+++.|++|+|++||++|++||+|+++++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCC
Q 017492 322 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362 (370)
Q Consensus 322 ~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~ 362 (370)
+|+.++++.+++||+.+|.++|+.+++||++..+...+++.
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~ 360 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERL 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhh
Confidence 99999999999999999999999999999998887665543
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-81 Score=609.43 Aligned_cols=353 Identities=38% Similarity=0.641 Sum_probs=320.8
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
++.||++|+++|++|+++|++|++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccc-----------------c-Ccccc----ccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------L-GKMDE----ANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~-----------------~-~~~~~----~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
|+|++|+||+|.+|.. ..+++.... . +..++ ........+.....++.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 322211100 0 00000 00111223455556889999999999
Q ss_pred HHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 221 r~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
|+.|++||++|++++.++|+.+.++|+|+|+||||||||++..+++++.|+++++.+.+++|||+||||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred hCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 301 lGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
+||++|++||+|+++++..|++||.++++.|++||+.+|.++|+++++||++..+.
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~ 376 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhc
Confidence 99999999999999999999999999999999999999999999999999988764
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=604.00 Aligned_cols=352 Identities=38% Similarity=0.583 Sum_probs=319.8
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+++.||++|+++|++|+++|++|++|+.+++++|||.+.. +++.|||||+++|++.+.++++||+++|+++|++|||+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 468999999999999999999999999999999999999
Q ss_pred CCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHH
Q 017492 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (370)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~ 240 (370)
+.|+|++|+||+|.+|......+ ..... ..... ...+....++.++|++|+|+++.+++||++|++.++++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPT-----GAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhccc-----CCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 00000 00000 0011122357789999999999999999999999999999
Q ss_pred HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 241 ~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
.+.++|+|+|+||||||||++.++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++.+|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999886689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
++||.++++.|++||+.+|.++|+++++||++..+...+.
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~ 363 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY 363 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCCC
Confidence 9999999999999999999999999999999998865543
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=602.19 Aligned_cols=342 Identities=44% Similarity=0.707 Sum_probs=313.1
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||+|||+++++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (370)
+||+++||+|+++|++|++|+++++|+|||++..+++.|||||++ +++.++++++||+++||++|++|||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987767899999996 6999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccccccccccccCc-------------c---c---cccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcE
Q 017492 168 DIKNRFTLPPFLTLKNFQGLDLGK-------------M---D---EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (370)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~-------------~---~---~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv 228 (370)
|+||+|.+|.++..+++.+....+ . . .....+...++..+.|+.++|++|+|||+.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999988766655432111000 0 0 00111233445556788999999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 229 ~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++|++.+.++|+.+.++|+|+|+||||||+|++..+++++.|+++++.+ ++|||+||||+++.||+|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 309 gr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|||++|+++..|++||+++++.|++||+.+|.++|+++++||++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-79 Score=598.16 Aligned_cols=351 Identities=41% Similarity=0.664 Sum_probs=315.4
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+.||++|+++|++|+++|++|++|+++++++|||++..+ ++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 6899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCc--ccccccc-------ccccCcccc-c----cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcE
Q 017492 163 GRREADIKNRFTLPPF--LTLKNFQ-------GLDLGKMDE-A----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~-------~~~~~~~~~-~----~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv 228 (370)
|+|++|+|++|. |.. ....++. .+....... . .......+.....++.++|+.|+||++.|++||
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 999999999983 421 1111100 000000000 0 011222233334578899999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 229 ~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++|++.+.++|+.+.++|+|+|+|||||||++|+++++++.|+++++++.+++||+++||||+|.|++|+|++|||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 309 gr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
||||+|+++..|++||+++++.+++||+.+|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=588.35 Aligned_cols=347 Identities=42% Similarity=0.702 Sum_probs=316.5
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||++++.||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
++.||++|+++|++|+++|+++++|+.+++++|||.+.. +++.|||||.++|++.+.++++||+++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHH
Q 017492 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~ 241 (370)
.|+|++|+|++|.+|.+....+...... ....+.. ......++.++|++++|+|+.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998885443322110000 0000000 111224567899999999999999999999999999999
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~ 321 (370)
+.++|+|+|+||||||+|+++++++++.|+++++++.+++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988866899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 322 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 322 ~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987654
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-77 Score=583.43 Aligned_cols=343 Identities=51% Similarity=0.780 Sum_probs=305.1
Q ss_pred HHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHH
Q 017492 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (370)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~l 93 (370)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhc
Q 017492 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (370)
Q Consensus 94 a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~ 173 (370)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++||++++||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCcc-------------ccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHH
Q 017492 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (370)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~ 240 (370)
.+|.+++.+++......+. ..........+.....+++++|+.|+|+++.|++||++|++++++||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9988876665532211111 011222344566666788999999999999999999999999999999
Q ss_pred HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 241 ~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
.+.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|+|+|||++|++||||+|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
++||.++++.|++||+.+|.++|+++++||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998764
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=565.01 Aligned_cols=339 Identities=47% Similarity=0.751 Sum_probs=309.3
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhcc-CC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~-~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (370)
++|+++|++|.++|++|++|++++.++|||.+. .| .+.|||||.++|++.+.++++||+++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc
Q 017492 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 245 (370)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a 245 (370)
++|+||+|..|..+...+.... ....+...+.....++..+|+.|+|+++.+++||++|++.++++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988765443321100 001112223333456778999999999999999999999999999999999
Q ss_pred CccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 246 G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
|+|+|+|+||||+++|..++++..|+++.+.+ .+++|||++|||+++.|++|+|++||++|++||+|++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999999999999998753 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
||.++++.+++||+.+|.++|+++++||+++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999999999753
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=525.69 Aligned_cols=320 Identities=91% Similarity=1.331 Sum_probs=288.6
Q ss_pred cceeeecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCc
Q 017492 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (370)
Q Consensus 45 ~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~ 124 (370)
-|+|+||+|+|++++||+|++||+++++||++||++++++.||++|+++||+|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.|||||+++|++.+.++++||+++||++|++|||+|+.|+|++|+||+|.+|.....+++..............+...++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887665555422110000001122334455
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
....++.++|++|+|+|+.|++||++|++.+.++|+++.++|+|+|+||||||+|+|+++++++.|+++++++.+++||+
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 55568889999999999999999999999999999999999999999999999999999999999999998886789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 364 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~~ 364 (370)
+|||||+|.|++|+|++|||+|++|||++++++..|++||.++++.+++||+.+|.++|+++++|+++..+......++|
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988766544433
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-65 Score=494.16 Aligned_cols=349 Identities=44% Similarity=0.632 Sum_probs=320.7
Q ss_pred hHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccC
Q 017492 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (370)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~ 86 (370)
+.|+++.|++++| +.|.|+.+|+++|.|+++|+++|++|.|+||+|++++++|++|+|||+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchh
Q 017492 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (370)
Q Consensus 87 ~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~ 166 (370)
+++|...+++|..+|.++++++.+++++|++.+..+ ||+|+..+++...++++++.++|++++++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999886643 8999989999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccccccccCcccc----ccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDE----ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
+|.++++..|......|+.+....+..+ .......++.....+|..+|+++.+|++.|..|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999999888766666654322211111 111124556666678899999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.+.|+|+|++|||||+|+||++++++.|+++.++++++++|++|||||+|.|++|||++||++|++||||+|++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
||.++++.+++||+.+|.++|+++++||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998887543
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=448.91 Aligned_cols=299 Identities=61% Similarity=0.938 Sum_probs=283.0
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|||++++.||+++||++.+..|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (370)
+++..++++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988999999877778999999987789999999999999999999999999863211
Q ss_pred HhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCc
Q 017492 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247 (370)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~ 247 (370)
+.|+.++++++.+++||++|++.++++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 368899999999999999999999999999999999
Q ss_pred cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHH
Q 017492 248 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 327 (370)
Q Consensus 248 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~ 327 (370)
|+|+++||||++.++++++++.+.++++.+.+++|||++|||+++.|++|+|++|||+|++||||++++...|.+++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988755799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 328 LEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 328 l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999974
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=317.72 Aligned_cols=270 Identities=27% Similarity=0.358 Sum_probs=216.4
Q ss_pred HhHhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CC
Q 017492 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS 113 (370)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~ 113 (370)
.+.+.||+|+|+|+.|+ +++++||+|+|||++++.|||++||+|+.....+.+..+|++|+++|+++++++++. ..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35678999999999998 789999999999999999999999998754444557899999999999999998843 12
Q ss_pred ------HHHHhccCC-CceEEEEeecC----ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 114 ------~eei~~~~~-~~~~~Qly~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
.+.+.+..+ .+++..+.... +.+...+ .++..+++++.++++++..
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~-------------------- 153 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE-------------------- 153 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh--------------------
Confidence 223344444 56666665433 3343333 3445688999998875421
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCc
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA 257 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg 257 (370)
..++..+.+| ..+.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||
T Consensus 154 --------------------~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 154 --------------------AVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred --------------------hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 0011123333 236799999999999999997 789999999999999999999988
Q ss_pred cC--------------------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 258 RQ--------------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 258 ~~--------------------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+. .+++.++...|.++++++. ++|||++|||+++.|++|+|++|||+|++||+||+++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 41 1346677788888887763 79999999999999999999999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 318 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
. |.+++.++++.+++||+.+|.++|++|++||+.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999973
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=319.90 Aligned_cols=279 Identities=25% Similarity=0.349 Sum_probs=225.8
Q ss_pred HhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CC--
Q 017492 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (370)
Q Consensus 40 ~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~-- 113 (370)
...||+|+|.|+.|+ +.+++||+|+|||++++.||+++||+|++....+.|..||++|+++|+++++++++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 457999999999998 788999999999999999999999998764344567899999999999999998853 11
Q ss_pred ----HHHHhccCC-CceEEEEeecCChHHH-HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 114 ----VEEVASTGP-GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 114 ----~eei~~~~~-~~~~~Qly~~~d~~~~-~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
.+.+.+..| .|++.+|+........ .+..+.++..+++++.++++++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe------------------------- 161 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE------------------------- 161 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh-------------------------
Confidence 222344444 5677777654442332 223344456789999999875431
Q ss_pred ccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCcc----
Q 017492 188 DLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---- 258 (370)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~---- 258 (370)
.+++..+.+| ..+.++++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+
T Consensus 162 ---------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 162 ---------------LVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred ---------------hcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 0111123333 246799999999999999998 7899999999999999999999883
Q ss_pred -----C---------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH
Q 017492 259 -----Q---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 324 (370)
Q Consensus 259 -----~---------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v 324 (370)
+ .+++.++...|.++++++ .++|||++|||+++.|++|+|++|||+|++||+|++++...|.+++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 2 246788889999998874 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
.++++.+.+||+.+|..+|+++++||++..+....
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999999876644
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=308.50 Aligned_cols=276 Identities=26% Similarity=0.369 Sum_probs=216.8
Q ss_pred hhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC--CH--
Q 017492 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SV-- 114 (370)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~--~~-- 114 (370)
+.||+|+|+|+.|+ +++++||||+|||++++.||+++||+|++......+..++++|+++|+++++++++.. ..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 46999999999997 5789999999999999999999999987533334577999999999999999987521 11
Q ss_pred ----HHHhccCC-CceEEEEeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccc
Q 017492 115 ----EEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (370)
Q Consensus 115 ----eei~~~~~-~~~~~Qly~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (370)
..+.+..+ .|.+.+|......+. ..+..+.++..+++++.++++++..
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~-------------------------- 154 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE-------------------------- 154 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc--------------------------
Confidence 22333333 456666543222111 2333444455688999998876431
Q ss_pred cCccccccchhhHHHhhhcCCCCc-cH-HHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccC----
Q 017492 189 LGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (370)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~---- 259 (370)
.+++.++.+| .| +.++++++.+++||++|.+ .+.++++.+.++|+|+|+|+|+||+.
T Consensus 155 --------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 155 --------------LVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred --------------ccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 0111233344 23 7899999999999999987 78999999999999999999998753
Q ss_pred --------------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHH
Q 017492 260 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 325 (370)
Q Consensus 260 --------------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~ 325 (370)
.+++.++.+.+.++++ ...++|||++|||+++.|++|+|++|||+|++||+|+..+...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346667778888776 2237999999999999999999999999999999999987767999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 326 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 326 ~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
++++.+.+||+.+|.++|+++++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887654
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=244.93 Aligned_cols=256 Identities=20% Similarity=0.236 Sum_probs=192.6
Q ss_pred hcccceeeecccCC--CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||+++|+|+.++. .+++|++|+|+|++++.||++++|.. .+|..||++|+++|...++..+ ++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 69999999999874 57999999999999999999999942 4799999999999999888653 4655332
Q ss_pred ----cCCCceEEEEeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 120 ----~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
..+......+-.+...+.. +.+....++| .+.+++ |+..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 2221123333333333332 3344445566 466655 3210
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCC--------CCcc
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVP 264 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~--------~~~~ 264 (370)
++....++.++++|+.++.|.++|+ +.+.++|+.+.++|+|+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1223467899999999988855555 9999999999999999999998877631 1223
Q ss_pred chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------
Q 017492 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------ 318 (370)
Q Consensus 265 ~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------ 318 (370)
+.+.++.+++++. ++|||+||||+++.|++|||++|||+||+||+|- ++...
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 3567899998876 7999999999999999999999999999999882 22110
Q ss_pred ----cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 319 ----EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 319 ----~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+|. ..+.+++.++..+||..|.++|+++++||+...+..
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 010 128889999999999999999999999999876554
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.44 Aligned_cols=256 Identities=19% Similarity=0.234 Sum_probs=195.0
Q ss_pred hcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-
Q 017492 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (370)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (370)
.||+++|+|..|+ +++++|++|+|+|++++.|||+++|.. ..|..||++|+++|...++.- +++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 5999999999997 457999999999999999999999942 478999999999998888854 3566543
Q ss_pred ---ccCCCceEEEEeecCChHHHHHHHHHHHHcCC--cEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 119 ---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~--~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
+..+...+..+-.....+.. +.++...++|+ ++|+|. +..
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD--~a~-------------------------------- 121 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITID--IAH-------------------------------- 121 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEE--CCC--------------------------------
Confidence 22232224444444434432 34445556654 877763 321
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC------CCccc-
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA- 265 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~------~~~~~- 265 (370)
++.....+.|++||+.++ .||++|.+.+.++++.+.++|+|+|.|++|||++. ..+.+
T Consensus 122 --------------gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 122 --------------GHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred --------------CchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 011124567999999995 88888889999999999999999999999999652 12445
Q ss_pred -hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHH---Hh---
Q 017492 266 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL---AA--- 318 (370)
Q Consensus 266 -~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~---~~--- 318 (370)
.+..+.++++.+ ++|||++|||+++.|++|+|++||++||+|++|+ ++. ..
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 445688888776 7999999999999999999999999999999987 110 01
Q ss_pred ----cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 319 ----EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 319 ----~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+|.+ .+.+++..+..+|+..|.++|++++.||++..++.
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 48889999999999999999999999999765443
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=227.57 Aligned_cols=256 Identities=21% Similarity=0.243 Sum_probs=194.3
Q ss_pred hhcccceeeecc--cCCCCCCccceeEcCe-----eecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC
Q 017492 41 NAFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (370)
Q Consensus 41 ~~~~~i~l~pr~--l~~~~~vd~s~~l~g~-----~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (370)
-.||++.|+|+. +.+-+++|++++|-.+ .+..||+-|.|-.. ++..+|.+.+++|...++. ...+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iH--k~~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIH--KHYS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEe--eCCC
Confidence 379999999974 3456899999999744 78999999999654 4789999999999999995 4456
Q ss_pred HHHHhcc----CCCc-eEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017492 114 VEEVAST----GPGI-RFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 114 ~eei~~~----~~~~-~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
+|+..+. .+.. ...-+-.+.. +...+.++...++ +.+.|+|. +..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD--~Ah------------------------- 131 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLD--VAN------------------------- 131 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEE--CCC-------------------------
Confidence 7664321 2211 1111122222 2333445555555 47877764 210
Q ss_pred cccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc-----cCCccCC
Q 017492 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQL 260 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs-----~~gg~~~ 260 (370)
++.....+.|+|||+.|+.+.++|| +.++++|+.++++|||+|.|+ +|++|+.
T Consensus 132 ---------------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 132 ---------------------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred ---------------------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCcee
Confidence 1223467899999999977777788 999999999999999999998 7888888
Q ss_pred CCcc-chHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh
Q 017492 261 DYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 318 (370)
Q Consensus 261 ~~~~-~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~ 318 (370)
++.. |++.++++++++++. ++|||+||||+++.|++|||++|||+||+|+.|. ++++.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS 270 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccch
Confidence 8755 899999999998865 7999999999999999999999999999998662 11110
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -----------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+++.++..+|+..|.++|+.+++||++.
T Consensus 271 ~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 02788999999999999999999999999754
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=224.32 Aligned_cols=274 Identities=24% Similarity=0.225 Sum_probs=188.4
Q ss_pred CCccceeEcC-----eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeec
Q 017492 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (370)
Q Consensus 58 ~vd~s~~l~g-----~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~ 132 (370)
.++.++++.+ ..+..||+++||+++.+ .++...+++.++++.|....+++. ..+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEec-C
Confidence 3344565554 34578999999998765 344567999999999999988875 46677765332 2345541 1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
.........++. ++++.|-+.--.. | .+-.+|. +++.. +. . ..+....++.+++..++
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~e-iA-~------~r~~~~g~~~isp~~~~ 193 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEE-IA-K------IRGIPPGVDLISPPPHH 193 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHH-HH-H------HhCCCCCccccCCCCCC
Confidence 112222222211 4555554431110 0 0000111 01000 00 0 00011122344554556
Q ss_pred Ccc-----HHHHHHHHHhcC-CcEEEEecC--CHHHHHHHHHcC-ccEEEEccCCccC--------CCCccchHHHHHHH
Q 017492 211 SLS-----WKDVKWLQTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEV 273 (370)
Q Consensus 211 ~~~-----~~~i~~ir~~~~-~Pv~vK~v~--~~~~a~~a~~aG-~d~I~vs~~gg~~--------~~~~~~~~~~l~~i 273 (370)
++. .+.++++|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++|.+ .+++.|+...|.++
T Consensus 194 ~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 194 DIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 653 567999999997 999999986 466766666655 9999999996543 35688999999999
Q ss_pred HHHc-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------
Q 017492 274 VKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 319 (370)
Q Consensus 274 ~~~~-----~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------- 319 (370)
.+++ +.++||+++|||+++.|++|+|++|||+|.+||++|+++.|.
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~ 353 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEG 353 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCch
Confidence 8765 347999999999999999999999999999999999987654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 320 GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 320 G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
|.++|.++++.+.+||+.+|..+|++++++|+++++.
T Consensus 354 ~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 354 KAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 7789999999999999999999999999999998764
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-26 Score=222.17 Aligned_cols=289 Identities=21% Similarity=0.275 Sum_probs=190.7
Q ss_pred hhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC-C---CCCCH
Q 017492 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W---STSSV 114 (370)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~---~~~~~ 114 (370)
..||++.|+|. ++ +.+++|+++.+.+..+..||+++||.+.+ +..++.+.+++|...+++. . ...+.
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 37999999999 54 45789999999999999999999998764 6799999999999767762 1 22345
Q ss_pred HHHhcc----CCC---ceEEEEee-cCChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCcccccccc
Q 017492 115 EEVAST----GPG---IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 115 eei~~~----~~~---~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
+++.+. .+. ...-++|. +.+++.+.++++.+++++. .+.+.. |. ...++..... ..+...-
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V---~v~vr~~~~---~~~e~a~~l~-eaGvd~I--- 158 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGV---IVAVSLSPQ---RAQELAPTVV-EAGVDLF--- 158 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeE---EEEEecCCc---CHHHHHHHHH-HCCCCEE---
Confidence 544321 110 00111221 3456666677766666542 222211 10 0001000000 0000000
Q ss_pred ccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------C
Q 017492 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------Q 259 (370)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~ 259 (370)
.++... ..+.|. .....|+.+.++++..++||+.+.+.+.++|+.+.++|||+|.++.++|+ .
T Consensus 159 ~vhgrt-------~~~~h~----~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~ 227 (368)
T PRK08649 159 VIQGTV-------VSAEHV----SKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGV 227 (368)
T ss_pred EEeccc-------hhhhcc----CCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCccc
Confidence 000000 001111 11125777777777789999998899999999999999999999754442 1
Q ss_pred CCCccchHHHHHHHHHHcc--------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc------------
Q 017492 260 LDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------ 319 (370)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~--------~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~------------ 319 (370)
...+.|.+.++.++.++.+ .++|||++|||+++.|++|||++|||+||+|++|.....+.
T Consensus 228 ~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~ 307 (368)
T PRK08649 228 LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPH 307 (368)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCC
Confidence 2236778888887765421 15999999999999999999999999999999986533221
Q ss_pred -----CH-------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 320 -----GE-------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 320 -----G~-------~~v~~~l~----------~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
|. ..+.+++. ++...||..|.++|+++|+||++..++.
T Consensus 308 ~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 308 PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 13777877 9999999999999999999999887764
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=220.58 Aligned_cols=291 Identities=21% Similarity=0.264 Sum_probs=190.9
Q ss_pred Hhhcccceeeec-ccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCC----CCCCH
Q 017492 40 RNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (370)
Q Consensus 40 ~~~~~~i~l~pr-~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~----~~~~~ 114 (370)
...||+|.|+|. .-++.+++||++.+.+.++..||+.|||++.+ +.+++.+++++|.+.++|.. .....
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~ 85 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDP 85 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCH
Confidence 358999999996 55788899999999899999999999998875 77999999999996667631 12222
Q ss_pred HHH----hccCCC-------ceEEEEee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 115 EEV----ASTGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 115 eei----~~~~~~-------~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
+++ ....+. ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++.... ...
T Consensus 86 ~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l------~eA 154 (369)
T TIGR01304 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV------VKA 154 (369)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH------HHC
Confidence 222 111000 00111221 24566666666666666522 122221 11 111110000 000
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
..+.+. .+.+ -..+++.. ..-.|..+.++++..++||+++++.+.++++.++++|||+|.++.+|+..
T Consensus 155 Gad~I~---ihgr--t~~q~~~s----g~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~ 225 (369)
T TIGR01304 155 GADLLV---IQGT--LVSAEHVS----TSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL 225 (369)
T ss_pred CCCEEE---Eecc--chhhhccC----CCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc
Confidence 000000 0000 00011111 12258889998888999999988999999999999999999865544422
Q ss_pred -CCCccchHHHHHHHHHHc-------cC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC----------
Q 017492 260 -LDYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG---------- 320 (370)
Q Consensus 260 -~~~~~~~~~~l~~i~~~~-------~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G---------- 320 (370)
+..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+||+|++|+....+.|
T Consensus 226 ~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 226 VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 223567777777776542 11 49999999999999999999999999999999986543321
Q ss_pred -------------HHH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 321 -------------EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 321 -------------~~~----v~~~l----------~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
..| +++++ .+|...|+++|..+|+++++++++..+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 306 HPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55555 4789999999999999999999998764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=212.72 Aligned_cols=258 Identities=24% Similarity=0.327 Sum_probs=193.1
Q ss_pred hcccceeeeccc-CCCCCCccceeEcC-eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~g-~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|... .+.+++|++|.|.+ ..++.||+.|||.+.+ +..++.+.+++|...++.. ..+++++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 699999999764 45788999999988 8899999999998764 6689999999998777753 244555432
Q ss_pred c---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 120 T---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 120 ~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
. ...+..+..-.+.+ ....+.++.+.++|++.++++.-.
T Consensus 75 ~i~~vk~~l~v~~~~~~~-~~~~~~~~~l~eagv~~I~vd~~~------------------------------------- 116 (325)
T cd00381 75 EVRKVKGRLLVGAAVGTR-EDDKERAEALVEAGVDVIVIDSAH------------------------------------- 116 (325)
T ss_pred HHHHhccCceEEEecCCC-hhHHHHHHHHHhcCCCEEEEECCC-------------------------------------
Confidence 2 12222222222222 334456667777899988875310
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHH
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMA 269 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~ 269 (370)
+++...++.++++++..+ +||++..+.+.++|+.+.++|+|+|+++..+|+ ...++.+.+..
T Consensus 117 -----------G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 117 -----------GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred -----------CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 011224567999999874 899988899999999999999999999543322 13457788888
Q ss_pred HHHHHHHccC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------
Q 017492 270 LEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 319 (370)
Q Consensus 270 l~~i~~~~~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------- 319 (370)
+.++.+++.. ++|||++|||+++.|++|+|++||++||+||.|+-...+.
T Consensus 186 i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~ 265 (325)
T cd00381 186 VADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGD 265 (325)
T ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccc
Confidence 8888876632 6999999999999999999999999999999986321110
Q ss_pred -------------C-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 320 -------------G-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 320 -------------G-------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
| .-.+.+.+.++...||..|.++|+++|+||++....
T Consensus 266 ~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 266 RYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred cccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 1 012888999999999999999999999999987543
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.84 Aligned_cols=256 Identities=24% Similarity=0.318 Sum_probs=180.5
Q ss_pred hcccceeeecc---cCCCCCCccceeE-cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017492 42 AFSRILFRPRI---LIDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (370)
Q Consensus 42 ~~~~i~l~pr~---l~~~~~vd~s~~l-~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei 117 (370)
.||++.|+|.. +++..++|+++.+ -+.+++.||+-|||...+ |..+|.+.++.|...++.- ++++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 69999999976 3455666776555 579999999999996553 7789999999999988854 3555532
Q ss_pred h-------ccCC-------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 118 ~-------~~~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
. +..| ....+=...+... ...+.++...++|++.|+|.. ..
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~---------------------- 130 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH---------------------- 130 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS----------------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC----------------------
Confidence 2 1111 1222222222222 123455556678999998742 11
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
++.....+.++++|+.++ +||+...+.+.+.++.++++|||+|.|.-.+|+-
T Consensus 131 ------------------------g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 131 ------------------------GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp ------------------------TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred ------------------------ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 112234667999999995 9999999999999999999999999997655541
Q ss_pred ---CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH----------------------
Q 017492 260 ---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------- 313 (370)
Q Consensus 260 ---~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------- 313 (370)
.-.|.|.+.++.++.++.. ..+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 2347788899999988764 37999999999999999999999999999999772
Q ss_pred ----HHHHh------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 314 ----YSLAA------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 314 ----~~~~~------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
.++.. +|. -.+.+++..|...||..|.++|+.+|+||+...
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 11110 111 138899999999999999999999999999874
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=197.60 Aligned_cols=256 Identities=20% Similarity=0.197 Sum_probs=188.5
Q ss_pred hhcccceeeeccc--CCCCCCccceeEc-----CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC
Q 017492 41 NAFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (370)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~s~~l~-----g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (370)
-.||++.|+|+.- .+-+++|++.+|. ...+..||+-|+|-.. ++..+|.+.+++|...++. ...+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iH--k~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVH--KHYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEe--cCCC
Confidence 3799999999743 4557899988774 3456799999999654 4789999999999999995 4456
Q ss_pred HHHHhcc----CCCc-eEEEEeecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017492 114 VEEVAST----GPGI-RFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 114 ~eei~~~----~~~~-~~~Qly~~~d~~~~~~~l~ra~~--~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
+|+..+. .+.. ...-+-.+..++. .+.++...+ +|++.|+|.+ . +
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d-~er~~~L~~~~~g~D~iviD~--A----------h--------------- 132 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDAD-FEKTKQILALSPALNFICIDV--A----------N--------------- 132 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEEC--C----------C---------------
Confidence 7764432 1111 1111222333332 344444444 5888887742 1 0
Q ss_pred cccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----C--
Q 017492 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q-- 259 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~-- 259 (370)
++.....+.|++||+.+ +++|+...+.+++.++.++++|||+|.|.-..|+ +
T Consensus 133 ---------------------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 133 ---------------------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ---------------------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 12234677899999998 6899999999999999999999999999765553 2
Q ss_pred CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh
Q 017492 260 LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 318 (370)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~ 318 (370)
...|.|.+.++.++.++.+ ..+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 2246788888888887654 37899999999999999999999999999999872 22111
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -----------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+++..+..+|+..|.++|..+|+||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 010 02888999999999999999999999999754
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=201.19 Aligned_cols=256 Identities=20% Similarity=0.263 Sum_probs=183.3
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|..- ...+++|++|.|. ...+..||+-|||.+.+ +..+|.+.+++|...+++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4799999999754 3457889998885 46678999999997654 5689999999999988873 46676643
Q ss_pred ccC------C--Cce------------------EE------------------------EEee----cCChHHHHHHHHH
Q 017492 119 STG------P--GIR------------------FF------------------------QLYV----YKDRNVVAQLVRR 144 (370)
Q Consensus 119 ~~~------~--~~~------------------~~------------------------Qly~----~~d~~~~~~~l~r 144 (370)
+.. . .+. .+ ||+. +.. ..+.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~-~~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCC-HHHHHHHHH
Confidence 211 0 000 00 0110 111 123344455
Q ss_pred HHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc
Q 017492 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (370)
Q Consensus 145 a~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~ 224 (370)
+.++|++.|+|. +. .+++...++.++++++.+
T Consensus 161 lv~aGvDvI~iD--~a----------------------------------------------~g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVID--SA----------------------------------------------HGHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEEE--CC----------------------------------------------CCCChhHHHHHHHHHhhC
Confidence 555666655542 11 012233567899999998
Q ss_pred -CCcEEEEecCCHHHHHHHHHcCccEEEEccCCc-----cCCC-CccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHH
Q 017492 225 -KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 225 -~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~ 296 (370)
+++|+++.+.+.++++.+.++|+|+|.++...| +..+ .+.|.+..+.++.+.+. .++|||++|||+++.|++
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 689999999999999999999999999864333 3333 46677887777766542 379999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHH--------------------HHHh-------------------------cCHH-------HH
Q 017492 297 KALALGASGIFIGRPVVY--------------------SLAA-------------------------EGEK-------GV 324 (370)
Q Consensus 297 kalalGAd~V~igr~~l~--------------------~~~~-------------------------~G~~-------~v 324 (370)
|||++||++||+|++|.- +++. .|.+ .+
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999998832 1110 0100 18
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.+++.+|..+||..|.++|+.+|.||+..
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 88999999999999999999999999854
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=194.96 Aligned_cols=238 Identities=22% Similarity=0.306 Sum_probs=172.3
Q ss_pred cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC---------------------C------CCCC
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS---------------------W------STSS 113 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~---------------------~------~~~~ 113 (370)
++|+|+|.+++.||++||...+. +....+.+.+.|..+++.. + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999953221 2233444555588777751 1 1112
Q ss_pred HHH----Hhcc---CCCceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017492 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 114 ~ee----i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
.+. +.+. .+.|.++||+ ..+.+...+.++.++++ +++++.+|+.||.... . +
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~------g---- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G------G---- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C------c----
Confidence 222 2211 1247899997 46777778888888876 3999999999997410 0 0
Q ss_pred cccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEccC-CccC
Q 017492 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ 259 (370)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs~~-gg~~ 259 (370)
..+. .++++..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0001 24556788999999999999999987554 3477889999999999874 2211
Q ss_pred C------------C---Cccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 260 L------------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 260 ~------------~---~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
. . .+++ .++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 1 0 1222 235677777766 799999999999999999999999999999999862 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.+++.++++|..+|...|+++++|+.+.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4788999999999999999999999764
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=187.32 Aligned_cols=239 Identities=20% Similarity=0.231 Sum_probs=168.9
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~---------------------------- 110 (370)
|++|+++|.+++.||++|.-+.+. +....+.+...|..+++. |..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 679999999999999997543322 333444466777665552 210
Q ss_pred ------CCCHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017492 111 ------TSSVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (370)
Q Consensus 111 ------~~~~e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~ 177 (370)
+..++ ++.+. ...+.+.|+. ..+.+...+.++.++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 01111 22221 1246788885 45667777888888889999999999875210 0
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~vs 253 (370)
.. . +. ..+....+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++
T Consensus 141 ~~--~----------------g~-------~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI--S----------------GA-------EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc--c----------------cc-------hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 0012356789999999999999998744 356788999999999999
Q ss_pred cCCc-cCCC---------C---ccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 254 NHGA-RQLD---------Y---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 254 ~~gg-~~~~---------~---~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
|+.. ...| + |++ .+..+.++++.+ ++||+++|||++++|+.++|.+||++|++||++++
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~-- 271 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR-- 271 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh--
Confidence 8742 1111 1 111 334556666554 79999999999999999999999999999999986
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 317 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|+. ++..+.+||..+|...|+++++|+++.
T Consensus 272 --~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 --HGPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred --cCch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 2553 778899999999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=185.86 Aligned_cols=239 Identities=21% Similarity=0.259 Sum_probs=177.2
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------~ 112 (370)
|++|+++|.+++.||++|+-... .+..+++.+.+.|..+++. |... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999873222 1336777777888776662 3211 1
Q ss_pred CHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017492 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 113 ~~e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
.++ ++.+. ...+.+.||. ..+.+...+.+++++++| ++++.||+.||....- +.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~----------- 136 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GM----------- 136 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------cc-----------
Confidence 122 22221 1246889986 457788888999999998 9999999999863100 00
Q ss_pred cccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHcCccEEEEccCC-ccC
Q 017492 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE----DARIAVQAGAAGIIVSNHG-ARQ 259 (370)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~----~a~~a~~aG~d~I~vs~~g-g~~ 259 (370)
.+. .++.+.++.++++|+.+++||++|+..+.+ .++.+.++|+|+|+++|.. |..
T Consensus 137 ------------------~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 137 ------------------AFG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------ccc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 000 244567889999999999999999985543 3788899999999997731 110
Q ss_pred --C-------------CCc----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 260 --L-------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 260 --~-------------~~~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
. ..+ +..++.+.++++.+ ++||+++|||++++|+.+++++|||+|++||++++ +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~ 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----D 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----C
Confidence 0 011 22467788888876 79999999999999999999999999999999986 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3 4778999999999999999999999764
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=185.65 Aligned_cols=240 Identities=19% Similarity=0.210 Sum_probs=167.9
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~---------------------------- 110 (370)
|++|+++|.+|+.||++|.-+.+. .....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988754432 222333366666665542 110
Q ss_pred -------CCCHHH----Hh---ccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCC
Q 017492 111 -------TSSVEE----VA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (370)
Q Consensus 111 -------~~~~ee----i~---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p 176 (370)
+..+++ +. +....+.+.|+.. .+.+...+.+++++++|++++.+|+.||... +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~------------~ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD------------P 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------C
Confidence 111222 11 1112467888864 4556667788888889999999999886320 0
Q ss_pred CccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEE
Q 017492 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 252 (370)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~v 252 (370)
... +. ......++.++++++.+++||++|+... .+.++.+.++|+|+|++
T Consensus 143 ---~~~----------------g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 143 ---DIS----------------GA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred ---CCc----------------cc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 000 00 0012257889999999999999997643 24578889999999999
Q ss_pred ccCCc-cCC---------CCccc-------hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 253 SNHGA-RQL---------DYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 253 s~~gg-~~~---------~~~~~-------~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+|+.. ... .++.+ .+..+.++++.+ ++|||++|||++++|+.++|.+||++|++||++++
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~- 273 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR- 273 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh-
Confidence 88642 111 12211 234455555555 79999999999999999999999999999999987
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 316 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
.|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 274 ---~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 274 ---HGP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ---hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 244 47889999999999999999999998854
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=181.51 Aligned_cols=236 Identities=22% Similarity=0.277 Sum_probs=170.1
Q ss_pred ceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC-CCCC--------------------------CH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTS--------------------------SV 114 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~~~~--------------------------~~ 114 (370)
+|+++|.+++.||++|+-.. + ....+.+.+...|..+++.. .... .+
T Consensus 1 ~~~~~G~~~~nP~~~aag~~-~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASGTF-G-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCCCC-C-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 58899999999999985211 1 12345555544446666532 2110 11
Q ss_pred H----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 115 E----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 115 e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
+ ++.+. ...+..+||. ..+.+...+.+++++++|++++.+|+.||....| .
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------g------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------G------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------c-------
Confidence 2 22221 1257889997 4567788889999999999999999999963111 0
Q ss_pred ccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEccC-CccCC--
Q 017492 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL-- 260 (370)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs~~-gg~~~-- 260 (370)
..+ . .++.+..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+..
T Consensus 133 -------------~~~-~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAF-G--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------ccc-c--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 0 24456778899999999999999986443 4477899999999999874 12111
Q ss_pred -------------CCcc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH
Q 017492 261 -------------DYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 323 (370)
Q Consensus 261 -------------~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~ 323 (370)
..++ ..+..+.++++.+ ++|||++|||.+++|+.++|.+|||+|++||++++ ++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch--
Confidence 0111 1356777887776 79999999999999999999999999999999986 33
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 324 VRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 324 v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
.+++.+.++|..+|...|+++++|+++
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVG 294 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 367899999999999999999999976
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=185.02 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=182.0
Q ss_pred EcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHH----H----Hhcc--CCCceEEEEeecCC
Q 017492 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE----E----VAST--GPGIRFFQLYVYKD 134 (370)
Q Consensus 65 l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e----e----i~~~--~~~~~~~Qly~~~d 134 (370)
+.+..++.|+++|||++.+ |.++++.|.++|..++++++.+.... + .... .+.+..+||+ +.+
T Consensus 3 i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~~ 75 (321)
T PRK10415 3 IGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GSD 75 (321)
T ss_pred cCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CCC
Confidence 4556788899999998875 88999999999999988887443211 0 1111 1246679997 678
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccH
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (370)
++.+.+.++++++.|++.|.+|++||+. ++... +.+..+. .++++..
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~----------------g~Gs~ll--~~p~~~~ 122 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAK---------------KVNRK----------------LAGSALL--QYPDLVK 122 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCC----------------CcccHHh--cCHHHHH
Confidence 8888888888888999999999999973 00100 1112222 3677788
Q ss_pred HHHHHHHHhcCCcEEEEecC----C----HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 215 KDVKWLQTITKLPILVKGVL----T----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~----~----~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.++.+++.+++||.+|... + .+.++.+.++|+|.|.+++....+...+.+.++.+.++++.+ ++|||++
T Consensus 123 eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~n 200 (321)
T PRK10415 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIAN 200 (321)
T ss_pred HHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEe
Confidence 89999999999999999852 1 244678899999999994322224556777899999999887 8999999
Q ss_pred cCCCCHHHHHHHHH-hCCCEEEEcHHHH-----HHHH----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhhc
Q 017492 287 GGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA----AEG----EKGVRRVLEMLREEFELAMALSGCR-SLKEIT 351 (370)
Q Consensus 287 GGI~~~~dv~kala-lGAd~V~igr~~l-----~~~~----~~G----~~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~ 351 (370)
|||++++|+.+++. .|||+||+||+++ +.-. ..| ....++.++.+.++++......|.. .+.++|
T Consensus 201 GgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 280 (321)
T PRK10415 201 GDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 (321)
T ss_pred CCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 99999999999997 6999999999654 3211 112 1234566778888888888777753 466777
Q ss_pred cccee
Q 017492 352 RDHIV 356 (370)
Q Consensus 352 ~~~l~ 356 (370)
++.-+
T Consensus 281 k~~~~ 285 (321)
T PRK10415 281 KHVSW 285 (321)
T ss_pred HHHHH
Confidence 66433
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=184.56 Aligned_cols=251 Identities=20% Similarity=0.278 Sum_probs=175.9
Q ss_pred CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CC---C----------------------
Q 017492 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW---S---------------------- 110 (370)
Q Consensus 57 ~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~---~---------------------- 110 (370)
+..|++|+|+|.+++.||++|.-..+ ......+.+.++|...++. |. .
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 56789999999999999999884432 2334555555567766662 11 0
Q ss_pred -C------C------CHH----HHh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHh
Q 017492 111 -T------S------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (370)
Q Consensus 111 -~------~------~~e----ei~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~ 169 (370)
. . .++ ++. +..+ .+.+..|....+.+...++++++++.|++++.+|+.||...
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~------ 154 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM------ 154 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC------
Confidence 0 0 122 222 1223 36677775446788888999999999999999999998631
Q ss_pred hhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHc
Q 017492 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQA 245 (370)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~a 245 (370)
+ .+. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++
T Consensus 155 ------~----~r~----------------~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~ 206 (385)
T PLN02495 155 ------P----ERK----------------MGAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKS 206 (385)
T ss_pred ------C----cCc----------------cchhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHh
Confidence 0 000 000011 24455667789999988999999998654 347789999
Q ss_pred CccEEEEccCCc--cCC----------------CCc---cc----hHHHHHHHHHHcc----CCCcEEEecCCCCHHHHH
Q 017492 246 GAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 246 G~d~I~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~ipvi~~GGI~~~~dv~ 296 (370)
|+|+|++.|+-. ... .+| ++ .+..+.++++.+. .++||++.|||.+++|++
T Consensus 207 Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~ 286 (385)
T PLN02495 207 GCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAA 286 (385)
T ss_pred CCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHH
Confidence 999999998522 111 011 11 2233445555542 259999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 297 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 297 kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
++|.+||++|++|+++++ +|.. +++.+.+||+.+|...|+++++|+++..+
T Consensus 287 e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 287 EFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 999999999999999886 3664 77889999999999999999999997653
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-21 Score=183.54 Aligned_cols=250 Identities=25% Similarity=0.294 Sum_probs=193.4
Q ss_pred EcCeeecCceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCCC------HHHHh--ccC--CCceEEEEeecC
Q 017492 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTSS------VEEVA--STG--PGIRFFQLYVYK 133 (370)
Q Consensus 65 l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~~------~eei~--~~~--~~~~~~Qly~~~ 133 (370)
+....+..++++|||.+.+ |..+++.+.++|. ..++|+|.+.. -+... ... ..|..+||+ +.
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 4456678899999999875 8899999999999 88889884321 11111 111 267899998 67
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
|++.+.+..+.+++.|++.|.||++||+. ++.-. +.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------Ccchhhc--CCHHHH
Confidence 88999999999999999999999999973 11111 1233343 477888
Q ss_pred HHHHHHHHHhcC-CcEEEEecC--------CHHHHHHHHHcCccEEEEccCCcc--CCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITK-LPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~-~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++.+++.++ +||.||... ..+.++.+.++|++.++| ||.+ |...++..|+.+.++++.++. +|
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ip 200 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IP 200 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-Ce
Confidence 899999999994 999999862 134588899999999999 7665 456678899999999999843 99
Q ss_pred EEEecCCCCHHHHHHHHH-hCCCEEEEcHH-----HHHHH---HhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 017492 283 VFLDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEI 350 (370)
Q Consensus 283 vi~~GGI~~~~dv~kala-lGAd~V~igr~-----~l~~~---~~~G~---~~v~~~l~~l~~el~~~m~~~G~~~l~~l 350 (370)
||+.|+|.+.+|+.+.|. .|+|+||+||. +++.. ...|. ....+.++.+..+++......|...+..+
T Consensus 201 vi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
T COG0042 201 VIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRL 280 (323)
T ss_pred EEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999 67999999994 45432 12233 45677889999999999999986778888
Q ss_pred cccceee
Q 017492 351 TRDHIVT 357 (370)
Q Consensus 351 ~~~~l~~ 357 (370)
+++..+.
T Consensus 281 r~h~~~~ 287 (323)
T COG0042 281 RKHLGYY 287 (323)
T ss_pred HHHHHHH
Confidence 8775443
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=186.97 Aligned_cols=145 Identities=23% Similarity=0.355 Sum_probs=120.3
Q ss_pred CCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHHHHHHHHHcc-C
Q 017492 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 279 (370)
Q Consensus 208 ~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~ 279 (370)
++..+.|+.|++|++.+ ++||+++.+.+.++++.+.++|+|+|.++.+.|. ..+.|.|.+..+.++.+.+. .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34556788999999997 7999999999999999999999999999755442 24567888888888877653 3
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh------c--------------
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E-------------- 319 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~------~-------------- 319 (370)
++|||++|||+++.|++||+++||++||+|+.|.- +++. .
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~ 423 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIK 423 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccc
Confidence 69999999999999999999999999999998742 1110 0
Q ss_pred ---CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 320 ---GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 320 ---G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|. ..+.+++.++..+|+..|.++|+.+|.||+.
T Consensus 424 ~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 424 VAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred cCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1288999999999999999999999999987
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=189.99 Aligned_cols=142 Identities=25% Similarity=0.317 Sum_probs=118.9
Q ss_pred ccHHHHHHHHHhcCC--cEEEEecCCHHHHHHHHHcCccEEEEccCCc-----c-CCCCccchHHHHHHHHHHc------
Q 017492 212 LSWKDVKWLQTITKL--PILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------ 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~--Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~------ 277 (370)
...+.|+++|+.++. +|+...+.+.++++.++++|||+|.|++|+| | +.+.++|++.++.++.+++
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 346789999999864 4555558999999999999999999999999 4 5778899999999998865
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------------------
Q 017492 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------ 318 (370)
Q Consensus 278 -~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------ 318 (370)
+.++|||+||||+++.|++|||++|||+||+||+|- ++++.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~ 428 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLS 428 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccc
Confidence 224999999999999999999999999999999883 11111
Q ss_pred --cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|.+ .+.+++.++..+||..|.++|+.++.||+..
T Consensus 429 ~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 429 FEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred cCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 0111 2888999999999999999999999999865
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=179.98 Aligned_cols=246 Identities=22% Similarity=0.256 Sum_probs=175.8
Q ss_pred cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC-C-------HHHHhccCC--CceEEEEeecCCh
Q 017492 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (370)
Q Consensus 66 ~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~-~-------~eei~~~~~--~~~~~Qly~~~d~ 135 (370)
.|..+..|+++|||.+.+ +.++++.|+++|..++.+++.+. + ..++....+ .|..+||. ..+.
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 466788999999998875 88999999999998888877321 1 112222222 57889997 6788
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...+.+++++++|+++|.||+.||.. +|.+ . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~--------------~----------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK--------------K----------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC--------------C----------------CccchHh--CCHHHHHH
Confidence 888899999999999999999999952 1110 0 0011111 35667788
Q ss_pred HHHHHHHhcCCcEEEEecC--------CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 216 DVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
+++++++.+++||.+|... ..+.++.+.++|+|+|++++.-..+...+++.++.+.++++.+ ++||+++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 9999999999999999742 1355788899999999995321112234566788899998877 79999999
Q ss_pred CCCCHHHHHHHHH-hCCCEEEEcHHHHHH-----HH----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcc
Q 017492 288 GVRRGTDVFKALA-LGASGIFIGRPVVYS-----LA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 352 (370)
Q Consensus 288 GI~~~~dv~kala-lGAd~V~igr~~l~~-----~~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~~ 352 (370)
||++++|+.+++. .|||+||+||+++.. -. ..|. ....+.++.+.+.++......|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 789999999987632 11 0121 123455666777777766766632 3555554
Q ss_pred c
Q 017492 353 D 353 (370)
Q Consensus 353 ~ 353 (370)
+
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=176.93 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=151.2
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~-------------------------- 112 (370)
|++|+++|.+|+.||++|+-... .+....+.+...|..+++. |....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 67999999999999999983222 1333444444546654442 11100
Q ss_pred -------CHHH----Hh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017492 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (370)
Q Consensus 113 -------~~ee----i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~ 177 (370)
.++. +. ...+ .+.+.|++...+.+...+.++++++.|++++.+|+.||..-.
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~------------- 141 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMP------------- 141 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-------------
Confidence 0221 21 1122 467899875437888888999998899999999999997310
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs 253 (370)
.+. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 142 ---~~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 142 ---ERG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ---CCC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 000 001111 24555677899999999999999987543 56788999999999988
Q ss_pred cCCcc---------------------CCCCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 254 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 254 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
|+... +..+|++ +++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1112332 4788889988875579999999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
||++++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999886
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=175.82 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=151.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcC-CceeecCCCCC--------CHHHHhc------cC--CCceEEEEeecCC
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G-~~~~~s~~~~~--------~~eei~~------~~--~~~~~~Qly~~~d 134 (370)
+|+++|||+|.+ |.++++.|.+.| ...++++|.+. ....+.+ .. +.|..+||+ ..+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999999886 889999999999 78888888432 1111111 11 257899998 678
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccH
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (370)
++.+.+.++++++.|++.|.||++||+. ++... +.++.+. .++++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~----------------g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS----------------GGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC----------------CCchHhh--cCHHHHH
Confidence 8888889999999999999999999973 01100 1122222 3667788
Q ss_pred HHHHHHHHhc--CCcEEEEecCC-------HHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEE
Q 017492 215 KDVKWLQTIT--KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 215 ~~i~~ir~~~--~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 284 (370)
++++.+++.+ ++||.+|.... .+.++.+.++|+|.|.|++.-..+...+++ .++.+.++++.+ ++||+
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 8999999988 49999997531 244688889999999994322224445554 788999999887 89999
Q ss_pred EecCCCCHHHHHHHHH-hCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALA-LGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kala-lGAd~V~igr~~l 313 (370)
++|||.+++|+.+++. .|||+||+||+++
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 9999999999999997 6899999999554
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=171.52 Aligned_cols=176 Identities=26% Similarity=0.396 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
..+...+.+...++.+ ++++.+|+.||.. |. ...++ .+++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g-----------------------~~~l~--~~~e~ 148 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG-----------------------GRALG--QDPEL 148 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC-----------------------hhhhc--cCHHH
Confidence 3555666777777777 7888888888752 10 00011 24455
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHcCccEEEEccCCc--c-----C-------CCC---cc----chH
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAED----ARIAVQAGAAGIIVSNHGA--R-----Q-------LDY---VP----ATI 267 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~----a~~a~~aG~d~I~vs~~gg--~-----~-------~~~---~~----~~~ 267 (370)
..+.++++++.+++||++|+..+.++ |+.+.++|+|+|++.|+-. . + ..+ |+ -++
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 56678899999999999999876544 7889999999999998522 1 0 012 22 255
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 017492 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 347 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l 347 (370)
..+.++.+.++.++|||+.|||.|++|+++.+.+||++|++|+++++ +|+. +++.+.++|.++|...|++|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~----i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPG----IVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCch----HHHHHHHHHHHHHHHcCCCCH
Confidence 67888888886789999999999999999999999999999999987 3663 788999999999999999999
Q ss_pred hhhcccce
Q 017492 348 KEITRDHI 355 (370)
Q Consensus 348 ~~l~~~~l 355 (370)
+|+++..+
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987643
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=175.82 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=166.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (370)
|+++|||.+.+ |.++++.|.++|. .++.++|.+. ...+.....+ .|..+||+ ..+.+...+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999999886 8899999999998 7888888432 1222332222 67899998 678888889999
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+++.|++.|.||++||+.- +... +.+..+. .++++..++++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~~~----------------g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQNG----------------NFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hCCC----------------CeehHhh--cCHHHHHHHHHHHHHH
Confidence 99999999999999999730 0000 1112222 3667788899999999
Q ss_pred cCCcEEEEecCC------H----HHHHHHHHcCccEEEEccCCccC---CC-------CccchHHHHHHHHHHccCCCcE
Q 017492 224 TKLPILVKGVLT------A----EDARIAVQAGAAGIIVSNHGARQ---LD-------YVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 224 ~~~Pv~vK~v~~------~----~~a~~a~~aG~d~I~vs~~gg~~---~~-------~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+++||.+|.... . +.++.+.++|+|.|.| ||++. .. ..+..++.+.++++.+ .++||
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipV 198 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTI 198 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcE
Confidence 999999998531 1 2367888999999999 66542 11 1233567787887765 26999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH-----HHHHh----cC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV-----YSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l-----~~~~~----~G---~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
|++|||++.+|+.+.+. |||+||+||+++ +.-.. +| .....+.++.+.+.++..... ...+.+++
T Consensus 199 i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~r 275 (318)
T TIGR00742 199 EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHIT 275 (318)
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 99999999999999986 999999999554 43211 11 112334555565666554332 23566666
Q ss_pred cccee
Q 017492 352 RDHIV 356 (370)
Q Consensus 352 ~~~l~ 356 (370)
++..+
T Consensus 276 k~~~~ 280 (318)
T TIGR00742 276 RHLLG 280 (318)
T ss_pred HHHHH
Confidence 65433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=183.57 Aligned_cols=143 Identities=29% Similarity=0.404 Sum_probs=118.5
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----C-CCCccchHHHHHHHHHHcc-CC
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GR 280 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~ 280 (370)
+....++.|+++++.+ ++||+++.+.+.++++.+.++|+|+|.|+.+.|+ . ..++.|++.++.++.+.+. .+
T Consensus 248 ~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~ 327 (450)
T TIGR01302 248 HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSG 327 (450)
T ss_pred cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcC
Confidence 3445678899999996 8999999999999999999999999999866552 1 2467888889888877653 37
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh----------------------
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---------------------- 318 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~---------------------- 318 (370)
+|||++|||+++.|++|||++||++||+|+.|. ++++.
T Consensus 328 vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~ 407 (450)
T TIGR01302 328 IPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKF 407 (450)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence 999999999999999999999999999999883 11110
Q ss_pred --cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 319 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 319 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
.|. ..|.+++.++..+|+..|.++|+.++.||+
T Consensus 408 ~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 408 VPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred cCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 111 138889999999999999999999999986
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=179.80 Aligned_cols=248 Identities=21% Similarity=0.266 Sum_probs=173.8
Q ss_pred CccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----C----------------------
Q 017492 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T---------------------- 111 (370)
Q Consensus 59 vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~----~---------------------- 111 (370)
.|++|+|+|.+|+.||++|+-... .. ...+.+.. +.|..+++. |.. +
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~~---~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPPT---NK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCCC---CC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 478999999999999999973221 11 22333333 345543331 110 0
Q ss_pred -----CCHH----HH---hccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC
Q 017492 112 -----SSVE----EV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (370)
Q Consensus 112 -----~~~e----ei---~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~d~~~~~~~p~ 177 (370)
..++ .+ ....+ .+.++||+...+.+...+.++.+++.|+++|.+|+.||.. +.|
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------ 143 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------ 143 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------------
Confidence 0112 11 11222 4568998754367888889999999999999999999962 100
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs 253 (370)
. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+|++.
T Consensus 144 -----~----------------~g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 144 -----G----------------MGSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----C----------------Cccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 0 000011 24555677899999989999999997542 55788999999999976
Q ss_pred cCC-c-----------------c---CCCCccc----hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 254 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 254 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|+.++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 641 1 1 1112333 4677888877653 27999999999999999999999999999
Q ss_pred EcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 308 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 308 igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
+||++++ .|+. ++..+.++|+.+|...|+.++.++....+
T Consensus 281 i~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 9999886 3553 67889999999999999999999986543
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=172.12 Aligned_cols=123 Identities=30% Similarity=0.476 Sum_probs=100.1
Q ss_pred cCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCC-cc----------CCCC---ccc----hHHHHHHHHHHccC
Q 017492 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VPA----TIMALEEVVKATQG 279 (370)
Q Consensus 224 ~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~g-g~----------~~~~---~~~----~~~~l~~i~~~~~~ 279 (370)
.++||++|+. .+.++ ++.+.++|+|+|+++|+- ++ +..+ |++ +++.+.++++.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995 44444 788999999999999841 11 1112 222 56778888888767
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
++|||++|||.+++|++++|.+||++|+++|++++ +|+. ++..+.+||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 3553 7788999999999999999999998743
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=177.64 Aligned_cols=255 Identities=24% Similarity=0.271 Sum_probs=150.4
Q ss_pred eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017492 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (370)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (370)
.+++.||+++.|+++.+. ++.-.++|++++..|+.+..++.. .+.++..... ...++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~~-~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAAK-DLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB-T-TSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhcccC-CceEEEcC-CCCCCCCHHHhc----
Confidence 457899999999999654 557789999999999998887763 4455544332 22378953 444555555553
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCc-cH----HHHHHHH
Q 017492 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQ 221 (370)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~ir 221 (370)
.++.|.|-+.--.. .. .+-.+|. +++. .+..+ .........+++..++++ +. +.|+++|
T Consensus 134 -~a~~iEIKigQGAK---pG---~GG~Lp~~KV~~-~ia~~-------R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr 198 (368)
T PF01645_consen 134 -QADMIEIKIGQGAK---PG---EGGHLPGEKVTE-EIARI-------RGVPPGVDLISPPPHHDIYSIEDLAQLIEELR 198 (368)
T ss_dssp -C-SEEEEE---TTS---TT---T--EE-GGG--H-HHHHH-------HTS-TT--EE--SS-TT-SSHHHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcc---cc---CcceechhhchH-HHHHH-------hCCCCCCccccCCCCCCcCCHHHHHHHHHHHH
Confidence 45667766542210 00 0001111 0100 00000 000000112222233333 33 3588999
Q ss_pred Hhc-CCcEEEEecC--CHHHH-HHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEE
Q 017492 222 TIT-KLPILVKGVL--TAEDA-RIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVF 284 (370)
Q Consensus 222 ~~~-~~Pv~vK~v~--~~~~a-~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi 284 (370)
+.. +.||.+|.+. ..++. ..+.++|+|.|+|++++ |+. .+.|.|....|.++.+.+ ++++.++
T Consensus 199 ~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li 278 (368)
T PF01645_consen 199 ELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLI 278 (368)
T ss_dssp HH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEE
T ss_pred hhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEE
Confidence 988 8999999974 33443 34889999999999874 442 247888888898888775 4689999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEF 335 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el 335 (370)
++||++++.|++|+++||||+|.+||++|+++.|. +.+.|.+++..+.+||
T Consensus 279 ~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el 358 (368)
T PF01645_consen 279 ASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEEL 358 (368)
T ss_dssp EESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHH
T ss_pred EeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988762 3567999999999999
Q ss_pred HHHHHHcCCC
Q 017492 336 ELAMALSGCR 345 (370)
Q Consensus 336 ~~~m~~~G~~ 345 (370)
+..|+.+|.+
T Consensus 359 ~~~~~a~G~~ 368 (368)
T PF01645_consen 359 REILAALGKR 368 (368)
T ss_dssp HHHHHHHT-S
T ss_pred HHHHHHhCCC
Confidence 9999999964
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=184.62 Aligned_cols=141 Identities=27% Similarity=0.412 Sum_probs=117.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccC-----CccCC-CCccchHHHHHHHHHHcc-CCCcEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-----GARQL-DYVPATIMALEEVVKATQ-GRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-----gg~~~-~~~~~~~~~l~~i~~~~~-~~ipvi 284 (370)
.++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++.. ++++. .++.|+++++.++.+.+. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 566799999998 8999999999999999999999999999543 33433 467899999999988653 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------------------------cC
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EG 320 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------------~G 320 (370)
++|||+++.|++|||++|||+||+|++|- ++++. .|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999872 11111 01
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
. ..+.+++.++..+|+..|.++|+++++||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 12889999999999999999999999999844
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=182.56 Aligned_cols=143 Identities=21% Similarity=0.324 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCC--c---cchHHHHHHHHHHcc
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--V---PATIMALEEVVKATQ 278 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~--~---~~~~~~l~~i~~~~~ 278 (370)
+....|+.+++||+.+ +.+|+++.+.+.++|+.+.++|+|+|.|++|.|+ +... + .+++..++++++..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 3445789999999998 5899999999999999999999999999988763 2221 2 23555677776654
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh--------------------
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------- 318 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~-------------------- 318 (370)
++|||++|||+++.|++|||++||++||+|+.|.- +++.
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~ 429 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLK 429 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccc
Confidence 79999999999999999999999999999998842 1110
Q ss_pred --cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|.+ .+.+++.+|..+||..|.++|+.++.||+..
T Consensus 430 v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 430 IAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 0111 2888999999999999999999999999876
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=179.94 Aligned_cols=146 Identities=25% Similarity=0.317 Sum_probs=120.0
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHcc-CC
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GR 280 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ 280 (370)
++....+.+++|++.+ ++||++..+.+.+.++.+.++|+|+|.|+..+|+. ..+|.++...+.++.+... ..
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444567899999987 79999988999999999999999999998887752 2457888888887765542 27
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH---------------------HHHHh---------------------
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA--------------------- 318 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------~~~~~--------------------- 318 (370)
+|||++|||+++.|++|||++||++||+|+.|- ++++.
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999872 11110
Q ss_pred --cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 319 --EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 319 --~G~~~-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+|.+| +.+++.++..+|+..|.++|+++++||+..-
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 23222 7789999999999999999999999999763
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=167.97 Aligned_cols=241 Identities=18% Similarity=0.181 Sum_probs=165.6
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC--------------------------CC
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TS 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~--------------------------~~ 112 (370)
|++|+++|.+|+.||++|.-... .+....+.+.+.|..+++. |.. +.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67999999999999999984332 1334445577788776662 221 01
Q ss_pred CHH----HHhc---cCC-CceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 113 ~~e----ei~~---~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
.++ ++.+ ..+ .+.+.++. ..+.+...+.+++++++| ++++.+|+.||.... . ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-~---------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-K---------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-c---------------cc
Confidence 122 2221 111 45666765 445666678888888888 899999999985210 0 00
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH---HHHHHH---HHcCccEEEEccCC-
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIA---VQAGAAGIIVSNHG- 256 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~---~~a~~a---~~aG~d~I~vs~~g- 256 (370)
+ ..|++...+.++++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 138 --------------------~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 --------------------I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred --------------------c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 013334567899999999999999997432 223333 35677877776631
Q ss_pred -cc--------C-C-----CC---cc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 257 -AR--------Q-L-----DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 257 -g~--------~-~-----~~---~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+. . . .+ |+ -.+..+.++++.+..++|||++|||.+++|+++++.+||++||+|+++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 0 0 11 12 13456667777665579999999999999999999999999999999987
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 276 ----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ----EGPA----VFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----hChH----HHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 2453 778899999999999999999999873
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=167.92 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=157.2
Q ss_pred CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCC----------------------
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS---------------------- 112 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~---------------------- 112 (370)
..+++++|+++|.+++.||++|. +.. .+....+.+.+.|..+++. |....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45778999999999999998876 221 2345566688888877662 22110
Q ss_pred ------CHH----HHhcc-CCCceEEEEeecC------ChHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhhcC
Q 017492 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT 174 (370)
Q Consensus 113 ------~~e----ei~~~-~~~~~~~Qly~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~g-~r~~d~~~~~~ 174 (370)
.++ ++.+. ..-|.++++.... ..+...+.++++.+ +++++.+|+.||... .|.
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~-------- 187 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD-------- 187 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc--------
Confidence 011 22221 1134667764321 23444445555443 488888888888631 000
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC-----CcEEEEecCC------HHHHHHHH
Q 017492 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVLT------AEDARIAV 243 (370)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-----~Pv~vK~v~~------~~~a~~a~ 243 (370)
..++....+.++++|+.++ +||++|+..+ .+.++.+.
T Consensus 188 --------------------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 188 --------------------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred --------------------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 0122334578899999886 9999999743 23468888
Q ss_pred HcCccEEEEccCCc-------------cCCCCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 244 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 244 ~aG~d~I~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
++|+|+|+++|.-. ++.-+|++ .++.+.++++.+++++||+++|||++++|+.+++.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 99999999988420 01112222 45677788777766799999999999999999999999999
Q ss_pred EEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017492 307 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 307 ~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 343 (370)
++||++++. |+. +++.++++|+.+|...|
T Consensus 316 ~v~~~~~~~----gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIYE----GPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHh----Cch----HHHHHHHHHHHHHHhcC
Confidence 999999862 443 67889999999998765
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-19 Score=169.17 Aligned_cols=241 Identities=25% Similarity=0.316 Sum_probs=155.5
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCc-eeecCCCCC-----C---HHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017492 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----S---VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 75 ~iapm~~~~~~~~~~e~~la~aa~~~G~~-~~~s~~~~~-----~---~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (370)
++|||.+.+ |.++++.+.++|.. .+++++.+. . ..+.....+ .|..+||. .+|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998875 88999999999999 888887431 1 111111222 57999998 678898888888
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+.+.|++.|+||++||.. ++..+ +.+..+. .+++...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhh--cChHHhhHHHHhhhcc
Confidence 8888999999999999973 01100 1223333 3666777889999999
Q ss_pred cCCcEEEEecC--------CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 224 TKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 224 ~~~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
+++||.+|... +.+.++.+.++|++.|+|.+.-..|...+++.|+.+.++++.+ ++|||+.|||.+.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999852 1345788999999999994433346667799999999999988 6999999999999999
Q ss_pred HHHHH-hCCCEEEEcHH-----HHHHH---HhcCH----HHHHHHHHHHHHHHHHHHHHcC-CCChhhhcccceee
Q 017492 296 FKALA-LGASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEITRDHIVT 357 (370)
Q Consensus 296 ~kala-lGAd~V~igr~-----~l~~~---~~~G~----~~v~~~l~~l~~el~~~m~~~G-~~~l~~l~~~~l~~ 357 (370)
.+.+. .|+|+||+||. +++.. ...|. ..+.+.++.+.+++.......| ...+..++++..+.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 99998 49999999994 45531 11111 1145667777777777777665 34677777765544
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=162.54 Aligned_cols=243 Identities=20% Similarity=0.209 Sum_probs=168.0
Q ss_pred eecCceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHhccCC--CceEEEEeecCChHHHH
Q 017492 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVA 139 (370)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~Qly~~~d~~~~~ 139 (370)
....|+++|||.+.+ |.++++.|.++|. ..+.++|.+. ...+.....+ .|..+||+ ..+++...
T Consensus 8 ~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHHH
Confidence 346799999999885 8899999999997 6888887321 1122222222 68999998 67888888
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHH
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (370)
+.+++++++|++.|.||++||..-.|. . +.+..+. .++++..+.++.
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~---------------~----------------~~Gs~L~--~~p~~~~eiv~a 127 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQN---------------G----------------RFGACLM--AEPELVADCVKA 127 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccC---------------C----------------CeeeHHh--cCHHHHHHHHHH
Confidence 999999999999999999999741110 0 0011122 366778889999
Q ss_pred HHHhcCCcEEEEecC------C----HHHHHHHHHcCccEEEEccCCc-cCCC-------CccchHHHHHHHHHHccCCC
Q 017492 220 LQTITKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 220 ir~~~~~Pv~vK~v~------~----~~~a~~a~~aG~d~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~i 281 (370)
+++.+++||.+|... + .+.++.+.++|+|+|.|++.-+ .+.. ..+..++.+.++++.+ .++
T Consensus 128 vr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~i 206 (333)
T PRK11815 128 MKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHL 206 (333)
T ss_pred HHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCC
Confidence 999999999999742 1 2336778899999999953211 1111 1234577888887764 279
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----HH---hcCH----HHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~-----~~---~~G~----~~v~~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
|||++|||++.+|+.++++ |||+||+||+++.. -. ..|. ....++++.+.+.++..... |. .+..
T Consensus 207 PVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 283 (333)
T PRK11815 207 TIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNH 283 (333)
T ss_pred eEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHH
Confidence 9999999999999999987 89999999976532 11 1121 12345566666666665553 43 3666
Q ss_pred hcccce
Q 017492 350 ITRDHI 355 (370)
Q Consensus 350 l~~~~l 355 (370)
++++..
T Consensus 284 ~rk~~~ 289 (333)
T PRK11815 284 ITRHML 289 (333)
T ss_pred HHHHHH
Confidence 665543
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=156.84 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=150.9
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------CCH-
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SSV- 114 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------~~~- 114 (370)
++++|.+|+.||++|+-... .+....+.+.+.|..+++. |... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 57899999999999984322 2445566666678776663 2110 112
Q ss_pred ---HHHhcc------CCCceEEEEeecCChHHHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 115 ---eei~~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
+++.+. ...|.+.|+... .+...+.++++++. |++++.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 223221 125788898643 66666777777765 69999999999963100 0
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH------HHHHHHHHc--CccEEEEcc
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSN 254 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~------~~a~~a~~a--G~d~I~vs~ 254 (370)
. + ..+++...+.++++++.+++||++|+.... +.++.+.++ |+|+|++.|
T Consensus 137 ~--------------------~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 P--------------------P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred c--------------------c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 0 024455677899999999999999997422 224555677 999999876
Q ss_pred CCc---------cC-------CCCccc-------hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 255 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 255 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.-+ +. ..+|.+ .+..+.++++.++.++|||++|||.+++|+++++.+|||+||+||+
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 11 112222 3345566767664469999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 312 VVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 312 ~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
+++ .|+. +++.+.++|+.+|
T Consensus 275 ~~~----~gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGPK----VFARIEKELEDIW 294 (294)
T ss_pred hhh----cCch----HHHHHHHHHHhhC
Confidence 986 2443 6677788887764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=158.25 Aligned_cols=236 Identities=19% Similarity=0.197 Sum_probs=152.3
Q ss_pred chhhHHHhHhhcccceeeeccc-CCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CC
Q 017492 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (370)
Q Consensus 32 ~~~t~~~n~~~~~~i~l~pr~l-~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~ 109 (370)
-|.+.+-....+..+...|-.. +...+.|++|+++|.+++.||++|.- .. .+....+.+.+.|..+++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~AsG-~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAG-FD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCcC-CC------CCHHHHHHHHHCCCcEEEEecc
Confidence 3445555555665555555221 45678899999999999999988762 11 2334445545778776552 22
Q ss_pred CC----------------------------CC----HHHHhccC--CCceEEEEeecCC------hHHHHHHHHHHHHcC
Q 017492 110 ST----------------------------SS----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (370)
Q Consensus 110 ~~----------------------------~~----~eei~~~~--~~~~~~Qly~~~d------~~~~~~~l~ra~~~G 149 (370)
.. .. ++++.+.. ..|.++|+..... .+...+.++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 11 01 12232221 2567888864321 2333344444433 3
Q ss_pred CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC----
Q 017492 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (370)
Q Consensus 150 ~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~---- 225 (370)
++++.+|+.||..... +. ..+++...+.++++++.++
T Consensus 161 ad~ielN~scP~~~g~----------------~~-----------------------~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------RD-----------------------LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------cc-----------------------ccCHHHHHHHHHHHHHHHhhccc
Confidence 8899999999863100 00 0133334567899998875
Q ss_pred -CcEEEEecCC------HHHHHHHHHcCccEEEEccCCc-------------cCCCCcc----chHHHHHHHHHHccCCC
Q 017492 226 -LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRI 281 (370)
Q Consensus 226 -~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~i 281 (370)
+||++|.... .+.++.+.++|+|+|+++|.-. .+...|+ .+++.+.++++.++.++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999732 2346788899999999987411 0001222 24677788888776579
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||+++|||++++|+.+++.+|||+|++||++++
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 999999999999999999999999999999986
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=165.07 Aligned_cols=158 Identities=27% Similarity=0.331 Sum_probs=123.5
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CC--CCccchHHHHHHHHHHcc-CCCc
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYVPATIMALEEVVKATQ-GRIP 282 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~-~~ip 282 (370)
...++.+++||+.+ +.+|+...+.+.+.++.+.++|+|+|.|.-..|+ +. ..+.|.+.++.++.++.. ..+|
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~ 332 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCc
Confidence 34677899999998 7999999999999999999999999998754443 11 236688899999888653 3799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH---------------------------HHH-----------------h
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------A 318 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~---------------------------~~~-----------------~ 318 (370)
||++|||+++.|+.|+|++||++||+|+.|.- ++. .
T Consensus 333 via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~ 412 (479)
T PRK07807 333 VWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFE 412 (479)
T ss_pred EEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCC
Confidence 99999999999999999999999999998731 111 0
Q ss_pred cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc--eeecc---CCCCCCCCC
Q 017492 319 EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH--IVTEW---DASLPRPVP 368 (370)
Q Consensus 319 ~G~~~-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~--l~~~~---~~~~~~~~~ 368 (370)
.|.++ +..++..|...||..|.++|+++|.||+..- +.... .-++|-+++
T Consensus 413 eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~g~~e~~~h~~~ 478 (479)
T PRK07807 413 EGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAAGYAEGRPLPTS 478 (479)
T ss_pred CCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECccccccCCCCCCC
Confidence 12111 7788999999999999999999999999763 32221 345555554
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=163.19 Aligned_cols=262 Identities=21% Similarity=0.215 Sum_probs=175.8
Q ss_pred eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017492 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (370)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (370)
..+..||.++.|+++.++ ++...++|+++.+.|..+..++.. ...+.. + .....+.|+- ......+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGG-e~~~~~-~-~~~s~I~Qva-SGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGG-EDPERY-E-DGRSAIKQVA-SGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCC-CCHHHh-c-cccceEEEec-cccCccCHHHhC----
Confidence 567789999999998865 557889999999999887777664 444443 1 1245677853 344455444443
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccch-hhHHHhhhcCCCC-ccHHH----HHHH
Q 017492 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRS-LSWKD----VKWL 220 (370)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-~~~~~----i~~i 220 (370)
.++++.|-+..-. ++- .+=++|. +++. .+ ...... .....+++..+.+ ++.++ |.+|
T Consensus 234 -~a~~ieIKiaQGA---KPG---eGG~Lpg~KV~~-~I--------A~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dL 297 (485)
T COG0069 234 -NADAIEIKIAQGA---KPG---EGGQLPGEKVTP-EI--------AKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDL 297 (485)
T ss_pred -ccceEEEEeccCC---CCC---CCCCCCCccCCH-HH--------HHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHH
Confidence 3444555443211 100 0111221 1110 00 000000 0001223323333 25554 5666
Q ss_pred HHhc-CCcEEEEecC--CHHHHHH-HHHcCccEEEEccC-CccC-------CCCccchHHHHHHHHHHc-----cCCCcE
Q 017492 221 QTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 283 (370)
Q Consensus 221 r~~~-~~Pv~vK~v~--~~~~a~~-a~~aG~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipv 283 (370)
|+.. ..+|.||.+. ..+.+.. +.++++|.|+|+++ ||+. .+.|.|....|++..+.+ ++++.|
T Consensus 298 k~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l 377 (485)
T COG0069 298 KEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKL 377 (485)
T ss_pred HhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEE
Confidence 6665 4679999984 3455444 88999999999998 4552 246777777888888765 568999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 334 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~~v~~~l~~l~~e 334 (370)
+++||++|+.||+|+++||||.|.+|++.|.++.|. .++.|.+++..+.+|
T Consensus 378 ~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e 457 (485)
T COG0069 378 IADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEE 457 (485)
T ss_pred EecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988762 357899999999999
Q ss_pred HHHHHHHcCCCChhhhcccc
Q 017492 335 FELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 335 l~~~m~~~G~~~l~~l~~~~ 354 (370)
++.+|+.+|.+++++|.++.
T Consensus 458 ~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 458 LRELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHHhCCCCHHHHhcch
Confidence 99999999999999999664
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=153.40 Aligned_cols=207 Identities=23% Similarity=0.295 Sum_probs=147.3
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC------------------------------
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST------------------------------ 111 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~------------------------------ 111 (370)
|+|+|.+++.||++|+.... .+....+.+.++|..+++. |...
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999986543 2456777777887776652 2110
Q ss_pred -----CCHH----HHhcc----CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc
Q 017492 112 -----SSVE----EVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (370)
Q Consensus 112 -----~~~e----ei~~~----~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~ 178 (370)
..++ ++.+. ...+..+||. ..+.+...+.++++++.|++++.+|+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 0111 22211 1256788986 4567788888999999999999999999963110
Q ss_pred cccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec--CC----HHHHHHHHHcCccEEEE
Q 017492 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIV 252 (370)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v--~~----~~~a~~a~~aG~d~I~v 252 (370)
+. + ..++.+..+.++++|+.+++||++|.. .+ .+.++.+.++|+|+|++
T Consensus 141 ---~~--------------------~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 013345667899999988999999976 33 34578889999999999
Q ss_pred ccCC-ccC------------CC---Ccc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 253 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 253 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+|+- ++. .. .+. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8752 110 01 111 135667777777644799999999999999999999999999999999
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=148.45 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=147.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC------CHH--HHhccC--CCceEEEEeecCChHHHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~------~~e--ei~~~~--~~~~~~Qly~~~d~~~~~~~l 142 (370)
|+++|||.+.+ |.++++.+.++|...+.++|... .-+ ...... +.+..+||. ..+.+...+..
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68899998764 88999999999988888877321 111 111111 257889987 56778888899
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++++++|++.+.||+.||..-.|. .++ +..+ ..++.+..+.++++++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l--~~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAAL--LKDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehh--cCCHHHHHHHHHHHHH
Confidence 999999999999999998531110 000 0001 1355667888999999
Q ss_pred hcCCcEEEEecCCH-------HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 223 ITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 223 ~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
.++.|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+..+++.. ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 98999999975322 23567888999999995432222234456778888888765 7999999999999999
Q ss_pred HHHHHh-CCCEEEEcHHHHH
Q 017492 296 FKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 296 ~kalal-GAd~V~igr~~l~ 314 (370)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999875
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=145.94 Aligned_cols=188 Identities=16% Similarity=0.145 Sum_probs=132.8
Q ss_pred ceeecccccccccCChhhHHHHHH-HHHcCCceeecCCCC----------------------CCHHHHh------ccCCC
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARA-ASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~a-a~~~G~~~~~s~~~~----------------------~~~eei~------~~~~~ 123 (370)
|+++|||+|.+ +..++++ |...|+. +++.++. .+++.+. ...+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~-~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLV-FLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEE-EEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999999875 6688884 5555554 4543221 1222221 11124
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
+..+||+ ..+.+...+.++++++. ++.|.+|+.||... +... +.++.
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~~~----------------g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MVEA----------------GAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------HhcC----------------CcchH
Confidence 7899998 57788888888888774 69999999999731 0000 11222
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEecC-----CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~-----~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (370)
+. .+++...+.++.+++ .++||++|... ..+.++.+.++|+|+|.+++. . .+....++.+.+++ .
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T- 190 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C-
Confidence 33 366667788999988 59999999863 345578899999999877542 1 11245667777765 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
++|||+.|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=171.12 Aligned_cols=256 Identities=20% Similarity=0.148 Sum_probs=171.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCc
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ 151 (370)
.+|.++.|++++++ ++...++|+++.+.|+....++.. ...++... .....++|+- ......+.+.+. .++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~Qia-SGrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVA-SGRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEcc-CCcCCCCHHHhc-----cCC
Confidence 46899999999765 557889999999999997777664 55555532 2235678864 233344444443 356
Q ss_pred EEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCc-cHHH----HHHHHHhc-
Q 017492 152 AIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKWLQTIT- 224 (370)
Q Consensus 152 ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~----i~~ir~~~- 224 (370)
.|.|.+.--.. +. .|-.+|. +++. .+..+. ........+++..+++. +.++ |.++|+..
T Consensus 930 ~ieIKi~QGAK---PG---~GG~Lpg~KV~~-~IA~~R-------~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~ 995 (1485)
T PRK11750 930 VLQIKVAQGAK---PG---EGGQLPGDKVNP-LIARLR-------YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNP 995 (1485)
T ss_pred EEEEEecCCCC---CC---CCCcCccccCCH-HHHHHc-------CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCC
Confidence 67766542210 00 0111221 1110 000000 00001112333344444 5554 56667666
Q ss_pred CCcEEEEecCC--H-HHHHHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEEEecC
Q 017492 225 KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGG 288 (370)
Q Consensus 225 ~~Pv~vK~v~~--~-~~a~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GG 288 (370)
+.||.||.+.. . ..+.-+.++|+|.|+|++|. |+. .+.|.|....|.++.+.+ ++++.++++||
T Consensus 996 ~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Gg 1075 (1485)
T PRK11750 996 KALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075 (1485)
T ss_pred CCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCC
Confidence 57999999743 2 23445778999999999984 442 235666666788777765 46899999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHHHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAMA 340 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------G~~~v~~~l~~l~~el~~~m~ 340 (370)
++|+.|++||++||||.|.+|+++|.++.|. ..+.|.+++..+.+|++.+|+
T Consensus 1076 l~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la 1155 (1485)
T PRK11750 1076 LKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMA 1155 (1485)
T ss_pred cCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988762 136789999999999999999
Q ss_pred HcCCCChhhh
Q 017492 341 LSGCRSLKEI 350 (370)
Q Consensus 341 ~~G~~~l~~l 350 (370)
.+|.++++||
T Consensus 1156 ~lG~~s~~el 1165 (1485)
T PRK11750 1156 QLGVRSLEDL 1165 (1485)
T ss_pred HhCCCCHHHh
Confidence 9999999999
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=152.41 Aligned_cols=147 Identities=26% Similarity=0.351 Sum_probs=117.6
Q ss_pred cCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----C--CCCccchHHHHHHHHHHcc-
Q 017492 207 QIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ- 278 (370)
Q Consensus 207 ~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~- 278 (370)
++...+..++|+|+++.+ +++|+...+.+.+.|+.++++|||++.|....|+ | ...|.|...++.++.+...
T Consensus 273 qGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 273 QGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred CCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 455667889999999998 6788888899999999999999999999765553 2 3356666667766666542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHH------Hh--------------
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL------AA-------------- 318 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~------~~-------------- 318 (370)
..+|||+||||++..++.|||.+||++||+|.-+- +++ ..
T Consensus 353 ~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvk 432 (503)
T KOG2550|consen 353 FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVK 432 (503)
T ss_pred cCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEe
Confidence 37999999999999999999999999999998441 111 10
Q ss_pred --cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|. -.+.+++..+..+++..++..|++++++++..
T Consensus 433 iAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 433 IAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred eccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 011 13888999999999999999999999999864
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-15 Score=145.72 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHhcC-------CcEEEEecCC------HHHHHHHHHcCccEEEEccCCc-------------cCCCCccc
Q 017492 212 LSWKDVKWLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA 265 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-------~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg-------------~~~~~~~~ 265 (370)
...+.++++++.++ +||++|+..+ .+.++.+.++|+|+|++.|+-. ...-+|++
T Consensus 190 ~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~ 269 (335)
T TIGR01036 190 ELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKP 269 (335)
T ss_pred HHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHH
Confidence 34556788877765 9999999743 2346788999999999998521 00011222
Q ss_pred ----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+..+.++.+.+.+++|||+.|||.+++|+.+++.+||++|++||++++
T Consensus 270 i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 270 LQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 3345666666665679999999999999999999999999999999986
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=145.91 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=85.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecC---CH---HHHHHHHHcCccEEEEccCCcc----------CC----C---Ccc----c
Q 017492 213 SWKDVKWLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QL----D---YVP----A 265 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~---~~---~~a~~a~~aG~d~I~vs~~gg~----------~~----~---~~~----~ 265 (370)
..+.++++++..++||++|+.. .. ..+..+.+.|+++|++.|.-.. .. . +|+ .
T Consensus 150 ~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~ 229 (295)
T PF01180_consen 150 VAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI 229 (295)
T ss_dssp HHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH
Confidence 4556788888889999999975 22 2345556889999998774211 11 1 122 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
++..+.++++.++.++|||++|||.+++|+.++|.+||++|++++.+++. |+. +++.+.+||+.+|
T Consensus 230 aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 230 ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 45667777777755799999999999999999999999999999999873 554 6778888888877
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=143.60 Aligned_cols=206 Identities=24% Similarity=0.285 Sum_probs=153.3
Q ss_pred EcCeeecCce-eecccccccccCChhhHHHHHHHHHcCCceeecCCCCC-C-H--HHH----hccCC--CceEEEEeecC
Q 017492 65 VLGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-V--EEV----ASTGP--GIRFFQLYVYK 133 (370)
Q Consensus 65 l~g~~l~~Pi-~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~-~-~--eei----~~~~~--~~~~~Qly~~~ 133 (370)
+|-.+...|. ++|||-..+ |+++++.++..|...+.+.|-.. + . |.- ....+ .|.++|+- .+
T Consensus 11 ~f~~~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~n 83 (358)
T KOG2335|consen 11 IFWSKQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GN 83 (358)
T ss_pred hhhhhcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CC
Confidence 3344444443 589997664 88999999999998888876210 0 0 110 11122 68999965 78
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
|.+.+.+.++.+...+ ++|.||++||.. . ..+.+ .+.+++ .++++.
T Consensus 84 dp~~ll~Aa~lv~~y~-D~idlNcGCPq~---~-a~~g~---------------------------yGa~L~--~~~eLv 129 (358)
T KOG2335|consen 84 DPENLLKAARLVQPYC-DGIDLNCGCPQK---V-AKRGG---------------------------YGAFLM--DNPELV 129 (358)
T ss_pred CHHHHHHHHHHhhhhc-CcccccCCCCHH---H-HhcCC---------------------------ccceec--cCHHHH
Confidence 8898888888877776 999999999952 0 01111 122233 245666
Q ss_pred HHHHHHHHHhcCCcEEEEec------CCHHHHHHHHHcCccEEEEccCCccC----CCCccchHHHHHHHHHHccCCCcE
Q 017492 214 WKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v------~~~~~a~~a~~aG~d~I~vs~~gg~~----~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
-++++.++..++.||.+|.. -+.+.++.+.++|++.++| ||.+. ...++..|+.+..+++.+++ +||
T Consensus 130 ~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipv 206 (358)
T KOG2335|consen 130 GEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPV 206 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcE
Confidence 77899999999999999985 3456799999999999999 77652 23678899999999998854 999
Q ss_pred EEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q 017492 284 FLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 314 (370)
Q Consensus 284 i~~GGI~~~~dv~kala-lGAd~V~igr~~l~ 314 (370)
++.|+|.+..|+..++. .|||+||.|+.+|+
T Consensus 207 iaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 207 IANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred EeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 99999999999999999 99999999996553
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-14 Score=137.54 Aligned_cols=183 Identities=22% Similarity=0.243 Sum_probs=130.8
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~ 136 (370)
++|| +..||+.+||++.+ +..|+.++.++|...+++.. ..++|++ .+....|+.+.+....+.
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~- 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPF- 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-
Confidence 3455 45899999998743 45899999999999888753 2344433 222234666665432221
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
..+.++.+.+.|++.+.++.+ .+ .+.
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~ 101 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKY 101 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHH
Confidence 234555566677766554211 11 235
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
++++++. +++|+. .+.+.++++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||+.|||.++.|
T Consensus 102 i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6777665 677764 568899999999999999999775 3432 2345788999999887 799999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~ 316 (370)
+.+++++||++|++|+.|+...
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred HHHHHHcCCCEeecchHHhccc
Confidence 9999999999999999998654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=136.98 Aligned_cols=199 Identities=24% Similarity=0.293 Sum_probs=115.5
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~ 136 (370)
.+|| ++.||+.+||++. . .-.|+-+.+++|...+++.. ..+.+++ .+..+.|+.++++.+....
T Consensus 6 ~~lg--i~~PIiqapM~~i--s----~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLG--IKYPIIQAPMGGI--S----TPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TTT--S----SHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhC--CCcCEEcCCCCCC--C----hHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 3455 4679999999874 3 33799999999999999854 3444433 2333457888887654433
Q ss_pred HHH----------HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CCccccccccccccCccccccchhhHHHhh
Q 017492 137 VVA----------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 137 ~~~----------~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
... ..++...+.+.. -+..+...+.. |+.+ ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v------------------------~~ 119 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKPDVV------------------------SF 119 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--SEE------------------------EE
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcc-------------cccccccccccceEEE------------------------Ee
Confidence 322 111122222222 00000000000 0000 00
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCC-CCccchHHHHHHHHHHccCCCc
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~ip 282 (370)
..+.| ..+.++.+++ .++.++. .+.+.++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|
T Consensus 120 ~~G~p--~~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iP 192 (330)
T PF03060_consen 120 GFGLP--PPEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIP 192 (330)
T ss_dssp ESSSC---HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-
T ss_pred ecccc--hHHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCc
Confidence 00111 2456777765 4777765 478999999999999999999874 56543 222 5778889999888 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
||+.|||.++.++..+|++||++|++|+.|+..
T Consensus 193 ViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 193 VIAAGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred EEEecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 999999999999999999999999999999854
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=131.55 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=115.1
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
.+..+|+- ..+.+...+.++.+++ +++.+.||+.||+. ++... +.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~----------------g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEI----------------GIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCC----------------CCch
Confidence 57899986 5677777777777755 89999999999973 01100 1122
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC------HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (370)
.+. .|++...+.++.+++ .++||++|+... .+.++.+.++|+|+|.|. .++.. .+...++.+.++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCCC-CchhhHHHHHHHHHh
Confidence 222 366667778888884 589999999742 255889999999999994 32210 122678899999988
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 277 ~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
++ .+|||++|||.+.+|+.+++..|||+||+||+.+.
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 72 49999999999999999999999999999998875
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=127.18 Aligned_cols=121 Identities=28% Similarity=0.454 Sum_probs=95.4
Q ss_pred CCcEEEEecCCH-----HH-HHHHHHcCccEEEEccCCc-c----------CCC---Cccc----hHHHHHHHHHHccCC
Q 017492 225 KLPILVKGVLTA-----ED-ARIAVQAGAAGIIVSNHGA-R----------QLD---YVPA----TIMALEEVVKATQGR 280 (370)
Q Consensus 225 ~~Pv~vK~v~~~-----~~-a~~a~~aG~d~I~vs~~gg-~----------~~~---~~~~----~~~~l~~i~~~~~~~ 280 (370)
+.|+.+|...+. +| +..+.+.+.|+++++|.-- | .-. +|++ +...++.+....+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 459999986432 23 5556789999999998421 1 001 2222 445677777777889
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
||||..|||.+|.|+.+-+.+||+.|+++++|.| .|+. +++.++.||...|...|++++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999876 3553 789999999999999999999998764
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=119.12 Aligned_cols=188 Identities=24% Similarity=0.292 Sum_probs=128.2
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChHHHHHHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~~~~~~l~ 143 (370)
..|++.|||.+.+ +..+++++.+.|....++.. ..+.+++ .+..+.+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 55899999999865555422 2233322 22221245577765332134556788
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+.++|++.+.++-+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8889999988764210 1223444443
Q ss_pred cCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh
Q 017492 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal 301 (370)
.+++++++ +.+.++++.+.+.|+|+|.+.+. +|.........++.+.++++.. ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 36777765 56778899999999999998653 2221111134577888888776 7999999999999999999999
Q ss_pred CCCEEEEcHHHHHHHHhcCHH
Q 017492 302 GASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 302 GAd~V~igr~~l~~~~~~G~~ 322 (370)
|||+|++||+++....+.+..
T Consensus 178 GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 178 GADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCcEEEEchhhhcCcccCCCH
Confidence 999999999999865554443
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=124.02 Aligned_cols=101 Identities=32% Similarity=0.448 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCC--CCccchHHHHHHHHHHccCC-CcEEEecC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvi~~GG 288 (370)
.+.++.+++ .+..++.+ +.+...|+++.++|+|+|++.+. ||+.- +..+++..+++++++++ + +|||+.||
T Consensus 117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 456777776 56776655 67899999999999999999764 45432 34567788999999998 6 99999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
|.++.++..|+++||++|++|+.|+..-.|
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 999999999999999999999999865433
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-11 Score=115.76 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=122.9
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-CCCceEEEEeecCChHHHHHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~~~~~~~Qly~~~d~~~~~~~l 142 (370)
..||+.+||++.+ + .-.|+.+.+++|...+++.. ..+.|++. +. ...|+.+.|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 5799999998754 1 13799999999988777643 34444322 21 2356777764332223334556
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
+.+.+.+.+.+.++.+ .|. .++++++
T Consensus 76 ~vi~e~~v~~V~~~~G--------------------------------------------------~P~----~~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGG--------------------------------------------------RPD----QARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCC--------------------------------------------------ChH----HHHHHHH
Confidence 6666666665543311 111 1355554
Q ss_pred hcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHcc--------CCCcEEEecCCCCH
Q 017492 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRG 292 (370)
Q Consensus 223 ~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvi~~GGI~~~ 292 (370)
.+++++.. +.+++.|+++.++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~~~-v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTYLH-VPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEEEE-eCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 47777633 68899999999999999999875 5553 22344555666655441 26999999999999
Q ss_pred HHHHHHHHhCC--------CEEEEcHHHHHHH
Q 017492 293 TDVFKALALGA--------SGIFIGRPVVYSL 316 (370)
Q Consensus 293 ~dv~kalalGA--------d~V~igr~~l~~~ 316 (370)
..+..++++|| ++|+||+.|+..-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 99999999999 7999999998743
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=115.89 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=133.2
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-C-CCceEEEEeec-C
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~-~~~~~~Qly~~-~ 133 (370)
+++| +..|++.+||+++ .. ...|+.+..++|....++... .+++++. +. . ..|+.++|+.. .
T Consensus 8 ~~lg--iryPii~gpMa~G-is----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYG--LRYAYVAGAMARG-IA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhC--CCccEECCcccCC-CC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 3455 4689999999832 23 447999999999998887653 4555543 22 2 35888998753 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cCC-CCCcchhHHhhhhcCC-CCc-cccccccccccCccccccchhhHHHhhhcC
Q 017492 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTL-PPF-LTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~it--vd~-p~~g~r~~d~~~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (370)
+++...+.++...+.|++.+... ++. |.. .+.++ .|+.+ +.+ +...+. .... . +..+..+. .
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~------Viak--V-sr~evAs~-~ 146 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANR------IIAK--V-SRPEVAEA-F 146 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccce------EEEe--c-CChhhhhh-h
Confidence 44445567788888898876543 111 111 11111 01100 000 000000 0000 0 00011110 1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEEccC-CccCCCCccchHHHHHHHHH---Hc------
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSNH-GARQLDYVPATIMALEEVVK---AT------ 277 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~---~~------ 277 (370)
......+.++++++. ++.|.++|+.+.+.| +|.|++... ||+. +..++...++.+.+ .+
T Consensus 147 f~ppp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~ 216 (418)
T cd04742 147 MSPAPERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGY 216 (418)
T ss_pred cCCCCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhcccc
Confidence 122356678888764 233999999999999 599998742 4543 22344555555544 22
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..++||++.|||.++.++..++++||++|++|+.|+..
T Consensus 217 ~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 217 RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 12699999999999999999999999999999999864
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=117.46 Aligned_cols=227 Identities=18% Similarity=0.163 Sum_probs=138.2
Q ss_pred ceeEcCeeecCceeeccccccccc----CC-hhhHHHHHHHHHcCCceeecCCCCC--------------CH---H---H
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------SV---E---E 116 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~----~~-~~e~~la~aa~~~G~~~~~s~~~~~--------------~~---e---e 116 (370)
..+|.+.++++-|+.|||+..... .+ +..+..-+.-++-|+.+++++.... +. + +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 467788999999999999532211 11 2234556666667888877653110 11 1 1
Q ss_pred Hhcc---CCCceEEEEeecCC---------------------------hHHH-------HHHHHHHHHcCCcEEEEecCC
Q 017492 117 VAST---GPGIRFFQLYVYKD---------------------------RNVV-------AQLVRRAERAGFKAIALTVDT 159 (370)
Q Consensus 117 i~~~---~~~~~~~Qly~~~d---------------------------~~~~-------~~~l~ra~~~G~~ai~itvd~ 159 (370)
+.+. .....++||+-... .+.+ .+..++|+++||+.+.||...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2221 12456888853111 1112 223356777999999999763
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC-----
Q 017492 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL----- 234 (370)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~----- 234 (370)
-. +-+.|--|. .+.+ ++.-+ +... ....|..++++.||+.++.||.+|+..
T Consensus 166 Gy-------Ll~qFlSp~-~N~R------------tD~yG-Gsle---nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 GY-------LINEFLSPL-SNKR------------TDEYG-GSPE---NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ch-------HHHHhcCCc-cCCc------------CCCCC-CCHH---HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 112221110 0000 00000 0111 123467889999999999999999863
Q ss_pred ---CHHH----HHHHHHcCccEEEEccCCccC--CCC-ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-C
Q 017492 235 ---TAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (370)
Q Consensus 235 ---~~~~----a~~a~~aG~d~I~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-A 303 (370)
+.++ ++.+.++|+|.|.|+...-.. ... ....++...++++.+ ++||++.|+|++++++.++|+-| |
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 4444 567788999999996432110 111 111345667777776 79999999999999999999987 9
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|++||+++.
T Consensus 300 D~V~~gR~~ia 310 (337)
T PRK13523 300 DLIFIGRELLR 310 (337)
T ss_pred ChHHhhHHHHh
Confidence 99999999984
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=102.99 Aligned_cols=185 Identities=23% Similarity=0.232 Sum_probs=121.6
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCceeecCC-CC-------CC---HHHHhccCCCceEEEEeecCChHHHHHHH
Q 017492 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-ST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 74 i~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~-~~-------~~---~eei~~~~~~~~~~Qly~~~d~~~~~~~l 142 (370)
|++++|.++.. +.....++.+.+.|+.+..... .. .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765531 2345788888888876544322 10 11 33333333467889998655444444445
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++++++|++.+.++..++.. +.+..+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 78889999999987654320 1224667889998
Q ss_pred hc-CCcEEEEecCCHHHHHH-HHHcCccEEEEccCCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH
Q 017492 223 IT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (370)
Q Consensus 223 ~~-~~Pv~vK~v~~~~~a~~-a~~aG~d~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ka 298 (370)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..+.+. .++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHH
Confidence 87 89999997643322222 688999999998764433222221 12333333333 37999999999999999999
Q ss_pred HHhCCCEEEEcH
Q 017492 299 LALGASGIFIGR 310 (370)
Q Consensus 299 lalGAd~V~igr 310 (370)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=100.94 Aligned_cols=98 Identities=22% Similarity=0.245 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC--CCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.++++++..++|++ ..+.+.++++.+.++|+|+|.++++|-+.. ......++.+.++++.+ ++||++.|||++
T Consensus 108 ~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t 184 (221)
T PRK01130 108 AELVKRIKEYPGQLLM-ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINT 184 (221)
T ss_pred HHHHHHHHhCCCCeEE-EeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCC
Confidence 3456777664467776 457889999999999999998765443221 22344567888888877 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
++|+.+++++|||+|++|+.++.
T Consensus 185 ~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 185 PEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHHCCCCEEEEchHhcC
Confidence 99999999999999999998764
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=107.26 Aligned_cols=222 Identities=19% Similarity=0.178 Sum_probs=131.6
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCC-Cc-eEEEEeecC-
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK- 133 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~-~~-~~~Qly~~~- 133 (370)
+++| +..|++.+||+++ .. ...|+.+..++|....++.. ..+++++. +..+ ++ +.++|+.+.
T Consensus 13 ~~lg--iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhC--CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 3455 4679999999832 23 44799999999999888865 34566543 2223 35 889987643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cC-CCCCcchhHHhhhhcCCC-C-ccccccccccccCccccccchhhHHHhhhcC
Q 017492 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLP-P-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~it--vd-~p~~g~r~~d~~~~~~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (370)
+.+...+.++.+.+.|++.+... ++ +|.. .+.+. .++... . .+...+ ..... . +..+.... .
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~Viak--V-sr~~vAs~-f 151 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAK--V-SRPEVAEA-F 151 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEe--c-CCHHHHHH-h
Confidence 33334456677778888876543 11 1211 11110 011000 0 000000 00000 0 00111111 0
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCc-cEEEEcc-CCccCCCCccchHHHHHHHHH---Hc------
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA-AGIIVSN-HGARQLDYVPATIMALEEVVK---AT------ 277 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~-d~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~------ 277 (370)
.....-+.++.+.+. ++.|+++|+.+.+.|+ |.|++.. .||+. +..++...++.+.+ .+
T Consensus 152 ~~p~p~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y 221 (444)
T TIGR02814 152 MSPAPAHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGY 221 (444)
T ss_pred cCCCcHHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccC
Confidence 111234567777653 2339999999999995 8888863 25543 23355566776643 33
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
...+||++.|||.++.++..++++|||+|++|+.|+...
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 126899999999999999999999999999999998643
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=105.64 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCccHHHHHHHHHhcCC--cEEEEecC--------CHHH----HHHHHHcC-ccEEEEccCCccCC----------CCcc
Q 017492 210 RSLSWKDVKWLQTITKL--PILVKGVL--------TAED----ARIAVQAG-AAGIIVSNHGARQL----------DYVP 264 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~--Pv~vK~v~--------~~~~----a~~a~~aG-~d~I~vs~~gg~~~----------~~~~ 264 (370)
..+..++++.+|+.++. ||.+|... +.++ ++.+.++| +|.|.||...-... ....
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPP 270 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCc
Confidence 35678899999999854 55555542 3333 56778898 89999963211110 0111
Q ss_pred -chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 265 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 265 -~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
..++....+++.+ ++||+++|||++.+++.++++.| ||+|++||+++.
T Consensus 271 ~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 271 GPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred chhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1356667777777 79999999999999999999976 999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=105.88 Aligned_cols=104 Identities=22% Similarity=0.228 Sum_probs=79.7
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEec--------CCHHH----HHHHHHcCccEEEEccCCcc--CC-CCcc-chHHHH
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMAL 270 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~~gg~--~~-~~~~-~~~~~l 270 (370)
...+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.|+.++.+ +. ...+ ...+.+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 4456789999999999 789999964 23444 45677899999999754322 11 1111 124566
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.++++.+ ++||+++|||.+++++.++|+.| ||+|++||+++.
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 7777776 79999999999999999999998 999999999985
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-09 Score=97.18 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++..++|+++ .+.+++++..+.++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 455677887766678776 4678999999999999999776554322 122345678888888876 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++|+.+++++|||+|++|++++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999874
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-10 Score=107.79 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=79.9
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCCCC--------ccchHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIM 268 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~--------~~~~~~ 268 (370)
.+..+.++.+|+.+ ++||.+|... +.++ ++.+.++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 45788999999998 7899999862 3344 677889999999997643322111 122445
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 269 ~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+..+++.+ ++||+++|||++.+++.++++. |||.|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 677777776 7999999999999999999998 6999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-09 Score=101.62 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCccHHHHHHHHHhc--CCcEEEEecC------------CHHH----HHHHHHcCccEEEEccCCc-cCCCCccchHHHH
Q 017492 210 RSLSWKDVKWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMAL 270 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~--~~Pv~vK~v~------------~~~~----a~~a~~aG~d~I~vs~~gg-~~~~~~~~~~~~l 270 (370)
..|..++++.||+.+ +.||.+|... ++++ ++.+.++|+|.|.++...- .+... ...+...
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~-~~~~~~~ 272 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFE-GSELNLA 272 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcC-ccchhHH
Confidence 356789999999998 4899999862 2333 4556789999999975311 11111 1133455
Q ss_pred HHHHHHccCCCcEEEecCC------------------CCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI------------------~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
..+++.+ ++||+++|+| ++++++.++|+-| ||+|++||+++.
T Consensus 273 ~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 273 GWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 6666666 7999999999 6999999999977 999999999885
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-09 Score=103.43 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=78.5
Q ss_pred CCccHHHHHHHHHhcCC-cEEEEecC-----------CHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 210 RSLSWKDVKWLQTITKL-PILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~-Pv~vK~v~-----------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
..|..+.++.+|+.++. ||.+|... +.++ ++.+.+.|+|.|.|+.. ..........++...++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHH
Confidence 35678899999999854 89999852 3333 57788899999999642 22111233455677788
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++++ ++||+++|||+ ++++.++|+.| ||+|++||+++.
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 8887 89999999997 99999999987 999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=100.93 Aligned_cols=234 Identities=17% Similarity=0.210 Sum_probs=149.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC-------HH-HHhccC--CCceEEEEeecCChHHHHHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-------VE-EVASTG--PGIRFFQLYVYKDRNVVAQL 141 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~-------~e-ei~~~~--~~~~~~Qly~~~d~~~~~~~ 141 (370)
--.++||.+.. ||+.++|.|.++|+..+.|+|+-+. .| .+.+.. ...+.+||-. ...+...+.
T Consensus 265 ~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ka 337 (614)
T KOG2333|consen 265 DKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAAKA 337 (614)
T ss_pred cceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHHHH
Confidence 45789998654 5889999999999999999986432 11 122222 2578899974 344444444
Q ss_pred HHHH-HHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 142 VRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 142 l~ra-~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
++.+ +...++.|.||++||.. +- | + . |.+..+.. .|......++..
T Consensus 338 aq~i~e~~~VDFIDlN~GCPID------lv--y--------~-----------q----G~GsALl~--rp~rl~~~l~~m 384 (614)
T KOG2333|consen 338 AQVIAETCDVDFIDLNMGCPID------LV--Y--------R-----------Q----GGGSALLN--RPARLIRILRAM 384 (614)
T ss_pred HHHHHhhcceeeeeccCCCChh------ee--e--------c-----------c----CCcchhhc--CcHHHHHHHHHH
Confidence 4433 34679999999999962 11 0 0 0 11122221 222234455555
Q ss_pred HHhc-CCcEEEEecCC--------HHHHHHHH-HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 221 QTIT-KLPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 221 r~~~-~~Pv~vK~v~~--------~~~a~~a~-~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.... .+||.||+... .+-...+. +.|+++|++.+...-|.++-.+.|+.+.++.+.+...+|+|+.|.|-
T Consensus 385 ~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~ 464 (614)
T KOG2333|consen 385 NAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDIL 464 (614)
T ss_pred HHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccc
Confidence 5555 46999998632 12234444 89999999933323366778889999999999886669999999999
Q ss_pred CHHHHHHHHHhC--CCEEEEcH-----HHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 291 RGTDVFKALALG--ASGIFIGR-----PVVYSLAAEGE---KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 291 ~~~dv~kalalG--Ad~V~igr-----~~l~~~~~~G~---~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+.+|-.+.+..+ .+.||||| ||+|.-.-.-. ..-.+-++.|++=.+--|+..|..
T Consensus 465 S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 465 SWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred cHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 999988888866 89999999 67764221100 001123455555555556666643
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=89.80 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++.. -+++--+.+.|++..+.++|+|.|-....|.+. .. ..|.++.+.++++. .+|||+.|+|.
T Consensus 81 l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~ 154 (192)
T PF04131_consen 81 LEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIH 154 (192)
T ss_dssp HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--
T ss_pred HHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCC
Confidence 355789999987 556688999999999999999999876666542 22 56788899988763 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++++.+++.+||++|.+|++.-.
T Consensus 155 tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CHHHHHHHHhcCCeEEEECcccCC
Confidence 999999999999999999998743
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-10 Score=105.12 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=166.6
Q ss_pred ecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH--Hhcc-------
Q 017492 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE--VAST------- 120 (370)
Q Consensus 50 pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee--i~~~------- 120 (370)
|..|..++++|.+++.-|++.+.|+.++.-. |.....+.+-|-..|-++.+.-. ..+++ |...
T Consensus 92 ~k~~~~l~~ie~~vd~~G~k~~npf~~~s~P------p~t~~~lm~raf~~gwg~l~~kt--~~ld~~kV~nv~prvar~ 163 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQKPANPFHQKSKP------PPTIAELMDRAFPSGWGYLEQKT--KILDENKVRNVEPRVARS 163 (471)
T ss_pred hhhhcchhhhhhhccccCccCCCccccCCCC------CCccHHHHHhhhhcccchhheee--eecchhhheecccceeec
Confidence 4555667889999999999999999886521 22244677777777777665321 11110 0000
Q ss_pred -------CC-CceEEEE--eec-----------------------------CChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 121 -------GP-GIRFFQL--YVY-----------------------------KDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 121 -------~~-~~~~~Ql--y~~-----------------------------~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
.| .+.|..+ ... .+.....++..+.+++|++.+.+|+.||.
T Consensus 164 ~t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscph 243 (471)
T KOG1799|consen 164 PTKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPH 243 (471)
T ss_pred cCCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCC
Confidence 00 0111100 000 01223345666777778888888777775
Q ss_pred CcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH---
Q 017492 162 LGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--- 237 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~--- 237 (370)
. ++. +.+ -.++ .++..+-|...|++....+|++-|+..+.+
T Consensus 244 g------------m~ergmg---------------------la~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~r 288 (471)
T KOG1799|consen 244 G------------MCERGMG---------------------LALG--QCPIVDCEVCGWINAKATIPMVSKMTPNITDKR 288 (471)
T ss_pred C------------Ccccccc---------------------ceec--cChhhhHHHhhhhhhccccccccccCCCccccc
Confidence 2 011 011 0111 245566778999999999999999876543
Q ss_pred -HHHHHHHcCccEEEEccC------------------------CccCCC-CccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 238 -DARIAVQAGAAGIIVSNH------------------------GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 238 -~a~~a~~aG~d~I~vs~~------------------------gg~~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.|+.+.+.|+.+|...|. ||++.. ..|-.+..+..|.+.+. ..|+.+.|||.+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt 367 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVET 367 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCccc
Confidence 467778889999887552 111111 11334455666666653 789999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
+.|.+.+|.+|++.|++++..+. +|.. .++.+-.||+..|.+.|.+++++++++.|.
T Consensus 368 ~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 368 GYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred ccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 99999999999999999998864 4554 457888999999999999999999988654
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-08 Score=106.24 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=76.0
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCC----CCcc-chHHHHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALE 271 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~----~~~~-~~~~~l~ 271 (370)
.|..++++.||+.+ +.||.+|+.. +.++ ++.+.++|+|.|.|+.. ++.. ..++ .......
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHH
Confidence 46788999999997 4899999863 2333 57788999999999642 2110 1111 1123445
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 272 ~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++++.+ ++||+++|+|++++++.++|+.| ||+|++||+++.
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 667766 79999999999999999999976 999999999985
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=98.64 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHhcC--CcEEEEec--------CCHHH----HHHHHHcCccEEEEcc--CCccCCC----Cccc-hHH
Q 017492 210 RSLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIM 268 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~--~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~--~gg~~~~----~~~~-~~~ 268 (370)
..+..+.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|.|.||. |..+... .... ...
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~ 266 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW 266 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence 4567889999999984 56777764 24444 5677889999999974 2222111 1111 233
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 269 ~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
...++++.+ ++||+++|+|++..++.++++.| +|+|++||+++.
T Consensus 267 ~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 267 ATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 456777776 89999999999999999999987 999999999985
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=104.27 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCccHHHHHHHHHhcC------CcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCC--CCccchHHH
Q 017492 210 RSLSWKDVKWLQTITK------LPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMA 269 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~------~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~ 269 (370)
..|..++++.+|+.++ .||.+|... +.++ ++.+.++|+|+|.|+.++.+.. .........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 3567889999999874 466666542 3333 5678899999999976432211 111123445
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+..+++.+..++||++.|||++++++.++++.|||+|++||+++.
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 556666554479999999999999999999999999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-09 Score=101.38 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEec--------CCHHH----HHHHHHcCccEEEEccCCccCCCCc---------cc
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------PA 265 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~---------~~ 265 (370)
...|..+.|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|.|.|+.....+.... +.
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 3457889999999998 489999985 35444 5677889999999964211111110 01
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 266 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 266 --~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.++...++++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.
T Consensus 278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 134556777777 89999999999999999999987 999999999984
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-08 Score=90.11 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.+.+.+.++...+.|++.|.+. .|.+ -|- - +.+..++ +....+......+
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfs------------DP~--a-------DGpvIq~----a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELG--VPFS------------DPL--A-------DGPTIQA----ADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEC--CCCC------------CCC--C-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888899999999999998874 3431 121 0 0000111 1111222111222
Q ss_pred ccHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc---------cC
Q 017492 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg---------~~ 259 (370)
..++.++++|+. .++|+++-+..++ +.++.+.++|+|+|.+-- +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 357789999977 6899886666665 347889999999998831 110 00
Q ss_pred -------------------CC--Cc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~~--~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.. +| +...+.+.++++.. +.||+++|||++++++.+++..|||+|.+|+++
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 11 12334566666654 679999999999999999999999999999999
Q ss_pred HHHHH
Q 017492 313 VYSLA 317 (370)
Q Consensus 313 l~~~~ 317 (370)
+.-+.
T Consensus 231 v~~~~ 235 (256)
T TIGR00262 231 VKIIE 235 (256)
T ss_pred HHHHH
Confidence 87553
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=100.79 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEecC----------------------CHHH----HHHHHHcCccEEEEccCCccCC
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQL 260 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v~----------------------~~~~----a~~a~~aG~d~I~vs~~gg~~~ 260 (370)
...|..++++.||+.+ +.||.+|... +.++ ++.+.++|+|.|.|+.....+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 3457889999999998 5799999752 2344 5677789999999964221111
Q ss_pred CC-------ccch-HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 261 DY-------VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 261 ~~-------~~~~-~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.. .... +.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 11 1111 34556677776 79999999999999999999987 999999999985
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-08 Score=88.66 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=119.6
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CC-ccccccccccccCccccccchhhHH
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
..+-+....+.+...++++.+.+.|+..+.||+++|..-.-.+.++..|.- |. .+...++.. ..........|...
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA~F 91 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGAQF 91 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCCCE
Confidence 345566677889999999999999999999999999866666777666531 21 122332211 00111111122222
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+ .|.++.+.+++.++ .++|++ -|+.|+.++..+.++|+|.|.++-.+ ......+..++..+ ..+|
T Consensus 92 iv----sP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip 157 (213)
T PRK06552 92 IV----SPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVN 157 (213)
T ss_pred EE----CCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCE
Confidence 33 34556666777554 588875 78999999999999999999995311 11234566665555 3699
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+++.|||. .+++.+++++||++|.+|+.++..
T Consensus 158 ~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 158 VMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 99999997 599999999999999999998643
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-07 Score=88.68 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=100.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.|.+. -|.+ -|- - +.+..++ +....+......+
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELG--IPYS------------DPL--A-------DGPIIQE----ASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCC--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888999999999999998874 3421 121 0 0001111 1112222212223
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc---------cC-
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg---------~~- 259 (370)
..++.++++|+..++|+++-+..++ +..+.+.++|+|++.+-. ||= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 3678899999878899877665443 347889999999999841 110 00
Q ss_pred ------------------C--CCcc-----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------------------L--DYVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------------------~--~~~~-----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
. -+|. . ..+.+..+++.. +.||.+.+||++++++.+....|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 0111 1 112344444443 8999999999999999999999999999999998
Q ss_pred HHHH
Q 017492 314 YSLA 317 (370)
Q Consensus 314 ~~~~ 317 (370)
.-+.
T Consensus 236 ~~i~ 239 (263)
T CHL00200 236 QILL 239 (263)
T ss_pred HHHH
Confidence 6543
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-08 Score=89.87 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+.+.++++.+..++|+++.|||.+++|+.+++.+||++|.+|++++.
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3456677766543478999999999999999999999999999999875
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=86.96 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=113.7
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
+=+....+.+...+.++.+.+.|++.+.+|.+.|..-...+.++..+.-+-.+...++... .........+....++
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~--~~~~~a~~aGA~fivs- 89 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSP--EQVDRLADAGGRLIVT- 89 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCH--HHHHHHHHcCCCEEEC-
Confidence 3445567888888999999999999999999988654455666666542222233222110 0000001111111222
Q ss_pred cCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 207 ~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
|.++.+.++..+ ..+.|++ -++.+++++..+.+.|+|+|.++-. .....+.+..+++.++.++|+++.
T Consensus 90 ---p~~~~~v~~~~~-~~~~~~~-~G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 90 ---PNTDPEVIRRAV-ALGMVVM-PGVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred ---CCCCHHHHHHHH-HCCCcEE-cccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEE
Confidence 233445555544 4577766 4489999999999999999998431 122356677776665336999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||| +.+++...+++||++|.+++.++.
T Consensus 158 GGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 158 GGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 999 779999999999999999999864
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=85.51 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.+.+.++++...+.|++.|.+. -|.+ -|- - +.+..+. +....+.......
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELG--VPYS------------DPL--A-------DGPVIQA----AATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCc--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888899999999999998874 3421 121 0 0001111 1112222212223
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc------------
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA------------ 257 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg------------ 257 (370)
-.++.++++|+..++|+++-+..++ +..+.+.++|+|++.+-. ||=
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 3678899999878899887665443 337888999999998831 110
Q ss_pred -c------------------CCCC---c-cchH-HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 258 -R------------------QLDY---V-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 258 -~------------------~~~~---~-~~~~-~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
| ...+ . +..+ +.+.++++. .++||++..||++++|+.+++..|||+|.+|++++
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 0001 1 1222 335666654 38999999999999999999999999999999998
Q ss_pred HHHH
Q 017492 314 YSLA 317 (370)
Q Consensus 314 ~~~~ 317 (370)
.-+.
T Consensus 223 k~i~ 226 (250)
T PLN02591 223 KALG 226 (250)
T ss_pred Hhhh
Confidence 7543
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=86.64 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=71.7
Q ss_pred CccHHHHHHHHHhcC-CcEEEEec-----------CCHHH-----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v-----------~~~~~-----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
.|..|+++.||+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.|+..... ...+-.......+
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~i 287 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHH
Confidence 367889999999984 35888863 23344 46677889999999852110 0111122334566
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++||++.|++ +++.+.++|+-| ||+|++||+++.
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 6666 7899999997 899999999998 999999999985
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-07 Score=83.25 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=98.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.|.+. .|.+ -|- - +.+..+. +....+......+
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~~AL~~G~~~~ 74 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELG--IPFS------------DPV--A-------DGPVIQA----ASLRALAAGVTLA 74 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCc--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 4567888899999999999998874 3431 121 0 0000111 1111222111222
Q ss_pred ccHHHHHHHH-HhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C-
Q 017492 212 LSWKDVKWLQ-TITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (370)
Q Consensus 212 ~~~~~i~~ir-~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~- 259 (370)
-.++.++++| +..++|+++-+..++ +..+.+.++|+|++.+-. ||=. .
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3567889998 446889876665432 347888899999998831 1100 0
Q ss_pred -------------------C--CCc-----cc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------L--DYV-----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~--~~~-----~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
. -+| +. ..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|+++
T Consensus 155 ~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 155 DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 0 011 11 234667777654 7999999999999999998875 9999999999
Q ss_pred HHHHH
Q 017492 313 VYSLA 317 (370)
Q Consensus 313 l~~~~ 317 (370)
+..+.
T Consensus 232 v~~~~ 236 (258)
T PRK13111 232 VKIIE 236 (258)
T ss_pred HHHHH
Confidence 87654
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-07 Score=85.55 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CC-----------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QL----------- 260 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~----------- 260 (370)
..++.++++++.+++|+++.+ +.++++++.+.+.|+|.|++... |. + .+
T Consensus 60 ~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 60 VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECC
Confidence 468889999999999999976 58899999999999999987521 11 0 00
Q ss_pred -------------------------------C--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 261 -------------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 261 -------------------------------~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
+ ...+.++.+.++++.. ++||++.|||++.+|+.+++..||++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 0 0113456677777665 7999999999999999999999999999
Q ss_pred EcHHHHHH
Q 017492 308 IGRPVVYS 315 (370)
Q Consensus 308 igr~~l~~ 315 (370)
+||.++.+
T Consensus 218 vg~~~~~~ 225 (234)
T cd04732 218 VGKALYEG 225 (234)
T ss_pred EeHHHHcC
Confidence 99999763
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=87.53 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC-----------------------C-------Cc
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YV 263 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~-----------------------~-------~~ 263 (370)
.+.+..+|+.++.|++ -.+.+.++|.++.+.|+|.|-...+|++.- + ..
T Consensus 101 ~~~~~~iK~~~~~l~M-AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFV-CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEE-ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4567888888877764 778999999999999999998876665532 0 12
Q ss_pred cchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.|.++++.. ++||+ +.|||.+++++.+++.+||++|++|++++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35678888888876 79997 999999999999999999999999999874
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-07 Score=86.00 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.++...++.+.++..+++++.|||.+++|+.+++.+|||+|.+|++++.
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3555666666554457999999999999999999999999999999875
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=81.05 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.+++.+++|++.+-+.+ |.. -|. - +.+..+ +.....+........
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv--~-------DG~~I~----~a~~~al~~g~~~~~ 63 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS------------DPV--A-------DGPVIQ----AASERALANGVTLKD 63 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCC--C-------CCHHHH----HHHHHHHHcCCCHHH
Confidence 3567788899999999999987754 532 110 0 000000 001111221112234
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCc---------cC--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg---------~~-- 259 (370)
.++.++++|+..++|+++-.-.+ .+.++.+.++|+|+|++-. +|- +.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 67889999988889977643334 3347888999999999821 110 00
Q ss_pred ---------C-----------CCc-----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 ---------L-----------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 ---------~-----------~~~-----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
. .++ ....+.+.++++.. ++||+++|||++.+++.++... ||+|.+|++++.
T Consensus 144 ~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 144 RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 011 11234566666543 8999999999999999999889 999999999987
Q ss_pred HHH
Q 017492 315 SLA 317 (370)
Q Consensus 315 ~~~ 317 (370)
-+.
T Consensus 221 ~~~ 223 (242)
T cd04724 221 IIE 223 (242)
T ss_pred HHH
Confidence 553
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-06 Score=75.55 Aligned_cols=176 Identities=19% Similarity=0.184 Sum_probs=113.7
Q ss_pred cccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc---cCCCceEEEE----eecCChH--HHHHHHHHHHHcCCc
Q 017492 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS---TGPGIRFFQL----YVYKDRN--VVAQLVRRAERAGFK 151 (370)
Q Consensus 81 ~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~---~~~~~~~~Ql----y~~~d~~--~~~~~l~ra~~~G~~ 151 (370)
+..|..++.-.++|+||.+.|....=.+ ++++|.+ ... ..++-| |.+.+.- -+.+.++...++|++
T Consensus 26 ~~pl~~~~iv~~mA~Aa~~gGAvgiR~~----gv~dIkai~~~v~-vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~ 100 (229)
T COG3010 26 GEPLDSPEIVAAMALAAEQGGAVGIRIE----GVEDIKAIRAVVD-VPIIGIIKRDYPDSPVRITPTLKEVDALAEAGAD 100 (229)
T ss_pred CCCCcchhHHHHHHHHHHhCCcceEeec----chhhHHHHHhhCC-CCeEEEEecCCCCCCceecccHHHHHHHHHCCCc
Confidence 3334445455689999999988754433 3444443 221 112222 2222221 235566677788988
Q ss_pred EEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH-HHHHHHHhcCCcEEE
Q 017492 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-DVKWLQTITKLPILV 230 (370)
Q Consensus 152 ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~i~~ir~~~~~Pv~v 230 (370)
.|.+ |+.- |+| | +. +.+ .++. .+...-+.+
T Consensus 101 IIA~--DaT~---R~R--------P--------------------------------~~--~~~~~i~~--~k~~~~l~M 131 (229)
T COG3010 101 IIAF--DATD---RPR--------P--------------------------------DG--DLEELIAR--IKYPGQLAM 131 (229)
T ss_pred EEEe--eccc---CCC--------C--------------------------------cc--hHHHHHHH--hhcCCcEEE
Confidence 7765 4321 110 1 11 222 3444 233556777
Q ss_pred EecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 231 KGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 231 K~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
--+++.|++..|.++|+|.|-..-+|.+. .....+.+..+.++.+. .++||+.|.+.+++++.+++.+||++|.+
T Consensus 132 AD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~---~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 132 ADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDA---GCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred eccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhC---CCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 88999999999999999998655455443 22345677888888773 89999999999999999999999999999
Q ss_pred cHHHH
Q 017492 309 GRPVV 313 (370)
Q Consensus 309 gr~~l 313 (370)
|+++-
T Consensus 209 GsAIT 213 (229)
T COG3010 209 GSAIT 213 (229)
T ss_pred CcccC
Confidence 99763
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-06 Score=78.94 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++.+.+.|+++|.+. .|.+ -|. .+.+..+. +....+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELG--vPfS------------DPv---------ADGP~Iq~----A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELG--VPFS------------DPV---------ADGPTIQA----AHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEec--CCCC------------CcC---------ccCHHHHH----HHHHHHHCCCCHH
Confidence 3467888899999999999999874 3432 121 00001111 1112222212223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C-
Q 017492 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~- 259 (370)
..++.++++|+. .++|+++-+..++ +..+.+.++|+|++.+-. ||=. .
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 467889999966 6899998886554 337889999999999831 1100 0
Q ss_pred -------------------C--CCc-c-c----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------L--DYV-P-A----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~--~~~-~-~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
. -+| . + ..+.+..+++.. ++||++--||++++++.+.... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 0 011 1 1 223455555554 8999999999999999999999 9999999999
Q ss_pred HHHHHh
Q 017492 313 VYSLAA 318 (370)
Q Consensus 313 l~~~~~ 318 (370)
+..+..
T Consensus 237 V~~i~~ 242 (265)
T COG0159 237 VKIIEE 242 (265)
T ss_pred HHHHHh
Confidence 986654
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-07 Score=80.82 Aligned_cols=169 Identities=19% Similarity=0.191 Sum_probs=103.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-++...+.+...+.++.+.+.|++.+.+++..+..-.-.+.++..+ |. .+...++.. ..........+....+
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~--~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLT--PEQADAAIAAGAQFIV 81 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCC--HHHHHHHHHcCCCEEE
Confidence 344555667788888888888889999999887664222223343333 21 111111100 0000000000111111
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
. +..+.+.++. ++..+.|+++ ++.|++++..+.++|+|+|.++.. .+...+.+..+.+.. ..+|++
T Consensus 82 ~----p~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~-~~~p~~ 147 (190)
T cd00452 82 S----PGLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPF-PQVRFM 147 (190)
T ss_pred c----CCCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhC-CCCeEE
Confidence 1 1223333444 4456788765 678999999999999999998531 122345566665544 259999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.||| +.+++.+++..||++|.+++.+.
T Consensus 148 a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 148 PTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 99999 99999999999999999999876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-07 Score=80.33 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=116.1
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..| |. .+...++... ...+.....+....+
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl~~--~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVLNP--EQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCCCEEE
Confidence 445556778888889999999999999999999987655556666555 32 1223332110 011111112222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.++..++ .++|++ -|++|+.++..|.++|+|.|.++-.+ .-+|+. .++.++.-+ .++|++
T Consensus 86 ----sP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~---yikal~~pl-p~i~~~ 152 (204)
T TIGR01182 86 ----SPGLTPELAKHAQD-HGIPII-PGVATPSEIMLALELGITALKLFPAE---VSGGVK---MLKALAGPF-PQVRFC 152 (204)
T ss_pred ----CCCCCHHHHHHHHH-cCCcEE-CCCCCHHHHHHHHHCCCCEEEECCch---hcCCHH---HHHHHhccC-CCCcEE
Confidence 24456666776554 588876 58999999999999999999996421 001233 444444444 479999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+|||.- +++..++.+||.+|++|+.++.
T Consensus 153 ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 153 PTGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred ecCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 9999976 8999999999999999998864
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=85.59 Aligned_cols=102 Identities=26% Similarity=0.316 Sum_probs=75.7
Q ss_pred CccHHHHHHHHHhcC--CcEEEEecC---------CHHH----HHHHHHcC-ccEEEEccCCcc---CCCCccch--HHH
Q 017492 211 SLSWKDVKWLQTITK--LPILVKGVL---------TAED----ARIAVQAG-AAGIIVSNHGAR---QLDYVPAT--IMA 269 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~--~Pv~vK~v~---------~~~~----a~~a~~aG-~d~I~vs~~gg~---~~~~~~~~--~~~ 269 (370)
.|..|.++.+|+.++ .||.+++.. +.++ ++.+.+.| +|.|.++..+.. ......+. ...
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 467889999999994 589999862 2233 67788999 799999863321 11111111 123
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
...++... ++|+|++|+|++++.+.++|+-| ||.|.+||+|+.
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 44455555 69999999999999999999998 999999999985
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.7e-06 Score=75.96 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 216 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.++.+++. ++..++-.- .+.+..+...+..-..+.++-.+|+.........+.+.++++.. .+.||+++|||++.+
T Consensus 121 ~~~~~~~~-Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~e 198 (244)
T PRK13125 121 YVEIIKNK-GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSPE 198 (244)
T ss_pred HHHHHHHc-CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCHH
Confidence 44555543 554444332 34677777777765555555334432222222334666666654 257899999999999
Q ss_pred HHHHHHHhCCCEEEEcHHHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~~~ 316 (370)
++.+++..|||++.+|+.++.-+
T Consensus 199 ~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 199 DARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHcCCCEEEECHHHHHHH
Confidence 99998999999999999988644
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=85.04 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC---------------------C----------C
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 262 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~---------------------~----------~ 262 (370)
.+.+..+++.++.|++ -++.+.++|.++.+.|+|.|-..+.||+.- . .
T Consensus 103 de~~~~~K~~f~vpfm-ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFV-CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 4567778888888875 678999999999999999998877666531 0 0
Q ss_pred ccchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 263 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
-.++++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 135677888888765 79998 999999999999999999999999999864
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=80.71 Aligned_cols=172 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcC--CCC-ccccccccccccCccccccchhhHH
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPP-FLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~--~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
.+=+....+.+...+.++.+.+.|++.+.||+++|..-...+.++..|. .|. .++..++... ...+.....++..
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~--e~a~~a~~aGA~F 94 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDA--ATAALYIQLGANF 94 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCH--HHHHHHHHcCCCE
Confidence 4445567788999999999999999999999999986655666654432 232 1222222110 0011111122222
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+ .|.++.+.++..++ .++|++ -|++|+.++..+.++|++.|.++-.+ ..|+ ..+..+..-+ ..++
T Consensus 95 iV----sP~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~ 160 (222)
T PRK07114 95 IV----TPLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTK 160 (222)
T ss_pred EE----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCe
Confidence 23 24556667777665 588875 88999999999999999999996421 1223 3444444444 3799
Q ss_pred EEEecCCCC-HHHHHHHHHhCCCEEEEcHHHH
Q 017492 283 VFLDGGVRR-GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 283 vi~~GGI~~-~~dv~kalalGAd~V~igr~~l 313 (370)
++.+|||.- .+++..++.+|+.+|++|+.++
T Consensus 161 ~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 161 IMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 999999985 5899999999999999999875
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=88.77 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=72.3
Q ss_pred CCCccHHHHHHHHHhcC--CcEEEEecC----------CHHHH----HHHHHcCccEEEEccCCc----cCCCC--ccch
Q 017492 209 DRSLSWKDVKWLQTITK--LPILVKGVL----------TAEDA----RIAVQAGAAGIIVSNHGA----RQLDY--VPAT 266 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~--~Pv~vK~v~----------~~~~a----~~a~~aG~d~I~vs~~gg----~~~~~--~~~~ 266 (370)
...|..+.++.||+.++ .||.+|+.. +.+++ +.+.+ .+|.+.++...- ..... ....
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence 34568899999999984 677777641 24432 33443 489999874210 00000 1112
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++...++++.+ ++||+++|||++++++.++|..| ||+|++||+++.
T Consensus 278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 45566777776 79999999999999999999987 999999999984
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-07 Score=82.00 Aligned_cols=94 Identities=22% Similarity=0.201 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..+.++.+++.+ .|+.+|.+ ++.++ .+.+.++|+|+|..|..- ..+..+.+.+..+++..+++++|
T Consensus 108 v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~I 182 (221)
T PRK00507 108 VEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGV 182 (221)
T ss_pred HHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceE
Confidence 455677887765 47788985 44443 456889999998886532 12346777788787877778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.++|||++.+|+.+.+.+||+.++..+.
T Consensus 183 KasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 183 KASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred EeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 9999999999999999999999887764
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.4e-07 Score=80.42 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
+.+...++|+.+++.++-++.+|.+ ++.++ .+.+.++|+|+|..|.... .+..+.+.+.-+++.+++
T Consensus 107 ~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~ 182 (228)
T COG0274 107 NWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGG 182 (228)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhcc
Confidence 3344566899999998766778876 34333 4567899999999986322 445677777777777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++.|-++||||+.+|+.+.+.+||.-++..+
T Consensus 183 ~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 183 RVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 8999999999999999999999977665554
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=79.05 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.+.++.+.+.|++.+.+..-..-+... .+.++.+.++.+.. ++||++.|||++.+|+.+++.+||++|++|++++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 355788999999998874321111112 35688888888875 799999999999999999999999999999999863
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=77.24 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=69.4
Q ss_pred HHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC-C-CccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-D-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~-~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+.. . ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34555544 344554 46788999999999999997753222211 1 1233567778777765 7999999999 899
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++.+||++|.+|+.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999875
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=81.37 Aligned_cols=100 Identities=24% Similarity=0.418 Sum_probs=79.0
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CC------------
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QL------------ 260 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~------------ 260 (370)
.++.++++++.+++|+++- ++.+.++++.+.++|+|.|+++.. |. + .+
T Consensus 64 ~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 64 NAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred cHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 5778999999999999995 468899999999999999988631 10 0 00
Q ss_pred ------------------------------C--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 261 ------------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 261 ------------------------------~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+ ...+.++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 0122456677777766 79999999999999999998899999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 222 gsa~~~ 227 (241)
T PRK13585 222 GSALYK 227 (241)
T ss_pred EHHHhc
Confidence 999875
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=82.17 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------------------C-----C-------Cc
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------L-----D-------YV 263 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------------------~-----~-------~~ 263 (370)
.+.+..+++.++.|++ -++.+.++|.++.+.|+|.|-..+.-|+. + + .-
T Consensus 110 d~~~~~~K~~f~~~fm-ad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPFV-CGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 4567888888888875 67899999999999999999876433321 0 0 12
Q ss_pred cchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.|.++++.. ++||+ +.|||.+++|+.+++.+||++|++|+.++.
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 35678888888865 79998 999999999999999999999999999864
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.8e-06 Score=76.65 Aligned_cols=159 Identities=20% Similarity=0.290 Sum_probs=98.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.+.|.+ |.. -|- .+.+..++ +....+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfS------------DP~---------ADGpvIq~----A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFS------------DPV---------ADGPVIQK----ASQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SS------------SCT---------TSSHHHHH----HHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCC---------CCCHHHHH----HHHHHHHCCCCHH
Confidence 45678999999999999999988753 321 121 00000111 1111222212223
Q ss_pred ccHHHHHHHH-HhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc----------
Q 017492 212 LSWKDVKWLQ-TITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR---------- 258 (370)
Q Consensus 212 ~~~~~i~~ir-~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~---------- 258 (370)
..++.++++| +..++|+++-+..++ +.++.+.++|+|++++-. ||=.
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3567899999 667999998876432 347888999999999832 1100
Q ss_pred ---------------------CCCCcc----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 259 ---------------------QLDYVP----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 259 ---------------------~~~~~~----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
...+.. . ..+.+..+++.. ++||++.-||++++|+.+.. .|||+|.+||++
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 000111 1 123456666554 89999999999999997766 999999999999
Q ss_pred HHHHHhcC
Q 017492 313 VYSLAAEG 320 (370)
Q Consensus 313 l~~~~~~G 320 (370)
+.-+...+
T Consensus 230 v~~i~~~~ 237 (259)
T PF00290_consen 230 VKIIEENG 237 (259)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 98765433
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=80.75 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+.++.+.+.|+|.|.+++...... .....++.+.++.+.. ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4567889999999999965211001 1223677788887766 8999999999999999999997 9999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 3
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-06 Score=73.67 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... ...+.....+....+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~~--e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILNA--KQFEDAAKAGSRFIV 81 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcCH--HHHHHHHHcCCCEEE
Confidence 344555678888889999999999999999999987544445555555 32 1222222110 011111112222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.+++.++ .++|++ -|++|+.++..+.++|++.|.++-.+ .-+|+ ..+..++.-+ .++|++
T Consensus 82 ----SP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~---~yikal~~pl-p~~~l~ 148 (201)
T PRK06015 82 ----SPGTTQELLAAAND-SDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGA---AFLKALSSPL-AGTFFC 148 (201)
T ss_pred ----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCH---HHHHHHHhhC-CCCcEE
Confidence 34566777777654 588875 88999999999999999999996321 00123 3445554545 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+|||.. +++..++.+|+.+++.|+.+.
T Consensus 149 ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 149 PTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred ecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 9999976 899999999988777777664
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-07 Score=83.13 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---GAd~V~igr~~ 312 (370)
.+.++.+.+.|++.|++.+...-+...|+ .++.+.++.+.. ++||+++|||++.+|+.+++.+ ||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35578899999999999543222223444 889999998876 8999999999999999988654 99999999999
Q ss_pred HHH
Q 017492 313 VYS 315 (370)
Q Consensus 313 l~~ 315 (370)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 864
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=79.82 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..++..++++.++|++.|-.-+ -| +. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-sg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-SG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 5689999999999999995411 12 11 3455677888887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8864
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=76.52 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=88.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc------------------------------------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN------------------------------------ 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~------------------------------------ 254 (370)
...+.++++.+.+.+|+.|.| +.+.+|+++++.+|||-|.+-.
T Consensus 61 ~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~ 140 (256)
T COG0107 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENG 140 (256)
T ss_pred hHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCC
Confidence 356778888888999999976 6899999999999999998820
Q ss_pred ------CCccC---C------------------------CCcc--chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 017492 255 ------HGARQ---L------------------------DYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (370)
Q Consensus 255 ------~gg~~---~------------------------~~~~--~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal 299 (370)
|||+. + |+.. -.++.+..+++.+ ++|||+|||..+.+|..+++
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf 218 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAF 218 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHH
Confidence 23321 1 1111 1445677777777 89999999999999999999
Q ss_pred HhC-CCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC
Q 017492 300 ALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 300 alG-Ad~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 344 (370)
..| ||++..++-|.|+ . .-..|++..|...|.
T Consensus 219 ~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 219 TEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred HhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 988 9999999888774 2 224566666666664
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=79.76 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.+ .+||++.|||++.+|+.+++..| |++|++||+++.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 3557888899999887753211111233 5788999998876 69999999999999999999998 999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=74.73 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=99.2
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc-cccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+-++...+..-......+..+ |.. .....+.- ....+.....+....+
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gtvl~--~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGTILT--LEDLEEAIAAGAQFCF 89 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEEEEc--HHHHHHHHHcCCCEEE
Confidence 444555666777777777777777777777766554322222222211 110 00000000 0000000000000011
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
. |.+..+ +...++..+.+.++. +.+++++..+.+.|+|+|.++-. ......+.+..++..+ .++|++
T Consensus 90 ~----p~~~~~-~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~-~~ipvv 156 (187)
T PRK07455 90 T----PHVDPE-LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPL-GHIPLI 156 (187)
T ss_pred C----CCCCHH-HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhC-CCCcEE
Confidence 1 122333 344455567777655 89999999999999999998321 1122356677777665 369999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.||| +.+++...++.||++|.+++.++
T Consensus 157 aiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 157 PTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred EeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 99999 66999999999999999999865
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=79.45 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..++..++++.++|++.|-.-+ -| +. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4689999999999999995411 12 11 2455567788777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8864
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=81.52 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=62.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH-HhCCCEEEEcHHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 315 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal-alGAd~V~igr~~l~~ 315 (370)
+.++.+.+.|++.|.+.+-..-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557888899999999854221112233 4888899998876 89999999999999999999 7999999999999883
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-06 Score=78.90 Aligned_cols=101 Identities=27% Similarity=0.329 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc---------------CCcc---CC------------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------------HGAR---QL------------ 260 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~---------------~gg~---~~------------ 260 (370)
...+.|+++.+.+++||.+.+ +.+.++++.+.++|++.++++. +|.+ .+
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 367789999998899999975 6899999999999999999853 1111 00
Q ss_pred ------------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 261 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 261 ------------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++ ..+.++.+.++.+.. ++||+++|||++.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 112455666666654 79999999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 221 G~a~~~ 226 (234)
T PRK13587 221 GKAAHQ 226 (234)
T ss_pred hHHHHh
Confidence 999875
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-06 Score=75.90 Aligned_cols=94 Identities=26% Similarity=0.292 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
...++++++++.++ .+.+|.+ ++.++ .+.+.++|+|+|..|..-+ .+..+...+..+++.++++++
T Consensus 103 ~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~ 177 (211)
T TIGR00126 103 VVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIG 177 (211)
T ss_pred HHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCe
Confidence 35667888888774 3334544 34333 5678899999999985311 233566666666666666899
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|-++|||++.+|+++.+.+||+-++..+
T Consensus 178 IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 178 VKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 9999999999999999999999876643
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=82.50 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=75.1
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecCC--------HHH----HHHHHHcCccEEEEccCCccC-------CCC-cc--ch
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVLT--------AED----ARIAVQAGAAGIIVSNHGARQ-------LDY-VP--AT 266 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~~--------~~~----a~~a~~aG~d~I~vs~~gg~~-------~~~-~~--~~ 266 (370)
.|..+.|+.||+.+ +.||.+|.... .++ ++.+.++|+|.+.++...... ... .. ..
T Consensus 200 Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (341)
T PF00724_consen 200 RFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYN 279 (341)
T ss_dssp HHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchh
Confidence 35788999999998 58899998621 122 577888999998776422110 011 11 12
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
......+++.+ ++|||++|||++++.+.++++.| ||+|.+||+++.
T Consensus 280 ~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 280 LDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 34556666766 89999999999999999999988 999999999985
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=93.55 Aligned_cols=142 Identities=27% Similarity=0.260 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHhc-----CCcEEEEecCCHH---HHHHHHHcCccEEEEccC-CccC---C---CCccchHHH-HHHHHH
Q 017492 212 LSWKDVKWLQTIT-----KLPILVKGVLTAE---DARIAVQAGAAGIIVSNH-GARQ---L---DYVPATIMA-LEEVVK 275 (370)
Q Consensus 212 ~~~~~i~~ir~~~-----~~Pv~vK~v~~~~---~a~~a~~aG~d~I~vs~~-gg~~---~---~~~~~~~~~-l~~i~~ 275 (370)
+++|+++++.-.. .-.|.||++...- -|.-..++.||.|.||+| ||+. + ....-+|+. |.+-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4778777665433 3568999875321 245567788999999999 5542 1 122223432 444444
Q ss_pred H-----ccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc--------------------------C-HHH
Q 017492 276 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKG 323 (370)
Q Consensus 276 ~-----~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~--------------------------G-~~~ 323 (370)
. ++.++-+-.||++++|.||+-|-.+||+-.++++.-|.++.|. | ++.
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 3 3458889999999999999999999999999999877776651 2 456
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 324 VRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 324 v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
|.+++-.+.+|+|.+|..+|+++++|+-+.
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 888999999999999999999999998754
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-06 Score=76.88 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH-HHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k-alalGAd~V~igr~~l 313 (370)
.+.++.+.++|+|.|.+++....+...+ +.++.+.++++.+ ++||+++|||++.+|+.+ ....||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4667889999999999976322111122 4678888888876 799999999999999999 5558999999999984
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=75.81 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=110.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
...+.+....+++...+.|+++|.||+.+|....-.+.+++.+. ---+...++.. ..........|.+..+ .|
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~--~~q~~~a~~aGa~fiV----sP 92 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLN--PEQARQAIAAGAQFIV----SP 92 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccC--HHHHHHHHHcCCCEEE----CC
Confidence 35678888899999999999999999999998877777777663 11122222211 0001111122222233 24
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.++.+.++... ..++|++ -|+.|+-++..+.++|++.+.++-... .+|+ ..+..+.--. .+++++..|||.
T Consensus 93 ~~~~ev~~~a~-~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~gP~-~~v~~~pTGGVs 163 (211)
T COG0800 93 GLNPEVAKAAN-RYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALAGPF-PQVRFCPTGGVS 163 (211)
T ss_pred CCCHHHHHHHH-hCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHcCCC-CCCeEeecCCCC
Confidence 45556555544 4588885 889999999999999999999964211 0122 2222222111 379999999997
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
. .++..++++|+.+|++|+-+..
T Consensus 164 ~-~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 L-DNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred H-HHHHHHHhCCceEEecCccccC
Confidence 6 6999999999999999987763
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.3e-06 Score=76.31 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=106.3
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... .........++...+
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~~--e~a~~a~~aGA~Fiv- 85 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLTA--EQAEAAIAAGAQFIV- 85 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--SH--HHHHHHHHHT-SEEE-
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccCH--HHHHHHHHcCCCEEE-
Confidence 33445677888888898899999999999999986544445555555 32 1222222110 000111112222222
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.|.++.+.+++.++ .++|++ -|++|+.++..|.++|++.+.++-.+- -+|+ ..++.++.-+ .+++++.
T Consensus 86 ---SP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~---~~ik~l~~p~-p~~~~~p 153 (196)
T PF01081_consen 86 ---SPGFDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGP---SYIKALRGPF-PDLPFMP 153 (196)
T ss_dssp ---ESS--HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHH---HHHHHHHTTT-TT-EEEE
T ss_pred ---CCCCCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcH---HHHHHHhccC-CCCeEEE
Confidence 24566677777665 488875 789999999999999999999964211 0123 3455554444 3799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+|||.- +++..++.+|+.+|++|+.+..
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 999986 8999999999999999998764
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=72.92 Aligned_cols=91 Identities=29% Similarity=0.354 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHhcC-CcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 212 LSWKDVKWLQTITK-LPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
..++.+.++++.++ .|+ |.+ ++.+. ++.+.++|+|.|..+. |.. ...++...+..+.+.++.++
T Consensus 102 ~~~~ei~~v~~~~~g~~l--kvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v 175 (203)
T cd00959 102 AVYEEIAAVVEACGGAPL--KVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRV 175 (203)
T ss_pred HHHHHHHHHHHhcCCCeE--EEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCc
Confidence 35667888888774 454 433 44333 5778999999999973 211 22345555555555554589
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
||.++|||++.+++++.+.+||+-++.
T Consensus 176 ~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 176 GVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred eEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 999999999999999999999987653
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=69.90 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.+.......++|+|.+... |++.....+..++.+.++++..+ ..+||+++|||+ .+++.+++..|||.+.+||+
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsa 195 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSA 195 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChH
Confidence 3333344456787765332 22211222334455555555442 237999999996 69999999999999999999
Q ss_pred HH
Q 017492 312 VV 313 (370)
Q Consensus 312 ~l 313 (370)
++
T Consensus 196 i~ 197 (210)
T TIGR01163 196 IF 197 (210)
T ss_pred Hh
Confidence 86
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=75.43 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+-+.++++.+.++|++.|-|-|.. +.+-...+....++...++.++.+++.+||.+.+|+.+....|+|+|.||+.+
T Consensus 165 Vh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~l 241 (254)
T PF00218_consen 165 VHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEAL 241 (254)
T ss_dssp ESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHH
T ss_pred ECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 345555555555555555554432 22222233444455555556788999999999999999888999999999999
Q ss_pred HHH
Q 017492 313 VYS 315 (370)
Q Consensus 313 l~~ 315 (370)
|.+
T Consensus 242 m~~ 244 (254)
T PF00218_consen 242 MRS 244 (254)
T ss_dssp HTS
T ss_pred hCC
Confidence 863
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-06 Score=77.78 Aligned_cols=100 Identities=27% Similarity=0.417 Sum_probs=76.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc----------------------------CC-------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN----------------------------HG------- 256 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~----------------------------~g------- 256 (370)
.++.|+++.+.+.+|+.+.+ +.+.++++.+.++|++.++++. +|
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 56789999999999999976 6899999999999999999952 11
Q ss_pred ccC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 257 ARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 257 g~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
+.. .++ ..+.++.+.++++.. ++|++++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 000 011 124567777887776 8999999999999999999999999999
Q ss_pred EcHHHHH
Q 017492 308 IGRPVVY 314 (370)
Q Consensus 308 igr~~l~ 314 (370)
+|++|+.
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999965
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.6e-05 Score=65.95 Aligned_cols=172 Identities=22% Similarity=0.114 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC---CceEEEEeecC---ChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~---~~~~~Qly~~~---d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
.-..+++.+.+.|+...+-.. ..++.+.+..+ -+.+.++-.+. ..+...+.++++++.|++++.+.. |..
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~~ 89 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NIG 89 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cHH
Confidence 345788888888887655333 22344433322 23455554322 146677888999999999998752 210
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEecC----CH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL----TA 236 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v~----~~ 236 (370)
+. | ..+.+...+.++.+++.+ ++|++++... ++
T Consensus 90 ----------~~-~------------------------------~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 90 ----------SL-K------------------------------EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred ----------HH-h------------------------------CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 00 0 001122456677787774 8999999862 44
Q ss_pred HHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.. +.+.+.|+++|..+.... .+...+..+.++.+..+.++||++.||+.+.+++..++.+||+++.+|
T Consensus 129 ~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 129 DEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 443 345689999999864211 122355667777766544689999999999999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=74.26 Aligned_cols=101 Identities=29% Similarity=0.377 Sum_probs=77.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--------------CCc-c---CCC---C--------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGA-R---QLD---Y-------- 262 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--------------~gg-~---~~~---~-------- 262 (370)
..+.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.++++. .|. + .+| +
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 57788999988889999876 5789999999999999998853 121 1 011 0
Q ss_pred ----------------------------ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 263 ----------------------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 263 ----------------------------~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+..+.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012234445555443 79999999999999999999999999999999876
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=73.67 Aligned_cols=101 Identities=28% Similarity=0.448 Sum_probs=82.0
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc---------------CCccC-----------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------------HGARQ----------------- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~---------------~gg~~----------------- 259 (370)
..+.++++.+.+++||-+.| +.+.++++.+.++|++.++++. +|++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 56789999999999999876 6889999999999999999863 22210
Q ss_pred ----------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEE
Q 017492 260 ----------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 308 (370)
Q Consensus 260 ----------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~i 308 (370)
.|+ .-+.++.+.++.+++ ++||+++|||++-+|+..+..+ |..+|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 011 234667888888887 8999999999999999888888 9999999
Q ss_pred cHHHHHH
Q 017492 309 GRPVVYS 315 (370)
Q Consensus 309 gr~~l~~ 315 (370)
||+++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999853
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=76.14 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.++.......+ ..++.+.++.+.. ++||+++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3557889999999999866432111122 3678888888876 7999999999999999999974 9999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.7e-05 Score=70.11 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
....++...++.+..+++.|||.+++|+.+.... ||+|.+|+.+|.+
T Consensus 190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 4445555666667788999999999999887665 9999999999863
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-05 Score=69.45 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=109.5
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHH
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
..+-+....+.+...+.++.+.+.|++.+.||++.|..-.-.+.++..| |. .+...++.. ....+.....|+...
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~--~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLN--PEQLAQAIEAGAQFI 91 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccC--HHHHHHHHHcCCCEE
Confidence 3455666788899899999999999999999999986444446666655 32 122222110 000011111122222
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+ .|.++.+.++..++ .++|++ -+++|+.++..+.++|++.|.++-.+ .. + ....+..++..+ ..+++
T Consensus 92 v----sP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~-p~~~~ 158 (212)
T PRK05718 92 V----SPGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPF-PDVRF 158 (212)
T ss_pred E----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccC-CCCeE
Confidence 2 24456666776654 678874 77899999999999999999995311 00 1 233455554544 36999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+|||.- +++.+++.+|+..++.|+.++
T Consensus 159 ~ptGGV~~-~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 159 CPTGGISP-ANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred EEeCCCCH-HHHHHHHhCCCEEEEEChHhC
Confidence 99999966 899999999965555555443
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=73.56 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+..+.+.+. +.-|+-=...++..++++.++||..|---+.. |+ ..|..+.+.|..+.+.. ++|||+|+||.+
T Consensus 112 tl~Aae~Lv~e-GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~ 186 (247)
T PF05690_consen 112 TLKAAEILVKE-GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGT 186 (247)
T ss_dssp HHHHHHHHHHT-T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---S
T ss_pred HHHHHHHHHHC-CCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCC
Confidence 34444555443 44444344567888999999999999764321 11 13455678888888877 899999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+.+++++|||+|.+-+++.
T Consensus 187 pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 187 PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp HHHHHHHHHTT-SEEEESHHHH
T ss_pred HHHHHHHHHcCCceeehhhHHh
Confidence 9999999999999999999874
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.5e-06 Score=80.19 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEEccCCccCCC-CccchHHHHHHHHHHccCCCcE
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipv 283 (370)
++++..+.++++++.. |.+|...+ .+.++.+.++|+|.|.+++.--.|.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4445556788888753 77787643 35678999999999999542211222 2223456677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|+ |++.+.+++.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-05 Score=69.79 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHcCccEEEEccCC--ccCCC-CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+.+++..+.+.|+|+|.++.-. ++... ..+..++.+.++++.. .++||++.||| +.+++.+++.+||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 357889999999999999986421 11111 1122377888887766 24999999999 6899999999999999999
Q ss_pred HHHHH
Q 017492 310 RPVVY 314 (370)
Q Consensus 310 r~~l~ 314 (370)
+.++.
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 98753
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.2e-05 Score=67.97 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEec--C-CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGV--L-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~-~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++++++ .++++++-.. . ..++++.+.+.|+|.|.+.. |......++..+..+.++++.+. ..++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 5888887643 2 24788889999999998842 21111233445566777766653 4677789999 77
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~ 314 (370)
+++.+++..||+.+.+||+++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8999999999999999999753
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=75.44 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+.++.+.++|+|.|.+++.. +......+.++.+.++++.. ++||+++|||++.+|+.+++..| |++|++|+++..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~-~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMD-KDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcC-cccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 355788999999999995421 11112345677888888876 79999999999999999999988 999999999875
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00034 Score=64.54 Aligned_cols=137 Identities=23% Similarity=0.258 Sum_probs=90.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++++++|++.+ |+|. + .|. ++ .+-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~Dv--m--------DG~-----------------------------Fv---pn~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDV--M--------DNH-----------------------------YV---PNLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec--c--------cCc-----------------------------cc---Cccc
Confidence 3566777889999999998875 4441 0 000 01 1223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Cc---------cC-----
Q 017492 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg---------~~----- 259 (370)
|..+.++++|+. ++.|+=+=+ +.+++. .....++|+|.|.+.-. |- +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 566788888887 577866654 345554 67778889998888421 10 00
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++.+.++++... .++||.++|||. .+++.+....|||.+.+||+++
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 01 12 224455666665542 148999999998 7899999999999999999865
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00018 Score=65.00 Aligned_cols=71 Identities=31% Similarity=0.355 Sum_probs=52.3
Q ss_pred HHHHHHHcCccEEEEccCCccCC-----------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 238 DARIAVQAGAAGIIVSNHGARQL-----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~-----------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
-|..+.++|+|.|.. .||+.- ....|++....+|.+++ ++||+...|++. ..+--|+++||.+|
T Consensus 137 LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 137 LAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGV 211 (242)
T ss_pred HHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCccc
Confidence 367777888887765 455421 12235666777777776 899999999987 45567899999999
Q ss_pred EEcHHHH
Q 017492 307 FIGRPVV 313 (370)
Q Consensus 307 ~igr~~l 313 (370)
++|++.=
T Consensus 212 GVGSavn 218 (242)
T PF04481_consen 212 GVGSAVN 218 (242)
T ss_pred chhHHhh
Confidence 9999763
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-05 Score=72.71 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCC
Q 017492 214 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI 289 (370)
.+.++++|+..+ ...+.-.+.+.+++..+.++|+|.|.+.|- +.+.+.++++..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888888875 233344678999999999999999988762 4556666666543 36779999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+.+.++..+|+|.+.+|++..
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999999764
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-05 Score=72.34 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+-++.+.++|+|.|.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3567888899999988865322 1123455778888888876 79999999999999999999999999999998874
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=73.35 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=68.6
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecCC-----------HH----HHHHHHH----c--CccEEEEccCCcc---CCC---C
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQ----A--GAAGIIVSNHGAR---QLD---Y 262 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~~-----------~~----~a~~a~~----a--G~d~I~vs~~gg~---~~~---~ 262 (370)
.|..++|+.||+.++ -.|.+|+... .+ .++.+.+ . |+|+|.||..... +.. .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 467889999999984 3588887631 11 2333433 2 5999999853210 000 1
Q ss_pred ccch--HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 263 VPAT--IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 263 ~~~~--~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+... .....++++.+ ++||++.||| +.+++.++|+.| ||.|.+||+++.
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 1111 12446677776 7899999999 579999999999 999999999985
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00093 Score=63.92 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCHHHHHHHH-HcCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
.++++++.+. +.|+|++-++ + ||-+ .+...-.++.|.++++.+ ++|+++-| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~~-e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGISP-EDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCCH-HHHHHHHHcCCcEEE
Confidence 5789998887 4699999994 3 4422 222234678899999887 79999999 8855 889999999999999
Q ss_pred EcHHHHHHHHhc--------C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAAE--------G----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~~--------G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+.+.+..+.... . ..-.....+.+++..+..|+.+|..
T Consensus 229 v~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 229 VATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999887642110 0 0112333445666667777777643
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-05 Score=74.52 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=132.2
Q ss_pred ecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CCHHHHh---------------------ccCC---C
Q 017492 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP---G 123 (370)
Q Consensus 70 l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~~eei~---------------------~~~~---~ 123 (370)
+..=+++|||-=. |++++.-.|-+.|..++-+..-. .-++-+. ...| .
T Consensus 9 y~nk~iLApMvr~------G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~ 82 (477)
T KOG2334|consen 9 YRNKLILAPMVRA------GELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENS 82 (477)
T ss_pred hcCcEeeehHHHh------ccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcC
Confidence 4566889998322 57789999999999887764311 0011100 0111 3
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
...||+- ..+.+...+.. +........+.++++||-. |+.-.+ .+..
T Consensus 83 rlilQ~g-T~sa~lA~e~A-~lv~nDvsgidiN~gCpK~----------fSi~~g---------------------mgaa 129 (477)
T KOG2334|consen 83 RLILQIG-TASAELALEAA-KLVDNDVSGIDINMGCPKE----------FSIHGG---------------------MGAA 129 (477)
T ss_pred eEEEEec-CCcHHHHHHHH-HHhhcccccccccCCCCCc----------cccccC---------------------CCch
Confidence 4577764 23444433322 2233467778999999842 221100 0111
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEec--C----CHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHH
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGV--L----TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVK 275 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v--~----~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~ 275 (370)
+. .+++....++..+.+...+|+..|.. . +.+..++....|+.+|.| |+.+. ...-+++.+.+.++.+
T Consensus 130 lL--t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 130 LL--TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred hh--cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHHHH
Confidence 11 35566677899999999999999985 2 335578888999999999 54431 1234667788999988
Q ss_pred HccCCCcEEEecCCCC---HHHHHHHHH-hCCCEEEEcHHHHHH
Q 017492 276 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVYS 315 (370)
Q Consensus 276 ~~~~~ipvi~~GGI~~---~~dv~kala-lGAd~V~igr~~l~~ 315 (370)
.++ .+|||+.||..+ ..|+.+... .|++.||+.|...+.
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 873 499999999998 899988876 799999999976543
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.4e-05 Score=70.17 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++-++| .+-+.++++++.++|++.|-|-|..=+.+ ...++...++...++.+.-++..+||++++|+.+....|||
T Consensus 156 Gm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~ 231 (254)
T COG0134 156 GMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGAD 231 (254)
T ss_pred CCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCC
Confidence 444432 35677788888888888777766533222 22333455555666667889999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
++.||+++|..
T Consensus 232 a~LVG~slM~~ 242 (254)
T COG0134 232 AFLVGEALMRA 242 (254)
T ss_pred EEEecHHHhcC
Confidence 99999999863
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=65.76 Aligned_cols=93 Identities=22% Similarity=0.161 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCcEEE--EecCCHHHHHHHHHcCccEEEEcc-CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~v--K~v~~~~~a~~a~~aG~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++.+++ .++++++ =+..+++++..+...|+|.+.+.- ..+ +..+.....+.+.++.+. .++||+++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDA-QAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccc-cccCCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 4555554 4777765 356788888889999999988831 111 111124455667777654 379999999996 8
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+++.+++..|||+|.+||+++
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhc
Confidence 999999999999999999975
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=71.24 Aligned_cols=102 Identities=26% Similarity=0.309 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCC-------------cc---CCC--------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-------------AR---QLD-------------- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~g-------------g~---~~~-------------- 261 (370)
..+.++++.+.+++||++-+ +.+.++++.+.+.|++.+++...- |+ .+|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 57788898888899999875 689999999999999999885210 11 000
Q ss_pred CccchHHHHHH------------------------HHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 262 YVPATIMALEE------------------------VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 262 ~~~~~~~~l~~------------------------i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
......+.+.. +.+.. .++||+++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 11112222222 22221 2689999999999999999999999999999999764
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00029 Score=71.40 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCcEEEEec--CC-HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~-~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++.+++ .+.++++..+ .+ .+.++.+.+.|+|+|.++ .|.+....++..++.+.++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 5777776422 23 456788899999999774 22221112334456777777665 6999999999 67
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~ 314 (370)
+++.++++.||+.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999764
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-05 Score=72.13 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--------------CCcc-------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGAR------------------- 258 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--------------~gg~------------------- 258 (370)
..+.+++|.+.+ .|+.+.+ +.+.++++.+.++|++.+++.. +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 577888888877 7988865 6789999999999999988753 1110
Q ss_pred --CC------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-----C-CC
Q 017492 259 --QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 304 (370)
Q Consensus 259 --~~------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-----G-Ad 304 (370)
.. |+ .-+.++.+.++.+.. ++||+++||+++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 01 124556677776664 8999999999999999998887 6 99
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998753
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=77.52 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEE
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~ 285 (370)
++++..+.++++++. .+++.++.. ...+.++.+.++|+|.|+++++-..|.+.+.. .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 344456678888875 555555542 23466889999999999994321112333332 355566666655 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999996
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.5e-05 Score=71.38 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++..+.+.+. +.-|.-=...++..|+++.++||..|---+.. |+ .-|..+.+.|.-|.+.. ++||+.++||.+
T Consensus 126 tl~Aae~Lv~e-GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt 200 (267)
T CHL00162 126 TLKAAEFLVKK-GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGT 200 (267)
T ss_pred HHHHHHHHHHC-CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCC
Confidence 34444444432 34444333467888999999999998753321 11 12455677888777754 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
++|+.+++.+|||+|++.+++..
T Consensus 201 ~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 201 PSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred HHHHHHHHHcCCCEEeecceeec
Confidence 99999999999999999998764
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=68.58 Aligned_cols=88 Identities=26% Similarity=0.393 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCcEEEEe---------cCCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 216 DVKWLQTITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~---------v~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++...+++|+++-. ..+.+. ++.+.+.|+|+|..+-.| ..+.+.++.+.. ++|
T Consensus 130 ~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ip 198 (267)
T PRK07226 130 EVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVP 198 (267)
T ss_pred HHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCC
Confidence 34444455688987631 123333 577889999999986321 346677666644 799
Q ss_pred EEEecCCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q 017492 283 VFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 314 (370)
Q Consensus 283 vi~~GGI~--~~~dv~kal----alGAd~V~igr~~l~ 314 (370)
|+++|||+ +.+++++.+ .+||+++.+||.++.
T Consensus 199 V~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 199 VVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99999999 777776664 899999999999874
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.6e-05 Score=72.51 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=63.3
Q ss_pred CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++ +.|+.+.+.|+|.+.+.+.-+. .......++.+.++.+.+ ++||+++|||++.+|+.+++.+||+.|.+|++++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 5678888999999999764321 113456778888898877 7999999999999999999999999999999876
Q ss_pred H
Q 017492 314 Y 314 (370)
Q Consensus 314 ~ 314 (370)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=72.50 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.+-...+ ......++.+.++.+.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 366888889999999997543211 23356788899998877 79999999999999999999999999999998765
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=65.54 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccC---CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~---~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.+++..+.+.|+|+|.++....+. ....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 57889999999999999986431111 111345667788777654 79999999995 6999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9763
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=70.00 Aligned_cols=97 Identities=25% Similarity=0.363 Sum_probs=64.5
Q ss_pred cHHHHHHHHHh---cCCcEEEEecCCHHH-------------HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH
Q 017492 213 SWKDVKWLQTI---TKLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (370)
Q Consensus 213 ~~~~i~~ir~~---~~~Pv~vK~v~~~~~-------------a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (370)
..+.++++++. +++|+++-..+..++ ++.+.++|+|.|.++.. +. ........+.+.++.+.
T Consensus 110 ~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~ 187 (236)
T PF01791_consen 110 VIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEA 187 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHh
Confidence 34455555554 478888775444333 46778999999999754 11 11222333445555443
Q ss_pred ccCCCc----EEEecCC------CCHHHHHHHHHhCC--CEEEEcHHHH
Q 017492 277 TQGRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 313 (370)
Q Consensus 277 ~~~~ip----vi~~GGI------~~~~dv~kalalGA--d~V~igr~~l 313 (370)
. .+| |.++||| ++.+++.+++.+|| .++..||.++
T Consensus 188 ~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 188 A--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp H--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred c--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3 566 9999999 99999999999999 8888888754
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.8e-05 Score=69.85 Aligned_cols=100 Identities=18% Similarity=0.056 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Ccc--------------C---
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q--- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg~--------------~--- 259 (370)
..+.++++.+.+.+|+.+.+ +.+.++++.+.+.|+|.|+++.. |.+ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 56688999998899998865 68999999999999999988521 110 0
Q ss_pred --C-----------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH---HhCC
Q 017492 260 --L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 303 (370)
Q Consensus 260 --~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal---alGA 303 (370)
+ |+ .-+.++.+.++.+.. ++||+++||+++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 00 112344555555543 79999999999999998763 3599
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
++|.+|++++.
T Consensus 220 ~gvivg~Al~~ 230 (243)
T TIGR01919 220 SVAIGGKLLYA 230 (243)
T ss_pred eEEEEhHHHHc
Confidence 99999999875
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0017 Score=62.23 Aligned_cols=108 Identities=24% Similarity=0.332 Sum_probs=77.7
Q ss_pred CCHHHHHHHHH-cCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAVQ-AGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~~-aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
.++++|+.+.+ .|+|++.++ + ||-.. ....-.++.|.+|++.+ ++|+++=| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEEE
Confidence 47899999886 999999975 2 44221 12233578899999887 79999999 9965 889999999999999
Q ss_pred EcHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+.... . ..-.....+.+.+.+++.|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999876542210 0 1223344566777778888887753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.003 Score=58.01 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CCH----HHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 017492 89 GEYATARAASAAGTIMTLSSWST------SSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~------~~~----eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd 158 (370)
.|+.-.+.+.+.|..-+++|.-+ .+. .++.+..+++..+|++ ..+.+.+.+..++..+.. ..++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~-~~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLA-PNIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhC-CCeEEEe-
Confidence 56777888888888777776532 223 3344444567888986 445554444444443332 2233211
Q ss_pred CCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc---HHHHHHHHHhcCCcEEEEecCC
Q 017492 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKDVKWLQTITKLPILVKGVLT 235 (370)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~i~~ir~~~~~Pv~vK~v~~ 235 (370)
| .+ .+.++.+++ -++++-+=.+.+
T Consensus 85 -----------------P-----------------------------------~T~~Gl~A~~~L~~-~Gi~v~~T~vfs 111 (213)
T TIGR00875 85 -----------------P-----------------------------------MTSEGLKAVKILKK-EGIKTNVTLVFS 111 (213)
T ss_pred -----------------C-----------------------------------CCHHHHHHHHHHHH-CCCceeEEEecC
Confidence 1 12 334555554 388988888999
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|..+.++|+++|.. .-||--+.+...+..+.++.+.+ +.+..|++.+ +|+..++.+++.+|+|.|-+.-.+
T Consensus 112 ~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~v 188 (213)
T TIGR00875 112 AAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDV 188 (213)
T ss_pred HHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHH
Confidence 99999999999998876 33444444555666666666654 3467777655 999999999999999999999999
Q ss_pred HHHHHh
Q 017492 313 VYSLAA 318 (370)
Q Consensus 313 l~~~~~ 318 (370)
+..+..
T Consensus 189 l~~l~~ 194 (213)
T TIGR00875 189 MQQLFN 194 (213)
T ss_pred HHHHHc
Confidence 887653
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=75.83 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++-++| .+-+.++++++.++|++.|-|-|.. +.+-...+....++...++.++.+++.+||.+++|+..+..+|||
T Consensus 160 Gme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~d 235 (695)
T PRK13802 160 GMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGAD 235 (695)
T ss_pred CCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCC
Confidence 444433 3566777777777777777665543 222222334445555556667889999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.||+.+|.+
T Consensus 236 avLIGeslm~~ 246 (695)
T PRK13802 236 AVLVGEGVATA 246 (695)
T ss_pred EEEECHHhhCC
Confidence 99999988753
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00021 Score=66.30 Aligned_cols=82 Identities=27% Similarity=0.449 Sum_probs=60.6
Q ss_pred HhcCCcEEEEec---------CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 222 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 222 ~~~~~Pv~vK~v---------~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
..+++|+++=.. .+.+. ++.+.++|+|+|.+++.+ ..+.+.++.+.. .+||++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCC
Confidence 456888887321 12333 456889999999995422 456777777765 789999999
Q ss_pred C--CCHHH----HHHHHHhCCCEEEEcHHHHH
Q 017492 289 V--RRGTD----VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 289 I--~~~~d----v~kalalGAd~V~igr~~l~ 314 (370)
+ .+.+| +..++.+||++|.+||.++.
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 8 66666 77778899999999999874
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0023 Score=58.66 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~ 290 (370)
.+.++.+++. ++++-+-.+.+.+.+..+.++|+++|.. +-||--+.+...+..+.++.+.+. .+..|++ .|++
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r 166 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIR 166 (211)
T ss_pred HHHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccC
Confidence 3456666654 7899988999999999999999999654 445544555566666666666542 2344555 5699
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 291 RGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+..++..++.+|||.|-+.-.++..+..
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 9999999999999999999998887654
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00084 Score=62.22 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCcEEEEecC-C-HHHHHHHHHcC-ccEEEEcc-CCcc-CCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 215 KDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~-~-~~~a~~a~~aG-~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.++++++. +.-+.+-... + .+.++...+.| +|+|.+.. +.|. .....+..++.+.++++.. .++||.++|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 456666553 3322222221 3 44555555664 99997643 2222 1223344566677776653 35799999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
+.+++.+.+.+|||.+.+||+++.+ +.....++.++++++..|
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 6799999999999999999986531 223455666666666554
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0006 Score=61.75 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=48.7
Q ss_pred HHHHHHHHcCccEEEEcc-C-CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+.++.. ..++|+|.+.. + |++.........+.+.++++... .++|+++.|||+. +++.+++..|||++.+||+
T Consensus 119 ~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsa 196 (211)
T cd00429 119 EVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred HHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHH
Confidence 334433 33478876643 2 22211122233344555555431 2489999999996 9999999999999999999
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
++.
T Consensus 197 i~~ 199 (211)
T cd00429 197 LFG 199 (211)
T ss_pred HhC
Confidence 873
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.3e-05 Score=75.53 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC--C--------------c------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--G--------------A------------------ 257 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~--g--------------g------------------ 257 (370)
++++++.+|+.+++||+.|- +.++.....+..+|||+|.+.-. + |
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~ 177 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA 177 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence 67788888888888998886 35666666666667776655210 0 0
Q ss_pred ----------cCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHH
Q 017492 258 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 327 (370)
Q Consensus 258 ----------~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~ 327 (370)
|.+.+-........++...++.++.+++.+||.+++|+..+ ..|||+|.+|..+|.+ +...+.
T Consensus 178 ~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~ 250 (454)
T PRK09427 178 LGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELA 250 (454)
T ss_pred CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHH
Confidence 01111112233444555556667889999999999999775 5589999999999864 112223
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhc
Q 017492 328 LEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 328 l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
+..+ +......||.++.+|.+
T Consensus 251 ~~~L---~~~~vKICGit~~eda~ 271 (454)
T PRK09427 251 VRKL---ILGENKVCGLTRPQDAK 271 (454)
T ss_pred HHHH---hccccccCCCCCHHHHH
Confidence 3333 22346789999988876
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=63.14 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~ 290 (370)
.+.++.+|+..+-..+.-.+.+.+++..+.++|+|+|.+++-. +. .+.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~---~l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PE---ELAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HH---HHHHHHHHHhccCCCceEEEECCC-
Confidence 3567888876532223334578999999999999999997631 22 2233333221 36999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+++.++...|+|++.+|..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 8899999999999999777653
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=67.77 Aligned_cols=121 Identities=21% Similarity=0.159 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.+..+.|+++||+.+.+++.||.. .+.. + +. -.--+.+.|+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~-----g--------------------g~--------~Rm~~p~~I~ 67 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA-----G--------------------GV--------ARMADPKMIE 67 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc-----C--------------------Ce--------eecCCHHHHH
Confidence 456778899999999999999862 1100 0 00 0012567899
Q ss_pred HHHHhcCCcEEEEecC-CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH
Q 017492 219 WLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 297 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v~-~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k 297 (370)
++++.+++||+.|--. ...+|+.+.++|+|.|.-+..- .|.-+....++..+ ++|++ .|+++-++++.
T Consensus 68 aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~fm--ad~~~l~EAlr 136 (293)
T PRK04180 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPFV--CGARNLGEALR 136 (293)
T ss_pred HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCEE--ccCCCHHHHHH
Confidence 9999999999998754 3789999999999999643210 12223444444443 55555 57999999999
Q ss_pred HHHhCCCEEEEc
Q 017492 298 ALALGASGIFIG 309 (370)
Q Consensus 298 alalGAd~V~ig 309 (370)
++.+|||.|.--
T Consensus 137 ai~~GadmI~Tt 148 (293)
T PRK04180 137 RIAEGAAMIRTK 148 (293)
T ss_pred HHHCCCCeeecc
Confidence 999999988654
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=66.05 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=61.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..-.|. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4578888999999998763221 123356778888888876 79999999999999999999999999999998875
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=67.78 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.+.+.|+|.+.|....+. .......++.+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35678888999999999743221 112345678888888877 79999999999999999999999999999998764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00049 Score=64.79 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC--CCEEEEcHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVV 313 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG--Ad~V~igr~~l 313 (370)
.++.+.++.+.. ++||+++|||++.+|+.+...+| ...|.+|++++
T Consensus 195 d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 195 DEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 455666666665 89999999999999999988874 68899999984
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=65.69 Aligned_cols=96 Identities=27% Similarity=0.277 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CCHHH-----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc----
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---- 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~-----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---- 277 (370)
...++|+++++.++-++.+|.+ ++.++ .+.+.++|+|+|..|..-+ .+.++.+.+.-+++.+
T Consensus 116 ~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~ 191 (257)
T PRK05283 116 VGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMG 191 (257)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcc
Confidence 3456788888876534667876 34332 3568899999999986421 2234555555554544
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 278 -~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++++.|-++||||+.+++.+++.+|.+. +|.-|+
T Consensus 192 ~~~~vgIKAsGGIrt~~~A~~~i~ag~~~--lg~~~~ 226 (257)
T PRK05283 192 VAKTVGFKPAGGVRTAEDAAQYLALADEI--LGADWA 226 (257)
T ss_pred cCCCeeEEccCCCCCHHHHHHHHHHHHHH--hChhhc
Confidence 3578999999999999999999999764 344444
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=60.28 Aligned_cols=95 Identities=27% Similarity=0.349 Sum_probs=62.2
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--Ccc--CCCCc-cchHH-HHHHHHHHccCCCcEEEecCCC
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR--QLDYV-PATIM-ALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~--~~~~~-~~~~~-~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-.. -|+ ..... +.... .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 344443 3655443 456678888888999998876432 122 11111 11222 22333332 2368999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.+++..++..|||+|.+|++++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhC
Confidence 999999999999999999999985
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0052 Score=58.89 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCc-cchHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GG--I~~~~dv~kalalGAd~V 306 (370)
.++++++... +.|+|.+-++. ||-+ ++. ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678888877 89999999953 3322 122 24778899998877 799999998 86 488999999999999
Q ss_pred EEcHHHHHHHHh-------cC------H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------E-KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~-~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... .. . .-.....+.+++.++..|+.+|..
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654211 01 0 112333455666677777777643
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00036 Score=66.85 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCcE-EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCC
Q 017492 214 WKDVKWLQTITKLPI-LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv-~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI 289 (370)
.+.++.+|+..+... +--.+.+.+++..+.++|+|.|.++|-+ + +.+.++.+.+ ..++|+.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~-------~---e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP-------V---DLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 346888888775222 2234688999999999999999998632 3 3444443332 358999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+++.++.++|+|.+.+|++..
T Consensus 253 -t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEchhhh
Confidence 68999999999999999999765
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00034 Score=66.65 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+..+ .+|. -.+-+.+++..+.++|+|+|.+.|- +.+.+.++.+..+.++|+.++||| +.++
T Consensus 179 av~~~r~~~~~~~I~-VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVE-VEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHHhCCCCeEE-EEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence 4677776643 3332 3357899999999999999988652 345666666655458999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++..+|+|.+.+|.+..
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998654
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00055 Score=61.61 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=61.7
Q ss_pred ecCCHHHHHHHHHcCccEEEEccCCccCCC-C--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 232 ~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+.+++..+.+.|+|+|.++.-..+..+ . .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 357888888999999999998754322211 1 2235677777766542 5999999999 589999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 999863
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0082 Score=57.81 Aligned_cols=79 Identities=23% Similarity=0.398 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHcCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG--I~~~~dv~kalalGAd~V~i 308 (370)
.++++|..+.+.|+|++-++ + ||-+.-....-.++.|.+|.+.+. ++|+++=|| |.. +++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCH-HHHHHHHHcCCCEEEE
Confidence 47899999999999999998 3 554421122346788999998762 499999998 865 8899999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=64.39 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhh---h-cCCCCccccccccccccCccccccchhhHHHh--hhcCCCCcc
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV--AGQIDRSLS 213 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~---~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~ 213 (370)
++.+.-++.|+.+|-|-.|...++....+++. . ..+|- -.+.+. ++.-+..++...|+-..+ ....+ +-.
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~yQI~eAr~~GADAVLLIaaiL~-~~~ 218 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAWQIYYARSKGADAILLIAAVLP-DLD 218 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHHHHHHHHHcCCCcHHHHHHhCC-HHH
Confidence 45556678899999888888888777777653 2 33331 111110 000001111111111111 01011 112
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHH-----Hc-cCCCcEEEe
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QGRIPVFLD 286 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~-----~~-~~~ipvi~~ 286 (370)
.+.+-++.+..++-++| .+-+.+++.++.++ |++.|-|-|..=..+..-+ ....++.. .+ +.++-+++.
T Consensus 219 L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl---~~t~~L~~~~~~~~i~~~~~~~VsE 294 (338)
T PLN02460 219 IKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDI---SNTKKLLEGERGEQIREKGIIVVGE 294 (338)
T ss_pred HHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECH---HHHHHHhhhccccccCCCCeEEEEC
Confidence 33333444445666654 46888999999998 9998888775432222222 22233333 22 135668899
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+||++++|+.....+|||+|.||..+|..
T Consensus 295 SGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 295 SGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999999999863
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00071 Score=62.48 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEe--cCCHHHHHHHHHcCccEEEEccCCccCC-CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~--v~~~~~a~~a~~aG~d~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+..+|+..+--.++.. ..+.+++..+.+.|+|+|.++----+.. +..+..++.+..+.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234443 2467888889999999999864321111 12233456676676665 7999999999 789
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999874
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0034 Score=58.28 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.....+.++++++.|++.+ |+|.= - ..| + .+-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~Dim-D--------g~f------------------------------v---pn~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVM-D--------GHF------------------------------V---PNLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEecc-c--------Ccc------------------------------C---CCcC
Confidence 4567778889999999998865 44410 0 001 0 0113
Q ss_pred ccHHHHHHHHHhc-CCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccC-----------------------------
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQ----------------------------- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~----------------------------- 259 (370)
+..+.++++|+.+ ++|+-+|.- .+++. ++.+.++|+|.|.+...++..
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 4567888888887 788888875 55544 567888899988884322110
Q ss_pred ---C-----------------CC---ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 260 ---L-----------------DY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 260 ---~-----------------~~---~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
+ ++ .+..++-+.++++.. ..+.|.++|||+. +.+.++...|||.+.+||++..+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 00 011223334443332 2578999999987 68888889999999999996421
Q ss_pred HhcCHHHHHHHHHHHHHHHHH
Q 017492 317 AAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~~ 337 (370)
+...+.++.+++.++.
T Consensus 208 -----~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 -----KDRKQAIELLRESVQK 223 (228)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1133455666655544
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.012 Score=53.98 Aligned_cols=100 Identities=23% Similarity=0.173 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+...+..+.++|+++|.. .-||--+.+...+..+.++.+.+. .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 345555543 8899888899999999999999999876 335544556666777776666542 2455665 45999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
..++.++..+|||.+-+.-.++..+..
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLFK 194 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHHc
Confidence 999999999999999999988877654
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00054 Score=65.00 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=66.7
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++++|+..+ ...+--.+.+.++++.+.++|+|+|-+++- ..+.+.++.+.+..++|+.++||| +.++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4888888774 223334467899999999999999998663 225666666655446999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHH
Q 017492 295 VFKALALGASGIFIGRPV 312 (370)
Q Consensus 295 v~kalalGAd~V~igr~~ 312 (370)
+....+.|+|.+.+|...
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997654
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00079 Score=66.14 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=69.3
Q ss_pred HHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-C-CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+...|+..+ ..++--.+-+.+++..|.+.|+|+|.++-...+. . +..+..++.+..+.+.. .+||++-|||. .+
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 344455442 3343333467999999999999999987544332 1 12244567777777655 79999999995 79
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+.+.+||++|.+++.++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999873
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=66.60 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=53.2
Q ss_pred HHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 240 RIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..+.+.|+ ++.+..- -|+ ...+.++.+.++.+.. ++||+++|||++.+|+.++..+||++|.+|++++.+
T Consensus 148 ~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 148 DFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 44456777 5555321 122 2235678888888876 799999999999999999888999999999998753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=58.36 Aligned_cols=153 Identities=24% Similarity=0.334 Sum_probs=97.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.....+.+++.+++|++.+ ++|. + ...|. | +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV--M-------DghFV-P--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV--M-------DGHFV-P--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec--c-------CCCcC-C--------------------------------Ccc
Confidence 4677788899999999999876 4441 0 00110 1 123
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Cc---------cC------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg---------~~------ 259 (370)
|-...++++|+.++.|+-+=+ +.+++. .....++|+|.|.+.-. |- +.
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 456689999998888888765 455654 67888999999998521 10 10
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 260 ----LD-----------YV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~--~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
.| +| +..++-+.++++.... ++-|-+||||.. +.+-++.++|||.+..||++ |.
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSal-F~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSAL-FG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEE-eC---
Confidence 01 22 2344555666555432 567999999976 77877778999999999944 42
Q ss_pred cCHHHHHHHHHHHHHHH
Q 017492 319 EGEKGVRRVLEMLREEF 335 (370)
Q Consensus 319 ~G~~~v~~~l~~l~~el 335 (370)
+.+ ....++.++.++
T Consensus 203 -~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 203 -ADD-YKATIRELRGEL 217 (220)
T ss_pred -Ccc-HHHHHHHHHHHh
Confidence 222 334455555443
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=65.23 Aligned_cols=74 Identities=27% Similarity=0.239 Sum_probs=60.6
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..--+. .+.....+.+.++.+.+ .+||.+.|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 5678888899999987542221 13345678899998877 79999999999999999999999999999998764
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0047 Score=57.12 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.++++++.|++.+ |+|. + .|. ++ .+-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDi--m--------DG~-----------------------------FV---PN~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDV--M--------DNH-----------------------------YV---PNLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec--c--------cCc-----------------------------cC---CCcc
Confidence 4577788889999999998875 4441 0 000 01 1223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Ccc---------C-----
Q 017492 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GAR---------Q----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg~---------~----- 259 (370)
|..+.++++|+. ++.|+=+=+ +.+++. .....++|+|.|.+.-. |-+ .
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 567788999887 578876654 345554 67788889998888421 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+||+++
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 01 11 223444555544432 247799999997 4788888899999999999854
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=67.37 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGA 303 (370)
++-++.=...++..++++.++|+-+|---.. =|+ ..|....+.+..+.+.. ++||+.++||.+++|+.+++++||
T Consensus 197 Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGa 272 (326)
T PRK11840 197 GFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGC 272 (326)
T ss_pred CCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 3434333457899999999999955443111 011 12344667787777764 799999999999999999999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|.+.+++..
T Consensus 273 dgVL~nSaIa~ 283 (326)
T PRK11840 273 DGVLMNTAIAE 283 (326)
T ss_pred CEEEEcceecc
Confidence 99999998753
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.017 Score=53.35 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+++.+..+.++|+++|... -||--|.|......+.++.+.+ ..+..|++.+ +|+
T Consensus 96 ~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPy--vgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~ 171 (222)
T PRK12656 96 AAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAPY--YNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKN 171 (222)
T ss_pred HHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEecc--cchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCC
Confidence 345555543 78998888999999999999999998663 3443333433445555554443 3467777766 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
..++.+++.+|||.+-+.-.++..+.
T Consensus 172 ~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 172 VAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 99999999999999999998887764
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=59.45 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------C------------CccC-----------
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQ----------- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~------------gg~~----------- 259 (370)
+...|++|++.+.+||..|-. -..-+|+.+...|+|+|.=|- | |-+.
T Consensus 66 DP~mIKei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EG 145 (296)
T KOG1606|consen 66 DPRMIKEIKNAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREG 145 (296)
T ss_pred CHHHHHHHHHhccchhhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhc
Confidence 456899999999999998864 456788889999999987541 1 1110
Q ss_pred -------CCCcc------------------------------------chHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 017492 260 -------LDYVP------------------------------------ATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (370)
Q Consensus 260 -------~~~~~------------------------------------~~~~~l~~i~~~~~~~ipv--i~~GGI~~~~d 294 (370)
.+.|. .+++.+.+..+ -+++|| ++.||+.++.|
T Consensus 146 AAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q--~GrlPVV~FAaGGvaTPAD 223 (296)
T KOG1606|consen 146 AAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQ--LGRLPVVNFAAGGVATPAD 223 (296)
T ss_pred hhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHH--cCCCceEEecccCcCChhH
Confidence 00000 11122222222 147787 79999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHH-----HhcCHHHHH-----HHHHHHHHHHHHHHHHcCCCChhh
Q 017492 295 VFKALALGASGIFIGRPVVYSL-----AAEGEKGVR-----RVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~-----~~~G~~~v~-----~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
++-.+.+|+|+|.+|+.++.+- +..=.+.+. ..+-..-.+|-.+|.-...+++++
T Consensus 224 AALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~ 288 (296)
T KOG1606|consen 224 AALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKE 288 (296)
T ss_pred HHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhh
Confidence 9999999999999999665320 000000111 123445566667776665555543
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00054 Score=65.12 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=68.3
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|.+++- ..+.+.++.+..+.++|+.++||| +.++
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4788888774 223333457899999999999999999763 246677776655446999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++.+.|+|++.+|++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00071 Score=62.94 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CCC-----------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QLD----------- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~~----------- 261 (370)
..+.++++.+.+..|+.+.+ +.+.++++.+.+.|++.|+++.. |+ + .+|
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 45778888885445998875 68899999999999999988531 11 0 001
Q ss_pred -------------------------------C--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 262 -------------------------------Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 262 -------------------------------~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+ .-+.++.+..+.+. ..|++++|||++-+|+.++..+|+++|.+
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 0 01223334333322 34699999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 218 g~Aly~ 223 (232)
T PRK13586 218 GMAFYL 223 (232)
T ss_pred ehhhhc
Confidence 999874
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.021 Score=52.73 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHhccCC--CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~------~~----~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|.-+ .+ +.++.+..+ ++..+|++ ..|.+.+.+..++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~-ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIA-DIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46777778888888777876522 22 334444443 46777886 4555554444444444332 23321
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc---HHHHHHHHHhcCCcEEEEec
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKDVKWLQTITKLPILVKGV 233 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~i~~ir~~~~~Pv~vK~v 233 (370)
+ | .+ .+.++.+++. ++++-+=.+
T Consensus 86 I------------------P-----------------------------------~T~~Gl~A~~~L~~~-GI~vn~T~v 111 (220)
T PRK12653 86 V------------------P-----------------------------------VTAEGLAAIKMLKAE-GIPTLGTAV 111 (220)
T ss_pred e------------------C-----------------------------------CCHHHHHHHHHHHHc-CCCeeEEEe
Confidence 1 1 12 3345555543 789888889
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.+.|..+..+|+++|... -||--+.+...+..+.++.+.+ +.+..|++.+ +++..++.+++.+|+|.+-+.-
T Consensus 112 fs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 112 YGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred cCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCH
Confidence 99999999999999998763 3443333444445555554443 3356666655 9999999999999999999999
Q ss_pred HHHHHHHh
Q 017492 311 PVVYSLAA 318 (370)
Q Consensus 311 ~~l~~~~~ 318 (370)
.++..+..
T Consensus 189 ~vl~~l~~ 196 (220)
T PRK12653 189 DVAQQMIS 196 (220)
T ss_pred HHHHHHHc
Confidence 99887654
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.022 Score=52.55 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+.+.|..+..+|+++|... -||--+.|......+.++.+.+ +.+..|++.+ +++
T Consensus 94 ~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12655 94 AAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 345555543 78988888999999999999999988763 3443233444455555555443 2356666655 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcC--HHHHHHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 331 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G--~~~v~~~l~~l 331 (370)
..++.+++.+|||.+-+.-.++..+..+- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 170 PRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999999999888765432 24454444443
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00089 Score=63.70 Aligned_cols=87 Identities=26% Similarity=0.260 Sum_probs=65.4
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC--CCcEEEecCCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvi~~GGI~~ 291 (370)
..++++|+..+ ...+.-.+.+.+++..+.++|+|+|.+.+-. .+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 35788888874 2233344678999999999999999997631 2444544444433 78999999995
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q 017492 292 GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~ 312 (370)
.+++.++.+.|||++.+|+.+
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 238 LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHH
Confidence 599999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00057 Score=62.43 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
..+.+.+. +.-|..=...++-.++++.++||..|-=-+.. |+ .-|+-+.+.|.-|.+.. ++|||+|-||.++.|
T Consensus 122 Aae~Lv~e-GF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSd 196 (262)
T COG2022 122 AAEQLVKE-GFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSD 196 (262)
T ss_pred HHHHHHhC-CCEEeeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhH
Confidence 33444332 33333333456778999999999988532110 11 12455677888888876 899999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~ 314 (370)
+..++++|+|+|++-+++-.
T Consensus 197 Aa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 197 AAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred HHHHHhcccceeehhhHhhc
Confidence 99999999999999998643
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=59.75 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=71.2
Q ss_pred HHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCC--CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+...++..+-..++.. +-+.+++..+.+.|+|+|.++.-..+.- +..+..++.+..+.+.. .+|+++-|||. .+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 3445555544444444 3588999999999999999875444432 22344667888887765 69999999995 49
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
.+...+..||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999875
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0027 Score=56.69 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcCCcEEE--Eec---------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 213 SWKDVKWLQTITKLPILV--KGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v--K~v---------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
..++|+.+|+.+++|||- |-. .+.+++..+.++|+|.|-+........ .+..+.+.+|++. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~- 92 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---Y- 92 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---T-
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---C-
Confidence 467899999999999862 321 467999999999999999987543211 2333456666653 2
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.++...|.+-+|...+..+|+|.|.--
T Consensus 93 -~l~MADist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 93 -QLVMADISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp -SEEEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred -cEEeeecCCHHHHHHHHHcCCCEEEcc
Confidence 455556899999999999999998654
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0089 Score=54.25 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHH--HHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDA--RIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a--~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.++.+++..+.+++... +.+..+. ..+...|+|++.+.+..+.. ..+.+..|+.+.++. .++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECC
Confidence 4567778877777776222 2333332 34556899999886532111 112345677777654 2789999999
Q ss_pred CCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 289 VRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 289 I~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
| +++++.+++..| +++|-+.|.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 899999999999 999999998753
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0031 Score=57.37 Aligned_cols=199 Identities=19% Similarity=0.221 Sum_probs=110.1
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC---Ccchh-HHhhhhcCCCCccccccccccccCcccc-ccchh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMDE-ANDSG 199 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~---~g~r~-~d~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 199 (370)
...|+-. |.-.+.+.++-+++.+-...+|.+++|. .|.+. +.+|..| |.++....+.-.+.+.... .....
T Consensus 4 p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 4 PLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred cceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 4567653 4444555666666654446677888886 23222 4455544 5554443322111000000 00000
Q ss_pred hHHHhhhcC-CCCccHHHHHHHHHhcCCcEEEEec--CCHHHH-HHHHHcCccEEEEccCCcc--CCCCccchHHHHHHH
Q 017492 200 LAAYVAGQI-DRSLSWKDVKWLQTITKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEV 273 (370)
Q Consensus 200 ~~~~~~~~~-d~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a-~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i 273 (370)
...++.-.. -+.-+.+..-+..+.+++-+.+=++ .++++. +.+.++|+|.+.+ |-|+ |..+-.++++.|.++
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~i 157 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKI 157 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHH
Confidence 000100000 1112344333333345666666655 456665 4555599999999 6554 332333447788888
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
++.......|-+.||| +++++-.+...|++.|.+||++- +...+.+..+.+++++.
T Consensus 158 k~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 158 KKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred HHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 7766434789999999 56999999999999999999875 33344455566666664
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=62.58 Aligned_cols=88 Identities=25% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+..+-..++ =.+.+.++++.+.+.|+|+|.+.+ -..+.+.++++.+..++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888887532222 235789999999999999998854 2336677777665446888999999 779
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q 017492 294 DVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l 313 (370)
++.+..+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998754
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=61.87 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=61.2
Q ss_pred HHHHHHhcCCcEEEEec--------CCH---HH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 217 VKWLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v--------~~~---~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.++...+++|+++... .+. .. ++.+.++|+|+|.++.. ...+.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 44444456889887432 122 22 46778999999998521 2456777777654 79999
Q ss_pred EecCCC--CHHHH----HHHHHhCCCEEEEcHHHHH
Q 017492 285 LDGGVR--RGTDV----FKALALGASGIFIGRPVVY 314 (370)
Q Consensus 285 ~~GGI~--~~~dv----~kalalGAd~V~igr~~l~ 314 (370)
+.|||+ +.+++ ..++.+||+++.+||.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 54444 4455899999999998874
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=60.44 Aligned_cols=100 Identities=32% Similarity=0.441 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------C------------CccCC----------
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 260 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~------------gg~~~---------- 260 (370)
+.+.|++|.+.+.+||..|-. -...+|+.+...|+|+|.=|- | |.|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 567899999999999999974 567889999999999998651 1 11110
Q ss_pred --------C--Cc----------------------------------cchHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 017492 261 --------D--YV----------------------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (370)
Q Consensus 261 --------~--~~----------------------------------~~~~~~l~~i~~~~~~~ipv--i~~GGI~~~~d 294 (370)
. +| ..+++.+.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 00 0122333333332 46776 79999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~ 314 (370)
++-.+.+|||+|.+|+.++.
T Consensus 223 AALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHhCCCeEEecccccC
Confidence 99999999999999997654
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=62.13 Aligned_cols=87 Identities=23% Similarity=0.281 Sum_probs=66.1
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEEecC
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 288 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GG 288 (370)
+.++.+|+.. ..+| .=.+.+.+++..++++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kI-eVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVV-EVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcE-EEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 3577777765 3443 34468999999999999999999874 233444444432 24788999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
| +.+.+.++..+|+|.+.+|++..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 88999999999999999998764
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.02 Score=53.10 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC----------------Ccc---------C-----
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH----------------GAR---------Q----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~----------------gg~---------~----- 259 (370)
|..+.++++|+.++.|+=+=+ +.+++. .....++|+|.|.+.-. |-+ .
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 456678888887777766554 345554 67778889998887421 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
.| +| +..++-+.++++... .++.|.+||||.. +.+.+..++|||.+.+||..+|+.
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-KTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 11 223334444444331 2577999999984 788888899999999998766631
Q ss_pred HhcCHHHHHHHHHHHHHHHH
Q 017492 317 AAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~ 336 (370)
.+...+.++.+++.++
T Consensus 205 ----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 ----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred ----CCCHHHHHHHHHHHHH
Confidence 1123345556655443
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00091 Score=62.25 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++.+.+.|++.+.+-...+. .......+..+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 36688888999999987543211 112245567888888766 7999999999999999999999999999999765
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0019 Score=57.64 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+-+.++++.+.+.|+|++.+|--..+. .+..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-|
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 578899999999999999997533222 112344677888888776 7999999999 67999999999999999887
Q ss_pred H
Q 017492 311 P 311 (370)
Q Consensus 311 ~ 311 (370)
+
T Consensus 179 a 179 (180)
T PF02581_consen 179 A 179 (180)
T ss_dssp H
T ss_pred e
Confidence 6
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=60.62 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|++..+.|+|-+++-.-.. +.++..+.++.+.++.+.+ -+|+.+.|||++.+|+.+.|.+|||-|.+.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 4678999999999998632111 0112245667888888877 89999999999999999999999999999998764
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=61.18 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.|.+..-.+ .........+.+.++.+.. ++||+++|||++.+|+.+++..|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 457778889999988865322 1112345677888888876 79999999999999999999999999999998764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.017 Score=57.73 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 216 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.++.+++ .++-+++-.+ .++.+.......++|.|.+.. +.......+.+..+.++++. ..+++|.++|||. .+
T Consensus 268 ai~~akk-~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~e 342 (391)
T PRK13307 268 AIHEAQK-TGIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VE 342 (391)
T ss_pred HHHHHHH-cCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HH
Confidence 3455554 3555555322 344433333378999998842 11111224566677777665 3478999999998 78
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q 017492 294 DVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l 313 (370)
++.+++.+|||.+.+||++.
T Consensus 343 ti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 343 NVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HHHHHHHcCCCEEEEeHHHh
Confidence 89889999999999999854
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.012 Score=53.79 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++.+++|++.+ |+|. + ...| +| +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDv--M-------DG~F-VP--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDI--E-------DTSF-IN--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEec--c-------CCCc-CC--------------------------------ccc
Confidence 4567778889999999998865 4442 0 0001 01 113
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Ccc---------C------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GAR---------Q------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg~---------~------ 259 (370)
+..+.++++|+.++.|+=+=+ +.+++. .....++|+|.|.+.-. |.. .
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 456678888887777766654 345554 66778888888887421 110 0
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ----LD-----------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++.. ....|.+||||. .+.+.+..++|||.+.+||+++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 11 22333444444433 235799999997 4788888899999999999854
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0025 Score=58.86 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=59.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+-.-.+. ..+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5578888999999998643221 113344677888888876 79999999999999999999999999999987654
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=59.58 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC-------------------Cc-c---C---C---C--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-------------------GA-R---Q---L---D-- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-------------------gg-~---~---~---~-- 261 (370)
..+.++++.+.+++||.+.+....++++.+.++|++.+++++. |. + . . +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 5678899999889999998765559999999999999998640 11 0 0 0 0
Q ss_pred -----------CccchH------------------------------HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 262 -----------YVPATI------------------------------MALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 262 -----------~~~~~~------------------------------~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
.+...+ +.+.++.+. .++||+++||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~--~~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEW--SPIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhh--CCCCEEEECCCCCHHHHHHHHH
Confidence 011122 233333333 3799999999999999998755
Q ss_pred h--CCCEEEEcHHHHH
Q 017492 301 L--GASGIFIGRPVVY 314 (370)
Q Consensus 301 l--GAd~V~igr~~l~ 314 (370)
+ |...+.+|++++.
T Consensus 222 ~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKGKVDLTIGSALDI 237 (253)
T ss_pred hcCCCCcEEeeehHHH
Confidence 5 6566888888653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=68.54 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 315 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala-lGAd~V~igr~~l~~ 315 (370)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++-|.+.
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 34455555554 899999999999999999998 679999999988763
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=61.53 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=56.3
Q ss_pred CHH-HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++. .|+...+. ++.+.+..--|+ ..+.++.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 443 45666666 887776432221 123346778888888775 7999999999999999999999999999999765
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=61.02 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=59.9
Q ss_pred CH-HHHHHHHH-cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 235 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 235 ~~-~~a~~a~~-aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
++ +.|+...+ .|+|.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 55677777 69999988643221 123356778899998866 799999999999999999999999999999976
Q ss_pred H
Q 017492 313 V 313 (370)
Q Consensus 313 l 313 (370)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 5
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=62.44 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.-.+.|++.+.|-.- +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57789999999999987543 334778899998876 799999999998 9999999999999999997653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.094 Score=50.24 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHc-CccEEEEcc---CCccCCCC-ccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAVQA-GAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~~a-G~d~I~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~ 307 (370)
.++++|....+. |+|.+.++. ||-+...+ ..-.++.|.+|++.+ ++|+++=||+..+ +++.|++.+|..=|-
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 478889888876 999999864 44321111 112578899998877 8999999999665 556668899999999
Q ss_pred EcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977553211 00 1123334456677777788888754
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0018 Score=60.18 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=52.2
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC-cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
-.|...+.+-..++. +.+...+.+.++++.+ +. |+++.|||++.+++.+++..|||.|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 346666666533322 3456678888888876 56 999999999999999999999999999999875
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0077 Score=54.82 Aligned_cols=101 Identities=23% Similarity=0.273 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHH-HHHHHHHcCccEEEEcc---------------CCc---------cC------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAE-DARIAVQAGAAGIIVSN---------------HGA---------RQ------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~-~a~~a~~aG~d~I~vs~---------------~gg---------~~------ 259 (370)
+..+.++++|+.+++|+=+=+ +.+++ -.+...++|+|.|.+.- +|. +.
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 456788999988888877765 34554 36778888888888741 111 00
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ----LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++.. +.++.|.+||||+. +.+.+..++|||.+.+||.++
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 11 12 22344444444433 24699999999987 678888889999999999764
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.098 Score=48.75 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~-------~~~e----ei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|.-+ ...+ ++.+..+ ++..+|++ ..+.+.+.+..++..+.+- .++|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~-nv~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGE-NVYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CeEEE
Confidence 57777888888888778876522 1333 3344444 46788885 4555554444444444432 23332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~ 236 (370)
+ |.. . .+..--.+.++.+.+. ++++-+=.+.++
T Consensus 91 I--P~T------------------~--------------------------~~G~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I--PIT------------------N--------------------------TKGESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E--CCc------------------C--------------------------ccchhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 1 110 0 0000124456666554 889988889999
Q ss_pred HHHHHHHHc----CccEEEEccCCccCCCCccchHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~a----G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..+..+.++ |+++|.. .-||-.|.+......+.++.+.+. .++.|++.+ ||+..++.+++.+|||.|-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCH
Confidence 998755555 5888876 335544555555666666655442 356777766 9999999999999999999998
Q ss_pred HHHHHHH
Q 017492 311 PVVYSLA 317 (370)
Q Consensus 311 ~~l~~~~ 317 (370)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T PRK12376 201 DVLKKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0025 Score=58.07 Aligned_cols=80 Identities=29% Similarity=0.321 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+++++.+ ++.|....+++.++++.+.++|+++| ||-+ ...+.+..+.+ . ++|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 556799999887 47788888999999999999999999 4322 12233333332 2 677776 8999
Q ss_pred HHHHHHHHHhCCCEEE
Q 017492 292 GTDVFKALALGASGIF 307 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ 307 (370)
+.++.+|+.+||+.|=
T Consensus 111 ptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 111 PSEIMLALELGITALK 126 (204)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999874
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=54.20 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccC-C--CcEEEecCC
Q 017492 216 DVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG-R--IPVFLDGGV 289 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~-~--ipvi~~GGI 289 (370)
.++.+++. ++.+++-.. .+..+..+....++|+|.+... |++.....+...+.+.++++.... + .+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 35555543 444443322 2333333334456898876542 222111222234455555554321 1 447799999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+. +++.+++..|+|.|.+||+++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 98 8999988899999999999873
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0044 Score=54.80 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=63.9
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH---HccCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipvi~~GGI~ 290 (370)
+.++.+++..+ .+-+.=.+.+.+++..++++|+|.|.+.|. .+ +.+.++.+ ....++.|.++|||.
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 45788888763 332334578899999999999999999873 23 33444433 445679999999995
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
- +.+.++...|+|.+.+|+...
T Consensus 138 ~-~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 138 L-ENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp T-TTHHHHHHTT-SEEEECHHHH
T ss_pred H-HHHHHHHhcCCCEEEcChhhc
Confidence 4 889899899999999998754
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0044 Score=59.15 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+|+..+ .+|. -.+.+.+++..++++|+|.|.+.|- +.+.+.++.+.++.+.++.++|||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 46888888764 4443 3468999999999999999999873 3456666666666678999999994 5
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+.+.++..+|+|.+.+|....
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 889888889999999998654
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0068 Score=57.34 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCcEEEEec------CCHH-----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 216 DVKWLQTITKLPILVKGV------LTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v------~~~~-----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.+.+-.+.|++|+++ .. .+.. -++.+.+.|+|.|.+.- +. +.+.++.+.. .+||+
T Consensus 131 ~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVv 196 (264)
T PRK08227 131 QLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIV 196 (264)
T ss_pred HHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEE
Confidence 344455668999887 32 1211 26788999999998832 11 6777887765 79999
Q ss_pred EecCCCCH-HH----HHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRG-TD----VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~-~d----v~kalalGAd~V~igr~~l 313 (370)
..||=... +| +..++..||.+|.+||-..
T Consensus 197 iaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 197 IAGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 99999853 33 3447778999999999654
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.053 Score=51.85 Aligned_cols=107 Identities=13% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCHHHHHHH-HHcCccEEEEcc---CCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a-~~aG~d~I~vs~---~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~ 307 (370)
.+++++... .+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 467887664 479999999875 5543 2222 468899998887 8999999977666 677779999999999
Q ss_pred EcHHHHHHHHh--------c--C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAA--------E--G---EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~--------~--G---~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+... . . ..-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543211 0 0 1123334456777788888888754
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0039 Score=58.89 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=60.2
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 5578888999999998653221 112345778888888875 79999999999999999999999999999997653
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.017 Score=55.19 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~ 290 (370)
+.++.+|+..+ .+ +.=.+.+.++++.++++|+|.|.+.|- +.+.+.++.+.+ ..++.+-++|||
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI- 245 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI- 245 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 45888887764 34 344568999999999999999999773 223444444433 257889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
+.+.+.++..+|+|.+.+|.+
T Consensus 246 ~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CHHHHHHHHhcCCCEEEECcc
Confidence 568898888899999999976
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.017 Score=55.13 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~ 290 (370)
+.++.+|+..+ .+|. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+.++|||
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI- 244 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI- 244 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888653 4433 3467999999999999999999763 223333333333 357889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+++.++..+|+|.+.+|.++
T Consensus 245 ~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CHHHHHHHHhcCCCEEEeCcce
Confidence 5689999989999999999874
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0044 Score=59.30 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+|+..+ .+|. =.+.+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.++.+.++||| +.
T Consensus 185 ~av~~~r~~~~~~~kIe-VEv~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVE-VEVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DM 252 (290)
T ss_pred HHHHHHHHhCCCCCeEE-EECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CH
Confidence 45888888764 3443 3468999999999999999999874 345566666655567899999999 45
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+.+.++..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 889888889999999998654
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.021 Score=54.11 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=63.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++|++|++.+++||+-+.-.. ..+++.+.++|+|.|.-+..- .|..+.+..++... ++|++ .+++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~M--AD~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFV--CGARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEE--ccCCC
Confidence 67899999999999998765333 789999999999999532210 12334555555543 45554 57999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
-+++..+..+|||.|.--
T Consensus 122 leEal~a~~~Gad~I~TT 139 (283)
T cd04727 122 LGEALRRISEGAAMIRTK 139 (283)
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999988543
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.063 Score=50.39 Aligned_cols=201 Identities=20% Similarity=0.229 Sum_probs=107.5
Q ss_pred ceeEcCeeecCceee-cccccccccCChhhHHHHHHHHHcCCceeecC-CCCCCHHHHhccCCCceEEEEeecCChHHHH
Q 017492 62 NTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLYVYKDRNVVA 139 (370)
Q Consensus 62 s~~l~g~~l~~Pi~i-apm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~ 139 (370)
-+.+-+.....+.+| .|.+.- ..+--..+|+.+++.|+.+.... +.+ +. .+.-|| +-..+-+.
T Consensus 5 ~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kp-------Rt--s~~sf~---G~G~~gl~ 69 (250)
T PRK13397 5 MSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKP-------RT--SAASFQ---GLGLQGIR 69 (250)
T ss_pred eEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCC-------CC--CCcccC---CCCHHHHH
Confidence 333444444444444 454332 22233579999999999988743 211 11 234444 22345566
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHH
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (370)
.+.+.+++.|...+- ++-.+ +.-+....+ .+-+. +.. ......+.+++
T Consensus 70 ~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~--vdilq-----------------------Igs--~~~~n~~LL~~ 117 (250)
T PRK13397 70 YLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY--LDVIQ-----------------------VGA--RNMQNFEFLKT 117 (250)
T ss_pred HHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc--CCEEE-----------------------ECc--ccccCHHHHHH
Confidence 666667778876543 21111 111111111 00000 000 00114556777
Q ss_pred HHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc---cchHHHHHHHHHHccCCCcEEEe----
Q 017492 220 LQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD---- 286 (370)
Q Consensus 220 ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvi~~---- 286 (370)
+.+ +++||++|.- .++++ ++.+.+.|..-|.+.-.|-+..... ...+..++.+++.. .+||+++
T Consensus 118 va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs 194 (250)
T PRK13397 118 LSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHS 194 (250)
T ss_pred HHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCCC
Confidence 655 5999999965 56666 4555678887776653243222211 33455677776655 7899997
Q ss_pred cCCCC--HHHHHHHHHhCCCEEEEcHHH
Q 017492 287 GGVRR--GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 287 GGI~~--~~dv~kalalGAd~V~igr~~ 312 (370)
+|.|. ..-...|+++|||++++-+-+
T Consensus 195 ~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 195 TGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133556788999999998743
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0027 Score=58.91 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=56.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+..-.+. ..+.+...+.+.++.+.+ .+||.++||||+.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 5577777899999987532111 123355778888998876 69999999999999999999999999999998764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=59.17 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.|+...+.|+|.+.+..-.+. .+.......+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 35688888999999998653222 13456678888888876 6899999999999999999999999999999654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0058 Score=58.54 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH---ccCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvi~~GGI~ 290 (370)
+.++++|+..+ .|| .=.+.+.+++..++++|+|.|.+.|- +.+.+.++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~kI-eVEv~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLPC-EVEVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCCE-EEEcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45788887653 554 34568999999999999999999873 13334433332 2457889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+.+.++..+|+|.+.+|.+..
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 55889888889999999998764
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0048 Score=59.17 Aligned_cols=86 Identities=24% Similarity=0.264 Sum_probs=67.2
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+.. ..|| .-.+-+.+++..++++|+|.|.+.|- +.+.+.++.+..+.++.+.++|||. .+
T Consensus 197 ~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 4577777765 3554 34568899999999999999999873 2356666666555688999999994 58
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
.+.++-.+|+|.+.+|.+.
T Consensus 265 ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 265 TLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHhcCCCEEEeCccc
Confidence 8988888999999999864
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.028 Score=52.85 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=95.5
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCC---------CC------------CH---HHHhccCC-CceE
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS------------SV---EEVASTGP-GIRF 126 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~---------~~------------~~---eei~~~~~-~~~~ 126 (370)
.||+.+..|.+ -.|+.+.+.|+.+.+.-.+ |. .+ +||....+ .|.+
T Consensus 15 ~pIig~gaGtG---------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGTG---------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESSH---------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeeccc---------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 47766554433 4899999999998873211 10 01 34444444 5788
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
+-+....+...+...+++.++.||..+. | -|..|-=....|+. +..
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~-N--fPTvgliDG~fR~~-------------------------------LEe 131 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ-N--FPTVGLIDGQFRQN-------------------------------LEE 131 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHH-------------------------------HHH
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE-E--CCcceeeccHHHHH-------------------------------HHh
Confidence 8887655556778889999999998864 3 35432111111110 000
Q ss_pred cCCCCc--cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc---CCcc-CCCCccc---hHHHHHHHHHH-
Q 017492 207 QIDRSL--SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKA- 276 (370)
Q Consensus 207 ~~d~~~--~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~---~gg~-~~~~~~~---~~~~l~~i~~~- 276 (370)
..-.| -.+.|+.-++. + =+.+--+.++++|+...++|+|.|++.- .||+ ..+...+ ..+.+.++.++
T Consensus 132 -~Gmgy~~EVemi~~A~~~-g-l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 132 -TGMGYDREVEMIRKAHEK-G-LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp -TT--HHHHHHHHHHHHHT-T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHC-C-CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 00011 22344444443 2 2333446799999999999999999842 1222 1112222 11233444443
Q ss_pred --ccCCCcEEE-ecCCCCHHHHHHHHHh--CCCEEEEcHHH
Q 017492 277 --TQGRIPVFL-DGGVRRGTDVFKALAL--GASGIFIGRPV 312 (370)
Q Consensus 277 --~~~~ipvi~-~GGI~~~~dv~kalal--GAd~V~igr~~ 312 (370)
+++++-+++ -|-|.+++|+...+.. |+++..-|+.+
T Consensus 209 ~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 209 RAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 234544444 4568999999998883 57888777754
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=55.70 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++|++|++.+++||+-|.- ....+|+.+.++|+|.|.-|..- .|.-+.+..++..+ ++|++ .|+++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 678999999999999998864 34789999999999999643211 12333444444433 45554 57999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
-++++.++..|||.|.--
T Consensus 124 l~EAlrai~~GadmI~Tt 141 (287)
T TIGR00343 124 LGEALRRINEGAAMIRTK 141 (287)
T ss_pred HHHHHHHHHCCCCEEecc
Confidence 999999999999987543
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0068 Score=57.82 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.++.+|+..+ .+|. =.+.+.+++..++++|+|.|.+.|- +.+.+.++.+.++.+..+.++||| +
T Consensus 180 ~~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~ 247 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-N 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-C
Confidence 345888888764 3443 4478999999999999999999884 345566666655567789999999 4
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
.+.+.++..+|+|.+.+|.+..
T Consensus 248 ~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 248 LNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 5889888889999999998653
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0074 Score=56.16 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=58.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+-.-.+.. +.....+.+.++.+.. ..|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 55788888999999986543321 3345667888887743 24999999999999999999999999999997653
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0039 Score=57.39 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|..+...|...|.+.. .|. ....+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe~-SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEY-SGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4566778888887862 222 245667777777642 68999999999999999999999999999998864
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.008 Score=57.61 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=65.5
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+... .+|. =.+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++||| +.+.
T Consensus 195 av~~~r~~~~~~kIe-VEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQ-IEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCcEE-EEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4666766542 3433 3468899999999999999999884 345566666555557889999999 4588
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++..+|.|.+.+|....
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 9888889999999998653
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.017 Score=52.87 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC-CC--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-+.+++..+.+.|+|+|.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 457788999999999999997433221 11 1233556677666542 269999999997 699999999999999999
Q ss_pred HHHHH
Q 017492 310 RPVVY 314 (370)
Q Consensus 310 r~~l~ 314 (370)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 99863
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0046 Score=56.37 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=51.8
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45566789999988543232 2223467888888876 799999999999999999888999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=60.80 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccC-CC-CccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
....|+..+-..++.. +.+.+++..+.+.|+|+|.++--..+. .. ..+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 3455555433333443 468899999999999999876322221 11 2223567777776654 79999999995 79
Q ss_pred HHHHHHHhCCC---EEEEcHHHHH
Q 017492 294 DVFKALALGAS---GIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd---~V~igr~~l~ 314 (370)
++.+.+++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999863
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=47.99 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++. ||.+......-.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|-+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5688887765 57999999874 55432101123567899999988 7999998877666 5588899999999999
Q ss_pred cHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCC
Q 017492 309 GRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 309 gr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~ 344 (370)
++.+..+.... . ..-.....+.+.+.++..|..+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99876542210 0 011233344566666666766664
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0063 Score=56.09 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.2
Q ss_pred cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 245 aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.|...|.+-..||. +.+-+.+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57777776543333 23345677888877653 69999999999999999999999999999998764
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=50.59 Aligned_cols=204 Identities=21% Similarity=0.234 Sum_probs=110.7
Q ss_pred ccceeEcCeeec--Cc-eeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChH
Q 017492 60 DMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 60 d~s~~l~g~~l~--~P-i~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~ 136 (370)
++.+.+.|..+. .| +++.|... -..+.-..+|+.+++.|+.+.....- . -+. .|..|| +-..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~--k----pRt--sp~~f~---g~~~e 169 (360)
T PRK12595 104 DTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAF--K----PRT--SPYDFQ---GLGVE 169 (360)
T ss_pred CCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEcccc--C----CCC--CCcccc---CCCHH
Confidence 444444443332 34 45566332 22333457888999999887774221 0 001 234444 33456
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
....+-+.+++.|...+. ++ .. .+.-+....+ .+ -+. +.+ ..-..++.
T Consensus 170 ~l~~L~~~~~~~Gl~~~t-~v---~d-~~~~~~l~~~-vd-~lk-----------------------I~s--~~~~n~~L 217 (360)
T PRK12595 170 GLKILKQVADEYGLAVIS-EI---VN-PADVEVALDY-VD-VIQ-----------------------IGA--RNMQNFEL 217 (360)
T ss_pred HHHHHHHHHHHcCCCEEE-ee---CC-HHHHHHHHHh-CC-eEE-----------------------ECc--ccccCHHH
Confidence 666666677788877653 21 11 1111111111 01 000 000 00124566
Q ss_pred HHHHHHhcCCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCC---CccchHHHHHHHHHHccCCCcEEEec
Q 017492 217 VKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++++.+ ++.||++|.. .+.++. ....+.|.+-|++.-+|-+... .....+..++.+++.. .+||+.|.
T Consensus 218 L~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~ 294 (360)
T PRK12595 218 LKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDV 294 (360)
T ss_pred HHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeC
Confidence 777765 6899999975 477774 3445678877776543533222 1123566788777755 68999964
Q ss_pred CCCCH----H--HHHHHHHhCCCEEEEcHHH
Q 017492 288 GVRRG----T--DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 288 GI~~~----~--dv~kalalGAd~V~igr~~ 312 (370)
.=..| . -...|+++|||++++-+-+
T Consensus 295 ~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 295 THSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 43232 2 3445788999999998866
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.32 Score=46.66 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5788887655 58999999874 4533 2333 567899998887 7999998876666 77888999999999
Q ss_pred EEcHHHHHHHHhc--------C-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAAE--------G-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~~--------G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+-.+.... . ..-.....+.+++.++..|+.+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999765432110 0 1223344556777778888888754
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.31 Score=46.79 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. .+++.|++.+|..-|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688887655 57999999874 554421 1122567899999987 799888774333 47778899999999999
Q ss_pred cHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554221 00 1123334456677777777777754
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.008 Score=55.62 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=44.7
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
=.|...|.+-...|+ .++.+ ..+.++++.+ .++|+|..||||+.+++.+++..|||.|.+|..+..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 367888887542222 22222 3444455544 489999999999999999999999999999999865
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.44 Score=44.44 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHHHHh----ccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST-------SSVEEVA----STG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~-------~~~eei~----~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|..+ ...+++. +.. +++..+|++ ..|.+.+.+..++..+.+ ..++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~-~nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWG-NNVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcC-CCeEEE
Confidence 46777888888888778876522 1233332 222 357888986 455555555555554454 233332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~ 236 (370)
+ |.. .. ......+.++.+++. ++++-+=.+.++
T Consensus 91 I--P~T------------------~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT------------------NT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc------------------Cc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 2 110 00 001135567777665 788888889999
Q ss_pred HHHHHH---HHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a---~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..+..+ ..+| +++|... -||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSVF--AGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 888764 4589 6888763 35544555555556665555442 367888877 9999999999999999999998
Q ss_pred HHHHHHH
Q 017492 311 PVVYSLA 317 (370)
Q Consensus 311 ~~l~~~~ 317 (370)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T TIGR02134 201 DILAKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887664
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.24 Score=47.55 Aligned_cols=108 Identities=25% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc--chHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+... +.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887766 57999999874 55432 123 3678899999988 8999999977766 57888999999999
Q ss_pred EEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987543211 00 1223344566777777788887754
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.32 Score=46.67 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~i 308 (370)
.++++|+.-. +.|+|.+-|+. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887655 58999999874 554421 1123567899999887 789887774333 36788899999999999
Q ss_pred cHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 232 ATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 00 1113334456677777777777753
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.023 Score=57.25 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=67.1
Q ss_pred HHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccC-C--CCccchHHHHHHHHHHcc-------CCCcEEEe
Q 017492 218 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ-L--DYVPATIMALEEVVKATQ-------GRIPVFLD 286 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~-~--~~~~~~~~~l~~i~~~~~-------~~ipvi~~ 286 (370)
..+|+..+--.++..+ -+.+++.++.+.|+|+|.++----+. . ...+-.++.+.++++.+. ..+||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444444322344443 57899999999999999986422221 1 223345667766665542 26999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||| +.+++...++.||++|.+=|+++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 779999999999999999999874
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=55.21 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.-.+.|++.+.|-.-+| +.+...+.+.+|++ + .+||-+.||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4668889999999998754332 22445778888887 5 699999999997 9999999999999999997664
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0083 Score=56.16 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=58.6
Q ss_pred CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+| +.|+...+.|+|.+.+..--+. ..+.+...+.+.++.+.+ .||.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 44 5578888999999987542221 123355678888888764 599999999999999999999999999999654
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=54.23 Aligned_cols=81 Identities=26% Similarity=0.222 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcC----CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 213 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 213 ~~~~i~~ir~~~~----~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
..+.|+.+++.++ +-|.+..+++.++++.+.++|+++|+- -+ ...+.+..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 5567999998873 556777789999999999999999953 21 1122333322 22 566665 8
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q 017492 289 VRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~i 308 (370)
..|+.++..++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=66.16 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=89.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~-~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++|..+++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|.+|+.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 34778889999999999865322223445555555555544 45788888 8999999999999999999995544
Q ss_pred HHH--HHHHhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 311 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 311 ~~l--~~~~~~G------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
++- ..+...| .+.+.++++.+.++|...|..+|.+++..-++..+.-
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFE 735 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFE 735 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccccc
Confidence 431 1111223 3668899999999999999999999999888776553
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=52.12 Aligned_cols=81 Identities=27% Similarity=0.323 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.++.+++.++ +++....+.+.+.++.+.++|+|+|...+ . .. .+.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~-~~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DP-EVVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CH-HHHHHHHHc--CCcEEC--CcCC
Confidence 4557999999875 66777778899999999999999995421 1 11 233333333 567765 8889
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
.+++.+++.+|||.+.+
T Consensus 107 ~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 107 PTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999998
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.034 Score=50.51 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.+++.|++.+++.+-. .|
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~------------------------------------------------~d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALT------------------------------------------------ED 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BE------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeEC------------------------------------------------CC
Confidence 555556777888888899999998864210 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. +.|+.+=-. .+++. .+.+.+.|++.|-.|+.-. .....++.|.++.+...+++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 345666777777765 678776543 34444 4678899999998764321 2233456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-hCCCEEE
Q 017492 284 FLDGGVRRGTDVFKALA-LGASGIF 307 (370)
Q Consensus 284 i~~GGI~~~~dv~kala-lGAd~V~ 307 (370)
++.|||+. +.+.+.++ .|+..+=
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEe
Confidence 99999977 67777777 8887653
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.035 Score=53.57 Aligned_cols=92 Identities=22% Similarity=0.197 Sum_probs=59.6
Q ss_pred HHHHHHhcCCcEEEEec------C---CH----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 217 VKWLQTITKLPILVKGV------L---TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v------~---~~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.+-.+.|++|+++-.. . .+ .-++.+.+.|||.|.+--.+ +.+....+.+.++.+.+ +.+||
T Consensus 159 v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpV 233 (304)
T PRK06852 159 IIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKV 233 (304)
T ss_pred HHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcE
Confidence 33344557999886321 1 11 22678899999999985321 00012346677777654 37999
Q ss_pred EEecCCCCH-HHHH----HHHH-hCCCEEEEcHHHH
Q 017492 284 FLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~-~dv~----kala-lGAd~V~igr~~l 313 (370)
++.||=... .|++ .++. .||.+|.+||-..
T Consensus 234 viaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 234 VCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999998853 3344 4666 7999999999654
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.54 Score=45.54 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHH--------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 293 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~-------------- 293 (370)
.++++|..-. +.|+|.+-++- ||-+... +.| .++.|.+|.+.+ ++|+..=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4688887655 57999999874 5543211 333 567899999887 89999988766666
Q ss_pred --------HHHHHHHhCCCEEEEcHHHHHHHHhc--------C-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 294 --------DVFKALALGASGIFIGRPVVYSLAAE--------G-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 294 --------dv~kalalGAd~V~igr~~l~~~~~~--------G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.|++.+|..-|-+++.+..+.... . ..-.....+.+++.++..|..+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 79999999999999999775542210 0 1123334456667777777777754
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.42 Score=45.77 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|++.+ ++|+..=||=..+ +++.+++.+|..-|-+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 4678876654 69999999874 554321 1123567899999887 7898887755443 6677799999999999
Q ss_pred cHHHHHHHHh--------cC-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA--------EG-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~--------~G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 230 ATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654211 00 1223344566677777778777754
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=55.23 Aligned_cols=72 Identities=29% Similarity=0.213 Sum_probs=55.9
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.++...+.|++.+.+.---+.. +.+...+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3455577888888775321111 3355678889998876 6899999999999999999999999999999754
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.079 Score=47.92 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEec------------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV------------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v------------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (370)
..++|+.+++.+++||| ..+ .+.++...+.++|++.|.+...-....++ +++ ++.+.. ..
T Consensus 54 gv~dIkai~~~v~vPII-GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~-k~ 125 (229)
T COG3010 54 GVEDIKAIRAVVDVPII-GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARI-KY 125 (229)
T ss_pred chhhHHHHHhhCCCCeE-EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHh-hc
Confidence 46688999999999986 322 45689999999999999987653321111 232 222222 13
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
-..++.-.+++.+|..-|..+|+|.|+-
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 3467777899999999999999999854
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.009 Score=57.77 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC-C-CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+-+.+++..|.+.|+|+|.++--..+. . +..+..++.+.++++.. ++||++-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 467888999999999999987433221 1 12223467777777765 7999999999 88999999999999998876
Q ss_pred HH
Q 017492 311 PV 312 (370)
Q Consensus 311 ~~ 312 (370)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0082 Score=54.91 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEec--C-CHHH-HHHHHHcCccEEEEccCCccC-------------CC------C------
Q 017492 212 LSWKDVKWLQTITKLPILVKGV--L-TAED-ARIAVQAGAAGIIVSNHGARQ-------------LD------Y------ 262 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v--~-~~~~-a~~a~~aG~d~I~vs~~gg~~-------------~~------~------ 262 (370)
+..+.++++|+.+.+|+=+|.. . +++. ++.+.++|+|.+.++...|.. .. .
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 4567899999877666668874 2 3333 477889999999996432210 00 0
Q ss_pred --------------------c----cchHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 263 --------------------V----PATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 263 --------------------~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~~~ 317 (370)
| ....+-+.++++....++ .+++|||+... ++.+++..|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 0 001122223333322122 34999999853 6778888999999999986531
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 017492 318 AEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el~ 336 (370)
. -..+.++.++++++
T Consensus 199 ---~-d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---A-DPREAAKAINEEIR 213 (215)
T ss_pred ---C-CHHHHHHHHHHHHh
Confidence 1 13445666666554
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.099 Score=48.46 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCcEEEEec----CCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHcc---CCCcEEE
Q 017492 215 KDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFL 285 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v----~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~ 285 (370)
+.++++|+. +.++-+... .+.+..+..++. +|.|.+=. -|..+...-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 456777765 442222222 345666666654 78887632 222112233344555555554432 2577999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
||||+. +.+.+..++|||.+.+|++++
T Consensus 185 DGGI~~-~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMTL-ELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCCH-HHHHHHHHCCCCEEEEChhhh
Confidence 999974 788888899999999999853
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=48.69 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+..+..++. +|.|.+=. -|......-+..++-+.++++... .++.|-+||||.. +.+.+..++|||.+.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEE
Confidence 345666666654 78777532 221112223444455555544432 2578999999976 6888889999999999
Q ss_pred cHHHH
Q 017492 309 GRPVV 313 (370)
Q Consensus 309 gr~~l 313 (370)
||+++
T Consensus 221 GSalF 225 (254)
T PRK14057 221 GSALF 225 (254)
T ss_pred ChHhh
Confidence 99854
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=52.02 Aligned_cols=82 Identities=28% Similarity=0.280 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
...+.|+.++++. ++-|.+..+.+.++++.+.++|+++++--+ -..+.+..+.+. ++|++- |+.
T Consensus 45 ~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~iP--G~~ 109 (196)
T PF01081_consen 45 NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYIP--GVM 109 (196)
T ss_dssp THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEEE--EES
T ss_pred cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCcccC--CcC
Confidence 3467789898887 566777778999999999999999995421 122344444433 566664 789
Q ss_pred CHHHHHHHHHhCCCEEEE
Q 017492 291 RGTDVFKALALGASGIFI 308 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~i 308 (370)
|+.++..|+.+||+.|=+
T Consensus 110 TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 110 TPTEIMQALEAGADIVKL 127 (196)
T ss_dssp SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998865
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.041 Score=51.80 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.+++||.+.. +.++++++.+.+.|+|+++|..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 4459999998999999974 6789999999999999999954
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.52 Score=45.19 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-|+. ||.+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887655 67999999874 5543 2333 567899999887 7898888754443 66777999999999
Q ss_pred EEcHHHHHHHHh--------c--C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA--------E--G---EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~--------~--G---~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... . . ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 0 0 1123334456667777777777753
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.022 Score=52.94 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=68.4
Q ss_pred ceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 124 IRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 124 ~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
..|+.|-.-.|.. ...+.++++++. |+..+-+..|.|+..+|..++.-.+-.|.
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl------------------- 151 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL------------------- 151 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 3466654433322 234556666665 99988777788887777766521111110
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +..-.+++.|+.+++..++||++-+ +.+++|+..+++.|+|++.+.
T Consensus 152 ----g~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 152 ----GSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred ----CcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 000111 1112257889999998899999875 789999999999999999884
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=54.92 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=54.8
Q ss_pred HHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.++.+...| +|+|+|++.+ .+.++.++.|.++++.. .++|+++.||+ +++.+.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~-~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETV-KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhcc-CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 4577777666 9999998753 13356788888887754 36899999999 45999999887 99999999863
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.021 Score=51.92 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+++++.. ++-|....+++.++++.+.++|+++|+- -+ ...+.+..+.+ . ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P~---------~~~~vi~~a~~-~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-PG---------TTQELLAAAND-S--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHHH-c--CCCEe--CCCCC
Confidence 456788888877 4557777789999999999999999843 21 12233333332 2 45544 58999
Q ss_pred HHHHHHHHHhCCCEEE
Q 017492 292 GTDVFKALALGASGIF 307 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ 307 (370)
+.++..++.+||+.|=
T Consensus 107 ptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 107 PSEVMALREEGYTVLK 122 (201)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999874
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.087 Score=49.62 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=54.2
Q ss_pred HHHHHH-HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a-~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.++.+ ...++|+|+|++.. .+.+++.+.+.++++.+ .+||++.+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 334454 57899999998742 13467888899999887 49999999985 5889888764 999999998753
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.03 Score=54.80 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=51.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++.++++|+|.|.++.+.|.. ....+.+.++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 55788899999999987543321 234566777777643 588887 99999999999999999999873
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.034 Score=53.62 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=66.9
Q ss_pred HHHHHHHhcC-----CcEEEEecCCHHHHHHHHH------cCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCc
Q 017492 216 DVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 216 ~i~~ir~~~~-----~Pv~vK~v~~~~~a~~a~~------aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.++.+|+..+ .+|. -.+.+.+++..+++ +|+|.|.+.|- .... ...+.+.+.++.+.++.+.+
T Consensus 189 av~~~r~~~~~~~~~~kIe-VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKIE-VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHhhhhcCCCeeEE-EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCce
Confidence 4666666321 2332 34678999999999 99999999884 1111 11245666666666666789
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+-++|||. .+.+.++..+|+|.+.+|....
T Consensus 265 lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 99999995 5889888889999999998653
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.038 Score=54.02 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHhcCCcEEEEec------CC-------HH----HHHHHHHcCccEEEEccCC---c-------cCC------CCccch
Q 017492 220 LQTITKLPILVKGV------LT-------AE----DARIAVQAGAAGIIVSNHG---A-------RQL------DYVPAT 266 (370)
Q Consensus 220 ir~~~~~Pv~vK~v------~~-------~~----~a~~a~~aG~d~I~vs~~g---g-------~~~------~~~~~~ 266 (370)
=.+.|++|+++-.. .+ ++ -++.+.+.|||.|.+--.+ + ... ......
T Consensus 187 ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~ 266 (348)
T PRK09250 187 EAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHP 266 (348)
T ss_pred HHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccch
Confidence 34457999887432 11 11 2678899999999985332 1 000 011123
Q ss_pred HHHHHHHHHHc-cCCCcEEEecCCCCH-HH----HHHH---HHhCCCEEEEcHHHHH
Q 017492 267 IMALEEVVKAT-QGRIPVFLDGGVRRG-TD----VFKA---LALGASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~-~~~ipvi~~GGI~~~-~d----v~ka---lalGAd~V~igr~~l~ 314 (370)
.+.+..+.+.+ .+++||+.+||=... +| +..+ +..||.++.+||-...
T Consensus 267 ~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 267 IDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhc
Confidence 34555566654 347999999999853 23 3446 7789999999997653
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.14 Score=47.05 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCcEEEEe--------c---CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITKLPILVKG--------V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~--------v---~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
++.++++++.+++|++... + .+.++++.+.++|+|.|.+...-.... .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 5678888888899986321 1 235679999999999887754211000 001222344444442 3677
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 665 5789999999999999999774
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=46.66 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCcEEE---Eec--------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~v---K~v--------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++++++.+++|++. |.. .+.++++.+.++|+|.|.+.....+ ...+....+.+..+++.. +++
T Consensus 49 ~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~ 125 (219)
T cd04729 49 VEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCL 125 (219)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCe
Confidence 35667777777889863 222 1345889999999998877432111 001112234455555432 577
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+++ ++.+.+++.++..+|+|.+.+.
T Consensus 126 iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 126 LMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 766 6899999999999999998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.87 Score=43.69 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4678887655 69999999874 5543 2333 667899999887 7898887754433 66777999999999
Q ss_pred EEcHHHHHHHHh--------c-C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA--------E-G----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~--------~-G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... . + ..-.....+.+++.++..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 0 0 1113333455667777777777753
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.89 Score=43.63 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..=|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887655 57999999874 5543 2333 567899998887 7999999977666 67778999999999
Q ss_pred EEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1123334456667777777777754
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.062 Score=52.44 Aligned_cols=90 Identities=18% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017492 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (370)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (370)
+.+....+-.+.|.+.+.++++.++++|++.+.||- |-++.+.
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg------------------------------ 183 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKG------------------------------ 183 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcC------------------------------
Confidence 356667777788999999999999999999988762 2222210
Q ss_pred HHhhhcCCCCccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
...+..+|+.|+.|++..+ +||++-| |.+.+|+.++.+ .|+|||-+.
T Consensus 184 -----~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 184 -----LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 0133568999999999997 9999976 689999999988 999999764
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.47 Score=45.60 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCHHHHHHH-HHcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 017492 234 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a-~~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~-dv~kalalGAd~V 306 (370)
.+|++|+.. .+.|+|.+-++- ||.+... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.+++.+|..=|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 467887665 589999999974 5543221 134 4678999998764 79999988766555 8888999999999
Q ss_pred EEcHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+.... . ..-.....+.+++.+...|..+|..
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999876543210 0 1223344566777777888888764
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.088 Score=49.94 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.++.|+.+.. +.++++++.+.++|+|+++|+.
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4568999999999999975 5779999999999999999954
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.2 Score=50.11 Aligned_cols=215 Identities=17% Similarity=0.125 Sum_probs=107.8
Q ss_pred eeEcCeeecCceeecccccccccCCh-----hhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCC--h
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 135 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~-----~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d--~ 135 (370)
.+|.+.++++-|+.|||+-.....++ ..++.-+.-++-|+.+++++....+........+ ...|+-...+ .
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMP--SLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCC--CccccccCCHHHh
Confidence 56778999999999999632222222 2345555555668888886543222110000001 1112211112 3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...++++.+.+.|++++ +-+... .|+......... +..+....+ . . ...........+.+
T Consensus 83 ~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~~~~--~~~~~ps~~---~--~----------~~~~~~~p~~mt~~ 143 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGFLGE--DKPVAPSPI---P--N----------RWLPEITCRELTTE 143 (382)
T ss_pred HHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccccCC--CCccCCCCC---C--C----------CcCCCCCCCcCCHH
Confidence 456777788888898754 343321 121110000000 000000000 0 0 00000011345778
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc-CCcc---C----------CCCccc-------hHHHHHHHH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-HGAR---Q----------LDYVPA-------TIMALEEVV 274 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~-~gg~---~----------~~~~~~-------~~~~l~~i~ 274 (370)
+|+++.+.+ .+.|++|.++|.|+|.+.. |.|+ | -.+|-+ ..+.+..|+
T Consensus 144 eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr 212 (382)
T cd02931 144 EVETFVGKF-----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIK 212 (382)
T ss_pred HHHHHHHHH-----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHH
Confidence 888888764 3678999999999999964 4132 1 112322 335666677
Q ss_pred HHccCCCcEEE----------------------ecCCCCHH---HHHHHHH-hCCCEEEEcH
Q 017492 275 KATQGRIPVFL----------------------DGGVRRGT---DVFKALA-LGASGIFIGR 310 (370)
Q Consensus 275 ~~~~~~ipvi~----------------------~GGI~~~~---dv~kala-lGAd~V~igr 310 (370)
+.++.+.||.+ .||+ +.+ ++++.|. .|.|.+-+..
T Consensus 213 ~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 213 ARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred HhcCCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 66654545443 2233 334 4556665 7999998753
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.054 Score=50.49 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=68.7
Q ss_pred ceEEEEeecCCh----HHHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 124 IRFFQLYVYKDR----NVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 124 ~~~~Qly~~~d~----~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
..|+.|-.-.|. ....+.+++++.. |+..+-+..|.|+..+|..++.-.+-.|-
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl------------------- 151 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL------------------- 151 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 457766543332 2334566666666 99988677788887777766521111110
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +.+-.+++.++.+++..++||++-+ +.+++|+..+++.|+|++.|.
T Consensus 152 ----g~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 152 ----GAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred ----CcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 000111 1112247779999998899999865 689999999999999999884
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.044 Score=49.75 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.++.+-.+.+..+. |++ .+.+.++.+++++.|+..|-|-|..=..+..-..+ ...+.+-++.++-+++-+||.|
T Consensus 174 ~lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~t 248 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFT 248 (289)
T ss_pred HHHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCC
Confidence 34445555555543 432 35788999999999999988877533222222222 2333333445777888999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++|+.++-..|..+|.+|-.++..
T Consensus 249 pdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 249 PDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHHcCceEEEecHHHHhc
Confidence 999999999999999999999874
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.043 Score=50.97 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
..|+.|+++++.++ +||+.=+ +.+.+++...+++|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 9987654 689999999999999999885
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.027 Score=58.68 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=59.1
Q ss_pred HHHHHHHHcCccEEEEccCCcc--CCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 017492 237 EDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 303 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-----------~dv~kalalGA 303 (370)
+.|+...+.|+|-|.+-+--+. ....-.+.++.+.++.+.+ .+|+.+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 5588889999999998654321 1112234577888888877 7999999999998 55899999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|-|.+|+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997665
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.061 Score=50.92 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=66.8
Q ss_pred cHH-HHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH--ccCCCcEEEecC
Q 017492 213 SWK-DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 288 (370)
Q Consensus 213 ~~~-~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvi~~GG 288 (370)
+|+ .++..|+..+. +-+-=.+-+.+++..|+++|+|.|.+.|- +.+.+.++.+. .++++-+-+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 454 48888887643 32333468999999999999999999884 22445555554 445788899999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~ 312 (370)
|. .+.+..+..+|.|.+.+|.+.
T Consensus 243 It-~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 IT-LENIREYAETGVDVISVGALT 265 (280)
T ss_pred CC-HHHHHHHhhcCCCEEEeCccc
Confidence 94 588888888999999999754
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.025 Score=56.73 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=51.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++.+.++|+|.|.+....|. +....+.+.++++..+ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998653321 2345567778877653 45544 588999999999999999999877
|
|
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.052 Score=51.86 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=75.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~-~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++|..+++.|+..|++|..+...-....|.+-++..+..++ +.++-+++ +|-+|+.-|++-.+..|||+|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788899999999999765322122334555555555553 33565555 6789999999998899999985332
Q ss_pred HH--HHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 311 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 311 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+| +..+...| ++.+.++.+.+.++|...|..+|.+.+..-++.-+.-
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiFe 281 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIFE 281 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EE
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceeee
Confidence 22 11111222 3678899999999999999999999999887665543
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.063 Score=49.24 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+.+++.. ++-|....+.+.++++.+.++|+++++.-+. ..+.+..+.+. .+|++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~~---~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQEG---PIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHHc---CCCEe--CCCCC
Confidence 456789999877 4557777789999999999999999976321 11444444332 45554 47999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
+.++..++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999877
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.061 Score=49.12 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=58.6
Q ss_pred cHHHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.|+.+++..+ +.|.+..+.+.++++.+.++|+|+++..+ ...+.+. .+... .++++. |..
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~-~~~~~--~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIR-RAVAL--GMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHH-HHHHC--CCcEEc--ccC
Confidence 3457899998875 45666678999999999999999996522 1112222 22222 455554 399
Q ss_pred CHHHHHHHHHhCCCEEEE
Q 017492 291 RGTDVFKALALGASGIFI 308 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~i 308 (370)
|.+++.++..+|||.|.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999987
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=48.30 Aligned_cols=126 Identities=16% Similarity=0.260 Sum_probs=81.0
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.+++.|++.+++.+-. .|
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~------------------------------------------------~d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLD------------------------------------------------VD 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeEC------------------------------------------------CC
Confidence 544456677888888899999998864321 12
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++.+.+.. ++|+.+=-- .++.. .+.+.+.|++.|-.|+... .....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhcCCCE-E
Confidence 234666677777766 577766432 34444 5678999999997754211 12233455666666544444 8
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++.|||+. +++.+.+..|+..+=..
T Consensus 174 m~GgGV~~-~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVRL-SNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCCH-HHHHHHHHcCCCEEeeC
Confidence 88888865 77877778998877543
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=42.75 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=104.1
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ |++.+.+.+|.. +..+ -+.++++.. .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46677887544444555556778888888876544 233456666532 2222 245566542 35677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|+++|++++.+. .|... +. ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~--pP~~~------------~~-------------------------------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV--TPYYN------------KP-------------------------------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------CC-------------------------------CHHHHHHHH
Confidence 7788899999999999874 23210 00 001123445
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. .+++..+++.+.+ +-+|.-+. .....+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEAT----------GDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEE-C--
Confidence 6666667889887643 4567777765432 23333211 123344445444433444443 3
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
....++..+.+|+++++.|...+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~ 209 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANV 209 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhh
Confidence 22346677899999999887543
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.72 Score=43.42 Aligned_cols=94 Identities=27% Similarity=0.414 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc-cc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~ipv 283 (370)
+++.++++-+ .++||++|-. .|.++ |+..+..|-..|++.-.|=|..+.. +- .+..++-+++.. .+||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 4555666543 5899999965 45555 6777889999999988887765543 22 334667666654 7999
Q ss_pred EEec----CCCCHHH--HHHHHHhCCCEEEEc
Q 017492 284 FLDG----GVRRGTD--VFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~G----GI~~~~d--v~kalalGAd~V~ig 309 (370)
|+|= |=|+... +..|++.|||++|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9974 3333222 234677899999985
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.082 Score=51.98 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHH--cCccEEEEccCCcc----CCCC------ccchHHHHHHHHHHccCCCcEEE-ecCCCCHHHHHH----HHHh
Q 017492 239 ARIAVQ--AGAAGIIVSNHGAR----QLDY------VPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 301 (370)
Q Consensus 239 a~~a~~--aG~d~I~vs~~gg~----~~~~------~~~~~~~l~~i~~~~~~~ipvi~-~GGI~~~~dv~k----alal 301 (370)
++.+.+ .|+|.+.+--.+.- ..+. .....+.+.++.+.. .+|++. +||. +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 456664 99999998432110 0011 111123455555554 677666 7777 6566555 5557
Q ss_pred CC--CEEEEcHHHHH
Q 017492 302 GA--SGIFIGRPVVY 314 (370)
Q Consensus 302 GA--d~V~igr~~l~ 314 (370)
|| ++|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999998754
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.4 Score=42.36 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=105.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~~-------~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++=..+.+-..+.|+...+ |++.+.+.+|..+ ... -+.+.++-. .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 46778887544434444445677777778875433 2344567666432 122 244555432 34556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|++.|++++.+. .|.. + +. +.+-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~--pP~y----------~--~~-------------------------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI--VPYY----------N--KP-------------------------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc--CccC----------C--CC-------------------------------CHHHHHHHH
Confidence 6778888999999999874 2321 0 00 001123456
Q ss_pred HHHHHhc-CCcEEEEec-------CCHHHHHHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 218 ~~ir~~~-~~Pv~vK~v-------~~~~~a~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
+.|.+.+ ++||++=.+ ++++...++.+ -.+-+|.-+. ..+..+.++.+..+.+..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 6777778 799987654 45677777763 3455555432 123444455444433454433 3
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~ 312 (370)
....++.++.+||++++.|..-
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n 209 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATAN 209 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHh
Confidence 2255667889999999988754
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.057 Score=49.87 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred cHHHHHHHHHhc-----CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 213 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 213 ~~~~i~~ir~~~-----~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
..+.|+.+++.+ ++-|.+..+++.++++.+.++|+++|+--+ ...+.+..+.+ . ++|++ =
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--P 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--P 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--C
Confidence 445566665433 255777778999999999999999995311 12233333332 2 45554 5
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q 017492 288 GVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~i 308 (370)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 899999999999999997643
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.051 Score=52.77 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=59.6
Q ss_pred CCCceEEEEeecCC--hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccch
Q 017492 121 GPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (370)
Q Consensus 121 ~~~~~~~Qly~~~d--~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (370)
.+.|..+.+-.+.+ .+.+.+++++++++|+++|.||.-++.- .
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~-------------------------- 165 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------R-------------------------- 165 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------C--------------------------
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------c--------------------------
Confidence 33456666655444 6778899999999999999988533210 0
Q ss_pred hhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHc-CccEEEEc
Q 017492 199 GLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~a-G~d~I~vs 253 (370)
.....+|+.++++++.+++||+.=| +.+.++++...+. |+|+|.++
T Consensus 166 ---------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 ---------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ---------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1124589999999999999999876 6899999988876 99999884
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.077 Score=49.31 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+.-.+.|+..+.+----| ...+++-..+.+.+|.+.+ ++||=..||||+-+++.+.+.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdg-A~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDG-AKAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccc-cccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3567888889999987642111 0123455678899999887 899999999999999999999999999999943
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.2 Score=54.63 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred cCCHHHHHHHH----Hc---CccEEEEccCCccC-CCCc--cchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHh
Q 017492 233 VLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 233 v~~~~~a~~a~----~a---G~d~I~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalal 301 (370)
+-+.+++..+. .. |+|+|.++--..+. .... +..++.+.++++.+. ..+||++-||| +.+++.++++.
T Consensus 108 ~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~ 186 (755)
T PRK09517 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT 186 (755)
T ss_pred CCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc
Confidence 35667665432 23 59999987433332 1121 235677888877662 13999999999 77999999999
Q ss_pred CCCEEEEcHHHH
Q 017492 302 GASGIFIGRPVV 313 (370)
Q Consensus 302 GAd~V~igr~~l 313 (370)
||++|.+-+.++
T Consensus 187 Ga~giAvisai~ 198 (755)
T PRK09517 187 GIDGLCVVSAIM 198 (755)
T ss_pred CCCEEEEehHhh
Confidence 999999999986
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.25 Score=45.12 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec-CCH---HHHHHHHHcCccEEEEccC-----CccCCCCccchHHHHHHHHHHccC
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV-LTA---EDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~---~~a~~a~~aG~d~I~vs~~-----gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
+.+.+.+.++++++..++||+ |-+ ... .........-+|.+.+... ||+ +..-.|..+... ..
T Consensus 82 HG~e~~~~~~~l~~~~~~~v~-kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~ 153 (208)
T COG0135 82 HGDEDPEYIDQLKEELGVPVI-KAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RL 153 (208)
T ss_pred CCCCCHHHHHHHHhhcCCceE-EEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----cc
Confidence 445678899999998888987 543 322 2344455667899999874 443 334466776654 12
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCC-CEEEEcHHH
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGA-SGIFIGRPV 312 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGA-d~V~igr~~ 312 (370)
..|++..||| +++++.+|++++. .+|=+.|.+
T Consensus 154 ~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 154 SKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred cCCEEEECCC-CHHHHHHHHHhcCCceEEecccc
Confidence 6789999999 6799999999986 888887743
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.055 Score=55.96 Aligned_cols=252 Identities=18% Similarity=0.235 Sum_probs=133.9
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- ...+++|++|.+- ...++.||+-|||...+ |..||.+.+++|...+++ .++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~--~~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIH--NNCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEec--CCCCHHHHHH
Confidence 699999999754 2446788888775 35788999999997664 678999999999998885 3577776543
Q ss_pred cCC------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-----CCCcchhHHhhhhcCCCCcccccccccc-
Q 017492 120 TGP------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQGL- 187 (370)
Q Consensus 120 ~~~------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~d~~~~~~~p~~~~~~~~~~~- 187 (370)
... .........-.......+.++...+.++..+.|+-+- .+.-...+|++..- ........+-..
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~~ 168 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTPR 168 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCCc
Confidence 211 1001111111122334445556667787777664321 01001223433100 000000000000
Q ss_pred -ccCcccc-ccchhhHHHhhhc-------CC--CC----ccHHHHHHHHHh------cCCcEEEEec--CC---HHHHHH
Q 017492 188 -DLGKMDE-ANDSGLAAYVAGQ-------ID--RS----LSWKDVKWLQTI------TKLPILVKGV--LT---AEDARI 241 (370)
Q Consensus 188 -~~~~~~~-~~~~~~~~~~~~~-------~d--~~----~~~~~i~~ir~~------~~~Pv~vK~v--~~---~~~a~~ 241 (370)
....... ....-....+... .| .. .+.+++...... -...+.|... .+ .+.++.
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~ 248 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAA 248 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000000 0000000000000 00 00 122222222110 0122333222 22 356888
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++|+|.|.+....|++ ...++.+.++++..+ +++|++ |.+.|.+++..++.+|||++-+|
T Consensus 249 l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 999999999997533321 224678888887653 688887 89999999999999999999754
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.61 Score=45.78 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCC-Cccc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~-~~~~--~~~~l~~i~~~~~~~ipv 283 (370)
+...++++- .+++||++|..+ +.++ ++.+...|-+-+.+.-.|.+... .... .+..++.+++.. .+||
T Consensus 189 N~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPV 265 (335)
T PRK08673 189 NFDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPV 265 (335)
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCE
Confidence 344566654 469999999753 5666 34555678877777655655442 2222 334566666554 6899
Q ss_pred EEecCCCCH------HHHHHHHHhCCCEEEEcHHHHH--HHHhcCHHH-HHHHHHHHHHHHHHHHHHcC
Q 017492 284 FLDGGVRRG------TDVFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 284 i~~GGI~~~------~dv~kalalGAd~V~igr~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 343 (370)
+++-.=..| .-...|+++|||++++-.-+-- ++ +.|... --+-++.|.++++..-...|
T Consensus 266 i~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 266 IVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 887544444 3456688899999999874321 11 222211 01234555566665555544
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.05 Score=55.60 Aligned_cols=252 Identities=19% Similarity=0.239 Sum_probs=131.3
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- ...+++|++|.+- +.+++.||+-|||...+ |..++.+.++.|-..++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 699999999754 2346789999886 68899999999997654 5567777777776556643 355553321
Q ss_pred ----cC--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-----CCCcchhHHhhhhcCCCCccccccccc-c
Q 017492 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQG-L 187 (370)
Q Consensus 120 ----~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~d~~~~~~~p~~~~~~~~~~-~ 187 (370)
.. .....-++..-.......+.++...+.++..+.|.=+. +..--..+|+..... + ......+.. .
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~-~~~V~dvm~~~ 152 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-K-GKPVSEVMTRE 152 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-C-CCCHHHhhCCC
Confidence 11 11111111111223344456666677788777664221 000011233321100 0 000000000 0
Q ss_pred ccCcccc-ccchhhHHHhhhc-------CC--C----CccHHHHHHHHHh------cCCcEEEEec--C---CHHHHHHH
Q 017492 188 DLGKMDE-ANDSGLAAYVAGQ-------ID--R----SLSWKDVKWLQTI------TKLPILVKGV--L---TAEDARIA 242 (370)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~-------~d--~----~~~~~~i~~ir~~------~~~Pv~vK~v--~---~~~~a~~a 242 (370)
....... ....-+...+... .| . -.+.+++.+..+. -+.-++|.+. . +.+.++.+
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 0000000 0000000000000 00 0 0123332222111 0122333322 1 24668889
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.++|+|.|.|....|+ ....++.+.++++.. .++||++ |++-+.+++..++.+|||+|.+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 9999999999763332 134556778887764 3789988 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.16 Score=47.75 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=59.3
Q ss_pred HHHHHHhcCCcEEEEec-----------CCH----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 217 VKWLQTITKLPILVKGV-----------LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v-----------~~~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
+.+-...+++|+++-.. .++ .-++.+.+.|+|.|.+.-.| ..+...++.+.+ .+
T Consensus 135 v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~v 203 (265)
T COG1830 135 VVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GV 203 (265)
T ss_pred HHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CC
Confidence 44444557899887432 112 22567899999999985322 226677777777 49
Q ss_pred cEEEecCCCC-HH-HH----HHHHHhCCCEEEEcHHHHH
Q 017492 282 PVFLDGGVRR-GT-DV----FKALALGASGIFIGRPVVY 314 (370)
Q Consensus 282 pvi~~GGI~~-~~-dv----~kalalGAd~V~igr~~l~ 314 (370)
||+.+||=.+ .+ ++ ..++..||.++.+||-++.
T Consensus 204 pVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 204 PVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999999987 22 22 2356689999999997653
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.1 Score=40.85 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=102.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-..+ ++ +.+.+.+|.. +... -+.++++- ..+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35566776444334444445677777778866544 22 2345665532 2222 24555543 234566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
+.++.+.|++.|++++.+. .|... + .+.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVV--TPYYN------------K-------------------------------PTQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEc--CCcCC------------C-------------------------------CCHHHHHHHH
Confidence 7788889999999999885 23210 0 0001123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. .+++..+++.+.. +-+|.-+. .....+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~----------~d~~~~~~l~~~~~~~~~v~~-G-- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEAT----------GNLERISEIKAIAPDDFVVLS-G-- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-C--
Confidence 6677777899887653 4667777777643 22222211 123445555555444555444 2
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
...-.+..+.+||++.+.|...+
T Consensus 184 -~d~~~~~~~~~G~~G~i~~~~~~ 206 (285)
T TIGR00674 184 -DDALTLPMMALGGKGVISVTANV 206 (285)
T ss_pred -chHHHHHHHHcCCCEEEehHHHh
Confidence 22456678899999999887654
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.065 Score=50.58 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=90.7
Q ss_pred cCeeecCceeeccc---c----cccccCChhhHHHHHHHHHc--CCceeecCCCCC----CHHHHhccC-C-CceEEEEe
Q 017492 66 LGFKISMPIMIAPT---A----MQKMAHPEGEYATARAASAA--GTIMTLSSWSTS----SVEEVASTG-P-GIRFFQLY 130 (370)
Q Consensus 66 ~g~~l~~Pi~iapm---~----~~~~~~~~~e~~la~aa~~~--G~~~~~s~~~~~----~~eei~~~~-~-~~~~~Qly 130 (370)
+|.++|-|+.=.|+ + ...-...+.-..+.+..++. ++|+++=++.+. .+|+..+.. . +...+ |-
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 58888888877775 1 11111223345677777754 466776444332 344422111 1 11121 22
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
+.-..+...++.+.+++.|.+-|.+. +|... +|...+...- .++.. +.+. ...-|. ....
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a---~GFiY--~vs~-------~GvTG~-----~~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAA---SGFIY--YVSR-------MGVTGA-----RNPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhC---CCcEE--EEec-------ccccCC-----Cccc
Confidence 33345666677777888888877653 45433 4444433211 01100 0000 000000 0001
Q ss_pred CCccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 210 RSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.....+.++++|+.+++|+.+. |+.++++++.+.++ +|+++|+
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1124567999999999999998 47899999999999 9999994
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.06 Score=55.76 Aligned_cols=253 Identities=17% Similarity=0.180 Sum_probs=131.5
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|..- ...+++|++|.+- ...+..||+-|||...+ +-.+|.+.++.|...++.. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 4799999999754 2346788887664 35677899999997664 6689999999997766763 45565543
Q ss_pred cc----C--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC-----CCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 119 ST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-----TPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 119 ~~----~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd-----~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
+. . .....-....-.....+.+.++...+.++..+.|+=+ .++.--..+|++..-. +. .....+-..
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~~-~~V~eIMt~ 171 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-RE-TKLSEVMTS 171 (505)
T ss_pred HHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-cC-CcHHHHhcc
Confidence 21 1 1000001111122333444556666778877766422 1110012233321000 00 000000000
Q ss_pred c--cCcccc-ccchhhHHHhhh-------cCC--C----CccHHHHHHHHHhc---------CCcEEEEe-c-C---CHH
Q 017492 188 D--LGKMDE-ANDSGLAAYVAG-------QID--R----SLSWKDVKWLQTIT---------KLPILVKG-V-L---TAE 237 (370)
Q Consensus 188 ~--~~~~~~-~~~~~~~~~~~~-------~~d--~----~~~~~~i~~ir~~~---------~~Pv~vK~-v-~---~~~ 237 (370)
. ...... ....-+.+.+.. ..| . -.+.+++.+..+.- ...+.+.- + . ..+
T Consensus 172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~ 251 (505)
T PLN02274 172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKE 251 (505)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHH
Confidence 0 000000 000000000000 000 0 11334443333321 11233332 1 1 236
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
-++.+.++|+|.|.+....|. ....++.+.++++..+ +++|++ |+|.|.+++..++.+|||+|.+|
T Consensus 252 r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 688999999999999764332 2345678888887652 455554 88999999999999999999775
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.7 Score=42.71 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~------------- 292 (370)
.++++|+.-+ +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ +++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4778887655 68999999874 5543211012 3567889998876 35999988876554
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 293 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 293 ---------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
+++.+++.+|..-|-+++-+..+... .. ..-.....+.+++.+...|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976544211 00 12234445667788888888888553
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.51 E-value=2.3 Score=40.30 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=106.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ + ++.+.+.+|.. +... -+.++++- ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5566777544445555556788888888876544 2 23445666532 2222 34455553 2345567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++++.++++|++++.+. .|... + ...+-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYYN------------K-------------------------------PSQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcCC------------C-------------------------------CCHHHHHHHHH
Confidence 788889999999999874 23210 0 00011334566
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.+.+.+++|+++-.. .+++...++.+. .+-+|.-+. .....+.++.+..++++.|+. | -
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-~- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-G-D- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c-c-
Confidence 677778899987643 567777777752 234443321 234455555555544554443 3 2
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
...+...+.+|+++.+.|..-
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 184 -DDLLLPALALGADGAISGAAN 204 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHh
Confidence 567888899999999999743
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.12 Score=51.00 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+-+..+.++|+|.|++...-|+ ..-..+.+.++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46688899999999999753222 1234567788877764 788886 88999999988888999999888
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.057 Score=49.39 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+...++|+++|.+....+. . ....+.+..+++.+ ++||+.-|+|++..++..++.+|||+|.++.+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 36688999999999988542111 0 12345666676665 799999999999999999999999999988754
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.75 Score=44.51 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=86.5
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
..+++. ..+.+...+.++++.+.|++++-+.++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~--------------------------------------------- 159 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG--------------------------------------------- 159 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------------------------------------
Confidence 334554 3566767777777888899998876531
Q ss_pred hhcCCCCccHHHHHHHHHhcC-CcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc
Q 017492 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (370)
+++...+.++.+|+.++ .++.++.- .+.++| +.+.+.+++.|.= ...+..++.+.++++..
T Consensus 160 ----~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 160 ----DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS 227 (316)
T ss_pred ----ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC
Confidence 11124567888888774 67777753 344444 4455677777631 01133567788887765
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++||++++.+.+..++.+++..| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 888888643
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.7 Score=40.35 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=105.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.||.. +... -+.++++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46667777544434445556788888888866544 32 3456666532 2222 35677763 34667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|++.|++++.+. .|.. . +. ...-..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y-----------~-~~-------------------------------s~~~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYL-----------I-NG-------------------------------EQEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------C-CC-------------------------------CHHHHHHHH
Confidence 7778888999999999874 2321 0 00 000123345
Q ss_pred HHHHHhcCCcEEEEe----cCCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~----v~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+.+.+++||++=. -++++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+...+. .
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~G~~~-~ 191 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLGGMPT-A 191 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEeCCCc-c
Confidence 666667789988653 256777777765 2 455555432 2344555555554444444432111 1
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q 017492 292 GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~ 312 (370)
...++..+.+||++++.|..-
T Consensus 192 d~~~~~~~~~Ga~G~is~~~n 212 (296)
T TIGR03249 192 EVTAPAYLPLGVTSYSSAIFN 212 (296)
T ss_pred hhhHHHHHhCCCCEEEecHHH
Confidence 244567788999999988753
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.4 Score=40.33 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=104.3
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ ++ +.+.+.+|.. +... -+.++++- ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35667777544444555556777888888875443 22 2345666532 2222 24555553 235667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|+++|++++.+. .|.. + +. ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~--~P~~----------~--~~-------------------------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVV--TPYY----------N--KP-------------------------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc--cccc----------C--CC-------------------------------CHHHHHHHH
Confidence 7888899999999999874 2321 0 00 001123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. ++++...++.+. .+-+|.-+. .....+.++.+..++++.|+. |
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G-- 185 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVLS-G-- 185 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEe-C--
Confidence 6666667889886543 566777766653 233443321 123344455555544554443 3
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
....+...+.+|+++++.|..-+
T Consensus 186 -~d~~~~~~~~~G~~G~~s~~~n~ 208 (284)
T cd00950 186 -DDALTLPFLALGGVGVISVAANV 208 (284)
T ss_pred -ChHhHHHHHHCCCCEEEehHHHh
Confidence 22456677889999999888643
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.36 Score=45.68 Aligned_cols=41 Identities=32% Similarity=0.322 Sum_probs=34.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++.+|+.++.||++.. +.++++++.+.+. +|+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34579999998899999975 5799999999986 99999954
|
|
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.1 Score=40.37 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc-----CCccCC-CC-----ccchHHHHHHHHHHc---cCCC
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DY-----VPATIMALEEVVKAT---QGRI 281 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~-----~gg~~~-~~-----~~~~~~~l~~i~~~~---~~~i 281 (370)
.++.+.+ -++++-+=.+.+.+.+..+.++|++.|...- +|..++ +. +-+.+..+.++.+.. +.+.
T Consensus 131 A~~~L~~-~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 131 AIKDLIA-AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred HHHHHHH-CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 4455544 3889988889999999999999999998742 122111 01 114455555555443 3356
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
.|++.+ +++..++.+.+ |+|.|-+.-..+..+
T Consensus 210 kiL~AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 210 RVLWAS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred eEEEEe-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 776654 99999997655 999999998877654
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.39 Score=44.20 Aligned_cols=122 Identities=18% Similarity=0.302 Sum_probs=80.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+-++.++++|++.+++.+-. .|
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt------------------------------------------------~d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALT------------------------------------------------AD 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeec------------------------------------------------CC
Confidence 444456788888999999999998864311 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. +++|.+-.- .++.. ...+++.|+.-|-.| ||. ....-....|.++.+...+++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 345666777777765 677766542 44544 578999999998774 443 22233344555555555578889
Q ss_pred EEecCCCCHHHHHHH-HHhCCC
Q 017492 284 FLDGGVRRGTDVFKA-LALGAS 304 (370)
Q Consensus 284 i~~GGI~~~~dv~ka-lalGAd 304 (370)
++.|||+. +.+... ..+|+.
T Consensus 175 m~GaGV~~-~N~~~l~~~tg~~ 195 (241)
T COG3142 175 MAGAGVRA-ENIAELVLLTGVT 195 (241)
T ss_pred EeCCCCCH-HHHHHHHHhcCch
Confidence 99889865 667665 457764
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.11 Score=47.94 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...++.|++..++||+|- |+-++.+|..++|.|+|+|-+
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 5667899999999999985 578999999999999999977
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.1 Score=48.19 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala--lGAd~V~igr~~l 313 (370)
.+.|+...+.|+|.+.+..--+. .+.+...+.+.++.+. +|+.+.||||+.+|+.+++. .||+-|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35677788999999987543221 1345567788888774 58999999999999988865 2699999999754
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.32 Score=46.41 Aligned_cols=155 Identities=25% Similarity=0.275 Sum_probs=87.0
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC----------C---CHHH----HhccCCCceEEEEeecC
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------S---SVEE----VASTGPGIRFFQLYVYK 133 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~----------~---~~ee----i~~~~~~~~~~Qly~~~ 133 (370)
..|++++ +.+. .++.-...++.+.+.|+.++-=+++. . .+.+ +.+...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576654 3332 22222467888888887644311110 0 1222 23332345677765555
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.++++.++++|++++.++-.... +..+... ..|. .. ....+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~---~~------------~~~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPG---PK------------RGTGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--Cccc---cC------------CCCCc----cCcHHHHHHH
Confidence 6667888999999999999988632211 0000000 0000 00 00000 0000011236
Q ss_pred HHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 214 WKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.++++++.+ ++||+.-+ +.+.+++..++.+|+|+|.++
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 89987654 688999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.7 Score=40.27 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=115.7
Q ss_pred ceeecccccccccCChhhH----HHHHHHHHcCCceeecCCCCCCHHHHhccC-CC-ce-----E-----EEEe--ecCC
Q 017492 73 PIMIAPTAMQKMAHPEGEY----ATARAASAAGTIMTLSSWSTSSVEEVASTG-PG-IR-----F-----FQLY--VYKD 134 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~----~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~-~~-----~-----~Qly--~~~d 134 (370)
|++||=+|.. | +|++ .+.++|+++|+..+= +-+...+++.... +. .+ | +.+| ..-+
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVK--fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVK--FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELS 74 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEE--eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCC
Confidence 6788887654 3 2443 688899999976432 1123445443211 11 11 1 1111 0123
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC-cc
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 213 (370)
.+....+.+.+++.|...+.=-+| .+.-|+-..+.+|. +. + ...+ ..
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~K-----------------------I---aS~~~~n 122 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-FK-----------------------I---PSGEITN 122 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-EE-----------------------E---CcccccC
Confidence 456677777888888876642222 12222222222110 00 0 0111 25
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHHHH----HHHHcCcc---EEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAEDAR----IAVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~a~----~a~~aG~d---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+..|+.+.+ +++||+++.. .+.++.. .+.+.|.+ .+.+.-...+.-......+..++.+++.. .+||..
T Consensus 123 ~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~ 199 (329)
T TIGR03569 123 APLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGY 199 (329)
T ss_pred HHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEE
Confidence 677888766 5999999965 5665543 34457875 33331111110001122445666666665 689988
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v----~~~l~~l~~el~~~m~~~G~~ 345 (370)
++=-..-.-...|+++||+ +|=+-|-..-...|.+.- ..-+..|.++++.+-..+|..
T Consensus 200 SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 200 SDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred CCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7522112334557789999 444433222122232210 123566777778777777753
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.14 Score=48.06 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=55.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+-|+...++||++|.|-.-+. +-...++.|..+++.+ ++||+.-..|-+..++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 457888999999998865321 1112567888888877 8999999999999999999999999997655443
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.54 Score=42.46 Aligned_cols=101 Identities=27% Similarity=0.368 Sum_probs=67.0
Q ss_pred cHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C--
Q 017492 213 SWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~-- 259 (370)
.++++++.|.+ +.+||++-+..++ ...+.+.++|+.++++-. ||-. .
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtd 161 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTD 161 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChH
Confidence 56778888887 6899998886443 346778889999988742 1110 0
Q ss_pred ---------CC------------CccchH-H----HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ---------LD------------YVPATI-M----ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ---------~~------------~~~~~~-~----~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
-| +...+. + .+.+++++. ++.|+-+.-||.+++++-..=.. ||+|.+|+.++
T Consensus 162 eRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 162 ERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 00 111111 2 344444443 47899999999999998554333 99999999987
Q ss_pred HH
Q 017492 314 YS 315 (370)
Q Consensus 314 ~~ 315 (370)
.-
T Consensus 240 ~l 241 (268)
T KOG4175|consen 240 KL 241 (268)
T ss_pred HH
Confidence 64
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.16 Score=48.62 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ |-.+|||+|++-.|+++
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~ 108 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 108 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccC
Confidence 45678899999997764421111111 22345555666667899987666555566655 34689999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
. ..++++.++++.+.+
T Consensus 109 ~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 109 K---TSQEGLIKHFETVLD 124 (280)
T ss_pred C---CCHHHHHHHHHHHHh
Confidence 3 245666555555443
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.53 Score=46.00 Aligned_cols=187 Identities=18% Similarity=0.138 Sum_probs=101.8
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceee---cCCCC------CCH----HH----HhccCCCceEEEEeecC
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL---SSWST------SSV----EE----VASTGPGIRFFQLYVYK 133 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~---s~~~~------~~~----ee----i~~~~~~~~~~Qly~~~ 133 (370)
..|++++= .+. .++.-..+++.+.++|+.+.- |.... ..+ .+ +.+...-|.++.|-+
T Consensus 99 ~~pvi~si-~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASL-NGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEe-CCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 56877663 332 233335788888888865442 21100 011 12 223333577877643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+...+.+.++.++++|+++++++--.+.. .-|+.+ .. + . .... ++........
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~-~~-~---~------------~~~g-------lSG~~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLET-LE-V---V------------PNLL-------LSSPAEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Cccccc-cc-e---e------------cCCC-------cCCccchhHH
Confidence 33356778888999999999886322111 001000 00 0 0 0000 1100111246
Q ss_pred HHHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
++.+.++++..++||+. .++.+.+||.+.+.+|||.|.+... -+..|+..+ ....++.+++ -.-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l-------~~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWM-------EEHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHH-------HHcCCCC
Confidence 77888888888999874 5689999999999999999998531 011233322 2344444433 2356778
Q ss_pred HHHHHHHHH
Q 017492 292 GTDVFKALA 300 (370)
Q Consensus 292 ~~dv~kala 300 (370)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 777765433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.33 Score=47.60 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCcEEEEec-CCHH----HHHHHHHcCccEEEEcc---CCccCCCCcc---chHHHHHHHHHHccCCCcE
Q 017492 215 KDVKWLQTITKLPILVKGV-LTAE----DARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v-~~~~----~a~~a~~aG~d~I~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~~ipv 283 (370)
+.++.+++..++||+++.. .+.+ .++.+.++|+|+|.+.- ++.....+.. ..++.+..+++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566676667899999985 3443 36777889999999831 1111111111 1234556666554 6899
Q ss_pred EEe--cCCCCHHHHHHHHH-hCCCEEEEcH
Q 017492 284 FLD--GGVRRGTDVFKALA-LGASGIFIGR 310 (370)
Q Consensus 284 i~~--GGI~~~~dv~kala-lGAd~V~igr 310 (370)
++- +++.+..++++++. .|+|+|.+..
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 876 45556678888765 8999987743
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.98 E-value=4.1 Score=40.15 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=76.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCC---------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 290 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~--------------- 290 (370)
.++++|+.-+ +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ .++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v-~~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL-PNTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887655 68999999874 5543211112 3567899998877 258988877543
Q ss_pred -------CHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 291 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 291 -------~~~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
..+++.|++.+|..-|-+++-+..+... .. ..-.....+.+++.++..|..+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3477899999999999999977554221 00 11233445667888888888888653
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.93 Score=40.59 Aligned_cols=88 Identities=25% Similarity=0.210 Sum_probs=59.5
Q ss_pred cHHHHHHHHHh-cCCcEEEEe-cCCH--HHHHHHHHcCccEEEEccCCccCCCCccchHH-HHHHHHHHccCCCcEEEe-
Q 017492 213 SWKDVKWLQTI-TKLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD- 286 (370)
Q Consensus 213 ~~~~i~~ir~~-~~~Pv~vK~-v~~~--~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvi~~- 286 (370)
..+.++++++. .+.|+++=+ +.++ ..++.+.++|+|+|.+.... .+.... .+..+++ . .++++++
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~~-~--g~~~~v~~ 110 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAKK-Y--GKEVQVDL 110 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHHH-c--CCeEEEEE
Confidence 35678888887 478887732 2233 35788999999999984321 111122 2333332 2 5777775
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEc
Q 017492 287 GGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~ig 309 (370)
=+..++.++.+++..|+|.|.++
T Consensus 111 ~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 111 IGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred eCCCCHHHHHHHHHCCCCEEEEc
Confidence 78999999999888999999985
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.36 Score=46.91 Aligned_cols=87 Identities=9% Similarity=0.269 Sum_probs=60.7
Q ss_pred ceEEEEeec-CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 124 IRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 124 ~~~~Qly~~-~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
|.++-+-.+ .+.+...+.++.++++|+++|.|+-.+.. ++|
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y----------------------------- 176 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY----------------------------- 176 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC-----------------------------
Confidence 566665443 23344678888889999999888632110 000
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHH-HcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~-~aG~d~I~vs 253 (370)
.-+...|+.++++++.+++||+.=| +.+++++..++ +.|+|+|.++
T Consensus 177 -----~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 -----RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred -----CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 0112478999999999999988765 68999999877 5899999884
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.1 Score=39.93 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|..+-.-.+.+...+.+.+++..++|+.++.|. |... |++-. .+. ..+...
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~--------------pk~cg--~~~-----------~~~~~~ 130 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLG--------------LKKNS--LFG-----------NDVAQP 130 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCC--------------Ccccc--ccC-----------CCCccc
Confidence 3444444444677788888999999999888774 3211 11000 000 000000
Q ss_pred HhhhcCCCCccHHHHHHHHHh-c--CCcEEEEe-----cCCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHH
Q 017492 203 YVAGQIDRSLSWKDVKWLQTI-T--KLPILVKG-----VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 270 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~-~--~~Pv~vK~-----v~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l 270 (370)
.+ +.+.-.+.|+..++. . +++|+... ....++ ++...++|||+|.+- + ++.+.+.+
T Consensus 131 l~----s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~------~~~~~~ei 198 (285)
T TIGR02320 131 QA----SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH--S------RKKDPDEI 198 (285)
T ss_pred cc----CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec--C------CCCCHHHH
Confidence 00 011122345555443 2 46676662 123333 677889999999983 2 12455666
Q ss_pred HHHHHHccC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 271 EEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 271 ~~i~~~~~~---~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.++.+.++. .+|+++..+-.-...+...-++|.+.|..|..++++
T Consensus 199 ~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 199 LEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 666666532 568876543111123445556899999999887764
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.25 Score=48.73 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=65.8
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+..+.+.+.++++.++++|++++.++-..+.. . ++ .-+. . .+ ..+..++..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~----~~~~-~--~~---------~~gg~SG~~- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GL----KGLP-N--AD---------EAGGLSGRP- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-cc----cccc-c--CC---------CCCCcccHH-
Confidence 4678887655455567788899999999999887332110 0 00 0000 0 00 000000100
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEE-EEecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.....|+.++++++.+ ++||+ +.++.+.+++...+.+|||.|.++
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 1123688899999988 78987 566899999999999999999774
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.41 Score=45.20 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.++.||.+.+ +.++++++.+.++|+|+++|+.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 56789999999999999976 5679999999999999999853
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=48.35 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
..|+.|+++++.++ +||+.-| |.++++|+..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9999876 589999998877 579999884
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.18 Score=48.55 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCc-cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-. .--.+.+..+++.+.+++||++.=|-.+-.|.++ |-++|||+|++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 3556789999999966533211111 1122345556666667899987666556565543 4558999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 355555555555443
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=53.46 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-++.+.++|+|.|+|.+.-|. .....+.+..+++..+..++ +..|-|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 4578899999999999643221 12235677888776643344 44588999999999999999998774
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.37 Score=44.47 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...|+-|++..++||+|- |+-++.+|..++|.|+|+|-+
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 5678899999999999995 678999999999999999976
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.78 E-value=4 Score=39.08 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++...+.||.. +... -+.+.++- . +-+..
T Consensus 6 ~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~ 83 (289)
T cd00951 6 SFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATA 83 (289)
T ss_pred EEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHH
Confidence 5566777544434444455788888888876543 2 23456666532 2222 35566664 3 66777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.+++++|+++|++++.+. .|.. . + .+.+-..+..+
T Consensus 84 i~~a~~a~~~Gad~v~~~--pP~y-----------~-~-------------------------------~~~~~i~~~f~ 118 (289)
T cd00951 84 IAYAQAAEKAGADGILLL--PPYL-----------T-E-------------------------------APQEGLYAHVE 118 (289)
T ss_pred HHHHHHHHHhCCCEEEEC--CCCC-----------C-C-------------------------------CCHHHHHHHHH
Confidence 788999999999999873 2321 0 0 00001233456
Q ss_pred HHHHhcCCcEEEEec----CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 219 WLQTITKLPILVKGV----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v----~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.+.+.+++||++=.. .+++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+ .|-.+.
T Consensus 119 ~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds~----------~d~~~~~~~~~~~~~~~~v~--~G~~~~ 186 (289)
T cd00951 119 AVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDGV----------GDIELMRRIVAKLGDRLLYL--GGLPTA 186 (289)
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE--eCCCcc
Confidence 666777899887642 56777777766 3 333443321 13444555555544344333 333322
Q ss_pred HH-HHHHHHhCCCEEEEcHHHH
Q 017492 293 TD-VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~d-v~kalalGAd~V~igr~~l 313 (370)
++ +..++.+||++++.|.+-+
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~ 208 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNF 208 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhh
Confidence 33 5778899999998886543
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=4.6 Score=39.81 Aligned_cols=112 Identities=14% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~------------- 292 (370)
.++++|..-. +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ .++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-~~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-PNTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887665 57999999874 5543211012 3467899998877 25999988876554
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 293 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 293 ---------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++-++..|..+|...
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543221 00 11233344567777888888888654
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.2 Score=47.40 Aligned_cols=40 Identities=38% Similarity=0.544 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.+++||.+. |+.++++++.+. .|+|+++|+.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 456999999999999998 478999999998 9999999953
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.3 Score=39.19 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=108.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~~-------~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ + +..+.|.||-.+ ... -|.+.+.- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56777887643334555555777777888876444 2 234567766432 222 24566654 344566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|.. .. .+..-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-----------------~k--------------------------~~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-----------------NK--------------------------PSQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-----------------cC--------------------------CChHHHHHHH
Confidence 6788999999999999874 3332 00 0011134557
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+++.+.+++|+++=.+ ++++...++.+. .+-+|.-+ ...+..+.++......+-=++.+|
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~----------~gd~~~~~~~~~~~~~~~f~v~~G-- 190 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDS----------SGDLDRLEEIIAALGDRDFIVLSG-- 190 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeC----------CcCHHHHHHHHHhcCccCeeEEeC--
Confidence 7788888999998775 567888777772 23333222 125566666665543211144444
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
.-+.++-.+.+|++++..+..
T Consensus 191 -~d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 191 -DDELALPALLLGADGVISVTA 211 (299)
T ss_pred -chHHHHHHHhCCCCeEEeccc
Confidence 335567788899999998874
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.32 Score=47.46 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=50.1
Q ss_pred HHHHHHHHHcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+-++.+.++| +|.|++...-|+ ....++.+..+++..+ . +.+..|.|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577888885 999999754332 2335567777777652 3 4555588999999999999999998776
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.19 Score=48.53 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=57.7
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.-|- +-.++++ +-.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355778899999996654421111111 223556666667778999986664 5555554 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.+++..+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 632 356666665555443
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.42 Score=47.00 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=47.3
Q ss_pred ceeEcCeeecCceeecccccccccCChh------hHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCCh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG------EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDR 135 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~------e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~ 135 (370)
..+|.+.++++-|+.|||+.. ...+++ .+..-+.-++-|+.+++++....+.+-. ..++. .-++.....
T Consensus 5 P~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~--~~~~~--~~i~~d~~i 79 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGR--GFPGQ--PGIWDDEQI 79 (341)
T ss_dssp -EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGS--SSTTS--EBSSSHHHH
T ss_pred CeeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccc--ccccc--chhchhhHH
Confidence 367888999999999999643 233333 3455556666688888876544333211 11211 112222223
Q ss_pred HHHHHHHHHHHHcCCcEEE
Q 017492 136 NVVAQLVRRAERAGFKAIA 154 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~ 154 (370)
+...++++.+.+.|++.++
T Consensus 80 ~~~k~l~~~vh~~Ga~i~~ 98 (341)
T PF00724_consen 80 PGLKKLADAVHAHGAKIIA 98 (341)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCcccee
Confidence 4556677778888987653
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.15 Score=52.40 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=128.6
Q ss_pred hhcccceeeecccC-CC-CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|.... .. +++|++|++ +..+..||+-|||...+ |..+|.+.++.|...++. .+.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih--~nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLP--QDIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEee--CCCCHHHHH
Confidence 37999999998653 33 488999974 88999999999997654 778999999999776674 234454432
Q ss_pred cc---CC-CceEE-EEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccccccccccccCc
Q 017492 119 ST---GP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (370)
Q Consensus 119 ~~---~~-~~~~~-Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (370)
+. .+ ...+. +...-.....+.+.++...+.++..+.|.-+. ++.--..+|++.. . +. .....+.......
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-~-~~-~~V~diMt~~~it 160 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-D-RF-TQVRDVMSTDLVT 160 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-c-cC-CCHHHhccCCceE
Confidence 21 11 10000 00111122334455566666777766653211 1100112333210 0 00 0000000000000
Q ss_pred ccc-ccchhhHHHhhh-------cCC--CC----ccHHHHHHHHHhcCCcE-------EEE---ec--CCHHHHHHHHHc
Q 017492 192 MDE-ANDSGLAAYVAG-------QID--RS----LSWKDVKWLQTITKLPI-------LVK---GV--LTAEDARIAVQA 245 (370)
Q Consensus 192 ~~~-~~~~~~~~~~~~-------~~d--~~----~~~~~i~~ir~~~~~Pv-------~vK---~v--~~~~~a~~a~~a 245 (370)
... ....-+...+.. ..| .. .+..+|...... + |. .+. ++ ...+.++.+.++
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~-~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY-T-PAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-C-chhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 000 000000000000 000 00 122222222111 1 11 000 01 113557888999
Q ss_pred CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 246 G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
|+|.|.+....|. +...++.+.+|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 239 Gvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999999754332 3456678888888763 577776 88999999999999999997743
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.21 Score=47.88 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=57.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.-|- +-.+.++ +-.+|||++++-.|+++
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 45778999999997654421111111 223455566666678999997775 5566655 33489999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 107 ~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 107 EA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CC---CHHHHHHHHHHHHh
Confidence 32 45666555555443
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.43 Score=46.53 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=56.6
Q ss_pred CcEEEEecCCHHH---HHHHHHcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 226 LPILVKGVLTAED---ARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 226 ~Pv~vK~v~~~~~---a~~a~~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
+++.+-...+.++ +..+.++| +|.|++...-|+ ....++.+..+++.. ..|++..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 4444333345544 66788989 799998753221 234556778887766 568888899999999999999
Q ss_pred hCCCEEEEc
Q 017492 301 LGASGIFIG 309 (370)
Q Consensus 301 lGAd~V~ig 309 (370)
+|||+|-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.3 Score=47.39 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=71.5
Q ss_pred CceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccc
Q 017492 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (370)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (370)
+..|+.|-.-.|+. ...+.+++++.. |+..+.+..|.|+.++|..++.-..-.|-
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl------------------ 225 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL------------------ 225 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec------------------
Confidence 45688876543322 235566777776 99998888899988777766521000010
Q ss_pred cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +-+-.+.+.|+.+++..++||++- |+.+++|+..+++.|+|++-+.
T Consensus 226 -----~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 226 -----GAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -----cccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 000110 111126778899998889999986 5789999999999999999763
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.27 Score=46.70 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=58.1
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++...+++||++.-|=.+-.++++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 345677899999997764432111111 23455666666666899987666655555544 3447999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245555555555444
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.36 Score=47.07 Aligned_cols=42 Identities=14% Similarity=0.468 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
..|+.++++++.+++||+.=| +.++++++.+.+ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 368999999999999988765 689999999987 799999884
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.16 Score=46.21 Aligned_cols=80 Identities=29% Similarity=0.303 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.-.+.|+.+++..+ .-|....++++++++.+.++|++.|+-=| -+.+.+..+.+ .++|++- |+.
T Consensus 50 ~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~----------~~~ev~~~a~~---~~ip~~P--G~~ 114 (211)
T COG0800 50 AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPG----------LNPEVAKAANR---YGIPYIP--GVA 114 (211)
T ss_pred CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHh---CCCcccC--CCC
Confidence 34567999999875 33444567999999999999999985311 12223332222 2566654 899
Q ss_pred CHHHHHHHHHhCCCEE
Q 017492 291 RGTDVFKALALGASGI 306 (370)
Q Consensus 291 ~~~dv~kalalGAd~V 306 (370)
|+.++..|+.+|++.+
T Consensus 115 TptEi~~Ale~G~~~l 130 (211)
T COG0800 115 TPTEIMAALELGASAL 130 (211)
T ss_pred CHHHHHHHHHcChhhe
Confidence 9999999999999866
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.19 Score=46.98 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...|+-|++..++||++- |+.+++|+..+++.|+|++-+
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 6678899999989999886 578999999999999999976
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.26 Score=47.78 Aligned_cols=91 Identities=24% Similarity=0.359 Sum_probs=56.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~ 314 (370)
+.+++.|+++|.+.++-|-...-... -.+.+..+++.+.+++|||+.=|=.+-.|+++. -.+|||+|++-.|+++
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 45678999999997654321111111 223455566666678999876664455666553 3479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 116 ~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 116 PL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 34555555555444
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.2 Score=38.58 Aligned_cols=183 Identities=17% Similarity=0.116 Sum_probs=104.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++.+.+.||.. +... -+.+.++- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 46677787544444444445777777788876543 2 33456666532 2222 35566663 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..+++++++++|++++.+. .|... + | ..+-..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y~-~----------~--------------------------------~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYLT-E----------A--------------------------------PQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7888999999999999874 23210 0 0 000123345
Q ss_pred HHHHHhcCCcEEEEec----CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKGV----LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v----~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+.+.+++||++=.. ++++...++. +. .+-+|.-+. ..+..+.++.+..+++..|+ .|...
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl--~G~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYL--GGLPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE--eCCCc
Confidence 6667777899887532 5677777776 53 344444431 23444555555554455444 23221
Q ss_pred -HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 -GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 -~~dv~kalalGAd~V~igr~~l 313 (370)
-..+..++.+||++...|.+-+
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~ 215 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNF 215 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhh
Confidence 2234556789999988777443
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.5 Score=38.84 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCC-C---ccchHHHHHHHHHHccCCCcEEEecCCCC--------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y---VPATIMALEEVVKATQGRIPVFLDGGVRR-------------- 291 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~-~---~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-------------- 291 (370)
.++++|+... +.|+|.+-++. ||-+... + ..-.++.|.+|.+.+. ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 4688887665 57999999874 5544221 1 1135678999988872 589988886533
Q ss_pred --------HHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 292 --------GTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 292 --------~~dv~kalalGAd~V~igr~~l~~ 315 (370)
-+|+.|++.+|..-|-+++-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 388999999999999999977554
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.2 Score=44.36 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=109.7
Q ss_pred ceeEcCeeecCceeecccccccccCChh---hH--HHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG---EY--ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~---e~--~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~ 136 (370)
..++.+.+|++-|++|||.-.... ++| |. ..-+.=++-|+.+++.+....... ... .+....||...+.+
T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~-~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~--g~~--~~~~~~l~~d~~i~ 83 (363)
T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRAT-PDGLPTDLLAEYYAERAKGGAGLIITEATAVDPG--GRG--YPGQPGLWSDAQIP 83 (363)
T ss_pred CeeECCEEeccceeecCccccccc-CCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcc--ccc--CCCCCccCChhHhH
Confidence 466778999999999999755432 323 33 333333333466555442211111 111 12333455433356
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
....+.+.+.+.|++. .+-+..+ |++.+ ..... .|..+.+.. +... .. ........+.++
T Consensus 84 ~~~~vt~avH~~G~~i-~iQL~H~--Gr~~~-~~~~~-~~~~vapS~---~~~~--------~~----~~~~pr~mt~~e 143 (363)
T COG1902 84 GLKRLTEAVHAHGAKI-FIQLWHA--GRKAR-ASHPW-LPSAVAPSA---IPAP--------GG----RRATPRELTEEE 143 (363)
T ss_pred HHHHHHHHHHhcCCeE-EEEeccC--ccccc-ccccC-CCcccCCCc---cccc--------cC----CCCCCccCCHHH
Confidence 6677778888888854 4454433 21111 00000 011111100 0000 00 011123457788
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc---C----------CCCccc-------hHHHHHHHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKA 276 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~ 276 (370)
|+++.+.+ .+-|++|.++|.|+|.+.+..|+ | -.+|-+ ..+.+..++++
T Consensus 144 I~~ii~~f-----------~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~ 212 (363)
T COG1902 144 IEEVIEDF-----------ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA 212 (363)
T ss_pred HHHHHHHH-----------HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 88888764 36789999999999999653333 1 123322 33456666666
Q ss_pred ccCCCcEEE--------ec-CCC--CHHHHHHHHH-hC-CCEEEEcHH
Q 017492 277 TQGRIPVFL--------DG-GVR--RGTDVFKALA-LG-ASGIFIGRP 311 (370)
Q Consensus 277 ~~~~ipvi~--------~G-GI~--~~~dv~kala-lG-Ad~V~igr~ 311 (370)
++.+.||.. .+ |.. ....+++.|. .| .|.+-+..+
T Consensus 213 vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 213 VGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred hCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecc
Confidence 654444431 22 333 4566777777 78 587777664
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.22 Score=51.25 Aligned_cols=246 Identities=16% Similarity=0.206 Sum_probs=130.2
Q ss_pred hhcccceeeecccC-CC-CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|.... .. +++|++|. +..+++.||+-|||-..+ |-.+|.+.++.|-..++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeeccc-ccCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 37999999998652 23 48899988 467999999999996554 7789999999998888854 56676544
Q ss_pred ccC---C-Cc----eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCcccccccccccc
Q 017492 119 STG---P-GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (370)
Q Consensus 119 ~~~---~-~~----~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (370)
+.. + .. ..+.+. ....+.+.++...+.+...+.|.-+. ++.--..+|++.. +.......+-....
T Consensus 83 e~v~~VKv~eim~~~pvtv~---p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~l 156 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLA---PHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDL 156 (475)
T ss_pred HHHhhcchhhccccCCeEEC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCc
Confidence 321 1 00 111222 12234445555666676665543110 1100112333210 00000000000000
Q ss_pred Ccccc-ccchhhHHHhhh-------cCC--C----CccHHHHHHHHHhcCCcE-------EEE---ec--CCHHHHHHHH
Q 017492 190 GKMDE-ANDSGLAAYVAG-------QID--R----SLSWKDVKWLQTITKLPI-------LVK---GV--LTAEDARIAV 243 (370)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~-------~~d--~----~~~~~~i~~ir~~~~~Pv-------~vK---~v--~~~~~a~~a~ 243 (370)
..... ....-+...+.. ..| . -.+..+|...... + |. .+. ++ ...+-++.+.
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~-~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY-T-PATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC-C-chhhhccCceehheeeeCccHHHHHHHHH
Confidence 00000 000000000000 000 0 0122333222221 1 11 011 11 1135578899
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++|+|.|++...-|+. ....+.+..|++.. .++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 235 ~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 9999999997643432 34556777777754 3799999 66999999999999999998755
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.47 Score=45.18 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCcEEEEe---cCCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHc-------cCCCcE
Q 017492 215 KDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT-------QGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~---v~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipv 283 (370)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|.+.|.+. ........+.+.. ..++-+
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSP-------EELDPAVLILKARAHLDGKGLPRVKI 242 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-------HHHHHHHHHHHHHHhhhhcCCCceEE
Confidence 457777776543344443 35688899999999 99998876432 2222111122211 136789
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+++|||. .+.+.....+|.|.+++|+.+.
T Consensus 243 ~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 243 EASGGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred EEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999997 8888888889999999999764
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.4 Score=43.48 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=76.0
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc----cchHHHHHHHHHHccCCCc
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV----PATIMALEEVVKATQGRIP 282 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~----~~~~~~l~~i~~~~~~~ip 282 (370)
+++.++++.+ +++||++|-. .+.++ ++...+.|-.-|.+.-.|-|.+..+ ...+..++.+++.. .+|
T Consensus 197 n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lP 273 (352)
T PRK13396 197 NFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLP 273 (352)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCC
Confidence 3555777654 6899999965 36666 4555667888888875555444322 23556777776654 689
Q ss_pred EEEec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHH-HhcCHHH-HHHHHHHHHHHHHHHHHHcCC
Q 017492 283 VFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKG-VRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 283 vi~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~~-~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 344 (370)
||+|- |.+. ..-...|+++|||++++=.-+--.- .+.|... --+-++.|.++++..-..+|.
T Consensus 274 Vi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 274 IMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99883 3322 2344557889999999987432110 0112110 012345566666666655553
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.53 Score=45.79 Aligned_cols=42 Identities=19% Similarity=0.643 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHH-HcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~-~aG~d~I~vs 253 (370)
..|+.++++++.+++||+.=| +.+++++..++ +.|+|+|.++
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 368899999999999988754 68999999998 6899999883
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.56 Score=44.95 Aligned_cols=153 Identities=24% Similarity=0.286 Sum_probs=84.3
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCcee-e--cCCC------C--CCHH---HH----hccCCCceEEEEeec
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-L--SSWS------T--SSVE---EV----ASTGPGIRFFQLYVY 132 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~-~--s~~~------~--~~~e---ei----~~~~~~~~~~Qly~~ 132 (370)
..|++++=++. .++.=...|+.+.+.|..++ + ++-. . .+.+ ++ .+...-|.++.|-
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-- 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-- 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC--
Confidence 45766654332 12223467788888887654 2 2110 0 1122 22 2222346677663
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...++++.++++|++++.+. ++-. +. .-|.++.- |. + .. ..+ ..+.......
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~~--~~-~--~~---------------~~g-g~sg~~~~~~ 218 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETRK--PI-L--GN---------------VTG-GLSGPAIKPI 218 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccCc--ee-e--cC---------------Ccc-eecCcccchH
Confidence 344456778888999999998763 2111 10 00110000 00 0 00 000 0111112234
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++.+++||+.-+ +.+++++..++++|+|+|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 67889999999999988754 679999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.66 Score=45.26 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=60.7
Q ss_pred CceEEEEeecCCh----HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccch
Q 017492 123 GIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (370)
Q Consensus 123 ~~~~~Qly~~~d~----~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (370)
.|..+.+-.+.+. +...+.++.++++|+++|.||-.+.. .+++. ++ .
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g~----~---------------- 174 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-PK----E---------------- 174 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-cc----c----------------
Confidence 4566666543221 45567788888899999888743221 01111 00 0
Q ss_pred hhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 199 GLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.. .-++..|+.+.++++.+ ++||+.= ++.+.+++...++ |+|+|.++
T Consensus 175 ------~~-~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 175 ------NR-EIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred ------cc-cCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 00 01235799999999987 8998764 4789999998886 99999884
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=43.26 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=82.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
++|.+...++++.|+++|++++=.-. ++...+..... +. ..+. ....+ ......+... ...
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt------~~~~~~~~~~~-~~----~~~~---~~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQT------FKAEDLVSKNA-PK----AEYQ---KINTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeee------CCHHHhhCccc-cc----cccc---ccCCc--CCCcHHHHHH---HhC
Confidence 56888999999999999999875431 11111110000 00 0000 00000 0011112221 223
Q ss_pred ccHHHHHHHHH---hcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 212 LSWKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 212 ~~~~~i~~ir~---~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.++..+++.+ ..+++++ =...+.+.+..+.+.|++.+.|... -...+..|..+.+ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFL-STPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCcEEEECC
Confidence 55665555554 4577765 4467888999999999999999532 1234556666654 3789999999
Q ss_pred CCCHHHHHHHHH
Q 017492 289 VRRGTDVFKALA 300 (370)
Q Consensus 289 I~~~~dv~kala 300 (370)
..+-+++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999988875
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.3 Score=47.01 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.+.++++.+++||+. .++.+++++..++++|||+|.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 222 ALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 467788999988999885 56789999999999999999884
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=5.4 Score=37.20 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH---ccCC-CcEEEecCCCC
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGR-IPVFLDGGVRR 291 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~-ipvi~~GGI~~ 291 (370)
.++.+.+. ++++-+=.+.+...|..+.++|++.|.. .-||-.|++......+.++++. .... ..+++.| +++
T Consensus 107 Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas-~~~ 182 (239)
T COG0176 107 AIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVAS-ARF 182 (239)
T ss_pred HHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEec-Ccc
Confidence 34444443 6777777889999999999999998876 3456555555444444444443 3223 4566654 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
+.++..+..+|||.+-+.-.++..+..++
T Consensus 183 ~~~~~~~~l~G~d~~Tip~~~l~~l~~~~ 211 (239)
T COG0176 183 PNHVYIAALAGADVLTIPPDLLKQLLKHG 211 (239)
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHhcc
Confidence 99999999999999999998888766553
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.6 Score=38.63 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
...|+.++++++...+|++.=|..+++.+..+.++|+++|.|.
T Consensus 144 ~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 144 PLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred ccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 4578899999998889999988999999999999999999874
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.44 Score=46.04 Aligned_cols=89 Identities=25% Similarity=0.394 Sum_probs=54.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|++.++.|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 32 ~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 4578899999999765442111111 122355666677777899988544444444433 33489999999999987
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.+.+..+
T Consensus 112 k~---~~~gl~~hf~~i 125 (299)
T COG0329 112 KP---SQEGLYAHFKAI 125 (299)
T ss_pred CC---ChHHHHHHHHHH
Confidence 42 245544444433
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.13 Score=47.64 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=51.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH-----------HHHHHHHhCCCE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 305 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~-----------dv~kalalGAd~ 305 (370)
+-++.+.+.|+|+++++.+ .+..+++..+ .--+.+.+||+- . .+..++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~~-~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIRP-AGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcCC-CCCCcchHHHHhCHHHHHHcCCCE
Confidence 4456778899999988532 2344555443 334577899972 3 477788899999
Q ss_pred EEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 306 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 306 V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
+.+||+...+ +-....++.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998642 112234555555553
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.80 E-value=4 Score=40.65 Aligned_cols=216 Identities=15% Similarity=0.065 Sum_probs=104.1
Q ss_pred ceeEcCeeecCceeecccccccc-cCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~-~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~ 140 (370)
..+|.+.++++-|+.|||+.... ..+.-....-+.-++-|+.+++++....+.+.. ..+. ....+|.....+.+.+
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~--~~~~-~~~~l~~d~~i~~~~~ 87 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSD--DTPR-ISARLWDDGDIRNLAA 87 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccc--cCcc-cCcCcCCHHHHHHHHH
Confidence 45677899999999999963321 112111122222345578887766533322210 1110 0122442223455566
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
+++.+.+.|+++ ++-+..+ |.+......+. .| +.... +.. . .. .........++.++|+++
T Consensus 88 l~~~vh~~G~~i-~~QL~H~--G~~~~~~~~~~-~~--~~ps~---~~~----~--~~----~~~~~~p~~mt~~eI~~i 148 (370)
T cd02929 88 MTDAVHKHGALA-GIELWHG--GAHAPNRESRE-TP--LGPSQ---LPS----E--FP----TGGPVQAREMDKDDIKRV 148 (370)
T ss_pred HHHHHHHCCCeE-EEecccC--CCCCCccCCCC-Cc--cCCCC---CCC----C--cc----ccCCCCCccCCHHHHHHH
Confidence 777778888864 3343322 22111000000 00 00000 000 0 00 000001234677888888
Q ss_pred HHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc---C----------CCCccc-------hHHHHHHHHHHccCC
Q 017492 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGR 280 (370)
Q Consensus 221 r~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~ 280 (370)
.+.+ .+.|++|.++|.|+|.+....|+ | -.+|.+ ..+.+..|++.++.+
T Consensus 149 i~~f-----------~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 149 RRWY-----------VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred HHHH-----------HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCC
Confidence 8764 25689999999999999532221 1 112322 335667777776555
Q ss_pred CcEEE---------ecCCCCHH---HHHHHHHhCCCEEEEcH
Q 017492 281 IPVFL---------DGGVRRGT---DVFKALALGASGIFIGR 310 (370)
Q Consensus 281 ipvi~---------~GGI~~~~---dv~kalalGAd~V~igr 310 (370)
++|.. .||..+.+ ++++.|.-..|++-+..
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 55543 12223444 44555654567765543
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.071 Score=47.34 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=79.4
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
..|-++ .+-..+.+.+++++++|- -+.||+|.- .|+. . ....-+|+
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~gK-~vfVHiDli----------~Gl~------~---------------D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAGK-KVFVHIDLI----------EGLS------R---------------DEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCGE----------ETB-------S---------------SHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcCC-EEEEEehhc----------CCCC------C---------------CHHHHHHH
Confidence 444444 466667788999999884 567788842 2221 0 00111233
Q ss_pred hhcCCCC--c--cHHHHHHHHHhcCCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH
Q 017492 205 AGQIDRS--L--SWKDVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (370)
Q Consensus 205 ~~~~d~~--~--~~~~i~~ir~~~~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (370)
.....++ . ....++..++ .++.-+-+.- .+.+. .+.+.+..+|+|.+= |. .++++.+
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~-~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-----------Pg--~~p~vi~ 133 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKK-LGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-----------PG--VMPKVIK 133 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHH-TT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-----------SC--CHHHHHC
T ss_pred HHcCCCcEEEeCCHHHHHHHHH-cCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-----------hH--HHHHHHH
Confidence 2222121 1 2345666655 4666555653 23343 455668899999882 22 2333433
Q ss_pred Hcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 276 ATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 276 ~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+. .++|||+.|=|++.+|+.++|..||++|..+.+-||
T Consensus 134 ~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 134 KIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 332 279999999999999999999999999999887665
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.96 Score=41.39 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHc-CccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~a-G~d~I~vs 253 (370)
..|+.++.+++.+++||+.=+ +.+++++..+++. |+|+|.++
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 468889999999999998865 5789999999987 89999884
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.63 Score=45.46 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-+..+.+ +|+|.|++...-|+ ....++.+..+++..+ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44667777 59999999753232 2345667888887663 577665 89999998888888999987543
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.1 Score=43.44 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+|..++++++.+++||+.-| +.+.+++..++..|+|+|.++.
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 68889999998899998875 6889999999999999999854
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.57 Score=45.09 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 211 SLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
+..++.++++++.+++||+.= ++.+++++..++.+|+|.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 347888999999999998864 4689999999999999999884
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.32 Score=50.20 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=128.9
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|... ...+++|++|.+- +..+..||+-|||...+ +..++.+.++.|...++.. ++++++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 3699999999865 2346788888764 46678999999997764 5577777788887777763 44555432
Q ss_pred cc------CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccc--c--ccccc
Q 017492 119 ST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLT--L--KNFQG 186 (370)
Q Consensus 119 ~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~d~~~~~~~p~~~~--~--~~~~~ 186 (370)
+. ......-++..-.....+.+.++...+.++..+.|.=+. +..--..+|++..-.....+. + ..+..
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVT 160 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEE
Confidence 11 111000011111122334455566666777666553110 000011223321100000000 0 00000
Q ss_pred cccCccccccchhhHHHhhhc------C--CC----CccHHHHHHHHHh------cCCcEEEEecC-----CHHHHHHHH
Q 017492 187 LDLGKMDEANDSGLAAYVAGQ------I--DR----SLSWKDVKWLQTI------TKLPILVKGVL-----TAEDARIAV 243 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~------~--d~----~~~~~~i~~ir~~------~~~Pv~vK~v~-----~~~~a~~a~ 243 (370)
..... ............. . +. -.+.+++.+.... ....+.+.... +.+.++.+.
T Consensus 161 v~~~~---sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 161 VPEGT---TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred ECCCC---CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHH
Confidence 00000 0000000000000 0 00 0133332221111 01234444432 247788999
Q ss_pred HcCccEEEEcc-CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 244 QAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 244 ~aG~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++|+|.|++.. ||.. ...++.+..+++.. .++||++ |++.+.+++..++.+|||+|-+|
T Consensus 238 ~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 238 EAGVDVLVVDTAHGHS-----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HhCCCEEEEECCCCcc-----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999998864 4321 22445677776654 3688888 99999999999999999999775
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.46 Score=45.71 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++.|-...-... -...+..+++.+.+++||++.=|- +-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355678999999997654421111111 223455566666678999887663 4455544 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 355655555555443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=6.2 Score=39.63 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=67.3
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+-++.++.. -++++-+=.+.+.+.|..+.++|++.|... -||-.| ..-|.+..+.+|.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 55544444433 278888888999999999999999988764 233111 1123445566665554
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 278 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 278 ~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
. .+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2 2455555 45999999987 479999999987776553
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=93.55 E-value=11 Score=44.15 Aligned_cols=110 Identities=14% Similarity=0.170 Sum_probs=73.8
Q ss_pred CHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHcc-CCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 235 TAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 235 ~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
++++|+.-+ +.|+|.+-|+- ||-+......-.++.|.+|.+.+. .++|+..=| |+. -+++.|++.+|..-|-
T Consensus 1251 ~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~KiN 1329 (1378)
T PLN02858 1251 DVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKFN 1329 (1378)
T ss_pred CHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEEE
Confidence 567776655 57999999873 554421111235678999998873 358888777 555 4778889999999999
Q ss_pred EcHHHHHHHH----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLA----AEG----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~----~~G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+.. ..+ ..-.....+.+++..+..|+.+|..
T Consensus 1330 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1330 VNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred eCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997755422 111 1223444566777778888888754
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.27 Score=45.22 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++++...+.|++-+++.-.--.+.++..-....+..+++..+.+..+.++|||+-. .+.+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCccc
Confidence 44555555556565544442110011233222334445555544335569999999852 22223445999999999954
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
.+ +...+.++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 32 2234456666666643
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.43 Score=45.94 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~ 293 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++=. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688888888999999999999999999875321 1344444443 334444444 79999987 777888
Q ss_pred HH----HHHHHhCCCEEEE
Q 017492 294 DV----FKALALGASGIFI 308 (370)
Q Consensus 294 dv----~kalalGAd~V~i 308 (370)
++ .++..+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3455589988888
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.3 Score=43.63 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...+.++++.+.|++++=+.++..... . ....++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------------------------------------~------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------------------------------------G------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------------------------------------h------HHHHHH
Confidence 356666777778889999887765421100 0 001235
Q ss_pred HHHHHHHHHhc--CCcEEEEec--CCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ +.++.+..- .+.++|.. +.+.|++.|.= ...+..++.+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEe
Confidence 67889999887 467877642 46666643 33455555421 01122466777777765 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+..+.+..|+.+++..| +|.|.+-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999877 7888664
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.63 Score=46.09 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCcc-----------------CCC----
Q 017492 213 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGAR-----------------QLD---- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~-----------------~~~---- 261 (370)
++|+|. +..+.|.+++... +.+..++|.++|+++|++.- .|-| ...
T Consensus 111 slEeIa---~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEVA---STGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHHH---hccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 445544 3345678888753 23457888899999998841 1111 000
Q ss_pred -------------------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 262 -------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 262 -------------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
....+|+.+..+++.- ++||++ .||.+.+|+.+++.+|+|+|.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0123567777777654 799888 558899999999999999999875
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.57 Score=44.98 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHcC-ccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 239 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~aG-~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
.+.+++.| +++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 35577899 9999997654421111111 22345555666667899987644333344443 344899999999998
Q ss_pred HHHHHhcCHHHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l~ 332 (370)
++.. .++++.++++.+.
T Consensus 107 y~~~---~~~~i~~yf~~v~ 123 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTII 123 (290)
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 7642 3455555554443
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.87 Score=44.28 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++... ++++-+=.+.+.+.+..+.++|++.|... -||-.|+ .-+.+..+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 566554444432 78888888999999999999999988764 2332211 124555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 212 ~~~~~~T~vma-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 212 KKFGYKTKVMG-ASFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred HHcCCCcEEEe-cccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 23455554 56999999986 5799999999988876653
|
The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=7.5 Score=37.25 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=104.0
Q ss_pred CceeecccccccccCChhhHHHHHHHHH-cCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~-~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~ 136 (370)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+...+ + ++.+.+.||.. +... -+.++++- ..+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4667778754444455555677778877 8865433 3 23456666533 2222 24566653 23566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
...++.+.|++.|++++.+. .|.. + +. ..+-..+.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~--~P~y----------~--~~-------------------------------~~~~l~~~ 121 (293)
T PRK04147 87 EAQELAKYATELGYDAISAV--TPFY----------Y--PF-------------------------------SFEEICDY 121 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCcC----------C--CC-------------------------------CHHHHHHH
Confidence 67788899999999999875 2321 0 00 00113445
Q ss_pred HHHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 217 VKWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.+.+.+++||++=.. .+++...++.+. .+-+|.-+. ..+..+.++.+..+ +..| .+|
T Consensus 122 f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v-~~G- 188 (293)
T PRK04147 122 YREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLI-YNG- 188 (293)
T ss_pred HHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEe-
Confidence 66677777899888753 466777777653 334443321 13344455554443 3433 334
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...-++..+.+|+++++.+..
T Consensus 189 --~d~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 189 --FDEMFASGLLAGADGAIGSTY 209 (293)
T ss_pred --ehHHHHHHHHcCCCEEEechh
Confidence 224467788899999987764
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.46 Score=45.56 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-++. .+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 5688888888999999999999999999875421 1343333332 344444444 89999987 8888888
Q ss_pred H----HHHHHhCCCEEEEc
Q 017492 295 V----FKALALGASGIFIG 309 (370)
Q Consensus 295 v----~kalalGAd~V~ig 309 (370)
+ .++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899988883
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.85 Score=43.96 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHHHHhcCCcEEEEecC--CHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v~--~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++++..+.|+++.... +++ .++.+.+.|+|+|.+.- +-...+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--DTPVLGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444445788877653 343 35667789999998842 110001113467888888776 6898885 5899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.72 Score=43.16 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCcEEEEecC---CH----HHHHHHHHcCccEEEEc--------cC-CccCCCCccchH---HHHHHHHH
Q 017492 215 KDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVS--------NH-GARQLDYVPATI---MALEEVVK 275 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~---~~----~~a~~a~~aG~d~I~vs--------~~-gg~~~~~~~~~~---~~l~~i~~ 275 (370)
+.++.|...+++||++=+-. +. +.++.+.++|+++|.+= +| |+. .-.+.- +.+..+++
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~---~~~~~ee~~~ki~aa~~ 135 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGK---VLVPIEEFVAKIKAARD 135 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCC---eecCHHHHHHHHHHHHH
Confidence 34677777778998876532 33 33677889999999992 22 111 112222 23444444
Q ss_pred HccC--CCcEEEe--------cCCCCHHHHHH-HHHhCCCEEEEcHH
Q 017492 276 ATQG--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 311 (370)
Q Consensus 276 ~~~~--~ipvi~~--------GGI~~~~dv~k-alalGAd~V~igr~ 311 (370)
+..+ +++|++= .|+...-.-.+ +..+|||+|++-.+
T Consensus 136 a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 136 ARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred HHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4443 6777776 34433333333 34489999999754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.53 Score=46.04 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=65.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..... . ...-|. ..+ ...+
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~------~~~~~~---~~~------------~~gG--- 256 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P------GLLRSP---LAN------------ETGG--- 256 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c------cccccc---ccC------------CCCc---
Confidence 4678887654455567788899999999999876322110 0 000000 000 0000
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++........++.++.+++.+ ++||+. .++.+.+|+...+.+|||.|.+.
T Consensus 257 -~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 257 -LSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -cCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 000001123688899999998 789874 56789999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.99 Score=39.81 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC-CCcEEEecCCCC--------HHHHHHHHHhCCCEEEEc
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFIG 309 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvi~~GGI~~--------~~dv~kalalGAd~V~ig 309 (370)
++.+.+.|+++|.+.+ ..+..+.+...+ ++|+++.=|-.+ -+.+..+..+|||++++.
T Consensus 19 ~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 19 CDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 5677889999998843 456666666666 788776433332 345566777999999998
Q ss_pred HHHHHH
Q 017492 310 RPVVYS 315 (370)
Q Consensus 310 r~~l~~ 315 (370)
-|+.+.
T Consensus 86 ~~~~~~ 91 (201)
T cd00945 86 INIGSL 91 (201)
T ss_pred ccHHHH
Confidence 887654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=93.33 E-value=3.5 Score=38.80 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.-- ..+..++.+.++++.. .+||.
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 456788888877 356655532 455554 45567788777431 1112456777777765 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..|+.+++..+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 7888874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.37 Score=44.50 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=43.0
Q ss_pred cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 245 aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.|...+.+=-.||. +.|...+.+..+.+ ..++|.-||||+++.+.+...+|||.+..|..+.
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 45555555333332 23444455544433 4599999999999999888778999999999764
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.58 Score=44.55 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=55.1
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+..++++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 455778999999997654422111111 12345555566666888876544445555554 3448999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 532 34555555444444
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.30 E-value=7.7 Score=36.95 Aligned_cols=181 Identities=20% Similarity=0.204 Sum_probs=102.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ +.+.+.+|.. +..+ -+.+.++- ..+-+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556666433333333345677777788876444 22 2345655532 2222 35666654 4467777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++++.|++.|++++.+. .|... + . +.+-..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~--~P~~~------------~--~-----------------------------s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVI--PPYYF------------K--P-----------------------------SQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEE--ESTSS------------S--C-----------------------------CHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEe--ccccc------------c--c-----------------------------hhhHHHHHHH
Confidence 889999999999999875 23320 0 0 0001234567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++|+++=.. .+++...++.+. .+-+|..+. ..+..+.++.+...+++.|+ .|
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---
Confidence 777778999998654 355666666663 233443322 12344555555555566544 34
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
....+..++.+|+++++.|.+-+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 44557889999999999998643
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.3 Score=43.48 Aligned_cols=101 Identities=14% Similarity=0.247 Sum_probs=69.6
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++.. -++++-+=.+.+...|..+.++|++.|... -||-.|+ +-+....+.++...+
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 56644444433 278888888999999999999999998764 2321111 334555666666544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+. .+....+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 224 k~~g~~T-~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 224 KKHGYKT-IVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHcCCCe-EEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 2234 455566999999987 3899999999888876654
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.59 Score=44.68 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
..+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|+++
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYN 105 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 45678999999996654432111111 22345556666667899887555445555444 33479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 106 ~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 106 KP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CC---CHHHHHHHHHHHHh
Confidence 42 34555555444433
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.61 Score=44.79 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=55.5
Q ss_pred HHHHH-cCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 240 RIAVQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 240 ~~a~~-aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
+.+.+ .|+++|.+.++.|-...-... -...+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++-.|++
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y 110 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFY 110 (293)
T ss_pred HHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 45677 999999997764421111111 22345556666667899998655555566544 4568999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 111 ~~~---~~~~l~~~f~~v 125 (293)
T PRK04147 111 YPF---SFEEICDYYREI 125 (293)
T ss_pred CCC---CHHHHHHHHHHH
Confidence 642 234444444443
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.32 Score=49.14 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=64.9
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+ +...+.++++.++++|++++.++ ++-. +...-|+.+.-..|. ++. .+.. +
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~---------~~~----~~~~---g- 227 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI---------VNG----KSSH---G- 227 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce---------ecC----CCCc---c-
Confidence 578888753 33346788888999999998864 2211 100011110000000 000 0000 0
Q ss_pred HhhhcCCCCccHHHHHHHHHhc---CCcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~---~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.++.....+..|+.|.++++.+ ++||+ +.++.+.+||...+.+|||+|.+..
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 0111111234789999999987 78987 4568999999999999999999854
|
|
| >PRK12346 transaldolase A; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=43.17 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=69.1
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+-++.++.. -++++-+=.+.+.+.+..+.++|++.|... -||-.| .+.+....+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 66655544443 278888888999999999999999998763 233111 1334555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|++ ..+|+..++. + ..|+|.+-+.-.++..+..
T Consensus 213 k~~~~~T~Vm~-ASfRn~~qi~-a-laG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 213 KQHRYETIVMG-ASFRRTEQIL-A-LAGCDRLTISPNLLKELQE 253 (316)
T ss_pred HHcCCCcEEEe-cccCCHHHHH-H-HhCCCEEeCCHHHHHHHHh
Confidence 22444555 5599999997 3 4699999999888876653
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.56 Score=44.90 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHc-CccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 239 ARIAVQA-GAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~a-G~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
++.+.+. |+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.=|=.+-.++++ +..+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3556778 99999997764422111111 22345555666667899988433333344433 445899999999998
Q ss_pred HHHHHhcCHHHHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l~~ 333 (370)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 35555555555544
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.69 Score=45.91 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC--------------CC-----------
Q 017492 217 VKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ--------------LD----------- 261 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~--------------~~----------- 261 (370)
++++.+..+.|.++.... +.+..++|.++|+.+|++.- .|-|. ..
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 344444456688888763 23447889999999998852 11110 00
Q ss_pred ------------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 262 ------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 262 ------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777654 789888 66999999999999999999885
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.49 Score=45.20 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=53.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||++++..|++
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 456778999999997664422111111 22345555666667899887545445555544 3348999999999976
Q ss_pred HHHHhcCHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~ 330 (370)
+. ..++++.++++.
T Consensus 108 ~~---~s~~~l~~y~~~ 121 (289)
T PF00701_consen 108 FK---PSQEELIDYFRA 121 (289)
T ss_dssp SS---CCHHHHHHHHHH
T ss_pred cc---chhhHHHHHHHH
Confidence 53 234444444443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.61 Score=43.56 Aligned_cols=83 Identities=31% Similarity=0.376 Sum_probs=56.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCC-H-
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRR-G- 292 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~-~- 292 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..+ +
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 4799999999999999999999999999864311 2444444443 445555555 89999987 7766 4
Q ss_pred ---HHHHHHHHhCCCEEEEc
Q 017492 293 ---TDVFKALALGASGIFIG 309 (370)
Q Consensus 293 ---~dv~kalalGAd~V~ig 309 (370)
..+.+...+|+.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 34455666899999884
|
... |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.72 Score=44.44 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=65.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|- .+...+.++++.++++|+++++++ ++- .+...-|+.+. . |. .. .+. .+. .+
T Consensus 169 ~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~-Nt~-~~~~~id~~~~-~-~~-~~------~~~----~~~---~g- 227 (299)
T cd02940 169 IPVIAKLT--PNITDIREIARAAKEGGADGVSAI-NTV-NSLMGVDLDGT-P-PA-PG------VEG----KTT---YG- 227 (299)
T ss_pred CCeEEECC--CCchhHHHHHHHHHHcCCCEEEEe-ccc-ccccccccccC-C-cc-cc------ccC----CCC---cC-
Confidence 46777764 344567788889999999998864 211 11000010000 0 00 00 000 000 00
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.++.....+..|+.+.++++.+ ++||+.= ++.+.+|+.+.+.+|||+|.+..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 0111112334799999999999 8998764 57999999999999999998853
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.66 Score=44.93 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHHHHHHhcC--CcEEEEecCC----HHHHHHHHHc---CccEEEEccCCccCCCCccchHHHHHHHHHHc---c-CCC
Q 017492 215 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 281 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~----~~~a~~a~~a---G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 281 (370)
+.++.+++..+ .|+.+ .+-+ .++|..+.++ ++|.|.+.|.+++ .|. ..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G~-~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RGV-FRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CCC-HHHHHHHHHHHHHhCCCCCe
Confidence 35777777664 45543 3333 3366666666 4899999886432 111 233444444443 2 467
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.|+++||| +.+.+.+....|+|.+.+|+...
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 89999999 78999988889999999999764
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.6 Score=44.75 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=54.5
Q ss_pred cHHHHHHHHHhcC--Cc-EEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 213 SWKDVKWLQTITK--LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 213 ~~~~i~~ir~~~~--~P-v~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.+...++....+ .. |.--|+.+++|++.+.. |+|++-|+.. +-..+.....+.++.. ..+.| -|+
T Consensus 196 d~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGi 264 (454)
T PRK09427 196 DLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGL 264 (454)
T ss_pred CHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCC
Confidence 4455666666653 22 22246789999999865 7999988432 1112223334444322 23333 479
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 017492 290 RRGTDVFKALALGASGIFI 308 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~i 308 (370)
++.+|+..+..+|||++++
T Consensus 265 t~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 265 TRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCHHHHHHHHhCCCCEEee
Confidence 9999999999999999987
|
|
| >TIGR00874 talAB transaldolase | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.6 Score=42.50 Aligned_cols=101 Identities=12% Similarity=0.181 Sum_probs=69.0
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++.. -++++-+=.+.+.+.+..+.++|++.|... -||-.|| ..+.+..+.+|.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 56654444433 278888888999999999999999998864 2222111 134555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|+ ...+|+..++.+ ..|+|.+-+.-.++..+..
T Consensus 212 k~~g~~T~Im-~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~~ 252 (317)
T TIGR00874 212 KKHGYPTEVM-GASFRNKEEILA--LAGCDRLTISPALLDELKE 252 (317)
T ss_pred HHcCCCcEEE-eeccCCHHHHHH--HHCCCeEeCCHHHHHHHHh
Confidence 2344455 456999999986 5699999999888776643
|
This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=92.88 E-value=4 Score=38.50 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++++.+.++|||.|.+- +++. +...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 162 ~ra~a~~~AGA~~i~lE---------~v~~-~~~~~i~~~v--~iP~igiGaG~~~dgqv 209 (254)
T cd06557 162 EDALALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIPTIGIGAGPDCDGQV 209 (254)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCCEEEeccCCCCCcee
Confidence 56788899999999983 2443 6788888887 79999776 44443443
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.7 Score=42.02 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-------------HHHHHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFKALA 300 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-------------~dv~kala 300 (370)
.+.+++..|.+.|||-|.+..+- ...+-.|+...+..+++.. ++||.+.=--|.+ +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999986531 1112246677888887765 7888775222222 57777888
Q ss_pred hCCCEEEEcH
Q 017492 301 LGASGIFIGR 310 (370)
Q Consensus 301 lGAd~V~igr 310 (370)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 9999999994
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.6 Score=41.48 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCC-Cccc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~-~~~~--~~~~l~~i~~~~~~~ipv 283 (370)
+.+.++++ ..++.||++|.. .+.++. +.+...|-.-+.+.-.|++... .... .+..++.+++.. .+||
T Consensus 123 n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV 199 (266)
T PRK13398 123 NFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPI 199 (266)
T ss_pred CHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCE
Confidence 44567777 457999999975 366664 3445678766666545554332 1222 233455555443 6899
Q ss_pred EEecCCCC------HHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRR------GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~------~~dv~kalalGAd~V~igr~~ 312 (370)
+.|..=.. ......|+++||+++++-+-+
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 99643322 466777889999999998754
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.89 Score=45.18 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+|+.|..+++.- ++||++ .||.+++|+.+++.+|+|+|.++.
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 566777777654 799988 558899999999999999999875
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=92.71 E-value=4.9 Score=36.42 Aligned_cols=125 Identities=18% Similarity=0.073 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.|.....+.++++.+.|++.+-+.+- | + . +. .+..+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~------~-----------------------~~---~~~~~ 48 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVM---------D---G------H-----------------------FV---PNLTI 48 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCc---------c---C------C-----------------------cC---CCcCc
Confidence 46667778899999999998876310 0 0 0 00 01124
Q ss_pred cHHHHHHHHHhcCCcEEE--EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v--K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++.++.|+-+ +.-...+....+.++|+|+|.+ |++.. ......+..+++ . .+.+..+=+-.
T Consensus 49 ~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~ 119 (220)
T PRK05581 49 GPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPA 119 (220)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCC
Confidence 567888888776545423 3222334567778999999998 65420 111223333332 2 44444444556
Q ss_pred CHHHHHHHHHhCCCEEEEcH
Q 017492 291 RGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr 310 (370)
+..+..+.+..++|.+.++.
T Consensus 120 t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 66777788877899888875
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.59 Score=45.68 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHHHHHcCc--cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+..++++|+ |.|.+....| ......+.+.++++.. +++||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788899965 9999964322 1234556677777765 2456555 66889999999999999999877
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.4 Score=41.07 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+|+.|++++ .++||+.= ++.+.+++..+++.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3678888887 68998764 4689999999999999999884
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.3 Score=42.74 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=63.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (370)
-|.++.|-+..+.+.+.++++.+.+. |++++.++ ++-..+....-.+....++..... +..++
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~id~~~~~~~~~~~~~~-------------gG~SG- 222 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVLDPERETVVLKPKTGF-------------GGLAG- 222 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccccCCCCCcccCCCCCC-------------CCcCc-
Confidence 57888887666666677788888787 88888753 221110000000000000000000 00000
Q ss_pred HHHhhhcCCCCccHHHHHHHHHhcC--CcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 201 AAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~ir~~~~--~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+ ....++.++++++.++ +||+.= ++.+.+|+...+.+|||+|.+..
T Consensus 223 -~~i-----~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 223 -AYL-----HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred -hhh-----HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 000 1125667888888884 897754 57999999999999999999853
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=92.48 E-value=4.5 Score=35.49 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..++.++++++..++||++-|..+.+.+..+.++|+|++.++
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 468888998887889999888778899999999999999885
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.81 Score=43.84 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=55.0
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-... -...+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 355778999999986654422111121 22345556666667889876444334445444 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 532 35555555555443
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.35 E-value=1 Score=42.13 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHHH----HHHHHHccCCCcEEEecCCCCH---H
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRG---T 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~l----~~i~~~~~~~ipvi~~GGI~~~---~ 293 (370)
+-|+++-++-+.-.|+.+.++|+|.|.++++++. ..|.+.-+++.+ ..|.+.. ..+||++|.--.++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 5788888888899999999999999999875432 123444444433 3333332 24799999744333 5
Q ss_pred H----HHHHHHhCCCEEEEc
Q 017492 294 D----VFKALALGASGIFIG 309 (370)
Q Consensus 294 d----v~kalalGAd~V~ig 309 (370)
+ +.+.+..||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 455667999999993
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.1 Score=40.57 Aligned_cols=97 Identities=24% Similarity=0.324 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhcCCcEEEEec-C-CHHHH----HHHHHcCccEEEEccCCccCCCC---ccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~-~~~~a----~~a~~aG~d~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipv 283 (370)
....++.+. .+++||++|.. . ++++. ..+.+.|.+-|.+.-.|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 445667765 46999999975 3 67664 44456888777764333333211 123556777777654 6999
Q ss_pred EEec----CCCC--HHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDG----GVRR--GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~G----GI~~--~~dv~kalalGAd~V~igr~~ 312 (370)
+.|. |.|. ..-...|+++||+++++-+-+
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 9943 3222 233446888999999988744
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.9 Score=41.99 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=69.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++... ++++-+=.+.+.+.+..+.++|++.|... -||-.| .+.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 566544444332 78888888999999999999999988764 222111 1334555666665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+.+..|++. .+|+..++.+ ..|+|.|-+.-.++..+.
T Consensus 214 k~~~~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 235666664 6999999986 569999999988887765
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.14 E-value=3.2 Score=39.42 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=33.6
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++++.+.++|||.|.+- +++. +...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 165 ~ra~a~~eAGA~~i~lE---------~v~~-~~~~~i~~~l--~iP~igiGaG~~~dgqv 212 (264)
T PRK00311 165 EDAKALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIPTIGIGAGPDCDGQV 212 (264)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCCEEEeccCCCCCcee
Confidence 56788899999999983 2444 6778888877 79999766 44333333
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=92.14 E-value=7.6 Score=38.97 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=45.7
Q ss_pred cceeEcCeeecCceeeccccccccc--CC-hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHH
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMA--HP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~--~~-~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~ 137 (370)
...+|.+.++++-|++|||+..... .+ +-.+..-+.-++-| .+++++....+.+- ...+ ....+|.....+.
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g--~~~~--~~~gi~~d~~i~~ 88 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTA--PGFP--HVPGIYSDEQVEA 88 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECccc--CcCC--CCCccCCHHHHHH
Confidence 3567888999999999999643211 11 11233333333345 66666543322211 1111 1122332222345
Q ss_pred HHHHHHHHHHcCCcEE
Q 017492 138 VAQLVRRAERAGFKAI 153 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai 153 (370)
+.++++.+.+.|++++
T Consensus 89 ~~~l~~avH~~G~~i~ 104 (391)
T PLN02411 89 WKKVVDAVHAKGSIIF 104 (391)
T ss_pred HHHHHHHHHhcCCEEE
Confidence 5677777788888753
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=92.05 E-value=13 Score=36.44 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHH----HHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDAR----IAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+..++.+.+ +++||++|.. .+.++.. .+.+.|..-|++- |.-+..... ...+..+..+++.. .+||..
T Consensus 123 n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~ 198 (327)
T TIGR03586 123 DLPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGL 198 (327)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEe
Confidence 5677888766 5999999965 5665543 3446787544441 322211111 12445666666655 689955
Q ss_pred ecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHcCCC
Q 017492 286 DGGVRRG-TDVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 286 ~GGI~~~-~dv~kalalGAd~V~igr~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+. =..| .-...|+++||+ +|=+-|-..-...|.+. --.-++.|.+.++..-..+|..
T Consensus 199 SD-Ht~G~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 199 SD-HTLGILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred eC-CCCchHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 54 1111 233457789998 44443322111122211 0123456667777777777753
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.94 Score=42.48 Aligned_cols=71 Identities=28% Similarity=0.296 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHcCccEEEEccC---CccCCCCccchHHHHHHHHHHccCCCcEEEe-----cCCCC--------HHHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRR--------GTDVF 296 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~-----GGI~~--------~~dv~ 296 (370)
+.+.+++..|.+.|||-|.+... ||. .|+...+..+++.+ ++||.+. |++.. -.|+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAAPKEGGL-----TPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccCcCCCCc-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998642 332 46677788887776 7887764 33322 24677
Q ss_pred HHHHhCCCEEEEcH
Q 017492 297 KALALGASGIFIGR 310 (370)
Q Consensus 297 kalalGAd~V~igr 310 (370)
.+..+|||+|.+|-
T Consensus 81 ~~~~~GadGvV~G~ 94 (248)
T PRK11572 81 TVRELGFPGLVTGV 94 (248)
T ss_pred HHHHcCCCEEEEee
Confidence 77779999999994
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.77 Score=44.26 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~ 293 (370)
+.|+++-++-+.-.|+.+.++|.+++.+|+++.. ..|.+.-+++ .+.+|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 5688888888999999999999999999764321 1344444443 344444444 89999987 777766
Q ss_pred HH----HHHHHhCCCEEEEc
Q 017492 294 DV----FKALALGASGIFIG 309 (370)
Q Consensus 294 dv----~kalalGAd~V~ig 309 (370)
++ .++..+||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 65 45556999998883
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.39 Score=44.40 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 212 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..++.++.+++.+ +.|+++.+ +.+.++++.+.++|+|.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 4588899999998 89998875 6899999999999999999965
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.38 Score=44.38 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++.+++.+ +.|+++.+ +.++++|+.+.++|+|.|++++
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567899999998 99999986 6899999999999999999965
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.3 Score=42.89 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=66.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+ +.+.+.++++.++++|+++++++ ++-..+-+ -|+... +....+ ..+..++ .
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~-----~~~~~~---------~~GGLSG--~ 221 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK-----KPVLAN---------ETGGLSG--P 221 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc-----ccccCc---------CCCCcCc--c
Confidence 577777754 78888999999999999999875 33221110 111100 000000 0000001 1
Q ss_pred HhhhcCCCCccHHHHHHHHHhcC--CcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~--~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+ .+...+.|+++++.++ +||+ +.|+.+.+||..-+.+||+.+.|..
T Consensus 222 ~i-----kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T 271 (310)
T COG0167 222 PL-----KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGT 271 (310)
T ss_pred cc-----hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeee
Confidence 11 1236678899999875 9966 4568999999999999999999854
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.6 Score=39.07 Aligned_cols=79 Identities=29% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+++..+. -+....+...++++.+.++|+|+|++. |-+ + .+.++++.. .++.+. | ..|..
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~~~------~----~~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTP-HVD------P----ELIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECC-CCC------H----HHHHHHHHc--CCCEEc-C-cCCHH
Confidence 446666655432 122234567799999999999999552 211 1 222233333 455443 4 99999
Q ss_pred HHHHHHHhCCCEEEE
Q 017492 294 DVFKALALGASGIFI 308 (370)
Q Consensus 294 dv~kalalGAd~V~i 308 (370)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999987
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.7 Score=39.48 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=58.9
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ 296 (370)
+.+.++..+++++ =.+.+.+.+..+.+.|++.+.|... -...+..|..+.+. ..||+.+-|..+-+++.
T Consensus 82 L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG~~t~~Ei~ 150 (327)
T TIGR03586 82 LFERAKELGLTIF-SSPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTGIATLEEIQ 150 (327)
T ss_pred HHHHHHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECCCCCHHHHH
Confidence 5555666788875 4567888899999999999999532 12345566666543 78999999999999998
Q ss_pred HHHH----hCCCEEEE
Q 017492 297 KALA----LGASGIFI 308 (370)
Q Consensus 297 kala----lGAd~V~i 308 (370)
.|+. .|..-|.+
T Consensus 151 ~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 151 EAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHCCCCcEEE
Confidence 8775 46643444
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=91.66 E-value=9.4 Score=35.13 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+..+.++++++.++.|+-+-.. .++++ ...+.++|+|+|.+ |.+. +........+..+++. ..-+-.+-.-
T Consensus 52 ~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~ 124 (229)
T PLN02334 52 IGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNP 124 (229)
T ss_pred cCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECC
Confidence 3457889999888777666554 34544 77889999999988 6551 0011223444544432 3323333322
Q ss_pred CCHHHHHHHHHhC--CCEEEEcH
Q 017492 290 RRGTDVFKALALG--ASGIFIGR 310 (370)
Q Consensus 290 ~~~~dv~kalalG--Ad~V~igr 310 (370)
.+..+..+.+.-+ +|.+++|.
T Consensus 125 ~t~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 125 GTPVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred CCCHHHHHHHHhccCCCEEEEEE
Confidence 3556666666544 99999985
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.6 Score=36.31 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~ 255 (370)
-.+.++++.++++.||+..| +.+.|++..|+++|+-++..||.
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 45689999999999999887 47889999999999999887763
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.8 Score=42.59 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...++++++++.|++.+.|+...... +. . ...+.+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~---------------------------~~~~~~~ 263 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I---------------------------DVYPGYQ 263 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C---------------------------CCCcccc
Confidence 45666778888888899988887543110 00 0 0011235
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
|+..+++++.+++||+.-+ +.+++++..+++.| +|.|.+
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 7778899999999987765 47899999999877 999865
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.43 E-value=6.5 Score=35.28 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++..+ +||++=|..+.+++..+.++|+|+|.++
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 4888999998886 9999888778999999999999999884
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.4 Score=42.41 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+.++.+-++.+.-.|+.+.++|.++|.+|++|-. ..|.+.-+++ .+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777888889999999999999999875321 2355544443 344555555 89999986 6665555
Q ss_pred H----HHHHHhCCCEEEEc
Q 017492 295 V----FKALALGASGIFIG 309 (370)
Q Consensus 295 v----~kalalGAd~V~ig 309 (370)
+ .++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899888883
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.48 Score=43.24 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
+.+.++.+++.+++|+++.+ +.++++++.+.++|+|+|+++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 57789999999999999986 689999999999999999873
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.9 Score=41.04 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++..|+.++++++.+ ++||+.= ++.+++++..+.+ |+|+|.++
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 345799999999986 8998875 4789999999887 79999884
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.88 E-value=15 Score=35.09 Aligned_cols=109 Identities=20% Similarity=0.318 Sum_probs=69.6
Q ss_pred CHHHHHHHHH-cCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC-CHHHHHHHHHhCCCEEEEc
Q 017492 235 TAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFIG 309 (370)
Q Consensus 235 ~~~~a~~a~~-aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~-~~~dv~kalalGAd~V~ig 309 (370)
+++++....+ .|+|.+-++- ||-+....-.-.++.|.++.+.+ ++|++.=||=. .-+|+.+++.+|..-|-+.
T Consensus 157 dp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~--~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~ 234 (286)
T COG0191 157 DPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV--SLPLVLHGGSGIPDEEIREAIKLGVAKVNID 234 (286)
T ss_pred CHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHhCceEEeeC
Confidence 4566766555 5699998752 55443311123567899999987 69988877432 3388999999999999999
Q ss_pred HHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 310 RPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 310 r~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+-+-++.... . ..-+..-.+.+++-++.-|..+|+.
T Consensus 235 Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~ 283 (286)
T COG0191 235 TDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSA 283 (286)
T ss_pred cHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9765543210 0 0112333455566666666666654
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.9 Score=43.51 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+.+.+.++++.+ ++||+. .||.+.+||...+.+||+.|.+.
T Consensus 326 ~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 326 LSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 3567888888887 688665 56899999999999999999984
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.6 Score=41.74 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=60.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+-|+.+-++-++-.|+.+.++|.++|.+|++|-. -.|.+..+++ ...+|.+.+ ++||++|. |...+..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 5688888899999999999999999999876422 1355555554 334445554 89999986 6666444
Q ss_pred H----HHHHHhCCCEEEEcH
Q 017492 295 V----FKALALGASGIFIGR 310 (370)
Q Consensus 295 v----~kalalGAd~V~igr 310 (370)
+ .+++..|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 4 445568998887743
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.72 E-value=2 Score=42.33 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=58.0
Q ss_pred CcEEEEecC------CHHHHHHHHHcCccEEEEccC----Ccc--------CCC-------------------------C
Q 017492 226 LPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GAR--------QLD-------------------------Y 262 (370)
Q Consensus 226 ~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~~----gg~--------~~~-------------------------~ 262 (370)
.|+++-... +.+..+++.++|+++|+++-- |-| +.. .
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 577665432 235578899999999998621 111 000 0
Q ss_pred ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 263 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 198 ~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 198 PTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 124567788887765 7899987 68999999999999999999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.6 Score=43.27 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=51.7
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+...++|+|+++++. .++++..+.|..+++.. ++|+++.+|+ +.+.+.+.|.. ||++.+|+.+=
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 556789999998752 24577888898888877 6999999998 45788887777 99999999764
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.53 E-value=3.7 Score=40.41 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=74.0
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH
Q 017492 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d 168 (370)
+..+--.+..+|++.+..++...+.+.+..... +...+.... +....+++++.|+++++.. .+-.|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~~--g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIAQ--GAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEec--CCcCC-----
Confidence 445566666779999888776434444432211 223333222 2345678889999988752 11000
Q ss_pred hhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc-cHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHHc
Q 017492 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQA 245 (370)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~a 245 (370)
.+... .+..+ +...+.++++.++ +||+.-| +.+.+++..+...
T Consensus 160 ---------------------------------GH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal 205 (336)
T COG2070 160 ---------------------------------GHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL 205 (336)
T ss_pred ---------------------------------CcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh
Confidence 00010 12223 4556899999998 8999875 6899999999999
Q ss_pred CccEEEEcc
Q 017492 246 GAAGIIVSN 254 (370)
Q Consensus 246 G~d~I~vs~ 254 (370)
|||+|.+..
T Consensus 206 GA~gVq~GT 214 (336)
T COG2070 206 GADGVQMGT 214 (336)
T ss_pred ccHHHHhhh
Confidence 999999854
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.8 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=38.4
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccC
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~ 255 (370)
.++|+.++.+|+.. +.|+++.+..+++.+..+++. +|+++|+.+
T Consensus 185 ~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~ 229 (257)
T TIGR00259 185 EVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATT 229 (257)
T ss_pred CCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCC
Confidence 46899999999865 789999999999999998887 999999654
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=39.23 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=33.4
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHH------hC-----CCEEEEcHHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 315 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kala------lG-----Ad~V~igr~~l~~ 315 (370)
..+++.. ++|-+|+.|||.+++|...+|- .| -|++.+|++.|..
T Consensus 205 Ys~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 205 YSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred HHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 3444432 4899999999999999988763 23 4999999988753
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.59 Score=43.48 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHhcCC-cEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 212 LSWKDVKWLQTITKL-PILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~-Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
...+.++.+++.++. |+++.+ +.+.++++.++++|+|+|+|++
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 357889999999988 999976 6899999999999999999965
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.36 E-value=9 Score=37.47 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDVF 296 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv~ 296 (370)
++|+.+.++||++|++-+ .+. ....+|.+.+ ++|+|.-| |-.+-.+++
T Consensus 186 ~dA~ale~AGAf~ivLE~---------Vp~-~la~~It~~l--~IPtIGIGAG~~cDGQVL 234 (332)
T PLN02424 186 ETALALQEAGCFAVVLEC---------VPA-PVAAAITSAL--QIPTIGIGAGPFCSGQVL 234 (332)
T ss_pred HHHHHHHHcCCcEEEEcC---------CcH-HHHHHHHHhC--CCCEEeecCCCCCCceeE
Confidence 578889999999999832 333 2667777777 89999876 555444443
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=3.3 Score=39.46 Aligned_cols=95 Identities=23% Similarity=0.442 Sum_probs=63.2
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- +++++ +++....|-..|.+.-.|-+ .... ...+..++.+++.. ..+|||
T Consensus 119 ntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~-fgy~~~~~D~~~ip~mk~~~-t~lPVi 195 (281)
T PRK12457 119 QTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS-FGYDNLVVDMLGFRQMKRTT-GDLPVI 195 (281)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-CCCCCcccchHHHHHHHhhC-CCCCEE
Confidence 3455666654 6899999976 77776 56777889999999866644 2111 23445666666532 268999
Q ss_pred Ee---------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGT--DVFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~--dv~kalalGAd~V~igr 310 (370)
+| ||-|.-. =+..+++.|||++++=.
T Consensus 196 ~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 196 FDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred EeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 87 4444322 23447789999999976
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.2 Score=39.27 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+...++||++|.+-.... .-...++.+..+++.+ ++||+.--=|....++..+..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 3558888999999998854211 1112367788888776 899998777888999999999999999988654
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=89.93 E-value=4 Score=40.19 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
+.|+.++.+++.+++||++-+ +.+++++..+++.| +|+|-+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 467888999999999999877 57899999998865 999977
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.5 Score=41.26 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+|+.+..+++.. ++||++- ||.+.+|+.+++.+|+|+|.+..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 567777777765 7898885 78999999999999999999863
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.83 E-value=17 Score=35.42 Aligned_cols=210 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred ceeEcCeeecC---ceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceE-----------E
Q 017492 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF-----------F 127 (370)
Q Consensus 62 s~~l~g~~l~~---Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~-----------~ 127 (370)
..++.|+.+.. |++||=+|..--..-+.-..+..+|+++|+. .+=-+.-...+.+........+ +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGAD-avKfQt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGAD-AVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcc-eeeeecccccccccccccCCccccccccccccHH
Q ss_pred EEee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017492 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 128 Qly~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
|+|. .-+.++..++.+.|++.|.-.+ +.....+..|+-+.+..|. -
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~a---------------------------y 127 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPA---------------------------Y 127 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCe---------------------------E
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCC-----HHHHHHHHHcCcc-EEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLT-----AEDARIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~-----~~~a~~a~~aG~d-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
.......++-.+-+.....+.|+++-..++ .+....+.+.|.- .+.+.-...+.-..-...+..++.+.+..
T Consensus 128 KIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-- 205 (347)
T COG2089 128 KIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-- 205 (347)
T ss_pred EecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
+++|=.|.==..-.-.+-|+++||..+
T Consensus 206 n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred CCccccccCccchhHHHHHHHhcccce
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.9 Score=40.74 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH-HH---HHHHHccCCCc-EEEecC---CCC-
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-LE---EVVKATQGRIP-VFLDGG---VRR- 291 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~-l~---~i~~~~~~~ip-vi~~GG---I~~- 291 (370)
+.|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++. +. .+.+.. +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888889999999999999986422121 13445555543 33 333333 678 888765 444
Q ss_pred HHH----HHHHHH-hCCCEEEE
Q 017492 292 GTD----VFKALA-LGASGIFI 308 (370)
Q Consensus 292 ~~d----v~kala-lGAd~V~i 308 (370)
.++ +.+.+. .||++|.+
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 333 577777 99999999
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.3 Score=39.04 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 216 DVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.++.-++ .+++.+-..- ...+- ...+.+.++|.|.+- .+ -....+.++.+.. ++|||+.|=|+
T Consensus 87 ~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL-------PG--v~Pkvi~~i~~~t--~~piIAGGLi~ 154 (181)
T COG1954 87 VIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL-------PG--VMPKVIKEITEKT--HIPIIAGGLIE 154 (181)
T ss_pred HHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc-------Cc--ccHHHHHHHHHhc--CCCEEeccccc
Confidence 3444444 3666555542 22333 355667999999882 11 1224566666655 89999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+-+|+..||..||-+|.-..--+|
T Consensus 155 t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 155 TEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred cHHHHHHHHHhCcEEEeecchhhc
Confidence 999999999999999875543333
|
|
| >COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.65 E-value=5.5 Score=37.50 Aligned_cols=123 Identities=19% Similarity=0.239 Sum_probs=74.1
Q ss_pred HHHHHHHhc---CCcEEEEec------CCH------------HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHH
Q 017492 216 DVKWLQTIT---KLPILVKGV------LTA------------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (370)
Q Consensus 216 ~i~~ir~~~---~~Pv~vK~v------~~~------------~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~ 274 (370)
.|+++-+.+ ++|+++-.+ .+. +-++...+.|+|.+.|---+ +. -| ..-+++....
T Consensus 148 ~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv-yv--eG-e~~ea~~~f~ 223 (306)
T COG3684 148 YIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV-YV--EG-EQEEAAAAFQ 223 (306)
T ss_pred HHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce-ec--cC-ccHHHHHHHH
Confidence 456655554 799888764 122 11344567899998884322 10 01 2333443333
Q ss_pred HHc-cCCCc-EEEecCCCC---HHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 017492 275 KAT-QGRIP-VFLDGGVRR---GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 275 ~~~-~~~ip-vi~~GGI~~---~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
+.- ..++| |+.|.|+.. ...+.=|+..||++|..||+.-.+....| ....+.+++-.|..+|++
T Consensus 224 ~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~v~~g-----------~d~~re~Lrt~g~~ni~e 292 (306)
T COG3684 224 RQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAGVVEQG-----------EDAAREWLRTVGFPNLDE 292 (306)
T ss_pred HhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhcccccC-----------cHHHHHHHHhhccccHHH
Confidence 221 12677 678889965 34555577899999999998643322223 345577888889999988
Q ss_pred hccc
Q 017492 350 ITRD 353 (370)
Q Consensus 350 l~~~ 353 (370)
|+..
T Consensus 293 L~~v 296 (306)
T COG3684 293 LNKV 296 (306)
T ss_pred HHHH
Confidence 8753
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.7 Score=38.60 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- .++++ ++.+...|-+.|++.-+|-+ .... ...+..++.+++ . ..|||
T Consensus 105 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi 179 (258)
T TIGR01362 105 QTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVI 179 (258)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEE
Confidence 4456666654 6899999965 67776 67778899999998866642 2222 124455665554 3 58999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGTD--VFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~d--v~kalalGAd~V~igr 310 (370)
+| ||.|.-.- +..++++|||++++=.
T Consensus 180 ~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 180 FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 87 55554332 2347889999999975
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.4 Score=40.60 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeec-----CChHHHHHHHHHHHHcCCc--EEEEecCCCCCc
Q 017492 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFK--AIALTVDTPRLG 163 (370)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~-----~d~~~~~~~l~ra~~~G~~--ai~itvd~p~~g 163 (370)
.+...|++..+|.++.--=..+.+.+..+.. +..++|+-.. ...+.+.++.+.+++.|+. +=..+++.--.+
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~ 144 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG 144 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC
Confidence 3455777888998885322345666555433 5678887421 1235678888888887753 223444311100
Q ss_pred chhHHhhhhcCCCCccc----cccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe--cCCHH
Q 017492 164 RREADIKNRFTLPPFLT----LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAE 237 (370)
Q Consensus 164 ~r~~d~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~--v~~~~ 237 (370)
.. .+...+.-|.... ..+.+-+.. +.+...+.+ ...+.+.++.++++++.+++|+++=| ..+.+
T Consensus 145 ~~--~~g~s~t~~eea~~f~~~tg~DyLAv-----aiG~~hg~~---~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e 214 (281)
T PRK06806 145 SE--DIEMLLTSTTEAKRFAEETDVDALAV-----AIGNAHGMY---NGDPNLRFDRLQEINDVVHIPLVLHGGSGISPE 214 (281)
T ss_pred cc--cccceeCCHHHHHHHHHhhCCCEEEE-----ccCCCCCCC---CCCCccCHHHHHHHHHhcCCCEEEECCCCCCHH
Confidence 00 0000000000000 000000000 001011111 12456789999999999999999888 57899
Q ss_pred HHHHHHHcCccEEEEcc
Q 017492 238 DARIAVQAGAAGIIVSN 254 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~ 254 (370)
+...+.++|++.|-|..
T Consensus 215 ~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 215 DFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHHHHcCCcEEEEhH
Confidence 99999999999998853
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=89.42 E-value=4.1 Score=40.58 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=61.2
Q ss_pred HHHHHHhc-CCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC--------------------------
Q 017492 217 VKWLQTIT-KLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ-------------------------- 259 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~-------------------------- 259 (370)
+++|.+.. +.|.++-... +.+..+++.++|+.+|++.- .|.|.
T Consensus 123 lEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 202 (367)
T TIGR02708 123 LPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK 202 (367)
T ss_pred HHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence 34444442 4566665542 23557889999999998852 11110
Q ss_pred -C------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 260 -L------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 260 -~------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
. .....+|+.+.++++.. ++||++= ||.+.+|+.++..+|+|+|.++.
T Consensus 203 ~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 203 SMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred chhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 0 00123567888888776 7899976 69999999999999999998764
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.35 E-value=3.5 Score=40.75 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHhc-CCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC------------------CC----C-
Q 017492 217 VKWLQTIT-KLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ------------------LD----Y- 262 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~------------------~~----~- 262 (370)
++++.+.. +-|.+++... +.+..+++.++|+..|+++- .|-|. .+ .
T Consensus 115 ~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 194 (351)
T cd04737 115 LEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG 194 (351)
T ss_pred HHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence 33444444 4577777753 23456788899999998853 11110 00 0
Q ss_pred -----------ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 263 -----------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 263 -----------~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
...+|+.+..+++.. ++||++= ||.+++|+.++...|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 195 KGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred cchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 112567777777765 7899987 589999999999999999998
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=6.8 Score=40.02 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHh---cCCcEEEEec--CCHH-------HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 212 LSWKDVKWLQTI---TKLPILVKGV--LTAE-------DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 212 ~~~~~i~~ir~~---~~~Pv~vK~v--~~~~-------~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
|+++++++..+. .++.|.+..- ...+ ..+.+.++|+|+|+|++-| .+..+++.. .
T Consensus 43 f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G------------~l~~~ke~~-p 109 (443)
T PRK15452 43 FNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG------------LIMMVREHF-P 109 (443)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH------------HHHHHHHhC-C
Confidence 455555554433 3667776631 2222 2466779999999997632 333344432 3
Q ss_pred CCcEEEec--CCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 280 RIPVFLDG--GVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 280 ~ipvi~~G--GI~~~~dv~kalalGAd~V~igr~~ 312 (370)
++||.+|- .|.+...+.-...+|++.|.+.+-+
T Consensus 110 ~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 110 EMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 67888887 5678777766666999999999955
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.4 Score=39.97 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+...++||++|.|-.-. .+-..+++.|..+++.+ ++||+.-==|-++.++.++.++|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 45788889999999985421 11223677888888887 8999998889999999999999999998765443
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=89.17 E-value=21 Score=34.04 Aligned_cols=179 Identities=19% Similarity=0.164 Sum_probs=99.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHc-CCceee--c---CCCCCCHHHHh-------ccCCC--ceEEEEeecCChHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVA-------STGPG--IRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~-G~~~~~--s---~~~~~~~eei~-------~~~~~--~~~~Qly~~~d~~~ 137 (370)
|.++.|+.-.+-.+.++-..+.+-..+. |+...+ + ++.+.+.+|.. +...+ +.++++- ..+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHH
Confidence 5556666433333444445667777677 866543 2 23445666532 22222 3455543 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. .|.. + + .+.+-..+..
T Consensus 85 ai~~a~~a~~~Gad~v~~~--~P~y----------~--~-------------------------------~~~~~i~~~~ 119 (288)
T cd00954 85 SQELAKHAEELGYDAISAI--TPFY----------Y--K-------------------------------FSFEEIKDYY 119 (288)
T ss_pred HHHHHHHHHHcCCCEEEEe--CCCC----------C--C-------------------------------CCHHHHHHHH
Confidence 7788889999999999874 2321 0 0 0001134456
Q ss_pred HHHHHhc-CCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~-~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.+.+.+ ++||++=.. .+++...++.+.. +-+|.-+. ..+..+.++.+..+++..|+. |.
T Consensus 120 ~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~ 188 (288)
T cd00954 120 REIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTA----------TDLYDLERIRAASPEDKLVLN-GF 188 (288)
T ss_pred HHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCCCCcEEEE-ec
Confidence 6777778 799887643 4667777776532 22333221 123444555555443554443 32
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...+...+.+||++++.|..
T Consensus 189 ---d~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 189 ---DEMLLSALALGADGAIGSTY 208 (288)
T ss_pred ---hHHHHHHHHcCCCEEEeChh
Confidence 23466788899999988864
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.14 E-value=5.9 Score=35.58 Aligned_cols=89 Identities=25% Similarity=0.159 Sum_probs=55.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHH--HHHHHHHcCccEEEEccCCccCCCCccch-HHHHHHHHHHccCCCcEEEe-
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD- 286 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~--~a~~a~~aG~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvi~~- 286 (370)
..+.++++|+.. +.++++-. ++++. +++.+.++|+|.|.+ |+-. +... .+.+..+.+ . .+++++.
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~v--h~~~----~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTV--LGVA----DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEE--eccC----CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 466788888875 44444322 23443 689999999999998 4321 1112 233343333 2 6777765
Q ss_pred cCCCCH-HHHHHHHHhCCCEEEEcH
Q 017492 287 GGVRRG-TDVFKALALGASGIFIGR 310 (370)
Q Consensus 287 GGI~~~-~dv~kalalGAd~V~igr 310 (370)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 355544 677778888999998853
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.7 Score=38.27 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH-H---HHHHHHccCCC-cEE
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVF 284 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~i-pvi 284 (370)
...++++++. +-|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.++-+++. + ..+.+.. +. +|+
T Consensus 4 ~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vv 80 (264)
T PRK00311 4 ISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVV 80 (264)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEE
Confidence 3445554432 5688888888899999999999999986422111 13444545543 2 3333322 45 488
Q ss_pred EecCCC----CHHH----HHHHHH-hCCCEEEE
Q 017492 285 LDGGVR----RGTD----VFKALA-LGASGIFI 308 (370)
Q Consensus 285 ~~GGI~----~~~d----v~kala-lGAd~V~i 308 (370)
+|-++. +.++ +.+.+. .||++|-+
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 876644 3355 566777 89999999
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.63 Score=43.18 Aligned_cols=40 Identities=30% Similarity=0.566 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 215 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.++..++..+.|+++.| +.+.+.|+.+.++|||.|+|+|
T Consensus 172 ~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 172 EVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 345555555589999986 6899999999999999999976
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=4.2 Score=38.43 Aligned_cols=93 Identities=26% Similarity=0.319 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- .++++ +++....|-.-|++.-+|-+ ..... ..+..++.+++ . .+|||
T Consensus 113 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi 187 (264)
T PRK05198 113 QTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVI 187 (264)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEE
Confidence 4566777654 6899999965 67776 56777889999998766542 22221 24455665554 3 58999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGTD--VFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~d--v~kalalGAd~V~igr 310 (370)
+| ||-|.-.- +..++++|||++++=.
T Consensus 188 ~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 188 FDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 87 55544322 3357889999999975
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=20 Score=33.38 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++..++. ++++.+++-||-+- -.+.. .+. ....... ..+
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~------------adG~~-----------i~~----~~~~a~~----~g~ 62 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK------------YDGPV-----------IRK----SHRKVKG----LDI 62 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC------------CCCHH-----------HHH----HHHHHHH----cCc
Confidence 4667778888888887 99999987544320 00000 000 0011111 111
Q ss_pred cHHHHHHHHHhcCCcEE--EEe---cCCHHH-HHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPIL--VKG---VLTAED-ARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~--vK~---v~~~~~-a~~a~~aG~d~I~vs 253 (370)
++.++++|+.+++|+. +|. +.+++. ++.+.++|+|+|.+.
T Consensus 63 -~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 63 -WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred -HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 7899999988899985 333 234554 788999999999993
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=3 Score=40.10 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEcc
Q 017492 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.++.++++++.+++|+++=|. .+.++++.+.++|++.|-++.
T Consensus 188 ~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T 234 (286)
T PRK06801 188 PKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYT 234 (286)
T ss_pred CCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehh
Confidence 456889999999999999998887 678899999999999998853
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=88.80 E-value=6 Score=33.97 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---c-CCCcEEEec
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDG 287 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~ipvi~~G 287 (370)
-+.+..+-...+.-|+.-+. .++++ +..|++..+|.|.+|..-|. ..+..+++.+.+ + +++. +..|
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~G 100 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVG 100 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-Eeec
Confidence 34555555556888887765 56666 56677999999999875332 233444444443 2 2444 4779
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q 017492 288 GVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~i 308 (370)
|+-..+|..+.-++|.+.+.-
T Consensus 101 Gvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CccCchhHHHHHHhCcceeeC
Confidence 999999988877899888743
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.6 Score=37.05 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEcc----CCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN----HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~----~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.++.||+.- ..-+.+|--.+.+++....+ -+|.+-|-. .||. .....-..-+..+++.. .+..|=+|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQ--kFme~mm~KV~~lR~ky-p~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQ--KFMEDMMPKVEWLREKY-PNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchh--hhHHHHHHHHHHHHHhC-CCceEEecCCc
Confidence 4578888763 33455565566777766655 467765532 2331 01111112233333332 36677799999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 338 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~ 338 (370)
.- +.+-++..+||+.+..|++.+.+ .--.+++..|+++...+
T Consensus 179 ~~-~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 179 GP-STIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred Cc-chHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 65 88999999999999999998743 12235677777776544
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=88.70 E-value=23 Score=33.97 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++...++|||.|.+ +| +.+.+.+.++.+.+ ..|++ ..+|-.-..++.+.-++|.+.|..|..++++
T Consensus 167 a~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 167 AKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 56778999999988 32 44567777787777 46773 3344211124555567899999999887765
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.70 E-value=9.1 Score=35.25 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHcCccEEEEcc---CCcc-CCCCccchHHH---HHHHHHHc---c-CCCcEEEecCCCCHHHHHHHHH-
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPATIMA---LEEVVKAT---Q-GRIPVFLDGGVRRGTDVFKALA- 300 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~---~gg~-~~~~~~~~~~~---l~~i~~~~---~-~~ipvi~~GGI~~~~dv~kala- 300 (370)
+.++++|+.+.++|+|.|+... .||. ....+.+..++ +..+.++. + +-+++.-.|=|.+++|..--+.
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 5789999999999999988732 2332 11122222221 22222222 2 2377777778999999876554
Q ss_pred -hCCCEEEEcH
Q 017492 301 -LGASGIFIGR 310 (370)
Q Consensus 301 -lGAd~V~igr 310 (370)
-|+|+..=++
T Consensus 243 c~~~~gfygas 253 (276)
T COG5564 243 CPGCDGFYGAS 253 (276)
T ss_pred CCCCCcccccc
Confidence 4788754443
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=88.69 E-value=16 Score=34.69 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++|+.+.++||++|++-+ .+ .+...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 164 ~~A~a~e~AGA~~ivlE~---------vp-~~~a~~It~~l--~iP~iGIGaG~~~dGQv 211 (263)
T TIGR00222 164 EDALALEEAGAQLLVLEC---------VP-VELAAKITEAL--AIPVIGIGAGNVCDGQI 211 (263)
T ss_pred HHHHHHHHcCCCEEEEcC---------Cc-HHHHHHHHHhC--CCCEEeeccCCCCCcee
Confidence 558888999999999832 34 37778888887 79998766 44444444
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.86 Score=44.78 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.|+.|.+.-+.+.+.++++.++++|++++++. ++-. . + +. +.-|. .. + ..+..++.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~~~~-~~--~---------~~GGlSG~-- 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQGPK-NS--D---------ETGGLSGK-- 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---ccCcc-cc--C---------CCCcccCH--
Confidence 3677777665555677888888899999998765 3221 1 0 00 00000 00 0 00001111
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEE-EEecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+ .....+.++.+++.. ++||+ +.++.+.+|+...+.+|||.|.+.
T Consensus 269 ~i-----~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 269 PL-----QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HH-----HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 11 123566788888777 58987 567899999999999999999874
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=24 Score=34.03 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++...++|||.|.+ +| +.+.+.+.++.+.+ ++|++ ..+|-.-..++...-++|.+.|..|...+++
T Consensus 172 a~aY~eAGAD~ifi--~~-------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFP--EA-------MTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEe--cC-------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 56778999999988 32 44677777787776 56773 3344221123444556899999999877664
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=3.2 Score=40.02 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec--CCHHHHHHHHHcCccEEEEcc
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV--LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.++.++++++.+ ++|+++=|. .+.++++.+++.|++.|-++.
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 457899999999999 599988887 788999999999999998854
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.2 Score=39.86 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=56.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH----HHHHHHHccCCCcEEEecCC--CCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~ipvi~~GGI--~~~~d 294 (370)
+.|+++-++-+.-.|+.+.++|+|+|.+++++.. ..|.+..+++. +..|.+.. .+||++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688888888888999999999999999875432 13444444443 33344433 7999999755 34334
Q ss_pred H----HHHHHhCCCEEEE
Q 017492 295 V----FKALALGASGIFI 308 (370)
Q Consensus 295 v----~kalalGAd~V~i 308 (370)
+ .+.+..|+++|.+
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=7.6 Score=37.58 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHc-CccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~a-G~d~I~vs 253 (370)
..++.++.+++.+++||+.-+. .+++++..+++. |+|.|.++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 4677889999999999988764 679999999998 79999773
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=88.44 E-value=1 Score=40.07 Aligned_cols=42 Identities=36% Similarity=0.461 Sum_probs=32.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
-.+.++++++.++.|++..| +.+.+++..+.++|+++|..|+
T Consensus 128 ~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 128 MPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 34578888888999999887 5789999999999999998875
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.6 Score=37.90 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
+.+..+.+..++|+++-. ....+.+.|+|+|.++... ..+.++++.++ .-.+|+.+-.++-.+
T Consensus 61 ~~l~~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d-----------~~~~~~r~~~~-~~~iiG~s~~~s~~~ 123 (221)
T PRK06512 61 EKLVPVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNL-----------AALAEAIEKHA-PKMIVGFGNLRDRHG 123 (221)
T ss_pred HHHHHHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccc-----------cCHHHHHHhcC-CCCEEEecCCCCHHH
Confidence 346666666788988653 3667888999999774210 12344444442 223555444678888
Q ss_pred HHHHHHhCCCEEEEcHH
Q 017492 295 VFKALALGASGIFIGRP 311 (370)
Q Consensus 295 v~kalalGAd~V~igr~ 311 (370)
+.++..+|||.|.+|--
T Consensus 124 a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 124 AMEIGELRPDYLFFGKL 140 (221)
T ss_pred HHHhhhcCCCEEEECCC
Confidence 88888999999999953
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=87.96 E-value=3.6 Score=39.40 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred HHHHHHHcC-CceeecCCCCCCHHHHhccCC-CceEEEEeecC-----ChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017492 93 TARAASAAG-TIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK-----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (370)
Q Consensus 93 la~aa~~~G-~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~-----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (370)
+...|.++. +|+++.---..+++.+..+.. +..++|+-... +.+.+.++++.+.+.|+. +..-+++ ..|..
T Consensus 65 ~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~-~gg~e 142 (282)
T TIGR01859 65 VKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS-VEAELGT-LGGIE 142 (282)
T ss_pred HHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCC-CcCcc
Confidence 455677788 898886322235665554433 44567764211 245678888888888864 4444444 22211
Q ss_pred hHHhhhh----cCCCCccccccccccccCccccccchhhHH-HhhhcCCCCccHHHHHHHHHhcCCcEEEEe--cCCHHH
Q 017492 166 EADIKNR----FTLPPFLTLKNFQGLDLGKMDEANDSGLAA-YVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAED 238 (370)
Q Consensus 166 ~~d~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~--v~~~~~ 238 (370)
|...+ +.-|+. ...+.. ..+...-+ -+.+. +-.....+.+.++.++++++.+++|++.=| ..+.++
T Consensus 143 --d~~~g~~~~~t~~ee--a~~f~~-~tgvD~La--vs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~ 215 (282)
T TIGR01859 143 --DGVDEKEAELADPDE--AEQFVK-ETGVDYLA--AAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQ 215 (282)
T ss_pred --ccccccccccCCHHH--HHHHHH-HHCcCEEe--eccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 10000 000000 000000 00000000 00000 001112456789999999999999998888 578899
Q ss_pred HHHHHHcCccEEEEcc
Q 017492 239 ARIAVQAGAAGIIVSN 254 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~ 254 (370)
.+.+.++|++.|-++.
T Consensus 216 i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 216 IKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHcCCCEEEECc
Confidence 9999999999999864
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 370 | ||||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 0.0 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 0.0 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 1e-180 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-107 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 1e-107 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 1e-107 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 2e-76 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 3e-74 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 6e-74 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 2e-73 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 3e-68 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 2e-67 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 3e-67 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 3e-67 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 8e-67 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 1e-66 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 2e-66 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 4e-66 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 4e-55 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 1e-47 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 2e-47 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 2e-47 | ||
| 1p0k_A | 349 | Ipp:dmapp Isomerase Type Ii Apo Structure Length = | 6e-04 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 9e-04 |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure Length = 349 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 648 bits (1673), Expect = 0.0
Identities = 326/368 (88%), Positives = 348/368 (94%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 363 LPRPVPRL 370
R V RL
Sbjct: 363 SSRAVARL 370
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 606 bits (1564), Expect = 0.0
Identities = 206/374 (55%), Positives = 272/374 (72%), Gaps = 9/374 (2%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M LSSW+TSS+EEVA
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 121 GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
GP +R+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 180 TLKNFQGLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+KNF+ L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296
+DAR AV+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 297 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356
KALALGA +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I + +
Sbjct: 324 KALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 383
Query: 357 TEWDASLPRPVPRL 370
P V ++
Sbjct: 384 KN-----PLAVSKI 392
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 589 bits (1520), Expect = 0.0
Identities = 151/367 (41%), Positives = 226/367 (61%), Gaps = 6/367 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G +FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLK
Sbjct: 124 GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA
Sbjct: 183 NFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+ GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALG
Sbjct: 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALG 300
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362
A + +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 301 AEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE---G 357
Query: 363 LPRPVPR 369
+ P
Sbjct: 358 VTNTAPV 364
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 586 bits (1513), Expect = 0.0
Identities = 157/356 (44%), Positives = 224/356 (62%), Gaps = 8/356 (2%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +TARAA A +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
+ L + + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 ALRALK-------EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFS 350
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 583 bits (1506), Expect = 0.0
Identities = 119/357 (33%), Positives = 193/357 (54%), Gaps = 7/357 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG KI P ++AP A +AH E TARA S GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241
+ + + G + +S +D++ + + LP+ VKG+ EDA +
Sbjct: 192 VQR------YLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADM 245
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A++ GA+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA
Sbjct: 246 AIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALAS 305
Query: 302 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358
GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++ +
Sbjct: 306 GADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDN 362
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 569 bits (1469), Expect = 0.0
Identities = 139/380 (36%), Positives = 219/380 (57%), Gaps = 17/380 (4%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIMTLSSWSTSSVEEV 117
++T +LG + +P ++ TA+ K+ +P E + A +S+ ++ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 ASTGPG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
P I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
+ + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 NTKAGPKAMKKT------NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 289
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 349
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 350 ITRDHIVTEWDASLPRPVPR 369
+ D + + VP
Sbjct: 473 LKPDLLDLSTLKARTVGVPN 492
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 1e-97
Identities = 59/375 (15%), Positives = 120/375 (32%), Gaps = 63/375 (16%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121
+T G P I E A+ A G + S
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGS------------- 123
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLT 180
K+ + + V+++ A + +D P +A L +
Sbjct: 124 ------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN 177
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD-VKWLQTITKLPILVKGV---LTA 236
L + G+ + SWK + +LP ++K V +
Sbjct: 178 LMQELLMPEGERE-----------------FRSWKKHLSDYAKKLQLPFILKEVGFGMDV 220
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPA---------------TIMALEEVVKATQGRI 281
+ + A+ G + +S G Y+ T L + ++
Sbjct: 221 KTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKV 279
Query: 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 341
+ GG+R D+ KAL LGA + + R ++ + V ++ +E+ L M
Sbjct: 280 EILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCA 339
Query: 342 SGCRSLKEITRDHIV 356
C+++ E+ +
Sbjct: 340 LNCQTIAELRNVDYL 354
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 3e-87
Identities = 67/349 (19%), Positives = 131/349 (37%), Gaps = 57/349 (16%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151
+ ARAAS AG + + S ++ + ++VR+ G
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLS-----------------YEIVRKENPNGLI 119
Query: 152 AIALTVDTPRLGRREA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210
L + +EA ++ L + L + E G
Sbjct: 120 FANLGSEATAAQAKEAVEMIGANALQ----------IHLNVIQEIVMPE------GDRSF 163
Query: 211 SLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP--- 264
S + K ++ + + +P++VK V ++ A +AGAA + + +G +
Sbjct: 164 SGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLR 223
Query: 265 -------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311
+T +L E+ + GG++ DV KA+ALGAS +
Sbjct: 224 RQRQISFFNSWGISTAASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGH 282
Query: 312 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
+ +L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 283 FLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 9e-74
Identities = 58/362 (16%), Positives = 118/362 (32%), Gaps = 58/362 (16%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140
+ A A G M + S + + A
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARES-----------------FA 111
Query: 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200
+VR+ L + G + ++ + + + +
Sbjct: 112 IVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIA---------VHLNPAQEV 162
Query: 201 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG- 256
+ + + ++ + +PI+VK ++ E A++ G S G
Sbjct: 163 FQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222
Query: 257 ----------------------ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294
LD+ T ++ EV + + GG+R G D
Sbjct: 223 TNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLD 281
Query: 295 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354
KA+ALGA + PV+ S A EG++ + + + E + AM L+G + + + +
Sbjct: 282 AAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTS 340
Query: 355 IV 356
IV
Sbjct: 341 IV 342
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 6e-56
Identities = 73/347 (21%), Positives = 110/347 (31%), Gaps = 56/347 (16%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAE 146
A A AA A G M L S A +R V ++A L
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVR----KVAPKALLIANL----- 124
Query: 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206
L R ++ L + + EA G +
Sbjct: 125 ----GLAQLRRYGRDDLLRLVEMLEADALA----------FHVNPLQEAVQRGDTDFR-- 168
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYV 263
+ P++VK V L+ E A A + V+ G V
Sbjct: 169 ------GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARV 222
Query: 264 PA------------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 305
T A+ EV + +P+ GGV GTD KALALGA
Sbjct: 223 EEWVRFGEVRHPELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADL 281
Query: 306 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352
+ + RP++ A EG + V + EE A+ G R+ KE
Sbjct: 282 LAVARPLLR-PALEGAERVAAWIGDYLEELRTALFAIGARNPKEARG 327
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 51/276 (18%), Positives = 88/276 (31%), Gaps = 35/276 (12%)
Query: 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113
+D + +K +P M P +A E+ ++
Sbjct: 50 RSSKDVDTTWHIDAYKFDLPFMNHP--SDALA--SPEFVIEMGKQGGLGVINAEG----L 101
Query: 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRR-------AERAGFKAIALTVDTPRLGRRE 166
A I + A + + IA D+ +
Sbjct: 102 WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVR 161
Query: 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKL 226
+N + P + G DL + A +V + ++K +
Sbjct: 162 VSPQNVREIAPIVIK---AGADLLVIQGTL--ISAEHVNTGGE----ALNLKEFIGSLDV 212
Query: 227 PILVKGVLTAEDARIAVQAGAAGIIV-----SNHGARQLDYVPAT-IM----ALEEVVKA 276
P++ GV A ++ GA GIIV +N A ++ AT I A + +
Sbjct: 213 PVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDE 272
Query: 277 TQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 311
T GR + + DG + DV KA+A GA + +G P
Sbjct: 273 TGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 263
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 231
Query: 264 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 232 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 263
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 192
Query: 264 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 193 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291
+ +D + GA I + G D + L + + V +G
Sbjct: 135 DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNS 192
Query: 292 GTDVFKALALGASGIFIG 309
+A+ GA + +G
Sbjct: 193 PALAAEAIRYGAWAVTVG 210
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-06
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 251
QI V ++ Q L ++ V+TA A+ + AG G+
Sbjct: 282 YQIAM------VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQE 335
Query: 252 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
V G Q A+ +V + + +P+ DGG++ V KALALGAS + +G
Sbjct: 336 VMACGRPQ-------GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+K + L ++ ++T E A + GA + IV+ G Q
Sbjct: 185 IKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ--- 241
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+ +V +A I + DGG+R DV KA+A GA + IG
Sbjct: 242 ----ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276
++ ++ +L+ + T ++ +A QAG + + G + +
Sbjct: 124 IRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEAL 182
Query: 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309
+ I V +G + + K LG +GI +G
Sbjct: 183 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGA- 257
D + K +K + T P+ VK L A I Q + N
Sbjct: 140 AYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGN 197
Query: 258 --------RQLDYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDV 295
+ P AL + I + GG+ G D
Sbjct: 198 GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDA 257
Query: 296 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 351
F+ L GA+ + IG + EG R++ +E E M G +S+ +
Sbjct: 258 FEHLLCGATMLQIGTALHK----EGPAIFDRII----KELEEIMNQKGYQSIADFH 305
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 140 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 196
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 197 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ + LP++ V T E ++AGA + +V+ G Q
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ--- 325
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
+ A+ E + + +P+ DGG+R D+ KALA GA + +G
Sbjct: 326 ----LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 205 AGQIDRSLSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGI------------ 250
Q + W++ K+ + ++ E R AGA I
Sbjct: 268 EWQKIT------IGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICIT 321
Query: 251 -IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309
G Q V + + + T IPV DGG+ + ALA+GA I +G
Sbjct: 322 REQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG 381
Query: 310 R 310
R
Sbjct: 382 R 382
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
VK + L I+ V TAE + ++AGA + +V+ G Q
Sbjct: 288 VKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQ--- 344
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
+ A+ + + IPV DGG++ D+ KALA GA + +G
Sbjct: 345 ----LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+ + ++ + TAE AR AG + +V+ G Q
Sbjct: 265 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ--- 321
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
+ A+ + + + DGG++ D+ KALA G + + +G
Sbjct: 322 ----VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 23/108 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGA----AGI---------IVSNHGARQLDY 262
++ + + + + ++ V T E R AGA GI I + G
Sbjct: 140 IQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG------ 193
Query: 263 VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309
+ AL KA P+ DGG+R DV K++ GA+ + IG
Sbjct: 194 TGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIG 239
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 263 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 319
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 320 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 233 VLTAEDARIAVQAGAAGIIVSNHGA----------RQLDYVPATIMAL-EEVVKATQGRI 281
T E+AR AGA +I A + D +++L +V +A I
Sbjct: 152 ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209
Query: 282 PVFLDGGVRRGTDVFKALALGASGIFIG 309
PV GG+ RG + LA GA +G
Sbjct: 210 PVVAAGGIMRGGQIAAVLAAGADAAQLG 237
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284
++ I + G T +DA+ V G I +L + T L+++ + + I +
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170
Query: 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 333
+ GG+ ++ + GR + AEG++ + E +
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRALA---GAEGQQTAAALREQIDR 215
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 8e-05
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATIMALE 271
V +++T ++ + T E+A+ A + G I + HG QL Y L+
Sbjct: 110 VSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND-FQFLK 168
Query: 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309
+V+++ V +G V + + LG +G
Sbjct: 169 DVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCSVVG 204
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287
+ + T + Q G I + G +A+ + V +G
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAG--CRVIAEG 188
Query: 288 GVRRGTDVFKALALGASGIFIG 309
A+ GA + +G
Sbjct: 189 RYNTPALAANAIEHGAWAVTVG 210
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 233 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289
A A + G + + G D +P ++ L R+P+ GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-LPAAANRL--RVPIIASGGF 181
Query: 290 RRGTDVFKALALGASGIFIG 309
G + ALALGA I +G
Sbjct: 182 ADGRGLVAALALGADAINMG 201
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAA--GI---------IVSNHGARQLDYVPA 265
+K ++ +V + + A A GI IV+ G Q
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ------ 313
Query: 266 TIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309
I A+ V Q + V DGG+R D+ KA+A GA + +G
Sbjct: 314 -ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 233 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291
V + A+ + GA +I + + + + +V A IPV GG+
Sbjct: 117 VPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTL-VRQVATAI--SIPVIAAGGIAD 173
Query: 292 GTDVFKALALGASGIFIG 309
G LGA + +G
Sbjct: 174 GEGAAAGFMLGAEAVQVG 191
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 233 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 286
V + AR+ +AGA +I H T L +V ++ IPV
Sbjct: 131 VASDSLARMVERAGADAVIAEGMESGGHIG------EVTTFVLVNKVSRSV--NIPVIAA 182
Query: 287 GGVRRGTDVFKALALGASGIFIG 309
GG+ G + A ALGA + +G
Sbjct: 183 GGIADGRGMAAAFALGAEAVQMG 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 49/326 (15%), Positives = 101/326 (30%), Gaps = 90/326 (27%)
Query: 104 MTLSSWSTSSVEEVASTGPGI----RFFQLYVYKDRNVVAQLVRRAERAGFK----AIAL 155
M S S ++ + + + R F + K +V + V R +K I
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 156 TVDTPRLGRRE-ADIKNR-------FT------LPPFLTLKNF-------QGLDL----- 189
P + R + ++R F L P+L L+ + + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 190 -GKMDEANDSGLAAYVA------GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
GK + +A V ++D + W ++K + + +++ +L D
Sbjct: 161 SGK------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 243 VQA-GAAGIIVSNHGAR--------QLDYVPATIMALEEV-----VKATQGRIPVFLDGG 288
++ ++ I + H + Y ++ L V A F +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNA-------F-NLS 265
Query: 289 VR-----RGTDVFKALALGASGIFIGRPVVYSLA-AEGEKGVRRVLEM----LREEFE-- 336
+ R V L+ + +L E + + + L+ L E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 337 --LAMALSGCRSLKEITRDHIVTEWD 360
+++ E RD + T WD
Sbjct: 326 NPRRLSIIA-----ESIRDGLAT-WD 345
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.98 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.94 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.93 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.93 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.92 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.92 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.92 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.92 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.91 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.9 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.9 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.9 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.89 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.88 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.88 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.87 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.87 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.87 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.87 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.86 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.86 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.85 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.84 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.84 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.82 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.82 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.79 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.79 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.74 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.72 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.72 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.67 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.62 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.51 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.49 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.49 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.47 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.44 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.43 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.41 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.38 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.33 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.32 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.3 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.29 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.28 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.28 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.27 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.24 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.19 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.18 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.15 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.14 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.11 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.03 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 99.02 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.02 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.99 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.98 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.97 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.91 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.9 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.89 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.86 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.85 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.83 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.82 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.81 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.8 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.79 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.78 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.77 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.72 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.71 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.69 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.68 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.66 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.66 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 98.66 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.64 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.63 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.6 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.57 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.56 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.54 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.52 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.5 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.5 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.49 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.49 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.47 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.47 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.45 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.44 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.43 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.41 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.37 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.36 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.34 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.34 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.33 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.31 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.3 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.3 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.28 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.27 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 98.25 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.24 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.23 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.23 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.22 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.22 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.21 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.2 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.19 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.17 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.16 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 98.12 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.12 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.12 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.11 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.1 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.09 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.09 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.03 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.0 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.92 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 97.9 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 97.9 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.89 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.86 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.83 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.82 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.81 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.78 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.76 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.75 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.75 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.75 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.72 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.66 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.65 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.64 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.63 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.61 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.6 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.55 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.54 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.53 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.53 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.52 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.5 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.47 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.46 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 97.44 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.43 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.38 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.36 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.35 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.34 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.3 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.28 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 97.28 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.24 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.24 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.24 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.21 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.16 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.16 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 97.14 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.13 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.1 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.01 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 97.01 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.0 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.96 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.94 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.92 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 96.92 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.91 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 96.89 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 96.85 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 96.84 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.83 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.81 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 96.74 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.73 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 96.73 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 96.67 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 96.65 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 96.65 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.64 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 96.63 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.49 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.47 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.45 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.44 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 96.43 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 96.34 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.28 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.23 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 96.22 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.21 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.19 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 96.18 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 96.18 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.17 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.06 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.05 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 95.97 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 95.97 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 95.97 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 95.95 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 95.91 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.9 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 95.85 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 95.76 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 95.75 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 95.72 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.65 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 95.6 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 95.59 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 95.58 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.53 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 95.52 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 95.49 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 95.47 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.43 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.41 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.33 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.33 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 95.32 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 95.32 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.25 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 95.22 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 95.2 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.18 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 95.17 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.16 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.15 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.04 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.03 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 94.99 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 94.97 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 94.93 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 94.9 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 94.86 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 94.86 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 94.85 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 94.84 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.83 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.82 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.81 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 94.75 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 94.74 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 94.72 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 94.69 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 94.69 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 94.67 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 94.67 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 94.66 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.65 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 94.65 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 94.65 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 94.65 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 94.55 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.53 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.52 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 94.48 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.46 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 94.43 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.43 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.4 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 94.39 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 94.37 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 94.37 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 94.36 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 94.32 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 94.29 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 94.29 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.27 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.26 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.26 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 94.26 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.26 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 94.25 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.24 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 94.21 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.18 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 94.14 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.13 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 94.11 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 94.09 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 94.08 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.07 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.02 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.99 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 93.98 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 93.96 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 93.95 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 93.94 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 93.92 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 93.9 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.88 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.84 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 93.84 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.82 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.78 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 93.77 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 93.76 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 93.76 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 93.75 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.74 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 93.74 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 93.72 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 93.69 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 93.69 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 93.69 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 93.66 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 93.66 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.64 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 93.62 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 93.6 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.59 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 93.57 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 93.51 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 93.51 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 93.43 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 93.42 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.39 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.38 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 93.37 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 93.36 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.35 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.34 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 93.34 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 93.31 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 93.3 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 93.28 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.27 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 93.27 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 93.24 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 93.23 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 93.22 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 93.21 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 93.18 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 93.14 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 93.13 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 93.1 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 93.1 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 93.1 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 93.09 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 92.99 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 92.97 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 92.94 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 92.91 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 92.86 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 92.81 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 92.79 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 92.78 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 92.77 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 92.71 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 92.68 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 92.66 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 92.65 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 92.64 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 92.55 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 92.54 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 92.46 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 92.45 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 92.37 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 92.36 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 92.35 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.33 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 92.33 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 92.32 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 92.28 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 92.25 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 92.16 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.15 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 92.09 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 92.08 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 92.04 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 91.99 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 91.97 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 91.96 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 91.94 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 91.88 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 91.83 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 91.81 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 91.66 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 91.65 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.64 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 91.6 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 91.6 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 91.48 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 91.48 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 91.47 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 91.46 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 91.43 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 91.37 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 91.22 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 91.16 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 90.97 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 90.85 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 90.85 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 90.82 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 90.79 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 90.75 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.7 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 90.66 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 90.61 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 90.61 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 90.58 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 90.57 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.57 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 90.56 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 90.46 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 90.41 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 90.39 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 90.38 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 90.35 | |
| 3hjz_A | 334 | Transaldolase B; parachlorococcus, marine, cyanoba | 90.31 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 90.13 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 90.09 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 90.08 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 90.06 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 89.9 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 89.78 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.77 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 89.71 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 89.64 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 89.57 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 89.57 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 89.55 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 89.52 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 89.49 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 89.48 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 89.24 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 89.21 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 89.17 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 88.86 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.77 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 88.62 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 88.45 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 88.36 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 88.34 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 88.28 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 88.12 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.08 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 88.05 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 87.84 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 87.67 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 87.52 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 87.49 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 87.48 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 87.25 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 87.23 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 87.2 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 87.17 | |
| 3tkf_A | 345 | Transaldolase; structural genomics, center for str | 87.15 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 86.9 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 86.89 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 86.65 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 86.52 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 86.44 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 86.43 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 86.14 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 86.03 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 85.72 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 85.46 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 85.35 | |
| 3cq0_A | 339 | Putative transaldolase YGR043C; alpha/beta barrel, | 85.33 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 85.31 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 85.2 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 85.19 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 84.99 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 84.95 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 84.8 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 84.77 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 84.77 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 84.64 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 84.31 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 84.23 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 83.85 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 83.74 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-81 Score=604.87 Aligned_cols=347 Identities=46% Similarity=0.742 Sum_probs=320.5
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+++++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+.||+||+++|++|+++|+++++|+++++++|||++..+ ++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999998887 6899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|++|+||+|.+|++++.+++.+.. ......+ ......|+.++|++++++|+.+++||++|++.+.++|+.+
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~----~~~~~~~---~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a 234 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALK----EEKPTQS---VPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHH
T ss_pred CcchhhhhcCCCCCcccchhhhcccc----cccccch---hhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 99999999999988766665543211 0000011 1113468889999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|+|+||||+++++++++++.|+++++.+.+++|||++|||+++.|++|+|++|||+|++||+|++++++.|++
T Consensus 235 ~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~ 314 (352)
T 3sgz_A 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (352)
T ss_dssp HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
||.++++.+++||+.+|.++|+++++||+++.++-
T Consensus 315 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~y 349 (352)
T 3sgz_A 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQF 349 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcchh
Confidence 99999999999999999999999999999998863
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-74 Score=566.32 Aligned_cols=357 Identities=57% Similarity=0.927 Sum_probs=320.3
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
++++|++|||+.||++||+.+|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||++++.||++|||++
T Consensus 25 ~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~ 104 (392)
T 2nzl_A 25 PRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAM 104 (392)
T ss_dssp -CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEeccccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+.+.||++|.++|++|+++|+++++|+++++++|++.+..+ ++.|||||.++|++.+.+++++++++|+++++||+|||
T Consensus 105 ~~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p 184 (392)
T 2nzl_A 105 QRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTP 184 (392)
T ss_dssp GGGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCS
T ss_pred cccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 99999999999999999999999999999999999987654 78999999999999999999999999999999999999
Q ss_pred CCcchhHHhhhhcCCCCcccccccccccc--Ccccc-ccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH
Q 017492 161 RLGRREADIKNRFTLPPFLTLKNFQGLDL--GKMDE-ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237 (370)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~ 237 (370)
+.|+|++|++++|.+|.++..+++.+... .+... ....+...++....|++++|++|+++++.+++||++|++.+++
T Consensus 185 ~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e 264 (392)
T 2nzl_A 185 YLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGD 264 (392)
T ss_dssp SCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHH
T ss_pred CccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHH
Confidence 99999999999999988775555321100 00000 0111123455556688899999999999999999999999999
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+|+.+.++|+|+|+|+||||++.++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|++||||+++++
T Consensus 265 ~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~ 344 (392)
T 2nzl_A 265 DAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLA 344 (392)
T ss_dssp HHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHH
Confidence 99999999999999999999999999999999999999887689999999999999999999999999999999999998
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017492 318 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~ 358 (370)
+.|++++.++++.+.+||+.+|.++|+++++||++..+...
T Consensus 345 ~~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 385 (392)
T 2nzl_A 345 FQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 385 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC--
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhC
Confidence 88999999999999999999999999999999999988654
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-73 Score=556.70 Aligned_cols=352 Identities=35% Similarity=0.571 Sum_probs=307.7
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
..++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||++|||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+++.||++|.+++++|+++|+++++|++++.++|++.+..+ .+.|||||.++|++.+.++++|++++|+++++||+|||
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 99999999999999999999999999999899999986543 78999999999999999999999999999999999999
Q ss_pred CCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHH
Q 017492 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (370)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~ 240 (370)
+.|+|++|++++|.+| +...++... ... . ..+... .+++...++.++|++|+++|+.+++||++|++.++++|+
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~-~~~-~-~~g~~l-~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~ 244 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRY-LRG-T-AEGMSL-NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDAD 244 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHH-HTT-S-GGGC------CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhcc-ccc-C-CCCchH-HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 9999999999999877 222222100 000 0 001111 334545688899999999999999999999999999999
Q ss_pred HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 241 ~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
.+.++|+|+|+|+||||+++++++++++.++++++++++++|||++|||+++.|++|+|++|||+|++||||++++++.|
T Consensus 245 ~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G 324 (368)
T 2nli_A 245 MAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGG 324 (368)
T ss_dssp HHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887689999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
++|+.++++.+++||+.+|.++|+++++||++..+....
T Consensus 325 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 363 (368)
T 2nli_A 325 WQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNP 363 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccccEeecc
Confidence 999999999999999999999999999999999987654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-71 Score=547.45 Aligned_cols=367 Identities=89% Similarity=1.331 Sum_probs=326.9
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||++|||+++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
.+.||++|.+++++|+++|+++++|++++.++||+.+..+++.|||||++.|++.+.++++++++.|+++++||+|||+.
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 99999999999999999999999999999999999987678899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|++|++++|.+|.+++.+++............+.....++++..++.++|+.++++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 99999999999888777655543211100000111122245666678889999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|+|+||||+++++++++++.+.++++.+++++|||++|||+++.|+.|++++|||+|++||+|+++++++|++
T Consensus 243 ~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~ 322 (370)
T 1gox_A 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 322 (370)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHH
Confidence 99999999999999999999999999999999988768999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCCCCCCC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPR 369 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~~~~~~~ 369 (370)
++.++++.+.+||+.+|.++|+++++||+++.+.....+.+...+.+
T Consensus 323 gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~~ 369 (370)
T 1gox_A 323 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVAR 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccccccccchhhc
Confidence 99999999999999999999999999999999988777666555544
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-69 Score=549.23 Aligned_cols=352 Identities=40% Similarity=0.685 Sum_probs=317.4
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||+.||++||+.+|+|+.||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+||||+++
T Consensus 121 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~ 200 (511)
T 1kbi_A 121 NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALC 200 (511)
T ss_dssp GCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred ccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-hhhHHHHHHHHH--cCCceeecCCCCCCHHHHhccC---CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 83 KMAHP-EGEYATARAASA--AGTIMTLSSWSTSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 83 ~~~~~-~~e~~la~aa~~--~G~~~~~s~~~~~~~eei~~~~---~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
++.|| ++|+++|++|++ +|+++++|++++.++|++.+.. .++.|||||++.|++.+.+++++++++|+++|+||
T Consensus 201 ~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it 280 (511)
T 1kbi_A 201 KLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT 280 (511)
T ss_dssp GGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999 999999999999 9999999999999999998765 26899999999999999999999999999999999
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~ 236 (370)
+|||+.|+|+++++++|..|.... ..+.+ ... ....+...++....++.++|++|+++|+.+++||++|++.+.
T Consensus 281 vd~p~~g~R~~~~r~g~~~p~~~~-~~~~g---~~~--~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~ 354 (511)
T 1kbi_A 281 VDAPSLGQREKDMKLKFSNTKAGP-KAMKK---TNV--EESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRT 354 (511)
T ss_dssp CSCSSCCCCHHHHHHHHTTCC--------C---CCC--SSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSH
T ss_pred CCCCCccccHHHHhccCCCCcccc-ccccc---ccc--cccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCH
Confidence 999999999999999997774211 10000 000 011122234444467889999999999999999999999999
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
++|+.+.++|+|+|+|+||||++++.++++++.++++.+++ .+++|||++|||+++.|++|+|++|||+|++|||
T Consensus 355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~ 434 (511)
T 1kbi_A 355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP 434 (511)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999999999999999999999999999999999999887 3589999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 312 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 312 ~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
|++++.+.|++++.++++.+++||+.+|.++|+++++||+++.+.....
T Consensus 435 ~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~ 483 (511)
T 1kbi_A 435 FLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTL 483 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTT
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhhhhhh
Confidence 9999988899999999999999999999999999999999998876554
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=528.95 Aligned_cols=355 Identities=43% Similarity=0.742 Sum_probs=317.1
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||++|||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
++.||++|.++|++|+++|+++++|+.+++++|++.+..+++.|||||++. ++...+++++++++|+++++||+|.|+.
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 999999999999999999999999999999999998764578999999888 9999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|++|+++++.+|..+...++..............+...++....+++++|+.|+++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 99999999999877655544331000000000011112223333347889999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|+|+||||++.++++++++.+.++++.+ ++|||++|||+++.|+.|++++|||+|++||++++++.+.|.+
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~ 320 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 320 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988 5699999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
++.++++.+.+||+.+|.++|+++++||+++.++....
T Consensus 321 ~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~g~ 358 (380)
T 1p4c_A 321 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEeccc
Confidence 99999999999999999999999999999999877543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=356.01 Aligned_cols=274 Identities=19% Similarity=0.301 Sum_probs=218.0
Q ss_pred hhcccceeeeccc--CCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH--
Q 017492 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-- 116 (370)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee-- 116 (370)
+.||+|+|+|+.| .+++++||+|+|||++++.||+|+||++++..++++|.++|++|+++|+++++|+++.. +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 5899999999999 57889999999999999999999999999988889999999999999999999998642 222
Q ss_pred -----HhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccC
Q 017492 117 -----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (370)
Q Consensus 117 -----i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (370)
+.+..| .+.+..|-..... ++..+.++..|++++.+|++..
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~------------------------------ 179 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLM------------------------------ 179 (365)
T ss_dssp ------------CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHH------------------------------
T ss_pred ccceEehhhCCCCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEecccc------------------------------
Confidence 222223 3445555432222 2455566788999999998731
Q ss_pred ccccccchhhHHHhhhcCCCCc-cH-HHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccCC-----
Q 017492 191 KMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL----- 260 (370)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~~----- 260 (370)
++.+++.+++++ .| +.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+||||+++
T Consensus 180 ----------qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~ 249 (365)
T 3sr7_A 180 ----------QELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIEN 249 (365)
T ss_dssp ----------HHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC---------
T ss_pred ----------ccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhc
Confidence 123334456666 56 6799999999999999998 899999999999999999999999864
Q ss_pred ----------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Q 017492 261 ----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 261 ----------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~ 330 (370)
+++.++...|.++. .+.+++|||++|||+++.|++|+|++|||+|++||+|++++.+.|+++|.++++.
T Consensus 250 ~r~~~~~~~~~~g~pt~~~L~~v~-~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~ 328 (365)
T 3sr7_A 250 RRGGNRSYLNQWGQTTAQVLLNAQ-PLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNG 328 (365)
T ss_dssp -----CGGGTTCSCBHHHHHHHHG-GGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHH-HhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHH
Confidence 67889999998764 4445899999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 331 LREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 331 l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
+++||+.+|.++|+++++||++.+++...
T Consensus 329 l~~eL~~~m~~~G~~si~eL~~~~~~~~~ 357 (365)
T 3sr7_A 329 WKEDLRLIMCALNCQTIAELRNVDYLLYG 357 (365)
T ss_dssp HHHHHHHHHHHTTCSSTGGGGGCCEEECH
T ss_pred HHHHHHHHHHHhCCcCHHHhccCCEEEcc
Confidence 99999999999999999999999887643
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=349.93 Aligned_cols=277 Identities=26% Similarity=0.287 Sum_probs=212.5
Q ss_pred hhhhcCCccchhhHHHhHhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChh---hHHHHHHH
Q 017492 23 FDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAA 97 (370)
Q Consensus 23 ~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~---e~~la~aa 97 (370)
.+|+....+++.|+++|+.+|++|+|+||+|+ +++++||+|+|||++++.||++|||+++ ++.+ +.+++++|
T Consensus 8 ~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~---~~~~~~~~~~la~~a 84 (332)
T 1vcf_A 8 RKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGG---EENGERINLALAEAA 84 (332)
T ss_dssp ---------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccC---CcchhHHHHHHHHHH
Confidence 48899999999999999999999999999998 7899999999999999999999999865 4444 47999999
Q ss_pred HHcCCceeecCCCCCCHHHHhccCCCceEEEE-------------e----ecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 98 SAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL-------------Y----VYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 98 ~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Ql-------------y----~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+++|+++++|++++. +++. ....|||+ . ...+.+...+ .++..+++++.+++++.
T Consensus 85 ~~~G~~~~~~~~~~~-le~~----~~~~~~ql~~~~~d~pv~~~~~~~q~~~~~~~~~~~---a~~~~~~~a~~i~~n~~ 156 (332)
T 1vcf_A 85 EALGVGMMLGSGRIL-LERP----EALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLR---LVEMLEADALAFHVNPL 156 (332)
T ss_dssp HHHTCEEEEEECHHH-HHCT----TTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHH---HHHHHTCSEEEEECCHH
T ss_pred HHcCCCEEeCCchhc-ccCC----CccceEEeeccCCCceeecccChhhhhccChHHHHH---HHhhcCCCceeeccchH
Confidence 999999999998764 5431 11223332 1 0122233322 23445778877776521
Q ss_pred CCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CC
Q 017492 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LT 235 (370)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~ 235 (370)
+++++ ..+.++ .|+.++++|+ +++||++|++ .+
T Consensus 157 ----------------------------------------~~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~ 194 (332)
T 1vcf_A 157 ----------------------------------------QEAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLS 194 (332)
T ss_dssp ----------------------------------------HHHHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCC
T ss_pred ----------------------------------------HHHhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCC
Confidence 11111 122333 4889999999 9999999988 89
Q ss_pred HHHHHHHHHcCccEEEEccCCc---------cC---------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGA---------RQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 297 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg---------~~---------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k 297 (370)
+++++.+.++|+|+|+|+|||| ++ .++++++++.+.++++.++ ++|||++|||+++.|++|
T Consensus 195 ~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~k 273 (332)
T 1vcf_A 195 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAK 273 (332)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHH
Confidence 9999999999999999999988 54 6788999999999998874 699999999999999999
Q ss_pred HHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 298 ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 298 alalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+|++|||+|++||+|++++ +.|++++.++++.+.+||+.+|.++|+++++||++..
T Consensus 274 al~~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~ 329 (332)
T 1vcf_A 274 ALALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV 329 (332)
T ss_dssp HHHHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred HHHhCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 9999999999999999987 7899999999999999999999999999999998764
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=331.66 Aligned_cols=273 Identities=21% Similarity=0.254 Sum_probs=223.1
Q ss_pred hhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC----CH
Q 017492 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS----SV 114 (370)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~----~~ 114 (370)
+.||+|+|+|+.|+ +.+++||+|+|||++++.||++|||+|++....+.|..||++|+++|+++++|+++.. ..
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 58999999999998 7899999999999999999999999988765567788999999999999999998421 11
Q ss_pred -H--H-HhccCC-CceEEEEee----c-CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017492 115 -E--E-VASTGP-GIRFFQLYV----Y-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 115 -e--e-i~~~~~-~~~~~Qly~----~-~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
+ + +.+..| .+.+.++.. + .+.+...+ .++..+++++.|+++.
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~---av~~~~a~al~Ihln~------------------------- 158 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQD---AIQMIEADAIAVHLNP------------------------- 158 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHH---HHHHTTCSEEEEECCH-------------------------
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHH---HHHHhcCCCeEEEecc-------------------------
Confidence 1 1 333445 344555543 1 23333322 3445688899988751
Q ss_pred cccccCccccccchhhHHHhhhcCCCCc---cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCc-
Q 017492 185 QGLDLGKMDEANDSGLAAYVAGQIDRSL---SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA- 257 (370)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg- 257 (370)
.++.+++.++.++ .++.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+||||
T Consensus 159 ---------------~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 159 ---------------AQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp ---------------HHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred ---------------hhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 1122333345555 477899999999999999987 899999999999999999999999
Q ss_pred --------cC--------------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 258 --------RQ--------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 258 --------~~--------------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
|+ .+++.|+...|.+++++++ ++|||++|||+++.|++|+|++|||+|++||||+++
T Consensus 224 ~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~ 302 (368)
T 3vkj_A 224 NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKS 302 (368)
T ss_dssp CHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred cccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 43 2458888899999988874 699999999999999999999999999999999998
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017492 316 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~ 358 (370)
+. .|++++.++++.+.+||+.+|.++|+++++||++..+...
T Consensus 303 ~~-~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~~ 344 (368)
T 3vkj_A 303 AI-EGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVIL 344 (368)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEEC
T ss_pred Hh-cChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEec
Confidence 65 6899999999999999999999999999999999888764
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=328.89 Aligned_cols=275 Identities=24% Similarity=0.341 Sum_probs=224.6
Q ss_pred hHhhcccceeeecccC--CCCCCccceeEcCeeecCceeeccccccc-ccCChhhHHHHHHHHHcCCceeecCCCCCCHH
Q 017492 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (370)
Q Consensus 39 n~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~-~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e 115 (370)
++++|++|+|+||+|+ +++++|++|+|||++++.||++|||++.. ..++++|.+++++|.++|+++++|++++. ++
T Consensus 21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~ 99 (349)
T 1p0k_A 21 RETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LK 99 (349)
T ss_dssp CCCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TT
T ss_pred ccCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-cc
Confidence 3678999999999998 77899999999999999999999996544 45567799999999999999999998654 32
Q ss_pred H---------HhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccc
Q 017492 116 E---------VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 116 e---------i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
+ +.+..+ .|.+.|+....+.+... +.++.+|++++.||++||.. +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~----------~~----------- 155 (349)
T 1p0k_A 100 DPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQE----------IV----------- 155 (349)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTT----------C------------
T ss_pred CcccccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhh----------hc-----------
Confidence 2 222222 57888987544554433 34567899999999998741 00
Q ss_pred ccccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCc---
Q 017492 186 GLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA--- 257 (370)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg--- 257 (370)
++..++.+ .++.++++|+.+++||++|++ .++++++.+.++|+|+|+++||||
T Consensus 156 -------------------~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~ 216 (349)
T 1p0k_A 156 -------------------MPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNF 216 (349)
T ss_dssp --------------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC------
T ss_pred -------------------CCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcch
Confidence 00123344 467899999999999999987 889999999999999999999988
Q ss_pred ------cC-------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH
Q 017492 258 ------RQ-------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 324 (370)
Q Consensus 258 ------~~-------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v 324 (370)
++ .++++++++.|.++++.+ .++|||++|||++++|+.|++++|||+|++||+|++...+.|.+++
T Consensus 217 ~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~ 295 (349)
T 1p0k_A 217 SKIENLRRQRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGL 295 (349)
T ss_dssp ---------CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHH
T ss_pred hhHHHhhcccchhhhhccCccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHH
Confidence 43 467889999999998876 5799999999999999999999999999999999998877788999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~ 358 (370)
.++++.+.+||+.+|.++|+.+++|++++.+...
T Consensus 296 ~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~~~~ 329 (349)
T 1p0k_A 296 LEEIQLILEELKLIMTVLGARTIADLQKAPLVIK 329 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhCCeecc
Confidence 9999999999999999999999999999988763
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=346.79 Aligned_cols=314 Identities=18% Similarity=0.223 Sum_probs=235.7
Q ss_pred HHhCCcchhhhhcCCccchhhHHHhHhhcccceeeec-ccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHH
Q 017492 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (370)
Q Consensus 15 ~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr-~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~l 93 (370)
..+||+..|+|+.+|++++ ++|..+||+|+|+|+ .+++++++|++|+|+|++++.||++|||++. .++ .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~g~--~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDAL--ASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCTTT--CCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCCCc--ccH----HH
Confidence 3578999999999999999 469999999999998 8889999999999999999999999999843 344 79
Q ss_pred HHHHHHcCCceeecC--------CCCCCHHHHhccCC-------CceEEEEeecC-ChHHHHHHHHHHHHcCCcEEEEec
Q 017492 94 ARAASAAGTIMTLSS--------WSTSSVEEVASTGP-------GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTV 157 (370)
Q Consensus 94 a~aa~~~G~~~~~s~--------~~~~~~eei~~~~~-------~~~~~Qly~~~-d~~~~~~~l~ra~~~G~~ai~itv 157 (370)
+++++++|.++++++ ..+.++|++++... .+.|+|+|... +++...+++++++++|+.+++ .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 999999999999986 22344667664422 35799998655 899999999999999988765 22
Q ss_pred CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH
Q 017492 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237 (370)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~ 237 (370)
. +.+..+..+.+.-. +...- .++... ..+++ ..+...|+.++++++.+++||++|++.+++
T Consensus 163 ~----~~~~~e~a~~~~~a-gad~i---~i~~~~-------~~~~~----~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e 223 (393)
T 2qr6_A 163 S----PQNVREIAPIVIKA-GADLL---VIQGTL-------ISAEH----VNTGGEALNLKEFIGSLDVPVIAGGVNDYT 223 (393)
T ss_dssp C----TTTHHHHHHHHHHT-TCSEE---EEECSS-------CCSSC----CCC-----CHHHHHHHCSSCEEEECCCSHH
T ss_pred C----CccHHHHHHHHHHC-CCCEE---EEeCCc-------ccccc----CCCcccHHHHHHHHHhcCCCEEECCcCCHH
Confidence 2 23444433332100 00000 000000 00011 123347888999999999999999999999
Q ss_pred HHHHHHHcCccEEEEcc--CCccCCC-CccchHHHHHHHHHH-------ccCC-CcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 238 DARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~--~gg~~~~-~~~~~~~~l~~i~~~-------~~~~-ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
+|+.+.++|+|+|+|++ |++++.+ +++++++.|+++++. ++++ +|||++|||+++.|++|+|++|||+|
T Consensus 224 ~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V 303 (393)
T 2qr6_A 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAV 303 (393)
T ss_dssp HHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999987 5566554 478999999988877 4333 99999999999999999999999999
Q ss_pred EEcHHH-----------HHHHHhcCH---HH--------------HHHHH----------HHHHHHHHHHHHHcCCCChh
Q 017492 307 FIGRPV-----------VYSLAAEGE---KG--------------VRRVL----------EMLREEFELAMALSGCRSLK 348 (370)
Q Consensus 307 ~igr~~-----------l~~~~~~G~---~~--------------v~~~l----------~~l~~el~~~m~~~G~~~l~ 348 (370)
++||+| +|++++.|. +| +.+++ +.|++||+..|.++|+++++
T Consensus 304 ~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~ 383 (393)
T 2qr6_A 304 VLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLK 383 (393)
T ss_dssp EECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHH
T ss_pred EECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999996 444444332 22 23333 36689999999999999999
Q ss_pred hhcccceee
Q 017492 349 EITRDHIVT 357 (370)
Q Consensus 349 ~l~~~~l~~ 357 (370)
||++..+..
T Consensus 384 el~~~~~~~ 392 (393)
T 2qr6_A 384 SFQKVSLHV 392 (393)
T ss_dssp HHTTCCEEE
T ss_pred HHhhccEec
Confidence 999988764
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=296.38 Aligned_cols=264 Identities=18% Similarity=0.191 Sum_probs=190.5
Q ss_pred HHHhHhhcccceeeecc--cCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHc-CCceeecCCCCC
Q 017492 36 LQENRNAFSRILFRPRI--LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTLSSWSTS 112 (370)
Q Consensus 36 ~~~n~~~~~~i~l~pr~--l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~-G~~~~~s~~~~~ 112 (370)
.-.|..+||+|+|+||+ +.+++++|++|+|+|++++.||++|||++.+ +..+++++.+. |..+...++...
T Consensus 9 ~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~~ 82 (336)
T 1ypf_A 9 HMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPEK 82 (336)
T ss_dssp ---CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGGG
T ss_pred cccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCHH
Confidence 45789999999999999 5789999999999999999999999998764 34676664454 444444333211
Q ss_pred CHHHHhcc--CCCceEEEEeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccc
Q 017492 113 SVEEVAST--GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (370)
Q Consensus 113 ~~eei~~~--~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (370)
..+.+.+. ..-+..+|+ +.+.+. .+.++.+.+.| ++++.+++.
T Consensus 83 ~~~~i~~~~~~g~~v~v~~--g~~~~~-~~~a~~~~~~g~~~~~i~i~~~------------------------------ 129 (336)
T 1ypf_A 83 RISFIRDMQSRGLIASISV--GVKEDE-YEFVQQLAAEHLTPEYITIDIA------------------------------ 129 (336)
T ss_dssp HHHHHHHHHHTTCCCEEEE--CCSHHH-HHHHHHHHHTTCCCSEEEEECS------------------------------
T ss_pred HHHHHHHHHhcCCeEEEeC--CCCHHH-HHHHHHHHhcCCCCCEEEEECC------------------------------
Confidence 11111111 111344452 222222 23445555566 555554320
Q ss_pred cCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCCC------
Q 017492 189 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD------ 261 (370)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~~------ 261 (370)
.+++...|+.|+++++.++.|+++|+ +.++++|+.+.++|+|+|+++||||++.+
T Consensus 130 ------------------~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~ 191 (336)
T 1ypf_A 130 ------------------HGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTG 191 (336)
T ss_dssp ------------------SCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHS
T ss_pred ------------------CCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccC
Confidence 01333578999999999976777787 89999999999999999999999998754
Q ss_pred Cccc--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHhc
Q 017492 262 YVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAE 319 (370)
Q Consensus 262 ~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~~ 319 (370)
++.+ ++..|+++++++ ++|||++|||+++.|++|+|++|||+|++||+|+ |++++.
T Consensus 192 ~g~~g~~~~~l~~v~~~~--~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~ 269 (336)
T 1ypf_A 192 FGTGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASE 269 (336)
T ss_dssp CSSTTCHHHHHHHHHHTC--SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC----------------
T ss_pred cCCchhHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccch
Confidence 3444 788999999887 8999999999999999999999999999999999 888877
Q ss_pred CHHHHH-----------------HHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017492 320 GEKGVR-----------------RVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 320 G~~~v~-----------------~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~ 358 (370)
|++++. ++++.+++||+.+|.++|+++++||++..+...
T Consensus 270 ~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~~ 325 (336)
T 1ypf_A 270 FQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIRTVDYVVV 325 (336)
T ss_dssp -------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGCCEEEC
T ss_pred hhccCccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhCcCCEEEE
Confidence 777665 899999999999999999999999998877664
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=291.51 Aligned_cols=263 Identities=19% Similarity=0.194 Sum_probs=203.6
Q ss_pred HHHhHhhcccceeeecccC-CC-CCCccceeEc-----CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC
Q 017492 36 LQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS 108 (370)
Q Consensus 36 ~~~n~~~~~~i~l~pr~l~-~~-~~vd~s~~l~-----g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~ 108 (370)
+++|..+||+|.|+|+.+. ++ +++||+|+|+ +++++.||++|||++. .+..+|++++++|...+++.
T Consensus 15 ~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~------~~~~lA~Ava~~Gglg~i~~ 88 (351)
T 2c6q_A 15 VPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTV------GTFEMAKVLCKFSLFTAVHK 88 (351)
T ss_dssp ----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTT------SCHHHHHHHHHTTCEEECCT
T ss_pred cccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCC------CcHHHHHHHHHCCCEEEEcC
Confidence 5779999999999999986 67 7999999999 9999999999999864 37789999999998888864
Q ss_pred CCCCCHHHHhcc---CC---CceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccc
Q 017492 109 WSTSSVEEVAST---GP---GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180 (370)
Q Consensus 109 ~~~~~~eei~~~---~~---~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~ 180 (370)
+.++|++.+. .| ......+ ....+.. +.++.+.+. |++++.+++..
T Consensus 89 --~~s~e~~~~~i~~~p~~l~~v~~~~--g~~~~~~-~~~~~l~~~~~g~~~i~i~~~~--------------------- 142 (351)
T 2c6q_A 89 --HYSLVQWQEFAGQNPDCLEHLAASS--GTGSSDF-EQLEQILEAIPQVKYICLDVAN--------------------- 142 (351)
T ss_dssp --TCCHHHHHHHHHHCGGGCTTEEEEE--CSSHHHH-HHHHHHHHHCTTCCEEEEECSC---------------------
T ss_pred --CCCHHHHHHHHhhCchhhheeEeec--CCChHHH-HHHHHHHhccCCCCEEEEEecC---------------------
Confidence 5677776543 22 1122222 2233322 334444444 77777665310
Q ss_pred cccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-
Q 017492 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR- 258 (370)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~- 258 (370)
+++...|+.++++|+.+ ++||++|.+.+.++|+.+.++|+|+|+|++|+|+
T Consensus 143 ---------------------------g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~ 195 (351)
T 2c6q_A 143 ---------------------------GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSV 195 (351)
T ss_dssp ---------------------------TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTT
T ss_pred ---------------------------CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcC
Confidence 11223688999999999 8999999999999999999999999999988763
Q ss_pred ----CC-CCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH-------------------
Q 017492 259 ----QL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------- 313 (370)
Q Consensus 259 ----~~-~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l------------------- 313 (370)
+. .++.+++..|.++.+.+. .++|||++|||+++.|++|+|++|||+|++|++|+
T Consensus 196 ~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~ 275 (351)
T 2c6q_A 196 CTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKL 275 (351)
T ss_dssp BCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEE
T ss_pred cCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeee
Confidence 22 246778888888877653 37999999999999999999999999999999997
Q ss_pred -HHHHhcC--------------HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 314 -YSLAAEG--------------EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 314 -~~~~~~G--------------~~~----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
|+++..| ++| |.++++.|..||+..|.++|+++++||++.....
T Consensus 276 ~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~~~v 344 (351)
T 2c6q_A 276 FYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFI 344 (351)
T ss_dssp EECTTBHHHHHHHSSSCCTTCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHCCEE
T ss_pred ccccccHhhhhcccccccccccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCCcEE
Confidence 5554433 366 9999999999999999999999999999765443
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=282.22 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=208.4
Q ss_pred hhcccceeeecccCCCC--CCc--cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH
Q 017492 41 NAFSRILFRPRILIDVS--KID--MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (370)
Q Consensus 41 ~~~~~i~l~pr~l~~~~--~vd--~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee 116 (370)
.+||+|.|+|+.+.+++ ++| ++|+|+|++++.||++|||. +.+|..+|++++++|.+++++++ .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM~------~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANMD------TITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCST------TTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCCC------CchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 48999999999998876 766 45599999999999999993 45689999999999999999864 78998
Q ss_pred HhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 117 i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
+.+......|+|.|...+++...+.++++.++|++.|.++ ++. |
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id--~a~-G--------------------------------- 123 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVD--VAH-A--------------------------------- 123 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEE--CSC-C---------------------------------
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEe--CCC-C---------------------------------
Confidence 8765544568888887788888899999999999966554 321 0
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC------CccchHHH
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPATIMA 269 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~------~~~~~~~~ 269 (370)
.+...|+.++++|+.+ ++||++|.+.++++|+.+.++|+|+|+|++|+|++.+ .+.+.+..
T Consensus 124 ------------~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 124 ------------HAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp ------------SSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHH
T ss_pred ------------CcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHH
Confidence 0112478999999998 7999999999999999999999999999999887532 35667777
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh-------------------------------
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA------------------------------- 318 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~------------------------------- 318 (370)
+.++++.+ . |||++|||+++.|+.|+|++|||+|++||+|+....+
T Consensus 192 I~~~~~~~--~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~ 268 (361)
T 3r2g_A 192 IQDCSRAD--R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQ 268 (361)
T ss_dssp HHHHTTSS--S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTC
T ss_pred HHHHHHhC--C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhcc
Confidence 88776654 2 9999999999999999999999999999998632110
Q ss_pred -------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|. ..+.+++.+|..+||..|.++|+.+|+||+..
T Consensus 269 ~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 269 MHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRK 317 (361)
T ss_dssp CSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHT
T ss_pred ccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhC
Confidence 010 13788999999999999999999999999654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=266.15 Aligned_cols=301 Identities=18% Similarity=0.246 Sum_probs=186.8
Q ss_pred HhhcccceeeecccC-CCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017492 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (370)
Q Consensus 40 ~~~~~~i~l~pr~l~-~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei 117 (370)
..+||+|.|+|+.+. +++++|++|+|+ |++++.||++|||++.+ +..++.+++++|...+++ ++.++|++
T Consensus 9 ~~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~------~~ela~a~a~aGglg~i~--~~~s~e~~ 80 (404)
T 1eep_A 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQ 80 (404)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHH
T ss_pred CCCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCC------CHHHHHHHHHCCCEEEEC--CCCCHHHH
Confidence 458999999999997 789999999999 99999999999998743 455667788888888886 45678877
Q ss_pred hccCCCceEEE----EeecCChHHHH-HHHHHHHH----cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccc
Q 017492 118 ASTGPGIRFFQ----LYVYKDRNVVA-QLVRRAER----AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (370)
Q Consensus 118 ~~~~~~~~~~Q----ly~~~d~~~~~-~~l~ra~~----~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (370)
.+..+...++| ++...+..... .++..... .+++.+..+.+.|.. .|..+-+..+ . .++....
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~----~---~~i~~~~ 152 (404)
T 1eep_A 81 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRV----G---AAVSIDI 152 (404)
T ss_dssp HHHHHHHHTCC--------------------------------------CCTTC-CBCTTSCBCC----E---EEECSCT
T ss_pred HHHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceE----E---EEeCCCh
Confidence 54322111222 33222211100 00000000 011112222233321 1110000000 0 0000000
Q ss_pred --cCccccccchhhHHHh---hhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 189 --LGKMDEANDSGLAAYV---AGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 189 --~~~~~~~~~~~~~~~~---~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
..........+. ..+ ...+++.+.|+.++++|+.+ ++||+++.+.+.++++.+.++|+|+|+++.++|+.
T Consensus 153 ~~~~~a~~~~~~G~-d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~ 231 (404)
T 1eep_A 153 DTIERVEELVKAHV-DILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTT 231 (404)
T ss_dssp THHHHHHHHHHTTC-SEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHH
T ss_pred hHHHHHHHHHHCCC-CEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCc
Confidence 000000000000 000 01234556789999999999 89999999999999999999999999996555431
Q ss_pred ---CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HH
Q 017492 260 ---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YS 315 (370)
Q Consensus 260 ---~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~ 315 (370)
...+.+.+..+.++.+.+. .++|||++|||+++.|+.|++++|||+|++||+|+ ++
T Consensus 232 ~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g 311 (404)
T 1eep_A 232 RIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVG 311 (404)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC---
T ss_pred cccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCC
Confidence 1235567788888877553 37999999999999999999999999999999994 33
Q ss_pred HHh-------------------------cCHHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 316 LAA-------------------------EGEKG-------VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 316 ~~~-------------------------~G~~~-------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+.. +|.++ |.++++.+.+||+..|.++|+++++||++..+..
T Consensus 312 ~~~~g~~~~g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~~ 385 (404)
T 1eep_A 312 MGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFV 385 (404)
T ss_dssp ---------------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEE
T ss_pred CCCHHHHhhccccchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcEE
Confidence 321 23333 8899999999999999999999999999876654
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=219.92 Aligned_cols=252 Identities=21% Similarity=0.280 Sum_probs=187.7
Q ss_pred HhhcccceeeecccCC--CCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH
Q 017492 40 RNAFSRILFRPRILID--VSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (370)
Q Consensus 40 ~~~~~~i~l~pr~l~~--~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee 116 (370)
-..||++.|+|+ +.+ .+++|++|+|. +..+..||+.+||.+.+ +..+|.+.++.|...++.. +.++++
T Consensus 12 ~~~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~--~~s~e~ 82 (361)
T 3khj_A 12 GLTFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMES 82 (361)
T ss_dssp CCCGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECS--SSCHHH
T ss_pred CCCcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEec--CCCHHH
Confidence 348999999998 543 46899999998 79999999999998764 5688887776665555542 455554
Q ss_pred Hh----c---cCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccccc
Q 017492 117 VA----S---TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (370)
Q Consensus 117 i~----~---~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (370)
+. + ....+...++... + .+.++.+.++|++.+.|+ ++.
T Consensus 83 ~~~~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld--~a~---------------------------- 127 (361)
T 3khj_A 83 QVNEVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLD--SAH---------------------------- 127 (361)
T ss_dssp HHHHHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEEC--CSC----------------------------
T ss_pred HHHHHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEe--CCC----------------------------
Confidence 32 1 1123556666532 2 566778888999988764 211
Q ss_pred CccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCc
Q 017492 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYV 263 (370)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~ 263 (370)
.++....+.++++++.+++||+++.+.++++++.+.++|+|+|.++.++|.. ...+
T Consensus 128 ------------------G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g 189 (361)
T 3khj_A 128 ------------------GHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG 189 (361)
T ss_dssp ------------------CSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBC
T ss_pred ------------------CCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCC
Confidence 1122245678999998899999999999999999999999999996554421 1345
Q ss_pred cchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh----
Q 017492 264 PATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---- 318 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~---- 318 (370)
.+.+..+.++.+... .++|||++|||+++.|+.|++++|||+|++|++|+ |+++.
T Consensus 190 ~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~ 269 (361)
T 3khj_A 190 VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAM 269 (361)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC---------
T ss_pred CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHH
Confidence 677888888865432 27999999999999999999999999999999874 33221
Q ss_pred ----------cC-------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 ----------EG-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 ----------~G-------~~----------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.+ ++ .+.+++.++..+||..|.++|+.+|+||+..
T Consensus 270 ~~~~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 270 KSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp ------------------------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hccchhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence 01 12 2778899999999999999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=209.33 Aligned_cols=242 Identities=19% Similarity=0.189 Sum_probs=182.3
Q ss_pred CccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCC---------------------------C
Q 017492 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------------------------T 111 (370)
Q Consensus 59 vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~---------------------------~ 111 (370)
+|++++++|.+++.||++||+..+ .+....+.+.+.|+.+++..+. +
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~~~------~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGVLC------STEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCCCC------CCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 589999999999999999985422 1345567789999988664221 1
Q ss_pred CCHH----HHhcc-C--CCceEEEEeecCChHHHHHHHHHHHHcCCc---EEEEecCCCCCcchhHHhhhhcCCCCcccc
Q 017492 112 SSVE----EVAST-G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK---AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (370)
Q Consensus 112 ~~~e----ei~~~-~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~---ai~itvd~p~~g~r~~d~~~~~~~p~~~~~ 181 (370)
...+ ++.+. . ..+.+.||. ..+.+...+.+++++++|++ ++.||+.||.. .+.+
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~-------------- 139 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKP-------------- 139 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCC--------------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCch--------------
Confidence 1122 23322 1 257888986 45778888899999999999 99999999874 1100
Q ss_pred ccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcC-ccEEEEcc
Q 017492 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAG-AAGIIVSN 254 (370)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG-~d~I~vs~ 254 (370)
. + . .+++..++.++++|+.+++||++|... +.++ ++.+.++| +|+|+++|
T Consensus 140 -~-------------------~-g--~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 140 -Q-------------------V-A--YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp -C-------------------G-G--GSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred -h-------------------h-c--CCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 0 0 0 133345788999999999999999863 4445 78889999 99999988
Q ss_pred CCcc--CCC-----------------Cc----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 255 HGAR--QLD-----------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 255 ~gg~--~~~-----------------~~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+.++ ..+ .+ +..++.+.++++.+ +++|||++|||++++|+.+++++|||+|++||+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~ 275 (314)
T 2e6f_A 197 SVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTA 275 (314)
T ss_dssp CEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHH
T ss_pred CCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 6531 011 11 22457788888877 589999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 312 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 312 ~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+++ +|+ .+++.+.++++.+|...|+++++|+++..
T Consensus 276 ~l~----~~p----~~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 310 (314)
T 2e6f_A 276 LQE----EGP----GIFTRLEDELLEIMARKGYRTLEEFRGRV 310 (314)
T ss_dssp HHH----HCT----THHHHHHHHHHHHHHHHTCCSSTTTTTCC
T ss_pred hHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHHhchH
Confidence 986 244 37789999999999999999999998754
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=238.31 Aligned_cols=304 Identities=19% Similarity=0.179 Sum_probs=209.1
Q ss_pred hHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCC--CCCCccceeEcCeeecCceeecccccccc
Q 017492 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKM 84 (370)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~--~~~vd~s~~l~g~~l~~Pi~iapm~~~~~ 84 (370)
+..+++.|+..- ...|.-+. . .+-.+....|+++.+.+..+.. ++++|+++ ++..||+++||+++.+
T Consensus 795 i~~l~~~~~~g~-~~~~~~~~---~--~~~~~~~~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Gal 863 (1479)
T 1ea0_A 795 IHTLQQAVTNDS-YTTFKKYS---E--QVNKRPPMQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGAL 863 (1479)
T ss_dssp HHHHHHHHHHTC-HHHHHHHH---H--HHHTSCCCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTB
T ss_pred HHHHHHHHHhCC-HHHHHHHH---h--hhccCCCCchhhhhhccCCCCCCCcccccccc-----cccCCeEecCcccccc
Confidence 566777776652 22232221 1 1111344579999998877754 46777766 5689999999998754
Q ss_pred cCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhcc--C--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 85 AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST--G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 85 ~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~--~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
.++.+.+||++|+++|+.+.+++. ..+.++.... . ....+.|+.. .........+ ..++++.|.+.--
T Consensus 864 -S~ea~~aLA~Aa~~aGg~~~tGeG-g~~pe~~~~~~~g~~~~~~IrQ~as-g~FGVn~~~l-----~~a~~ieIKigQG 935 (1479)
T 1ea0_A 864 -SPEAHGTLNVAMNRIGAKSDSGEG-GEDPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-----NQCRELEIKVAQG 935 (1479)
T ss_dssp -CHHHHHHHHHHHHHTTCEEECCTT-CCCGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH-----TSCSEEEEECCCT
T ss_pred -CHHHHHHHHHHHHHcCCeeEcCCC-ccCHHHhhhccccchhhhhhhhhcC-CCCCcChHHc-----cccchHHHHHhcc
Confidence 567888999999999999888876 3455544321 1 1234677753 2223222222 3567777776321
Q ss_pred CC--------cchhHHhhhhc-CCCCccccccccccccCccccccchhhHHHhhhcCCCCc-cH----HHHHHHHHhc-C
Q 017492 161 RL--------GRREADIKNRF-TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-K 225 (370)
Q Consensus 161 ~~--------g~r~~d~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~ir~~~-~ 225 (370)
.. +.+..+..... ..+.+ ...+++..+.++ ++ +.|+++|+.+ +
T Consensus 936 AKpG~GG~Lp~~kv~~~IA~~R~~~~G----------------------v~lisP~~~~d~~s~edl~~~I~~Lk~~~~~ 993 (1479)
T 1ea0_A 936 AKPGEGGQLPGFKVTEMIARLRHSTPG----------------------VMLISPPPHHDIYSIEDLAQLIYDLKQINPD 993 (1479)
T ss_dssp TSTTTCCEECGGGCCHHHHHHHTCCTT----------------------CCEECCSSCTTCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCHHHHHHHHHHHcCCCCC----------------------CCccCCCCCcCcCCHHHHHHHHHHHHHhCCC
Confidence 11 01110000000 00100 011222233343 34 4589999988 8
Q ss_pred CcEEEEecC---CHHHHHHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEEEecCC
Q 017492 226 LPILVKGVL---TAEDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGV 289 (370)
Q Consensus 226 ~Pv~vK~v~---~~~~a~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GGI 289 (370)
+||++|++. ...+|+.+.++|+|+|+|+||+ |+. .+++.|+...|+++.+.+ ++++|||++|||
T Consensus 994 ~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGI 1073 (1479)
T 1ea0_A 994 AKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGL 1073 (1479)
T ss_dssp CEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSC
T ss_pred CCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCC
Confidence 999999986 3678999999999999999994 432 246788889999998875 347999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHc
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMALS 342 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~~~~~---------------------------~G~~~v~~~l~~l~~el~~~m~~~ 342 (370)
+++.|++|++++||++|++||+||++++| +|.++|.++++.+.+||+.+|..+
T Consensus 1074 rtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~gg~e~V~n~l~~l~~ELr~~Ma~l 1153 (1479)
T 1ea0_A 1074 KTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGL 1153 (1479)
T ss_dssp CSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998754 368899999999999999999999
Q ss_pred CCCChhhhc
Q 017492 343 GCRSLKEIT 351 (370)
Q Consensus 343 G~~~l~~l~ 351 (370)
|+++++||+
T Consensus 1154 G~~si~eL~ 1162 (1479)
T 1ea0_A 1154 GFRSLNEVI 1162 (1479)
T ss_dssp TCSCSGGGT
T ss_pred CCCCHHHHh
Confidence 999999994
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=203.45 Aligned_cols=241 Identities=20% Similarity=0.203 Sum_probs=180.9
Q ss_pred cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC-------C--------------------
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-------S-------------------- 113 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~-------~-------------------- 113 (370)
++++++|.+++.||++||... + .+....+.+.+.|..+++..+.+. .
T Consensus 2 l~~~i~g~~l~npv~~Aag~~----~--~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVH----C--MTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSS----C--SSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCCCC----C--CCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 679999999999999997331 1 255677889999998887543211 0
Q ss_pred HH----HHhc---cC--CCceEEEEeecCChHHHHHHHHHHHHcCCc-EEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 114 VE----EVAS---TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 114 ~e----ei~~---~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~-ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
.+ ++.. .. ..+.+.||. ..+.+...+.+++++++|++ ++.||+.||.. .+.+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~---------------~ 138 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEP---------------Q 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCC---------------C
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCcc---------------c
Confidence 22 2221 22 356788986 46778888899999999999 99999999874 1100 0
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCc
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGA 257 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg 257 (370)
+. .+++..++.++++|+.+++||++|... +.++ ++.+.++|+|+|+++|+.+
T Consensus 139 --------------------~g--~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~ 196 (311)
T 1jub_A 139 --------------------LA--YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp --------------------GG--GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred --------------------cc--CCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 00 133345788999999999999999874 3333 7788899999999988742
Q ss_pred --cCCC--------------C---cc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 258 --RQLD--------------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 258 --~~~~--------------~---~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.+ + ++ ..++.+.++++.+++++|||++|||++++|+.+++++|||+|++||++++
T Consensus 197 ~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 1111 0 22 23567778877765589999999999999999999999999999999996
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+|+ .+++.+.++++.+|...|++|++|+++..
T Consensus 277 ----~~p----~~~~~i~~~l~~~l~~~g~~si~e~~g~~ 308 (311)
T 1jub_A 277 ----EGP----AIFDRIIKELEEIMNQKGYQSIADFHGKL 308 (311)
T ss_dssp ----HCT----HHHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred ----cCc----HHHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 244 37789999999999999999999998753
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=211.67 Aligned_cols=256 Identities=20% Similarity=0.245 Sum_probs=188.0
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
..||++.|+|..- .+.+++|++|.|. ...+..||+.|||++.+ +..+|.+.++.|...++.. +.+.|++.
T Consensus 14 ~~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs------~~~lA~avA~aGGlg~i~~--~~s~e~~~ 85 (366)
T 4fo4_A 14 LTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHK--NMSIEQQA 85 (366)
T ss_dssp CCGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CCcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCC------hHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence 4799999999732 2345899999997 58999999999998654 5689988888887767743 35666543
Q ss_pred ccC----C-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 119 STG----P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 119 ~~~----~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
+.. . .+..+.+-.... ....+.++.+.++|++.+.|+. ..
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~-~~~~~~~~~lieaGvd~I~idt--a~-------------------------------- 130 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAA-PGNEERVKALVEAGVDVLLIDS--SH-------------------------------- 130 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSC-TTCHHHHHHHHHTTCSEEEEEC--SC--------------------------------
T ss_pred HHHHHHHhcCceeEEEEeccC-hhHHHHHHHHHhCCCCEEEEeC--CC--------------------------------
Confidence 211 1 222333322222 1234567778889999887752 10
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccch
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPAT 266 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~ 266 (370)
.++....+.++++++.+ ++||+++.+.++++|+.+.++|+|+|+++.++|.. ...+.+.
T Consensus 131 --------------G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~ 196 (366)
T 4fo4_A 131 --------------GHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ 196 (366)
T ss_dssp --------------TTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred --------------CCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccch
Confidence 01112456789999988 78999998999999999999999999995433321 1346778
Q ss_pred HHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh-----c-
Q 017492 267 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----E- 319 (370)
Q Consensus 267 ~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~-----~- 319 (370)
+..+.++.+.+. .++|||++|||+++.|+.|+|++|||+|++|++|+. +++. .
T Consensus 197 ~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~ 276 (366)
T 4fo4_A 197 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKG 276 (366)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC-
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcc
Confidence 888888887542 379999999999999999999999999999998852 1110 0
Q ss_pred --------C-------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 320 --------G-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 320 --------G-------~~----------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+ ++ .+.+++.++..+||..|.++|+.+|+||+..
T Consensus 277 ~~~ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~ 335 (366)
T 4fo4_A 277 SSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 335 (366)
T ss_dssp --------------CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cccchhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence 0 01 2778999999999999999999999999864
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=207.74 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=173.7
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- ...+++|++|.|- ...+..||+.|||++.+ +-.||.+.+++|...+++. ..++|++++
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs------~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTC------SSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcC------cHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 799999999643 3447899999985 47899999999998543 4479999999999999974 566776542
Q ss_pred c-------CC----CceE--EEEeec-CChHHH------------------------------HHHHHHHHHcCCcEEEE
Q 017492 120 T-------GP----GIRF--FQLYVY-KDRNVV------------------------------AQLVRRAERAGFKAIAL 155 (370)
Q Consensus 120 ~-------~~----~~~~--~Qly~~-~d~~~~------------------------------~~~l~ra~~~G~~ai~i 155 (370)
. .. .|+. .+|++. .+.+.. .+.++.+.++|++.+++
T Consensus 83 ~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvl 162 (400)
T 3ffs_A 83 EVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVL 162 (400)
T ss_dssp HHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEE
Confidence 1 11 1221 233310 000000 11111122222222211
Q ss_pred ecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC
Q 017492 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 235 (370)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~ 235 (370)
+. ..+++...++.++++++.+++||+++.+.+
T Consensus 163 dt------------------------------------------------a~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t 194 (400)
T 3ffs_A 163 DS------------------------------------------------AHGHSLNIIRTLKEIKSKMNIDVIVGNVVT 194 (400)
T ss_dssp CC------------------------------------------------SCCSBHHHHHHHHHHHTTCCCEEEEEEECS
T ss_pred eC------------------------------------------------CCCCcccHHHHHHHHHhcCCCeEEEeecCC
Confidence 10 011222346789999998899999999999
Q ss_pred HHHHHHHHHcCccEEEEccCCcc-----CC-CCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 236 AEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~-----~~-~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.++|+.+.++|+|+|++++.+|+ .. ..+.+.+..+.++.+.+. .++|||++|||+++.|+.+++++||++|++
T Consensus 195 ~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 195 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999543332 11 245678889999988753 379999999999999999999999999999
Q ss_pred cHHHH--------------------HHHHhc--------------C-------HHH----------HHHHHHHHHHHHHH
Q 017492 309 GRPVV--------------------YSLAAE--------------G-------EKG----------VRRVLEMLREEFEL 337 (370)
Q Consensus 309 gr~~l--------------------~~~~~~--------------G-------~~~----------v~~~l~~l~~el~~ 337 (370)
|++|+ |+++.. + ++| +.+++.++..+||.
T Consensus 275 Gt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~ 354 (400)
T 3ffs_A 275 GSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRS 354 (400)
T ss_dssp CGGGTTBTTSSCCEEESSSSEEEC-----------------------------------CEECCBCHHHHHHHHHHHHHH
T ss_pred ChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHHHHHHHH
Confidence 99884 343210 0 122 77889999999999
Q ss_pred HHHHcCCCChhhhccc
Q 017492 338 AMALSGCRSLKEITRD 353 (370)
Q Consensus 338 ~m~~~G~~~l~~l~~~ 353 (370)
.|.++|+.+|+||+..
T Consensus 355 ~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 355 CMGYLGSASIEELWKK 370 (400)
T ss_dssp HHHHTTCSSHHHHHHH
T ss_pred hhhhcCcccHHHHHhC
Confidence 9999999999999864
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=232.04 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=193.0
Q ss_pred ecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC-------CC---------
Q 017492 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS-------TS--------- 112 (370)
Q Consensus 50 pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~-------~~--------- 112 (370)
|.....++++|++++++|.++++||++|||++.. +..+++.+.+.|..+++. +.. +.
T Consensus 522 p~~~~ev~~v~ls~~~~G~~~~nPv~lAa~~~~~------~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~ 595 (1025)
T 1gte_A 522 PLFYTPVDLVDISVEMAGLKFINPFGLASAAPTT------SSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTT 595 (1025)
T ss_dssp CCCCCGGGGCCCCEEETTEEESSSEEECSSGGGS------SHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCT
T ss_pred cccccccccccceeeeccccccCcccccCCCCCC------CHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccc
Confidence 3333466889999999999999999999998753 567788888889888761 111 00
Q ss_pred ---------------------C-------HHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCc
Q 017492 113 ---------------------S-------VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (370)
Q Consensus 113 ---------------------~-------~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g 163 (370)
. ++++.+..+ .+.++|++...+.+...+.+++++++|+++|.||++||..
T Consensus 596 ~g~~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~- 674 (1025)
T 1gte_A 596 SGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG- 674 (1025)
T ss_dssp TCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-
T ss_pred cccccCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-
Confidence 1 123333344 5789999877889999999999999999999999999963
Q ss_pred chhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC----HHHH
Q 017492 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDA 239 (370)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a 239 (370)
.+.++ + +..+. .++.+.++.++++++.+++||++|+..+ .+.|
T Consensus 675 ~~~~~----~---------------------------G~~~~--~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a 721 (1025)
T 1gte_A 675 MGERG----M---------------------------GLACG--QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIA 721 (1025)
T ss_dssp CC------------------------------------SBGG--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHH
T ss_pred CCCCC----c---------------------------ccccc--cCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHH
Confidence 11100 0 00011 2455678899999999999999999754 3458
Q ss_pred HHHHHcCccEEEEccC--------------------CccCCC--Cccch----HHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 240 RIAVQAGAAGIIVSNH--------------------GARQLD--YVPAT----IMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~--------------------gg~~~~--~~~~~----~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.+.++|+|+|+++|+ |++... .+++. ++.+.++++.+ +++|||++|||++++
T Consensus 722 ~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~s~~ 800 (1025)
T 1gte_A 722 RAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL-PGFPILATGGIDSAE 800 (1025)
T ss_dssp HHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCCSHH
T ss_pred HHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHc-CCCCEEEecCcCCHH
Confidence 9999999999999873 222111 12332 46788888876 479999999999999
Q ss_pred HHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 294 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|+.++|++|||+|++||++++ .+. .+++.+.++|+.+|...|+.+++++..
T Consensus 801 da~~~l~~Ga~~v~vg~~~l~----~~~----~~~~~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 801 SGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp HHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHHHHHHTTCGGGTTSBT
T ss_pred HHHHHHHcCCCEEEEeecccc----CCc----cHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 999999999999999999986 133 367889999999999999999999986
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=228.52 Aligned_cols=284 Identities=18% Similarity=0.139 Sum_probs=197.1
Q ss_pred hHhhcccceeeecccCC--CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH
Q 017492 39 NRNAFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (370)
Q Consensus 39 n~~~~~~i~l~pr~l~~--~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee 116 (370)
..-.|+++.+.+..+.. ++++|+++ .+..||+++||+++. ..++.+.+||.+|+++|+.+.+++.. .+.+.
T Consensus 838 ~~~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gs-lS~ea~~aLA~Aas~aGg~~~tGeGg-~~pe~ 910 (1520)
T 1ofd_A 838 PVTALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGA-LSREAHETLAIAMNRLGAKSNSGEGG-EDVVR 910 (1520)
T ss_dssp CSCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTT-SCHHHHHHHHHHHHHHTCBCEECTTC-CCGGG
T ss_pred CCcchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCccc-ccHHHHHHHHHHHHHcCCceEeCCCC-CCHHH
Confidence 34578888888776653 45677665 568999999999875 34567889999999999999998763 44444
Q ss_pred Hh-----------ccCC-----------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC--------cchh
Q 017492 117 VA-----------STGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL--------GRRE 166 (370)
Q Consensus 117 i~-----------~~~~-----------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~--------g~r~ 166 (370)
.. ..+| ...+.|+-. .........+. .++.+.|.+.--.. +.+.
T Consensus 911 ~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~s-g~FGVn~~~l~-----~ad~IeIKi~QGAKpG~GG~Lp~~kV 984 (1520)
T 1ofd_A 911 YLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIAS-GRFGVTPEYLM-----SGKQLEIKMAQGAKPGEGGQLPGKKV 984 (1520)
T ss_dssp GSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECT-TCTTCCHHHHH-----HCSEEEEECCCTTSTTSCCEECGGGC
T ss_pred HHhhhccccccccccccccccccCcchHHHHHHHhcC-CCCccChhhcc-----chHHHHHHHhccCCCCCCCCCCHHHH
Confidence 42 0111 135677632 11222222221 26677776532110 0000
Q ss_pred HH-hhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc-cH----HHHHHHHHhc-CCcEEEEecC---CH
Q 017492 167 AD-IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL---TA 236 (370)
Q Consensus 167 ~d-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~ir~~~-~~Pv~vK~v~---~~ 236 (370)
.+ +..--..+++ ...+++..++++ ++ +.|+++|+.+ ++||++|++. ..
T Consensus 985 ~~~iA~~R~~~~G----------------------v~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~ 1042 (1520)
T 1ofd_A 985 SEYIAMLRRSKPG----------------------VTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIG 1042 (1520)
T ss_dssp CHHHHHHHTSCTT----------------------CCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHH
T ss_pred HHHHHHHcCCCCC----------------------CCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChH
Confidence 00 0000000110 111222233344 33 4689999998 8999999985 35
Q ss_pred HHHHHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHhCC
Q 017492 237 EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGA 303 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GGI~~~~dv~kalalGA 303 (370)
.+|+.+.++|||+|+|+||+ |+. .+++.|+...|+++.+.+ ++++|||++|||+++.|++|++++||
T Consensus 1043 ~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGA 1122 (1520)
T 1ofd_A 1043 TIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGA 1122 (1520)
T ss_dssp HHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCC
Confidence 78999999999999999995 432 246788888999998865 34799999999999999999999999
Q ss_pred CEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccce
Q 017492 304 SGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHI 355 (370)
Q Consensus 304 d~V~igr~~l~~~~~---------------------------~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~-~~~l 355 (370)
++|++||+||+++.| .|+++|.++++.+.+||+.+|..+|+++++||+ +..+
T Consensus 1123 daV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~dl 1202 (1520)
T 1ofd_A 1123 EEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDL 1202 (1520)
T ss_dssp SEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred CeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcceE
Confidence 999999999998754 268899999999999999999999999999995 4444
Q ss_pred ee
Q 017492 356 VT 357 (370)
Q Consensus 356 ~~ 357 (370)
..
T Consensus 1203 l~ 1204 (1520)
T 1ofd_A 1203 LK 1204 (1520)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=196.66 Aligned_cols=252 Identities=17% Similarity=0.124 Sum_probs=178.9
Q ss_pred eecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC-----------------
Q 017492 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----------------- 110 (370)
Q Consensus 49 ~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~----------------- 110 (370)
.|++-..+++.|++++++|.+|+.||++|+-... .+....+.+..+|..+++. +..
T Consensus 25 ~~~~~~~~~~~~L~~~~~Gl~~~NPv~lAAG~~~------~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~ 98 (354)
T 4ef8_A 25 TGGQQMGRGSMSLQVNLLNNTFANPFMNAAGVMC------TTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPL 98 (354)
T ss_dssp ---------CCCCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETT
T ss_pred CchhhcCCCCCCcceEECCEECCCCCEeccCCCC------CCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecch
Confidence 3455456788999999999999999999984322 2456778888888766542 111
Q ss_pred ---------CCCHH----HHhcc--C-CCceEEEEeecCChHHHHHHHHHHH---HcCCcEEEEecCCCCCcchhHHhhh
Q 017492 111 ---------TSSVE----EVAST--G-PGIRFFQLYVYKDRNVVAQLVRRAE---RAGFKAIALTVDTPRLGRREADIKN 171 (370)
Q Consensus 111 ---------~~~~e----ei~~~--~-~~~~~~Qly~~~d~~~~~~~l~ra~---~~G~~ai~itvd~p~~g~r~~d~~~ 171 (370)
+..++ ++.+. . ..|.++||+ ..+.+...+.+++++ +.|+++|.||+.||..
T Consensus 99 ~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~--------- 168 (354)
T 4ef8_A 99 GSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNV--------- 168 (354)
T ss_dssp EEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS---------
T ss_pred hhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC---------
Confidence 11233 23322 1 257889987 567777888888888 5799999999999973
Q ss_pred hcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC--HHH----HHHHHHc
Q 017492 172 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AED----ARIAVQA 245 (370)
Q Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~--~~~----a~~a~~a 245 (370)
| + .+. ++ .+++...+.++++++.+++||++|+... .++ ++.+.++
T Consensus 169 ----~-g--g~~--------------------l~--~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~ 219 (354)
T 4ef8_A 169 ----P-G--KPQ--------------------VA--YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEF 219 (354)
T ss_dssp ----T-T--SCC--------------------GG--GSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC
T ss_pred ----C-C--chh--------------------hc--cCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhC
Confidence 1 0 000 01 2344567889999999999999999743 322 3444578
Q ss_pred C-ccEEEEccCCc---------c-------CCCC---c----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh
Q 017492 246 G-AAGIIVSNHGA---------R-------QLDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 246 G-~d~I~vs~~gg---------~-------~~~~---~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal 301 (370)
| +|+|+++|+.+ + +..+ | +..++.+.++++.. .++|||++|||++++|+.+++.+
T Consensus 220 Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~a 298 (354)
T 4ef8_A 220 PKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLA 298 (354)
T ss_dssp TTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHH
T ss_pred CCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHc
Confidence 7 99999987531 1 0111 2 23567888888773 47999999999999999999999
Q ss_pred CCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 302 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 302 GAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
|||+||+||++++. |+. +++.+.++|+.+|...|+++++|+++..
T Consensus 299 GAd~V~vgra~l~~----GP~----~~~~i~~~l~~~m~~~G~~si~el~G~~ 343 (354)
T 4ef8_A 299 GASMVQVGTALQEE----GPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp TEEEEEECHHHHHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred CCCEEEEhHHHHHh----CHH----HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999873 553 6788999999999999999999999763
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=203.00 Aligned_cols=242 Identities=20% Similarity=0.204 Sum_probs=180.4
Q ss_pred eecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC---------HHHHhccCCCceEEEEeecCChHHHH
Q 017492 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS---------VEEVASTGPGIRFFQLYVYKDRNVVA 139 (370)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~---------~eei~~~~~~~~~~Qly~~~d~~~~~ 139 (370)
+++.||++|||++.+ +..+.+.+++.|..++++++.+.. .+.+......+.++||+ ..+++...
T Consensus 2 ~l~nri~~APM~~~t------~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~-g~~~~~~~ 74 (318)
T 1vhn_A 2 SLEVKVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELS 74 (318)
T ss_dssp ---CEEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHH
T ss_pred ccCCCEEECCCCCCC------cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhhhCcCCCeEEEEeC-CCCHHHHH
Confidence 578899999998653 578999999999998888874311 12221111268999999 77889999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHH
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (370)
+.+++++++ ++.|.||++||....|. .++ +..+ ..++.+.++.+++
T Consensus 75 ~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~---------------------------G~~l--~~~~~~~~eiv~~ 120 (318)
T 1vhn_A 75 EAARILSEK-YKWIDLNAGCPVRKVVK----EGA---------------------------GGAL--LKDLRHFRYIVRE 120 (318)
T ss_dssp HHHHHHTTT-CSEEEEEECCCCHHHHH----TTC---------------------------GGGG--GSCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCEEEEECCCCcHhcCC----CCc---------------------------ccch--hhCHHHHHHHHHH
Confidence 999999999 99999999999742221 011 0011 1356778999999
Q ss_pred HHHhcCCcEEEEec---C---CHHHHHHHHHcCccEEEEccCCccCCC--CccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 220 LQTITKLPILVKGV---L---TAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 220 ir~~~~~Pv~vK~v---~---~~~~a~~a~~aG~d~I~vs~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++.+++||++|.. . +.+.++.+.++|+|+|+| ||+++.+ .+++.++.+.++++ ++||+++|||++
T Consensus 121 v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v--~g~~~~~~~~~~~~~~~i~~i~~----~ipVi~~GgI~s 194 (318)
T 1vhn_A 121 LRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI--HTRTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFT 194 (318)
T ss_dssp HHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE--ESSCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCS
T ss_pred HHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEE--cCCCccccCCCCcCHHHHHHHHc----CCeEEEECCcCC
Confidence 99999999999953 2 136799999999999999 4554332 35556665555543 799999999999
Q ss_pred HHHHHHHHH-hCCCEEEEcHHHHH-----HHHhc----CH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcccceee
Q 017492 292 GTDVFKALA-LGASGIFIGRPVVY-----SLAAE----GE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIVT 357 (370)
Q Consensus 292 ~~dv~kala-lGAd~V~igr~~l~-----~~~~~----G~---~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~~~~l~~ 357 (370)
++|+.++++ .|||+|++||+++. ..... |. .++.++++.+.++++..|.+.|.. .+.+++++..+.
T Consensus 195 ~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 274 (318)
T 1vhn_A 195 PEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGY 274 (318)
T ss_dssp HHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 999999999 79999999998643 32222 42 467789999999999999999975 788888886553
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=193.04 Aligned_cols=243 Identities=19% Similarity=0.198 Sum_probs=173.0
Q ss_pred CCCCccceeEcCeeecCceeecc-cccccccCChhhHHHHHHHHHcCCceee-------------------------cCC
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAASAAGTIMTL-------------------------SSW 109 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iap-m~~~~~~~~~~e~~la~aa~~~G~~~~~-------------------------s~~ 109 (370)
.+++|++++|+|.+++.||++|| |.+.+ + .+.+.+.+.|..+++ +..
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aag~~~~~------~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~ 74 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPASGCFGFG------E-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAI 74 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTTSSTTS------T-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECC
T ss_pred CCCCccceEECCEECCCCcEECCCCCCCC------H-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCccccccc
Confidence 36889999999999999999999 54432 1 123333333333333 111
Q ss_pred --CCCCHHHH--------hccC-CCceEEEEeecCChHHHHHHHHHHHH-cCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017492 110 --STSSVEEV--------ASTG-PGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (370)
Q Consensus 110 --~~~~~eei--------~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~d~~~~~~~p~ 177 (370)
.+...++. .+.. ..+.++||.. .+.+...+.++++++ +|++++.||+.||..-.| +.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g------~~---- 143 (311)
T 1ep3_A 75 GLQNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------GQ---- 143 (311)
T ss_dssp CCCBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT------TE----
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc------hh----
Confidence 12233332 2213 3578999974 457777888888888 999999999998862100 00
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC---C-HHHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~---~-~~~a~~a~~aG~d~I~vs 253 (370)
.+ . .++.+..+.++++++.+++||++|... + .+.++.+.++|+|+|.++
T Consensus 144 ------------------------~~-g--~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 144 ------------------------AF-G--TDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp ------------------------EG-G--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEEC
T ss_pred ------------------------hh-c--CCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEe
Confidence 00 0 134456788999999989999999863 3 455899999999999998
Q ss_pred c-------CCccCC---------CCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 254 N-------HGARQL---------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 254 ~-------~gg~~~---------~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
| |+.+.. ..+++ .++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++
T Consensus 197 ~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l 274 (311)
T 1ep3_A 197 NTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF 274 (311)
T ss_dssp CCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHH
T ss_pred CCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 7 321110 11222 245667777665 8999999999999999999999999999999998
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 314 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
. +++ .++.++++++.+|...|+++++|+++..
T Consensus 275 ~-----~p~----~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 306 (311)
T 1ep3_A 275 A-----DPF----VCPKIIDKLPELMDQYRIESLESLIQEV 306 (311)
T ss_dssp H-----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred c-----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 6 343 5678899999999999999999998753
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=199.25 Aligned_cols=143 Identities=22% Similarity=0.335 Sum_probs=118.6
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHHHHHHHHHcc-CCCc
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GRIP 282 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ip 282 (370)
...++.++++++.+ ++||+...+.+.+.++.++++|||+|.|.-.+|+ ....|.|.+.++.++.++.+ ..+|
T Consensus 307 ~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vp 386 (556)
T 4af0_A 307 VYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIP 386 (556)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCC
Confidence 34677899999998 7999999999999999999999999999866563 12346788889988887664 3699
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------------------------
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------ 318 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------------ 318 (370)
||+||||++..|++|||++|||+||+|+.|- |+++.
T Consensus 387 vIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~ 466 (556)
T 4af0_A 387 CIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNA 466 (556)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCS
T ss_pred EEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCccccccccccccc
Confidence 9999999999999999999999999999772 11110
Q ss_pred ---------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 ---------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 ---------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+++.+|..+||..|.++|+++|+||+..
T Consensus 467 s~dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~ 523 (556)
T 4af0_A 467 ATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC 523 (556)
T ss_dssp SEEECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred chhhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence 010 02788999999999999999999999999974
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=186.74 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=176.2
Q ss_pred CCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC-------------------------
Q 017492 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST------------------------- 111 (370)
Q Consensus 58 ~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~------------------------- 111 (370)
..|++++++|.+++.||++|+-... .+....+.+..+|..+++. +...
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAaG~~~------~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~ 108 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAAGVYC------MTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP 108 (345)
T ss_dssp -CCCCEEETTEEESCSEEECTTSSC------SSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred cCCcCeEECCEECCCCCEEcCCCCC------CCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence 3689999999999999999963211 1446778888888877663 2110
Q ss_pred -CCH----HHHhc----cCCCceEEEEeecCChHHHHHHHHHHHHcCCc-EEEEecCCCCCcchhHHhhhhcCCCCcccc
Q 017492 112 -SSV----EEVAS----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (370)
Q Consensus 112 -~~~----eei~~----~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~-ai~itvd~p~~g~r~~d~~~~~~~p~~~~~ 181 (370)
..+ +++.+ ....|.++||. ..+.+...+.+++++++|++ +|.||+.||.. | +.
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~-------------~-G~-- 171 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNV-------------P-GX-- 171 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCS-------------T-TC--
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCc-------------C-Cc--
Confidence 112 22332 12257899997 56778888889999888987 99999999963 1 00
Q ss_pred ccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC--CH-HHHHHHHHcCccEEEEcc---C
Q 017492 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TA-EDARIAVQAGAAGIIVSN---H 255 (370)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~--~~-~~a~~a~~aG~d~I~vs~---~ 255 (370)
.. ++ .+++...+.++++++.+++||++|+.. +. +.++.+.++|+++|.+.| .
T Consensus 172 ~~--------------------l~--~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt 229 (345)
T 3oix_A 172 PQ--------------------IA--YDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINS 229 (345)
T ss_dssp CC--------------------GG--GCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCC
T ss_pred hh--------------------hc--CCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecc
Confidence 00 00 234445678999999999999999974 33 446777888887765432 1
Q ss_pred --------Ccc-CC--------CCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 256 --------GAR-QL--------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 256 --------gg~-~~--------~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+ .+ ..|++ +++.+.++++.+++++|||++|||++++|+.+++.+|||+|++||+|++
T Consensus 230 ~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~ 309 (345)
T 3oix_A 230 IGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQ 309 (345)
T ss_dssp EEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHh
Confidence 111 01 11233 3567888888776689999999999999999999999999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
. |+. +++.+.++|+.+|...|+++++|+++.
T Consensus 310 ~----gP~----~~~~i~~~L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 310 E----GPQ----IFKRITKELXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp H----CTH----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred c----ChH----HHHHHHHHHHHHHHHcCCCCHHHHHhH
Confidence 3 553 678899999999999999999999875
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-21 Score=185.40 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCCccHHHHHHHHHhc---------CCcEEEEecC--CH----HHHHHHHHcCccEEEEccCC-ccC---------CCC-
Q 017492 209 DRSLSWKDVKWLQTIT---------KLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ---------LDY- 262 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~---------~~Pv~vK~v~--~~----~~a~~a~~aG~d~I~vs~~g-g~~---------~~~- 262 (370)
++.+.++.++++|+.+ ++||++|... +. +.++.+.++|+|+|+++|++ +++ ..+
T Consensus 186 ~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg 265 (336)
T 1f76_A 186 YGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGG 265 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSE
T ss_pred CHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCC
Confidence 3456789999999988 8999999874 33 33788999999999999874 222 011
Q ss_pred --cc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 263 --VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 263 --~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|+ .+++.+.++++.+++++|||++|||++++|+.++|++|||+|++||++++
T Consensus 266 ~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 266 LSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 21 23467788888876689999999999999999999999999999999987
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=188.92 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=164.4
Q ss_pred CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceee-cCCCC-----------------------
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST----------------------- 111 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-s~~~~----------------------- 111 (370)
.+.+.++|+++|.+++.||++|+=. +.+++ ......++|..++. ++...
T Consensus 79 ~~~~~l~v~~~Gl~f~NPvglAAG~-----dk~~~--~~~~l~~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~ 151 (415)
T 3i65_A 79 NDSIYACTNIKHLDFINPFGVAAGF-----DKNGV--CIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINS 151 (415)
T ss_dssp CCCGGGCEEETTEEESSSEEECTTS-----STTCS--SHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEEC
T ss_pred cccccccEEECCEECCCCCEECCCC-----CCCHH--HHHHHHHcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeec
Confidence 3456689999999999999999832 12222 33566678865443 32211
Q ss_pred -----CCHH----HHhc---cC-------CCceEEEEeecCC----hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH
Q 017492 112 -----SSVE----EVAS---TG-------PGIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (370)
Q Consensus 112 -----~~~e----ei~~---~~-------~~~~~~Qly~~~d----~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d 168 (370)
..++ ++.+ .. ..+..+||..+++ .+...+.++++.+. ++.+.||+.||...
T Consensus 152 ~GfnN~G~d~~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~----- 225 (415)
T 3i65_A 152 CGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP----- 225 (415)
T ss_dssp CCSCBCCHHHHHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC-------
T ss_pred CCCCchhHHHHHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-----
Confidence 1111 1211 00 1245677754331 23444444555444 78888888888631
Q ss_pred hhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh--------------------cCCc-
Q 017492 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--------------------TKLP- 227 (370)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~--------------------~~~P- 227 (370)
+ .+. + .+++...+.++++++. .++|
T Consensus 226 ---------G--l~~--------------------l---q~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 271 (415)
T 3i65_A 226 ---------G--LRD--------------------N---QEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPL 271 (415)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCE
T ss_pred ---------C--ccc--------------------c---cCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCe
Confidence 0 000 0 1233344456666554 2689
Q ss_pred EEEEecCCH------HHHHHHHHcCccEEEEccCCccCCC--------C---cc----chHHHHHHHHHHccCCCcEEEe
Q 017492 228 ILVKGVLTA------EDARIAVQAGAAGIIVSNHGARQLD--------Y---VP----ATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 228 v~vK~v~~~------~~a~~a~~aG~d~I~vs~~gg~~~~--------~---~~----~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
|+||+..+. +.|+.+.++|+|+|+++|+...+.+ + |+ .+++.+.++++.+++++|||++
T Consensus 272 V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~ 351 (415)
T 3i65_A 272 VFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS 351 (415)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEC
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999997432 3478899999999999998754332 2 22 2457888898888768999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
|||++++|+.+++.+|||+|++||++++. |+. +++.+.++|+.+|...|+++++|+++..
T Consensus 352 GGI~s~eDa~e~l~aGAd~VqIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~~G~~ 411 (415)
T 3i65_A 352 GGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRK 411 (415)
T ss_dssp SSCCSHHHHHHHHHHTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTTTTTT
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 99999999999999999999999999874 453 6788999999999999999999998754
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=194.92 Aligned_cols=147 Identities=20% Similarity=0.270 Sum_probs=121.7
Q ss_pred CCccHHHHHHHHHhc-C-CcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----C-CCCccchHHHHHHHHHHccC--
Q 017492 210 RSLSWKDVKWLQTIT-K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQG-- 279 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~~-- 279 (370)
+...++.++++++.+ + .||+++.+.+.++++.+.++|+|+|+|+.+||+ . .+++.|++.++.++.+++..
T Consensus 267 ~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~ 346 (503)
T 1me8_A 267 SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYF 346 (503)
T ss_dssp SHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHh
Confidence 334577899999998 5 899999999999999999999999999666553 2 24578899999998876532
Q ss_pred -----CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHhcCH-------------
Q 017492 280 -----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGE------------- 321 (370)
Q Consensus 280 -----~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~~G~------------- 321 (370)
++|||++|||+++.|++|||++||++|++|++|+ |+++..|+
T Consensus 347 ~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~ 426 (503)
T 1me8_A 347 EETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQK 426 (503)
T ss_dssp HHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC----------
T ss_pred hhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccc
Confidence 5999999999999999999999999999999996 33322111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc-ccee
Q 017492 322 --------------KGVRRVLEMLREEFELAMALSGCRSLKEITR-DHIV 356 (370)
Q Consensus 322 --------------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~-~~l~ 356 (370)
.+|.++++.|..+|+..|.++|+++++||++ ..+.
T Consensus 427 ~~~~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~ 476 (503)
T 1me8_A 427 LSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKIT 476 (503)
T ss_dssp ----CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEE
T ss_pred eecccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhCCCEE
Confidence 2578999999999999999999999999987 4433
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=181.99 Aligned_cols=245 Identities=18% Similarity=0.213 Sum_probs=165.2
Q ss_pred CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC------C-----------------
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS------T----------------- 111 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~------~----------------- 111 (370)
.++.+++++++|.+++.||++|+- . +..++ ..+...++|..+++. |.. +
T Consensus 45 ~~~~~L~~~~~Gl~~~NPvglAaG-~----~~~~~--~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~ 117 (367)
T 3zwt_A 45 QDSDMLEVRVLGHKFRNPVGIAAG-F----DKHGE--AVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINR 117 (367)
T ss_dssp CCCGGGCEEETTEEESSSEEECTT-S----STTSS--SHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEEC
T ss_pred CCCCCCcEEECCEEcCCCCEeCCC-c----CCCHH--HHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEecCccceeec
Confidence 467889999999999999999962 1 22232 233344457665542 211 0
Q ss_pred -----CCH----HHHhcc---------CCCceEEEEeecCC-hHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhh
Q 017492 112 -----SSV----EEVAST---------GPGIRFFQLYVYKD-RNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIK 170 (370)
Q Consensus 112 -----~~~----eei~~~---------~~~~~~~Qly~~~d-~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~ 170 (370)
..+ +++.+. ...+.++||..+++ .+...+.++.++.. +++++.||+.||...
T Consensus 118 ~G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~------- 190 (367)
T 3zwt_A 118 YGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA------- 190 (367)
T ss_dssp CCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST-------
T ss_pred cCCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC-------
Confidence 112 222221 12368899864321 12233444433332 489999999999631
Q ss_pred hhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh-------cCCcEEEEecCC--H----H
Q 017492 171 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI-------TKLPILVKGVLT--A----E 237 (370)
Q Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~-------~~~Pv~vK~v~~--~----~ 237 (370)
+ .+. + .+++...+.++.+++. +++||++|+... . +
T Consensus 191 -------G--~~~--------------------l---~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ 238 (367)
T 3zwt_A 191 -------G--LRS--------------------L---QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKED 238 (367)
T ss_dssp -------T--GGG--------------------G---GSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHH
T ss_pred -------C--ccc--------------------c---CCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHH
Confidence 0 000 0 1222233455555543 689999999743 2 3
Q ss_pred HHHHHHHcCccEEEEccCC-ccC---------CCCc---cc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHG-ARQ---------LDYV---PA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~g-g~~---------~~~~---~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
.|+.+.++|+|+|+++|+. ++. ..+| ++ +++.+.++++.+++++|||++|||++++|+.+++.
T Consensus 239 ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~ 318 (367)
T 3zwt_A 239 IASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR 318 (367)
T ss_dssp HHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH
Confidence 4788899999999999874 221 1122 22 45788889888876899999999999999999999
Q ss_pred hCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 301 lGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+|||+|++||++++. |+. +++.+.++|+.+|...|+++++|+++..
T Consensus 319 ~GAd~V~vgra~l~~----gP~----~~~~i~~~l~~~m~~~G~~~i~e~~G~~ 364 (367)
T 3zwt_A 319 AGASLVQLYTALTFW----GPP----VVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp HTCSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred cCCCEEEECHHHHhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHhhCcc
Confidence 999999999999873 553 6788999999999999999999998753
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=192.36 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=115.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHccC-CCcEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvi 284 (370)
.++.++++++.+ ++||+++.+.+.++|+.+.++|+|+|+++.++|+- ...+.+++..+.++.+.+.. ++|||
T Consensus 284 v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 363 (511)
T 3usb_A 284 VIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI 363 (511)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred hhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence 567899999998 48999999999999999999999999996655541 23567888888888776532 69999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHhc----------------------CHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAE----------------------GEK 322 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~~----------------------G~~ 322 (370)
++|||+++.|+.|++++||++|++||+|+ |+++.. |.+
T Consensus 364 a~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~ 443 (511)
T 3usb_A 364 ADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIE 443 (511)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC--------------------------------
T ss_pred EeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcE
Confidence 99999999999999999999999999973 443321 222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 323 G-------VRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 323 ~-------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+ +.++++.|..+|+..|.++|+.++++|+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 444 GRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp --CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 2 678999999999999999999999999864
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=185.26 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=101.6
Q ss_pred cCCc-EEEEecCC--HHH----HHHHHHcCccEEEEccCCccCCC--------Cc---cc----hHHHHHHHHHHccCCC
Q 017492 224 TKLP-ILVKGVLT--AED----ARIAVQAGAAGIIVSNHGARQLD--------YV---PA----TIMALEEVVKATQGRI 281 (370)
Q Consensus 224 ~~~P-v~vK~v~~--~~~----a~~a~~aG~d~I~vs~~gg~~~~--------~~---~~----~~~~l~~i~~~~~~~i 281 (370)
.++| |++|+..+ .++ |+.+.++|+|+|+++|+...+.+ +| ++ +++.+.++++.+++++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4789 99998743 334 88899999999999998654322 12 21 4567888888876689
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
|||++|||++++|+.++|++|||+|++||++++. |+. +++.+++++..+|...|+++++|+++..
T Consensus 375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP~----l~~~i~~~l~~~l~~~G~~si~e~~G~~ 439 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRK 439 (443)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGGTTTT
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----ChH----HHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 9999999999999999999999999999999973 443 6788899999999999999999998865
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=186.34 Aligned_cols=142 Identities=22% Similarity=0.362 Sum_probs=116.8
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHcc-CCCcE
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipv 283 (370)
..++.++++++.+ ++||+++.+.+.++|+.+.++|+|+|.|++.+|+. ...+.+.+..+.++.++++ .++||
T Consensus 256 ~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPV 335 (490)
T 4avf_A 256 GVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPL 335 (490)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCE
T ss_pred hHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcE
Confidence 3568899999998 78999999999999999999999999996544431 2356788999999988763 37999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh-------------------------
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------- 318 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------------- 318 (370)
|++|||+++.|+.|++++||++||+|++|+ |+++.
T Consensus 336 Ia~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~ 415 (490)
T 4avf_A 336 IADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKL 415 (490)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC-------------------------------
T ss_pred EEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhcccccccccc
Confidence 999999999999999999999999999874 33321
Q ss_pred --cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|.+ .+.+++.+|..+||..|.++|+.+++||+..
T Consensus 416 ~~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~ 459 (490)
T 4avf_A 416 VPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ 459 (490)
T ss_dssp --------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred cCCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 0111 3668999999999999999999999999875
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=184.84 Aligned_cols=143 Identities=24% Similarity=0.404 Sum_probs=119.4
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-----C-CCccchHHHHHHHHHHccC-CCcE
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYVPATIMALEEVVKATQG-RIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-----~-~~~~~~~~~l~~i~~~~~~-~ipv 283 (370)
..|+.++++++.+ ++||+++.+.+.++++.+.++|+|+|+++++||+. . .++.++...+.++.+.+.. ++||
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipv 343 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPI 343 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCE
Confidence 4788999999999 79999999999999999999999999999887631 1 2356788888888876543 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh-----cC--------------HHH-
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EKG- 323 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~-----~G--------------~~~- 323 (370)
|++|||+++.|+.|+|++|||+|++||+|+. ++++ .| .+|
T Consensus 344 ia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~g~ 423 (494)
T 1vrd_A 344 IADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGI 423 (494)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------C
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCCcc
Confidence 9999999999999999999999999999972 2111 00 233
Q ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 324 ---------VRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 324 ---------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+.++++.+..+|+.+|.++|+.++.+|++..
T Consensus 424 ~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~ 463 (494)
T 1vrd_A 424 EGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463 (494)
T ss_dssp BCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred eEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence 6799999999999999999999999999754
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=186.24 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=117.5
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHcc-CCCcE
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipv 283 (370)
..++.++++++.+ ++||+++.+.+.+.++.+.++|+|+|+|+++.|.. ...+.+.+..+.++.++++ .++||
T Consensus 258 ~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPV 337 (496)
T 4fxs_A 258 GVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPV 337 (496)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCE
T ss_pred HHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeE
Confidence 3567899999998 79999999999999999999999999998544431 1245788889999888663 36999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc--------------------------------------------
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------------------------- 319 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-------------------------------------------- 319 (370)
|++|||+++.|+.|++++|||+||+||+|+....+.
T Consensus 338 Ia~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~e 417 (496)
T 4fxs_A 338 IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPE 417 (496)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCS
T ss_pred EEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCC
Confidence 999999999999999999999999999885321110
Q ss_pred CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 320 GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 320 G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
|. ..+.+++.+|..+|+..|.++|+.+|+||+..
T Consensus 418 g~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~ 458 (496)
T 4fxs_A 418 GIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 458 (496)
T ss_dssp BCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred ccEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 00 13778999999999999999999999999854
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=174.93 Aligned_cols=244 Identities=18% Similarity=0.217 Sum_probs=174.2
Q ss_pred ecCceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCCC------HHHHhccCC--CceEEEEeecCChHHHHH
Q 017492 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTSS------VEEVASTGP--GIRFFQLYVYKDRNVVAQ 140 (370)
Q Consensus 70 l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~~------~eei~~~~~--~~~~~Qly~~~d~~~~~~ 140 (370)
++.||++|||++. .+..++..+.++|. .++++++.+.. .+++.+..+ .+.++||+ ..+++...+
T Consensus 2 l~nriv~APM~g~------td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDR------TDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTT------SSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCCC------CHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 6789999999864 37788888999986 67777774321 123443322 68999998 678888899
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
.+++++++|++.|.||++||..-.|. .++ +..+. .++.+..+.++++
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~----d~~---------------------------G~~l~--~~~~~~~eiv~av 121 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQE----GGY---------------------------GACLL--LDLARVREILKAM 121 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHH----TTC---------------------------GGGGG--GCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcC----CCc---------------------------chhHH--hCHHHHHHHHHHH
Confidence 99999999999999999999742111 011 00111 3556778899999
Q ss_pred HHhcCCcEEEEecC------C----HHHHHHHHHcCccEEEEccCCccC-C------CCccchHHHHHHHHHHccCCCcE
Q 017492 221 QTITKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGARQ-L------DYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 221 r~~~~~Pv~vK~v~------~----~~~a~~a~~aG~d~I~vs~~gg~~-~------~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
++.+++||++|... + .+.++.+.++|+|+|+|++.-..+ . ...+..++.+.++++.+ .++||
T Consensus 122 ~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~-~~iPV 200 (350)
T 3b0p_A 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDF-PQLTF 200 (350)
T ss_dssp HHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHC-TTSEE
T ss_pred HHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhC-CCCeE
Confidence 99999999999742 1 345788999999999996421100 0 11124678888888876 37999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH--------hcC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA--------AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~--------~~G---~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|++|||++++|+.++++ |||+||+||+++..-. ..| .....++++.+.+.++..+. .|. .+.++++
T Consensus 201 ianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~k 277 (350)
T 3b0p_A 201 VTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL-KGT-PPWAVLR 277 (350)
T ss_dssp EEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHH-HTC-CHHHHHT
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-cCc-cHHHHHH
Confidence 99999999999999998 9999999999864211 112 11244567777777777776 365 6888888
Q ss_pred cceee
Q 017492 353 DHIVT 357 (370)
Q Consensus 353 ~~l~~ 357 (370)
+.++.
T Consensus 278 h~~~~ 282 (350)
T 3b0p_A 278 HMLNL 282 (350)
T ss_dssp TSTTT
T ss_pred HHHHH
Confidence 87654
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=181.75 Aligned_cols=145 Identities=16% Similarity=0.236 Sum_probs=120.4
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHcc-CCCcE
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipv 283 (370)
..|+.++++++.+ ++|++.+++.+.++++.+.++|+|+|.+++++|+. ..++.++...+.++.+... .++||
T Consensus 260 ~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipv 339 (491)
T 1zfj_A 260 GVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTI 339 (491)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCE
Confidence 4678899999999 89999999999999999999999999998766542 1346678888888877542 37999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHhcC----------------------H
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------E 321 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~~G----------------------~ 321 (370)
|++|||+++.|+.|++++||++|++|++|+. +++..+ .
T Consensus 340 ia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~~~ 419 (491)
T 1zfj_A 340 IADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVP 419 (491)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCC
T ss_pred EeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccccCc
Confidence 9999999999999999999999999999972 111000 2
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 322 KG----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 322 ~~----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
+| +.++++.|..+|+..|.++|+.++.+|+.....
T Consensus 420 ~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~~~ 464 (491)
T 1zfj_A 420 EGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQF 464 (491)
T ss_dssp SBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCE
T ss_pred CcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcCcE
Confidence 23 889999999999999999999999999976443
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=170.42 Aligned_cols=245 Identities=17% Similarity=0.113 Sum_probs=156.4
Q ss_pred CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC-----------------------
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST----------------------- 111 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~----------------------- 111 (370)
..+.|++|+++|.+|++||++|+-.. +. +....++..+.|..+++. |...
T Consensus 32 ~~~~~L~v~~~Gl~f~NPvglAaG~~----~~--~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G 105 (354)
T 3tjx_A 32 RGSMSLQVNLLNNTFANPFMNAAGVM----CT--TTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMG 105 (354)
T ss_dssp -CCCCCCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCC
T ss_pred CCCCceeEEECCEEcCCCcEEccCCC----CC--CHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccc
Confidence 45789999999999999999997222 22 456777777888765542 2111
Q ss_pred ---CCHH----HHhccC---CCceEEEEeecCChHHHHHHHHHHHH---cCCcEEEEecCCCCCcchhHHhhhhcCCCCc
Q 017492 112 ---SSVE----EVASTG---PGIRFFQLYVYKDRNVVAQLVRRAER---AGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (370)
Q Consensus 112 ---~~~e----ei~~~~---~~~~~~Qly~~~d~~~~~~~l~ra~~---~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~ 178 (370)
...+ ++.+.. ..+.++++.. .+.+...+..+++.+ .+++++.||+.||.. |.
T Consensus 106 ~~n~G~~~~~~~~~~~~~~~~~pvivsi~g-~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~-------------~g- 170 (354)
T 3tjx_A 106 LPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNV-------------PG- 170 (354)
T ss_dssp CCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------------
T ss_pred cCCHHHHHHHHHHHHhhccCCceEEEEEec-CChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC-------------cc-
Confidence 1122 222221 1456777763 344444444444433 478888999888852 00
Q ss_pred cccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH------HHHHHHHHc-CccEEE
Q 017492 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA------EDARIAVQA-GAAGII 251 (370)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~------~~a~~a~~a-G~d~I~ 251 (370)
.+. + +.+++...+.++++++.++.|+.+|..... ..+..+.+. +++.+.
T Consensus 171 --~~~--------------------l--~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~ 226 (354)
T 3tjx_A 171 --KPQ--------------------V--AYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFIT 226 (354)
T ss_dssp -------------------------C--TTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEE
T ss_pred --hhh--------------------h--ccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhh
Confidence 000 0 013334556788999999999999986432 113334444 445554
Q ss_pred EccCCc-------------------cCCCCccchHH----HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 252 VSNHGA-------------------RQLDYVPATIM----ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 252 vs~~gg-------------------~~~~~~~~~~~----~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
..|.-. .+..+|++.+. .+.++.+.. .++|||++|||.|++|++++|.+|||+||+
T Consensus 227 ~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv 305 (354)
T 3tjx_A 227 CINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQV 305 (354)
T ss_dssp ECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEEE
T ss_pred eecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 433211 01123444433 444555544 378999999999999999999999999999
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 309 gr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
||+++|. |+. ++..+.+||+.+|+..|+++++|+++..
T Consensus 306 ~Ta~~y~----GP~----~~~~I~~~L~~~L~~~G~~si~e~~G~~ 343 (354)
T 3tjx_A 306 GTALQEE----GPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp CHHHHHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred Chhhhhc----Cch----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 9999873 654 6788899999999999999999999864
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=176.61 Aligned_cols=140 Identities=23% Similarity=0.312 Sum_probs=111.2
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-------CCCccchHHHHHHHHHHcc-CCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-------LDYVPATIMALEEVVKATQ-GRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-------~~~~~~~~~~l~~i~~~~~-~~ipvi 284 (370)
.++.++++++.+++|+++|++.+.++++.+. |+|+|.+ +.|+.. ..++.++...+.++.+... .++|||
T Consensus 256 ~L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVi 332 (486)
T 2cu0_A 256 AIKSMKEMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVI 332 (486)
T ss_dssp HHHHHHHHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEE
T ss_pred hhhHHHHHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEE
Confidence 3567899999999999999999999998888 9999999 444332 2345566666655544331 179999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHhcC----------------------HH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------EK 322 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~~G----------------------~~ 322 (370)
++|||+++.|++|||++|||+|++|++|+. +++..| ++
T Consensus 333 a~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~~~~~ 412 (486)
T 2cu0_A 333 ADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPE 412 (486)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCC
T ss_pred ecCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhccccccccccccccccccccc
Confidence 999999999999999999999999999983 111101 13
Q ss_pred H----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 323 G----------VRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 323 ~----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
| +..+++.|..+|+..|.++|+.++.+|+....
T Consensus 413 g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~~ 455 (486)
T 2cu0_A 413 GVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGE 455 (486)
T ss_dssp BCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCC
T ss_pred ceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhCC
Confidence 3 88999999999999999999999999986543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-19 Score=179.23 Aligned_cols=140 Identities=23% Similarity=0.345 Sum_probs=111.4
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccc---hHHHHHHHHHHccCCC
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPA---TIMALEEVVKATQGRI 281 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~---~~~~l~~i~~~~~~~i 281 (370)
+.++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++|+|.. .+++.+ .+..+.++++.+ ++
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~--~i 359 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF--GV 359 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG--TC
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC--CC
Confidence 4678999999999 89999999999999999999999999997765421 123433 344555555554 79
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh---------------------cC
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA---------------------EG 320 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~---------------------~G 320 (370)
|||++|||+++.|+.|++++|||+|++||+|+. ++.. .+
T Consensus 360 pVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~ 439 (514)
T 1jcn_A 360 PIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKI 439 (514)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC----------------------------------------
T ss_pred CEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhcccccccee
Confidence 999999999999999999999999999998853 1110 02
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 EKGV----------RRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~~~v----------~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
++|+ .++++.|..||+.+|.++|+++++||++.
T Consensus 440 ~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 440 AQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence 2454 89999999999999999999999999985
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=150.94 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=139.5
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecC--
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYK-- 133 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~-- 133 (370)
+++|| ++.||+.+||++.+ +..++.++.++|...++......+.+++ .+..+.++.++++...
T Consensus 9 ~~~l~--~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 9 TETFG--VEHPIMQGGMQWVG------RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ 80 (328)
T ss_dssp HHHHT--CSSSEEECCCTTTC------SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS
T ss_pred HHHhC--CCCCEEECCCCCCC------cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 34565 57899999997643 5579999999997666643322234433 2223346788888751
Q ss_pred -ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 134 -DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 134 -d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
+++ ..+.++.+.+.|++.+.++.++|
T Consensus 81 ~~~~-~~~~~~~~~~~g~d~V~~~~g~p---------------------------------------------------- 107 (328)
T 2gjl_A 81 KPVP-YAEYRAAIIEAGIRVVETAGNDP---------------------------------------------------- 107 (328)
T ss_dssp SCCC-HHHHHHHHHHTTCCEEEEEESCC----------------------------------------------------
T ss_pred cCcc-HHHHHHHHHhcCCCEEEEcCCCc----------------------------------------------------
Confidence 122 45677888889999887764322
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
++.++++++. ++|++.+ +.+.++++.+.++|+|+|.+.+. ||+......++++.++++++.+ ++||+++|||+
T Consensus 108 -~~~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~ 182 (328)
T 2gjl_A 108 -GEHIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFA 182 (328)
T ss_dssp -HHHHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCC
T ss_pred -HHHHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCC
Confidence 3455666664 7888855 68899999999999999999763 4432222356888899888766 89999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVYSLAAEGE 321 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~~~~~~G~ 321 (370)
+++|+.+++++|||+|++||+|+....+.+.
T Consensus 183 ~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~ 213 (328)
T 2gjl_A 183 DGRGLVAALALGADAINMGTRFLATRECPIH 213 (328)
T ss_dssp SHHHHHHHHHHTCSEEEESHHHHTSSSSCSC
T ss_pred CHHHHHHHHHcCCCEEEECHHHHcCcccccc
Confidence 9999999999999999999999875444333
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=152.92 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=135.5
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~ 136 (370)
++|| ++.||+.+||++.+ +..++.++.++|...++... ..+.+++ .+....++.+|++.... +
T Consensus 7 ~~l~--~~~Pii~apM~g~s------~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~-~ 76 (332)
T 2z6i_A 7 ELLK--IDYPIFQGGMAWVA------DGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLLSP-F 76 (332)
T ss_dssp HHHT--CSSSEEECCCTTTC------CHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTTST-T
T ss_pred HHhC--CCCCEEeCCCCCCC------cHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCCCC-C
Confidence 3556 67899999998542 45789999999975445322 2344432 22223578899886322 2
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
..+.++.+.+.|++.+.++.++|. +.
T Consensus 77 -~~~~~~~a~~~g~d~V~~~~g~p~-----------------------------------------------------~~ 102 (332)
T 2z6i_A 77 -VEDIVDLVIEEGVKVVTTGAGNPS-----------------------------------------------------KY 102 (332)
T ss_dssp -HHHHHHHHHHTTCSEEEECSSCGG-----------------------------------------------------GT
T ss_pred -HHHHHHHHHHCCCCEEEECCCChH-----------------------------------------------------HH
Confidence 456788888999999888654331 13
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
++++++ .++||++| +.+.++++.+.++|+|+|.+++. ||+. +..+++..++++++.+ ++||+++|||+++++
T Consensus 103 i~~l~~-~g~~v~~~-v~~~~~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~ 176 (332)
T 2z6i_A 103 MERFHE-AGIIVIPV-VPSVALAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEG 176 (332)
T ss_dssp HHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHH
T ss_pred HHHHHH-cCCeEEEE-eCCHHHHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHH
Confidence 455555 48899988 47889999999999999999764 4431 2356788899998887 899999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~ 316 (370)
+.+++++|||+|++||+|+...
T Consensus 177 ~~~al~~GAdgV~vGs~~l~~~ 198 (332)
T 2z6i_A 177 AAAGFMLGAEAVQVGTRFVVAK 198 (332)
T ss_dssp HHHHHHTTCSEEEECHHHHTBT
T ss_pred HHHHHHcCCCEEEecHHHhcCc
Confidence 9999999999999999998653
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=149.82 Aligned_cols=183 Identities=21% Similarity=0.284 Sum_probs=134.7
Q ss_pred eecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCCCceEEEEeecCChHHHHHH
Q 017492 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQL 141 (370)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~~~~~~Qly~~~d~~~~~~~ 141 (370)
.++.||+.+||++.+ +..++.++.++|...++... ..+.+++. +....++.++++...+ + ..+.
T Consensus 24 ~~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~-~-~~~~ 94 (326)
T 3bo9_A 24 EIEHPILMGGMAWAG------TPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILVSP-W-ADDL 94 (326)
T ss_dssp TCSSSEEECCCTTTS------CHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETTST-T-HHHH
T ss_pred CCCCCEEECCCCCCC------CHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEeccCC-C-HHHH
Confidence 467899999998643 55799999999976666432 23454332 2222467788875322 1 3566
Q ss_pred HHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHH
Q 017492 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (370)
Q Consensus 142 l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir 221 (370)
++.+.+.|++.+.++.++| .+.+++++
T Consensus 95 ~~~~~~~g~d~V~l~~g~p-----------------------------------------------------~~~~~~l~ 121 (326)
T 3bo9_A 95 VKVCIEEKVPVVTFGAGNP-----------------------------------------------------TKYIRELK 121 (326)
T ss_dssp HHHHHHTTCSEEEEESSCC-----------------------------------------------------HHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCc-----------------------------------------------------HHHHHHHH
Confidence 7778889999888765432 12345555
Q ss_pred HhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 017492 222 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (370)
Q Consensus 222 ~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal 299 (370)
+ .++|+++ .+.+.++++.+.++|+|+|++++ +||++ +..+++..++++++.+ ++||+++|||++++|+.+++
T Consensus 122 ~-~g~~v~~-~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~al 195 (326)
T 3bo9_A 122 E-NGTKVIP-VVASDSLARMVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIADGRGMAAAF 195 (326)
T ss_dssp H-TTCEEEE-EESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHH
T ss_pred H-cCCcEEE-EcCCHHHHHHHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCCHHHHHHHH
Confidence 4 3778775 46889999999999999999987 45542 2356888999998877 89999999999999999999
Q ss_pred HhCCCEEEEcHHHHHHHHhc
Q 017492 300 ALGASGIFIGRPVVYSLAAE 319 (370)
Q Consensus 300 alGAd~V~igr~~l~~~~~~ 319 (370)
++||++|++||+|+....+.
T Consensus 196 ~~GA~gV~vGs~~~~~~e~~ 215 (326)
T 3bo9_A 196 ALGAEAVQMGTRFVASVESD 215 (326)
T ss_dssp HHTCSEEEESHHHHTBSSCC
T ss_pred HhCCCEEEechHHHcCcccc
Confidence 99999999999998754443
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-15 Score=145.69 Aligned_cols=205 Identities=21% Similarity=0.232 Sum_probs=128.2
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCCCceEEEEeecCCh----HHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDR----NVVA 139 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~~~~~~Qly~~~d~----~~~~ 139 (370)
+.||+.+||+++ . .+..++.++.++|...+++.. ..+.+++. +..+.|+.+|++...+. +...
T Consensus 10 ~~Pii~apMagg-v----s~~~la~av~~aGglG~i~~~-~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~ 83 (369)
T 3bw2_A 10 PLPIVQAPMAGG-V----SVPQLAAAVCEAGGLGFLAAG-YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVE 83 (369)
T ss_dssp SSSEEECCCTTT-T----SCHHHHHHHHHTTSBEEEECT-TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHH
T ss_pred cCCEEeCCCCCC-C----CcHHHHHHHHHCCCEEEcCCC-CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHH
Confidence 789999999852 1 255899999999987677542 34455432 22335778888865432 1222
Q ss_pred HHH----HHHHHcCCcEEEEecCCCCCcch--hHH-hhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 140 QLV----RRAERAGFKAIALTVDTPRLGRR--EAD-IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 140 ~~l----~ra~~~G~~ai~itvd~p~~g~r--~~d-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
+.+ ..+.+.|.. ++.|....+ ..+ +...... .. ..+.... ...
T Consensus 84 ~~~~~l~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~----g~--------------------~~V~~~~-g~~ 133 (369)
T 3bw2_A 84 VYAHQLAGEAAWYETE-----LGDPDGGRDDGYDAKLAVLLDD----PV--------------------PVVSFHF-GVP 133 (369)
T ss_dssp HHHHHTHHHHHHTTCC-----CCCSCSCSSTTHHHHHHHHHHS----CC--------------------SEEEEES-SCC
T ss_pred HHHHHHHHHHHHcCCC-----cCcccccccccHHHHHHHHHhc----CC--------------------CEEEEeC-CCC
Confidence 222 233344433 222321100 000 0000000 00 0000000 112
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--Ccc---CCCCc------cchHHHHHHHHHHccCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR---QLDYV------PATIMALEEVVKATQGRI 281 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~---~~~~~------~~~~~~l~~i~~~~~~~i 281 (370)
.++.++++++ .++||+++ +.+.++++.+.++|+|+|.+++. ||+ ..+.. ...+..++++++.+ ++
T Consensus 134 ~~~~i~~~~~-~g~~v~~~-v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~i 209 (369)
T 3bw2_A 134 DREVIARLRR-AGTLTLVT-ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209 (369)
T ss_dssp CHHHHHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--SS
T ss_pred cHHHHHHHHH-CCCeEEEE-CCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--Cc
Confidence 4678888887 47888754 67899999999999999999763 332 21111 23478888888876 89
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
||+++|||.+++++.+++++|||+|++||+|+..
T Consensus 210 PViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~ 243 (369)
T 3bw2_A 210 PVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLAT 243 (369)
T ss_dssp CEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 9999999999999999999999999999999864
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=138.65 Aligned_cols=227 Identities=16% Similarity=0.167 Sum_probs=145.3
Q ss_pred ceeEcCeeecCceeecccccccccCCh---hhH--HHHHHHHHcCCceeecCCCCC--------------C------HHH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEY--ATARAASAAGTIMTLSSWSTS--------------S------VEE 116 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~---~e~--~la~aa~~~G~~~~~s~~~~~--------------~------~ee 116 (370)
..+|.+.+++++|++|||+...-..++ .+. ..-+.-++.|+.++++++... + +.+
T Consensus 8 p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~ 87 (338)
T 1z41_A 8 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 87 (338)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHH
Confidence 467889999999999999865421012 122 222222245788777654211 1 112
Q ss_pred Hhc---cCCCceEEEEeecC----------------------Ch------------HHHHHHHHHHHHcCCcEEEEecCC
Q 017492 117 VAS---TGPGIRFFQLYVYK----------------------DR------------NVVAQLVRRAERAGFKAIALTVDT 159 (370)
Q Consensus 117 i~~---~~~~~~~~Qly~~~----------------------d~------------~~~~~~l~ra~~~G~~ai~itvd~ 159 (370)
+.+ ....+.++||+-.. .+ +...+..++++++||+++.||..|
T Consensus 88 ~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~ 167 (338)
T 1z41_A 88 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 167 (338)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 221 12356789997421 11 344556678888999999999876
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC-----
Q 017492 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL----- 234 (370)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~----- 234 (370)
.+ +-+.|.-|.. +.+. +.-+ +. +. ....+..+.++.+|+.++.||.+|+..
T Consensus 168 gy-------Ll~qFlsp~~-n~R~------------d~yG-Gs-le--nr~r~~~eiv~avr~~v~~pv~vris~~~~~~ 223 (338)
T 1z41_A 168 GY-------LIHEFLSPLS-NHRT------------DEYG-GS-PE--NRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 223 (338)
T ss_dssp TS-------HHHHHHCTTT-CCCC------------STTS-SS-HH--HHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred ch-------HHHHccCCCc-CCcC------------cccC-cc-hh--hhHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence 43 1122211210 0000 0000 00 11 123467889999999999999999853
Q ss_pred ---CHH----HHHHHHHcCccEEEEccCCcc-C-CCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-C
Q 017492 235 ---TAE----DARIAVQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (370)
Q Consensus 235 ---~~~----~a~~a~~aG~d~I~vs~~gg~-~-~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-A 303 (370)
+.+ .++.+.++|+|+|.+++.... + ...++ ..++.+.++++.+ ++||++.|||++++++.++|+.| |
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~s~~~a~~~l~~G~a 301 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRA 301 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHcCCc
Confidence 233 367888999999999763211 1 11222 2467788888887 89999999999999999999999 9
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|++||+++.
T Consensus 302 D~V~iGR~~i~ 312 (338)
T 1z41_A 302 DLIFIGRELLR 312 (338)
T ss_dssp SEEEECHHHHH
T ss_pred eEEeecHHHHh
Confidence 99999999985
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=132.02 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=145.5
Q ss_pred ceeEcCeeecCceeecccccccccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHH------HHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~---~e~~la~aa~~~G~~~~~s~~~~~--------------~~e------ei~ 118 (370)
..+|.+.+++++|++|||+......++ .+..+..-++++++.++++++... +.+ .+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (365)
T 2gou_A 8 PITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVT 87 (365)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHH
Confidence 367889999999999999866421122 266677777777887777654211 122 222
Q ss_pred cc---CCCceEEEEeec-----------------------------------------CCh------------HHHHHHH
Q 017492 119 ST---GPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (370)
Q Consensus 119 ~~---~~~~~~~Qly~~-----------------------------------------~d~------------~~~~~~l 142 (370)
+. .....++||+-. ..+ +...+..
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (365)
T 2gou_A 88 EAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAA 167 (365)
T ss_dssp HHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 11 125678999730 111 3445666
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++|+++||+++.||..|... -+.|.-|. .+.+ ++.-+ +.. . ....+..+.++.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~gYL-------l~qFlsp~-~N~R------------~D~yG-Gsl-e--nr~r~~~eiv~avr~ 223 (365)
T 2gou_A 168 LNAMEAGFDGIELHAANGYL-------INQFIDSE-ANNR------------SDEYG-GSL-E--NRLRFLDEVVAALVD 223 (365)
T ss_dssp HHHHHTTCSEEEEECCTTSH-------HHHHHSGG-GCCC------------CSTTS-SSH-H--HHTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEecccchh-------HhhccCCC-ccCc------------CcccC-cch-h--hhHHHHHHHHHHHHH
Confidence 77888999999999876431 11221111 0000 00000 001 1 134467889999999
Q ss_pred hcCC-cEEEEecCC-----------HHH----HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEE
Q 017492 223 ITKL-PILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 223 ~~~~-Pv~vK~v~~-----------~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.++- ||.+|+... .++ ++.+.++|+|+|.+++..- +..+ ..++.+.++++.+ ++|||+
T Consensus 224 ~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~---~~~~~~~~~~~~~i~~~~--~iPvi~ 298 (365)
T 2gou_A 224 AIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW---DDAPDTPVSFKRALREAY--QGVLIY 298 (365)
T ss_dssp HHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT---TBCCCCCHHHHHHHHHHC--CSEEEE
T ss_pred HcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCCCccHHHHHHHHHHC--CCcEEE
Confidence 9843 999998742 233 7888899999999976321 1111 1356777888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.||| +++++.++|+.| ||+|++||+++.
T Consensus 299 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~ 327 (365)
T 2gou_A 299 AGRY-NAEKAEQAINDGLADMIGFGRPFIA 327 (365)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred eCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence 9999 999999999998 999999999985
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=127.92 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=146.7
Q ss_pred ceeEcCeeecCceeecccccccccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHH------HHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~---~e~~la~aa~~~G~~~~~s~~~~~--------------~~e------ei~ 118 (370)
..+|.+.++++.|++|||+......++ .+..+..-++++|+.++++++... +.+ .+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (364)
T 1vyr_A 8 PLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKIT 87 (364)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHH
Confidence 467889999999999999865321222 366777778888888888654211 122 222
Q ss_pred c---cCCCceEEEEeec-----------------------------------------CCh------------HHHHHHH
Q 017492 119 S---TGPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (370)
Q Consensus 119 ~---~~~~~~~~Qly~~-----------------------------------------~d~------------~~~~~~l 142 (370)
+ ......++||+-. ..+ +...+..
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (364)
T 1vyr_A 88 AGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAV 167 (364)
T ss_dssp HHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 1235678999720 111 3445666
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++|+++|++++.||..|.. +-+.|--|. .+.+ ++.-+ +.. . ....+..+.++.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~Gy-------Ll~qFlsp~-~N~R------------~D~yG-Gsl-e--nr~r~~~eiv~avr~ 223 (364)
T 1vyr_A 168 ANAREAGFDLVELHSAHGY-------LLHQFLSPS-SNQR------------TDQYG-GSV-E--NRARLVLEVVDAVCN 223 (364)
T ss_dssp HHHHHTTCSEEEEEECTTS-------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCccch-------HHHhccCCc-cccc------------CCcCC-cch-h--cChhhHHHHHHHHHH
Confidence 7788899999999987633 111221111 0000 00000 011 1 234567889999999
Q ss_pred hcC-CcEEEEecCC------------HHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 223 ITK-LPILVKGVLT------------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 223 ~~~-~Pv~vK~v~~------------~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.++ .||.+|+... .++ ++.+.++|+|+|.+++.+..+.. ...++.+.++++.+ ++||++
T Consensus 224 ~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~v~~~~--~iPvi~ 299 (364)
T 1vyr_A 224 EWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK--PYSEAFRQKVRERF--HGVIIG 299 (364)
T ss_dssp HSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHC--CSEEEE
T ss_pred hcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCC--cccHHHHHHHHHHC--CCCEEE
Confidence 984 3999998642 223 78888999999999763211111 12456777888877 899999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.||| +++++.++|+.| ||+|++||+++.
T Consensus 300 ~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 300 AGAY-TAEKAEDLIGKGLIDAVAFGRDYIA 328 (364)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence 9999 899999999998 999999999985
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=131.26 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=144.0
Q ss_pred ceeEcCeeecCceeecccccccccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHH------HHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~---~e~~la~aa~~~G~~~~~s~~~~~--------------~~e------ei~ 118 (370)
..+|.+.++++.|++|||+.... ++ .+..+..-++++|+.+++++.... +.+ .+.
T Consensus 14 P~~ig~~~l~NRiv~aPm~~~~a--~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 91 (377)
T 2r14_A 14 PLQLGSLSLPNRVIMAPLTRSRT--PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVV 91 (377)
T ss_dssp CEEETTEEESCSEEECCCCCCCC--TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCcCCcC--CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHH
Confidence 47788999999999999986532 22 356677777777877777654211 122 222
Q ss_pred c---cCCCceEEEEeec------------------------------------------CCh------------HHHHHH
Q 017492 119 S---TGPGIRFFQLYVY------------------------------------------KDR------------NVVAQL 141 (370)
Q Consensus 119 ~---~~~~~~~~Qly~~------------------------------------------~d~------------~~~~~~ 141 (370)
+ ......++||+-. ..+ +...+.
T Consensus 92 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 171 (377)
T 2r14_A 92 EAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQA 171 (377)
T ss_dssp HHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 1 1225678999731 011 345566
Q ss_pred HHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHH
Q 017492 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (370)
Q Consensus 142 l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir 221 (370)
.++|+++||+++.||..|.. +-+.|--|. .+.+ ++.-+ +.. . ....+..++++.+|
T Consensus 172 A~~a~~aGfDgVEIh~a~GY-------Ll~QFlsp~-~N~R------------~D~yG-Gsl-e--nR~r~~~eiv~aVr 227 (377)
T 2r14_A 172 AQRAKRAGFDMVEVHAANAC-------LPNQFLATG-TNRR------------TDQYG-GSI-E--NRARFPLEVVDAVA 227 (377)
T ss_dssp HHHHHHHTCSEEEEEECTTC-------HHHHHHSTT-TCCC------------CSTTS-SSH-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCcccc-------hHHhccCCc-cccC------------CCccC-cch-h--hchHHHHHHHHHHH
Confidence 67888899999999987632 112221111 0000 00000 001 1 13346788999999
Q ss_pred HhcC-CcEEEEecCC-----------HHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 222 TITK-LPILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 222 ~~~~-~Pv~vK~v~~-----------~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+.++ -||.+|+... .++ ++.+.++|+|+|.+++....+...+ ..++.+.++++.+ ++|||+
T Consensus 228 ~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~--~iPvi~ 304 (377)
T 2r14_A 228 EVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRF--KGGLIY 304 (377)
T ss_dssp HHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHC--CSEEEE
T ss_pred HHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHC--CCCEEE
Confidence 9985 3999998531 233 7888899999999975321111111 1456677888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.||| +++++.++|+.| ||+|++||+++.
T Consensus 305 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~ 333 (377)
T 2r14_A 305 CGNY-DAGRAQARLDDNTADAVAFGRPFIA 333 (377)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence 9999 699999999998 999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-12 Score=123.13 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCccHHHHHHHHHhcCCcEEEEecCC------------HHHHHHHHHcCccEEEEccCCccC--CCCccc-hHHHHHHHH
Q 017492 210 RSLSWKDVKWLQTITKLPILVKGVLT------------AEDARIAVQAGAAGIIVSNHGARQ--LDYVPA-TIMALEEVV 274 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK~v~~------------~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~-~~~~l~~i~ 274 (370)
..|..+.++.+|+.++.||.+|+... .+.++.+.++|+|+|.|++.+-.. ...++. .++.+.+++
T Consensus 194 ~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 273 (340)
T 3gr7_A 194 YRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIR 273 (340)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHH
Confidence 34678899999999999999998742 244788899999999997632111 111222 466778888
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+.+ ++||++.|||++++++.++|..| ||+|++||+++.
T Consensus 274 ~~~--~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 274 REA--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR 312 (340)
T ss_dssp HHT--TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHc--CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence 887 89999999999999999999999 999999999985
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=154.11 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=140.8
Q ss_pred eeecccC-CCCCCcccee---EcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH------
Q 017492 48 FRPRILI-DVSKIDMNTT---VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV------ 117 (370)
Q Consensus 48 l~pr~l~-~~~~vd~s~~---l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei------ 117 (370)
|.||..+ .-.+++++|. ++| ..||+.|||++.. .+..|+.+++++|...+++.....+.|++
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg---~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~ 629 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLG---VPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISK 629 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHT---SCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHH
T ss_pred cCCcceecCCCceecchhhhhccc---cceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHH
Confidence 4676654 2234455554 455 6899999998432 25579999999999999944444555543
Q ss_pred -hccC--CCceEEEEeecCCh--HHHHHHHHHHHHcCCcE--EEEecCCCCCcchhHHhhhhcCCCCccccccccccccC
Q 017492 118 -ASTG--PGIRFFQLYVYKDR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (370)
Q Consensus 118 -~~~~--~~~~~~Qly~~~d~--~~~~~~l~ra~~~G~~a--i~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (370)
.+.. ..++.+++....+. ....++++.+.+.|++. +.++.+.|
T Consensus 630 vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p------------------------------ 679 (2060)
T 2uva_G 630 IEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVP------------------------------ 679 (2060)
T ss_dssp HGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCC------------------------------
T ss_pred HHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCC------------------------------
Confidence 2333 25677777654333 23557788888888877 44322111
Q ss_pred ccccccchhhHHHhhhcCCCCccHH-HHHHHHHhcCCcEEEEecCCHHHHHHH----HHcCccEEE---Ecc--CCcc-C
Q 017492 191 KMDEANDSGLAAYVAGQIDRSLSWK-DVKWLQTITKLPILVKGVLTAEDARIA----VQAGAAGII---VSN--HGAR-Q 259 (370)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~~~~-~i~~ir~~~~~Pv~vK~v~~~~~a~~a----~~aG~d~I~---vs~--~gg~-~ 259 (370)
..+ .++.++ ..+++++ +.+.+..++..+ .++|+|+|+ +.+ .||+ .
T Consensus 680 ----------------------~~e~~~~~l~-~~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g 735 (2060)
T 2uva_G 680 ----------------------SIEVANEYIQ-TLGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHS 735 (2060)
T ss_dssp ----------------------CHHHHHHHHH-HSCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCC
T ss_pred ----------------------CHHHHHHHHH-HcCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCC
Confidence 222 233343 3488887 667777777666 899999999 544 1332 1
Q ss_pred -CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH-----------HhCCCEEEEcHHHHHHHHh
Q 017492 260 -LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 260 -~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~~~~ 318 (370)
.+...+.+..+++|++.+ ++|||++|||.++.|++++| ++|||+|++|+.|+....+
T Consensus 736 ~~d~~~~~l~lv~~i~~~~--~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 736 FEDFHQPILLMYSRIRKCS--NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp SCCSHHHHHHHHHHHHTST--TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTS
T ss_pred cccccchHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCC
Confidence 233456778889998876 79999999999999999999 9999999999999865433
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-12 Score=124.19 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...+..++|+++||+++.||..+-. |-+.|--|. .+.+ ++.-+ +.. . ....+..+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGY-------Ll~QFLsp~-~N~R------------tD~yG-Gsl-e--nR~rf~~E 226 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGY-------LIDQFLKDG-INDR------------TDEYG-GSL-A--NRCKFITQ 226 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCccch-------HHHhccCCc-cCcc------------CCccC-cCh-h--hhhHHHHH
Confidence 35566677888999999999987532 122221111 0000 00000 011 1 13346788
Q ss_pred HHHHHHHhcC-CcEEEEecCC---------------HHHHHHHHHcC------ccEEEEccCCccCCCCcc--------c
Q 017492 216 DVKWLQTITK-LPILVKGVLT---------------AEDARIAVQAG------AAGIIVSNHGARQLDYVP--------A 265 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~---------------~~~a~~a~~aG------~d~I~vs~~gg~~~~~~~--------~ 265 (370)
+++.+|+.++ .||.+|+... .+.++.+.++| +|+|.+++....+....+ .
T Consensus 227 iv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 306 (402)
T 2hsa_B 227 VVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306 (402)
T ss_dssp HHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHH
T ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcc
Confidence 9999999984 5999997532 13367888999 999999763211111111 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.++.+.++++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 307 ~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 307 EARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp HHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 355677788777 7999999999 999999999998 999999999985
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-12 Score=125.12 Aligned_cols=225 Identities=15% Similarity=0.094 Sum_probs=137.6
Q ss_pred ceeEcCeeecCceeecccccccc--cCChhhHHHHHHHHHc-CCceeecCCCCC--------------CHH------HHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKM--AHPEGEYATARAASAA-GTIMTLSSWSTS--------------SVE------EVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~--~~~~~e~~la~aa~~~-G~~~~~s~~~~~--------------~~e------ei~ 118 (370)
..+|.+.++++.|++|||+.... ..| .+..+.--.+.+ |+.+++++.... +.+ .+.
T Consensus 19 P~~ig~~~l~NRiv~aPm~~~~a~~g~p-t~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 97 (376)
T 1icp_A 19 PCKMGKFELCHRVVLAPLTRQRSYGYIP-QPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIV 97 (376)
T ss_dssp CEEETTEEESCSEEECCCCCCCCGGGSC-CHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCcCcCcCCCCCC-CHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCCHHHHHHHHHHH
Confidence 47788999999999999986531 122 233322222233 667777654221 122 222
Q ss_pred c---cCCCceEEEEeec-------------------------------------CCh------------HHHHHHHHHHH
Q 017492 119 S---TGPGIRFFQLYVY-------------------------------------KDR------------NVVAQLVRRAE 146 (370)
Q Consensus 119 ~---~~~~~~~~Qly~~-------------------------------------~d~------------~~~~~~l~ra~ 146 (370)
+ ......++||+-. ..+ +...+..++|+
T Consensus 98 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~ 177 (376)
T 1icp_A 98 DAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAI 177 (376)
T ss_dssp HHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1235678999741 011 34556677888
Q ss_pred HcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC-
Q 017492 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK- 225 (370)
Q Consensus 147 ~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~- 225 (370)
++||+++.||..|.. +-+.|--|. .+.+ ++.-+ +.. . ....+..+.++.+|+.++
T Consensus 178 ~aGfDgVEih~a~Gy-------Ll~qFlsp~-~N~R------------~D~yG-Gsl-e--nR~r~~~eiv~aVr~avg~ 233 (376)
T 1icp_A 178 EAGFDGVEIHGAHGY-------LIDQFMKDQ-VNDR------------SDKYG-GSL-E--NRCRFALEIVEAVANEIGS 233 (376)
T ss_dssp HTTCSEEEEEECTTS-------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHHHHHHHHHHHHHHHHCG
T ss_pred HcCCCEEEEcCccch-------hhhhccCCc-ccCC------------CCccC-ccH-H--HhHHHHHHHHHHHHHHhcC
Confidence 999999999987633 112221111 0000 00000 001 1 123467889999999985
Q ss_pred CcEEEEecCC---------------HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 226 LPILVKGVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 226 ~Pv~vK~v~~---------------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
-||.+|.... .+.++.+.++|+|+|.+++....+...+...+..+.++++.+ ++||++.|||
T Consensus 234 ~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~--~iPvi~~G~i- 310 (376)
T 1icp_A 234 DRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGGY- 310 (376)
T ss_dssp GGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESSC-
T ss_pred CceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHc--CCCEEEeCCC-
Confidence 3999998621 234677889999999997532111000111223456777777 7999999999
Q ss_pred CHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 291 RGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+.+++.++|+.| ||+|++||+++.
T Consensus 311 ~~~~a~~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 311 DREDGNRALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CHHHHHHHHHCCCCcEEeecHHHHh
Confidence 899999999998 999999999985
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-11 Score=117.34 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=81.4
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccC---CCCcc-chHHHHHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMALEE 272 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~---~~~~~-~~~~~l~~ 272 (370)
.+..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++.+-.. ...++ ..++.+.+
T Consensus 203 r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3hgj_A 203 RFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADA 282 (349)
T ss_dssp HHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHH
Confidence 46788999999999 7899999874 3444 678889999999998532111 11122 24567788
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 273 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 273 i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+++.+ ++||++.|||++++++.++|+.| ||+|++||+++.
T Consensus 283 ir~~~--~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 283 VRKRV--GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHHH--CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHc--CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 88877 89999999999999999999999 999999999985
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-11 Score=115.04 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=79.3
Q ss_pred CCccHHHHHHHHHhc--CCcEEEEecCC--------HHH----HHHHHHcCccEEEEccCCccCC---CCcc-chHHHHH
Q 017492 210 RSLSWKDVKWLQTIT--KLPILVKGVLT--------AED----ARIAVQAGAAGIIVSNHGARQL---DYVP-ATIMALE 271 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~--~~Pv~vK~v~~--------~~~----a~~a~~aG~d~I~vs~~gg~~~---~~~~-~~~~~l~ 271 (370)
..|..+.++.+|+.+ +.||.+|+..+ .++ ++.+.++ +|+|.++. |+... ...+ ..++.+.
T Consensus 193 ~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~-g~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3kru_A 193 ARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSS-GGLLNVDINLYPGYQVKYAE 270 (343)
T ss_dssp THHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEEC-CCSSCCCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccC-CceEeeeecccCceeehHHH
Confidence 456788999999999 68999998742 333 6777788 99999974 32211 1111 2456778
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 272 ~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+++.+ ++||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 271 ~ir~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la 312 (343)
T 3kru_A 271 TIKKRC--NIKTSAVGLITTQELAEEILSNERADLVALGRELLR 312 (343)
T ss_dssp HHHHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence 888877 79999999999999999999998 999999999985
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-11 Score=119.28 Aligned_cols=243 Identities=17% Similarity=0.193 Sum_probs=140.2
Q ss_pred eeeecccC--CCCCCccceeE-cCeeecCceeecccccccccCChh---hHHHHHHHHHc-CCceeecCCCC--------
Q 017492 47 LFRPRILI--DVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAA-GTIMTLSSWST-------- 111 (370)
Q Consensus 47 ~l~pr~l~--~~~~vd~s~~l-~g~~l~~Pi~iapm~~~~~~~~~~---e~~la~aa~~~-G~~~~~s~~~~-------- 111 (370)
.|+||... ..+..=...+| .|.++++-|++|||+-.. ..++| +..+.--.+++ |+.+++++...
T Consensus 13 ~~~~~~~~M~~~~~Lf~P~~i~g~~~lkNRiv~aPm~~~~-a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~ 91 (419)
T 3l5a_A 13 GLVPRGSHMYRYKPLLQSIHLPNGIKISNRFVLSPMTVNA-STKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLF 91 (419)
T ss_dssp --------CCTTGGGGSCEECTTSCEESSSEEECCCCCCC-SCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCS
T ss_pred CcccccccccchhhcCCCEEeCCCCEECCCeEeCCCCCCc-cCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccC
Confidence 46676543 34444556788 889999999999997432 22222 22222222222 67777654311
Q ss_pred ------CCH------HHHhcc---CCCceEEEEeecCC--------------------------------h-------HH
Q 017492 112 ------SSV------EEVAST---GPGIRFFQLYVYKD--------------------------------R-------NV 137 (370)
Q Consensus 112 ------~~~------eei~~~---~~~~~~~Qly~~~d--------------------------------~-------~~ 137 (370)
.+. .++.+. .....++||+-... . +.
T Consensus 92 ~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~ 171 (419)
T 3l5a_A 92 EYGFNIDHDACIPGLTNMASTMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQ 171 (419)
T ss_dssp TTCEECSSGGGHHHHHHHHHHHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHH
Confidence 011 122221 12456788863110 0 12
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..+..++|+++||+.+.|+..+-+ |-+.|--|. .+.++ +.-| +..+. ....|..+.+
T Consensus 172 F~~AA~rA~~AGfDgVEIH~ahGY-------Ll~QFlSp~-~N~Rt------------D~yG-Gs~le--nR~Rf~~evv 228 (419)
T 3l5a_A 172 YRDATLRAIKAGFDGVEISIAQRL-------LIQTFFSTF-SNRRT------------DHYG-ADSLK--NRARLCLEVM 228 (419)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCTT-TCCCC------------STTS-TTCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCccch-------HHHHccCCc-ccccc------------cCCC-Cchhh--hhhHHHHHHH
Confidence 234456788899999999987632 222231111 01110 0000 00100 1234678899
Q ss_pred HHHHHhc------CCcEEEEecC----------CHHH----HHHHHH-cCccEEEEccCCcc-----CCCCccc-hHHHH
Q 017492 218 KWLQTIT------KLPILVKGVL----------TAED----ARIAVQ-AGAAGIIVSNHGAR-----QLDYVPA-TIMAL 270 (370)
Q Consensus 218 ~~ir~~~------~~Pv~vK~v~----------~~~~----a~~a~~-aG~d~I~vs~~gg~-----~~~~~~~-~~~~l 270 (370)
+.+|+.+ +.||.+|+.. +.++ ++.+.+ +|+|+|.|++.+.. +...+.. .+..+
T Consensus 229 ~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a 308 (419)
T 3l5a_A 229 RAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVN 308 (419)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHH
T ss_pred HHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHH
Confidence 9999987 6799999753 3433 677888 99999999864321 1111111 23456
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+++.+.+++|||+.|||++++++.++|+. ||+|++||+++.
T Consensus 309 ~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 309 QIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp HHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 6777777557999999999999999999999 999999999974
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-11 Score=125.45 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=141.0
Q ss_pred ceeEcCeeecCceeecccccccccCCh-hh--HHHHHHHHHcCCceeecCCCCC--------------CHH------HHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-GE--YATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~-~e--~~la~aa~~~G~~~~~s~~~~~--------------~~e------ei~ 118 (370)
..+|.+.+++++|++|||+...-..+. .+ ...-+.-++.|+.++++++.+. +.+ ++.
T Consensus 8 p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (671)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHH
Confidence 467888999999999999853211121 12 2222223356777777654211 111 222
Q ss_pred c---cCCCceEEEEeec----------------------CCh-----------HHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 119 S---TGPGIRFFQLYVY----------------------KDR-----------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 119 ~---~~~~~~~~Qly~~----------------------~d~-----------~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+ ....+.++||+-. ..+ +...+..++|+++||+++.||..+.+
T Consensus 88 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gy- 166 (671)
T 1ps9_A 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGY- 166 (671)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTS-
T ss_pred HHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-
Confidence 1 1235689999742 111 34556667888899999999987643
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEecC------
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL------ 234 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v~------ 234 (370)
+-+.|--|. .+.+ ++.-+ +.. . ....+..+.++.+|+.+ +.||++|+..
T Consensus 167 ------l~~qFlsp~-~n~r------------~d~yG-gs~-~--~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~ 223 (671)
T 1ps9_A 167 ------LINEFLTLR-TNQR------------SDQWG-GDY-R--NRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (671)
T ss_dssp ------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred ------HHHHhCCCc-cCCC------------cCcCC-CcH-H--HHHHHHHHHHHHHHHHcCCCceEEEEECccccCCC
Confidence 122221121 0000 00000 001 1 12346788999999998 7899999862
Q ss_pred --CHH----HHHHHHHcCccEEEEccCCccC------CCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh
Q 017492 235 --TAE----DARIAVQAGAAGIIVSNHGARQ------LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 235 --~~~----~a~~a~~aG~d~I~vs~~gg~~------~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal 301 (370)
+.+ .++.+.++|+|+|.+++....+ ....+. .++.+.++++.+ ++||++.|||.+++++.++++.
T Consensus 224 g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~ 301 (671)
T 1ps9_A 224 GGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSR 301 (671)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHc
Confidence 333 3677889999999997521111 011111 245666666655 8999999999999999999999
Q ss_pred C-CCEEEEcHHHHH
Q 017492 302 G-ASGIFIGRPVVY 314 (370)
Q Consensus 302 G-Ad~V~igr~~l~ 314 (370)
| ||+|++||+++.
T Consensus 302 g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 302 GDADMVSMARPFLA 315 (671)
T ss_dssp TSCSEEEESTHHHH
T ss_pred CCCCEEEeCHHHHh
Confidence 8 999999999985
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-10 Score=104.85 Aligned_cols=170 Identities=15% Similarity=0.031 Sum_probs=112.8
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEE---eec----CChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL---YVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Ql---y~~----~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
-..+|+++.+.|+..+. ..+...++++++...-|.+-+. |.. -++ ..+.++.+.++|++.+.+.. ...
T Consensus 38 ~~~~A~a~~~~Ga~~i~-~~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~--~~~~i~~~~~~Gad~V~l~~--~~~ 112 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVR-IEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITP--FLDDVDALAQAGAAIIAVDG--TAR 112 (232)
T ss_dssp HHHHHHHHHHTTCSEEE-EESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEEC--CSS
T ss_pred HHHHHHHHHHCCCeEEE-ECCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCc--cHHHHHHHHHcCCCEEEECc--ccc
Confidence 35799999999988543 2221223344444333332111 100 011 23346677889999887642 100
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
.+|....+.++.+++. ++++++ .+.+.++++.+
T Consensus 113 ---------------------------------------------~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a 145 (232)
T 3igs_A 113 ---------------------------------------------QRPVAVEALLARIHHH-HLLTMA-DCSSVDDGLAC 145 (232)
T ss_dssp ---------------------------------------------CCSSCHHHHHHHHHHT-TCEEEE-ECCSHHHHHHH
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHC-CCEEEE-eCCCHHHHHHH
Confidence 1222334566777664 677665 47899999999
Q ss_pred HHcCccEEEEccCCccCC-CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 243 VQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.++|+|.|.+.++|.+.. ....+.++.+.++++. ++||++.|||.+++|+.+++++|||+|++|++++.
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 146 QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 999999997766654321 1234578888888764 79999999999999999999999999999999874
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=106.46 Aligned_cols=172 Identities=16% Similarity=0.036 Sum_probs=113.1
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEE---EEeecCCh--HHHHHHHHHHHHcCCcEEEEecCCCCCcc
Q 017492 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFF---QLYVYKDR--NVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~---Qly~~~d~--~~~~~~l~ra~~~G~~ai~itvd~p~~g~ 164 (370)
-..+|+++.+.|+..+-. .+...++++++...-|.+- +-|...+. ....+.++.+.++|++.+.+.. ...
T Consensus 38 ~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~--~~~-- 112 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRI-EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA--SFR-- 112 (229)
T ss_dssp HHHHHHHHHHTTCSEEEE-ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC--CSS--
T ss_pred HHHHHHHHHHCCCcEEEE-CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECc--ccc--
Confidence 357999999999886442 2212233444443333221 11110000 0123346677889999886642 110
Q ss_pred hhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHH
Q 017492 165 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 244 (370)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~ 244 (370)
.++....+.++.+++. +.++++ .+.+.++++.+.+
T Consensus 113 -------------------------------------------~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~ 147 (229)
T 3q58_A 113 -------------------------------------------SRPVDIDSLLTRIRLH-GLLAMA-DCSTVNEGISCHQ 147 (229)
T ss_dssp -------------------------------------------CCSSCHHHHHHHHHHT-TCEEEE-ECSSHHHHHHHHH
T ss_pred -------------------------------------------CChHHHHHHHHHHHHC-CCEEEE-ecCCHHHHHHHHh
Confidence 1122334567777664 677665 4789999999999
Q ss_pred cCccEEEEccCCccCC-CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 245 AGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 245 aG~d~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+|+|.|.+.++|.+.. ....+.++.+.++++. ++||++.|||.+++|+.+++++|||+|++|++++.
T Consensus 148 ~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 148 KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 9999997766654321 1234577888887763 79999999999999999999999999999999874
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=104.58 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=79.8
Q ss_pred HHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCC--ccchHHHHHHHHHHccCCCcEEEecC
Q 017492 214 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~--~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.++++++.+ +.++++ .+.+++++..+.++|+|+|.++++|.+. .+. ..+.++.+.++++.+ ++||+++||
T Consensus 107 ~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecC
Confidence 56789999887 566654 5788999999999999999888776542 122 345677888888876 799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
|++++|+.+++++|||+|++||+++
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHc
Confidence 9999999999999999999999965
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-11 Score=126.43 Aligned_cols=226 Identities=12% Similarity=0.095 Sum_probs=138.2
Q ss_pred ceeEcCeeecCceeecccccccc-cCChhhHHHHHHHHHcCCceeecCCCC-------C--------CHH------HHhc
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWST-------S--------SVE------EVAS 119 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~-~~~~~e~~la~aa~~~G~~~~~s~~~~-------~--------~~e------ei~~ 119 (370)
..+|.+.+++++|++|||+...- ..|.-....-+.-++-|+.+++++..+ . +.+ ++.+
T Consensus 12 p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (729)
T 1o94_A 12 PIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTD 91 (729)
T ss_dssp CEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHH
Confidence 46788999999999999975421 112111122222235677777754311 0 112 2221
Q ss_pred ---cCCCceEEEEeecC-----------------------C---------------hHHHHHHHHHHHHcCCcEEEEecC
Q 017492 120 ---TGPGIRFFQLYVYK-----------------------D---------------RNVVAQLVRRAERAGFKAIALTVD 158 (370)
Q Consensus 120 ---~~~~~~~~Qly~~~-----------------------d---------------~~~~~~~l~ra~~~G~~ai~itvd 158 (370)
....+.++||+-.. + .+...+..++|+++||+++.||..
T Consensus 92 ~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a 171 (729)
T 1o94_A 92 EVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGA 171 (729)
T ss_dssp HHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 12256889997520 0 134456667888899999999987
Q ss_pred CCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEecC--
Q 017492 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL-- 234 (370)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v~-- 234 (370)
|.+ +-+.|--|. .+.+ ++.-| +.. . ....|..++++.+|+.+ +.||++|+..
T Consensus 172 ~gy-------Ll~qFlsp~-~N~R------------~D~yG-Gs~-e--nR~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 172 HSY-------LPLQFLNPY-YNKR------------TDKYG-GSL-E--NRARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp TTC-------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred cch-------HHHHhcCCc-cCCC------------cCcCC-CCH-H--HHhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 733 222331121 0100 00000 011 1 23457889999999999 7999999852
Q ss_pred -------C-HHH----HHHHHHcCccEEEEccCCc-----cC---CCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 235 -------T-AED----ARIAVQAGAAGIIVSNHGA-----RQ---LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 235 -------~-~~~----a~~a~~aG~d~I~vs~~gg-----~~---~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+ .++ ++.+. .|+|.+.+++.+. .. ...... .+.....+++.+ ++|||+.|||.+++
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~-~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~ 304 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMAD-SLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPE 304 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHG-GGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEECCSCCCCHH
T ss_pred CcCCCCCCchHHHHHHHHHHH-hhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC--CCEEEEeCCCCCHH
Confidence 1 222 44444 4899999975321 00 011111 355667777766 89999999999999
Q ss_pred HHHHHHHhC-CCEEEEcHHHHH
Q 017492 294 DVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.++|+.| ||+|++||+++.
T Consensus 305 ~a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 305 KMIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp HHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHCCCCCEEEeCchhhc
Confidence 999999998 999999999874
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-10 Score=120.84 Aligned_cols=226 Identities=13% Similarity=0.038 Sum_probs=138.8
Q ss_pred ceeEcCeeecCceeecccccccccCChhh--HHHHHHHHHcCCceeecCCCCC---------------CH------HHHh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWSTS---------------SV------EEVA 118 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~e--~~la~aa~~~G~~~~~s~~~~~---------------~~------eei~ 118 (370)
..+|.+.+++++|++|||+... ..+..+ ....+..++-|+.++++++... +. .++.
T Consensus 17 p~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (690)
T 3k30_A 17 PVQIGPFTTKNRFYQVPHCNGM-GYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIA 95 (690)
T ss_dssp CCEETTEECSSSEEECCCCCSC-SSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHH
T ss_pred CeeECCEEECCCeEeCCCcCCC-CCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHH
Confidence 4778899999999999997432 222212 1244455667887777654211 11 1122
Q ss_pred c---cCCCceEEEEeecC-------------------------C---------------hHHHHHHHHHHHHcCCcEEEE
Q 017492 119 S---TGPGIRFFQLYVYK-------------------------D---------------RNVVAQLVRRAERAGFKAIAL 155 (370)
Q Consensus 119 ~---~~~~~~~~Qly~~~-------------------------d---------------~~~~~~~l~ra~~~G~~ai~i 155 (370)
+ ....+.++||+-.. . .+...+..++|+++||+.+.|
T Consensus 96 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVei 175 (690)
T 3k30_A 96 DAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYV 175 (690)
T ss_dssp HHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 12256789998310 0 144456667888999999999
Q ss_pred ecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEec
Q 017492 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGV 233 (370)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v 233 (370)
|..+++. |-+.|--|. .+.+ ++.-| +.. +....|..+.++.+|+.+ +.||.+|+.
T Consensus 176 h~a~gy~------L~~qFlsp~-~N~R------------~D~yG-Gs~---enR~r~~~ei~~avr~~~g~~~~v~~r~s 232 (690)
T 3k30_A 176 YGAHGYS------GVHHFLSKR-YNQR------------TDEYG-GSL---ENRMRLLRELLEDTLDECAGRAAVACRIT 232 (690)
T ss_dssp EECTTCS------HHHHHHCTT-TCCC------------CSTTS-SSH---HHHTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cccccch------HHHHhCCCc-cCCC------------ccccC-CCH---HHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 9876541 122232121 0111 00000 011 123456789999999998 679999985
Q ss_pred C--------CHHH----HHHHHHcCccEEEEccCCc---c--CCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 234 L--------TAED----ARIAVQAGAAGIIVSNHGA---R--QLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 234 ~--------~~~~----a~~a~~aG~d~I~vs~~gg---~--~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
. +.++ ++.+.+ |+|.|.|+..+- . ...... ..+.....+++.+ ++|||+.|||++++++
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a 309 (690)
T 3k30_A 233 VEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT--TKPVVGVGRFTSPDAM 309 (690)
T ss_dssp CCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC--SSCEEECSCCCCHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc--CCeEEEeCCCCCHHHH
Confidence 2 2344 445545 899999975321 0 001111 1234556666665 8999999999999999
Q ss_pred HHHHHhC-CCEEEEcHHHHH
Q 017492 296 FKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 296 ~kalalG-Ad~V~igr~~l~ 314 (370)
.++|+.| ||+|++||+++.
T Consensus 310 ~~~l~~g~~d~v~~gR~~~~ 329 (690)
T 3k30_A 310 VRQIKAGILDLIGAARPSIA 329 (690)
T ss_dssp HHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHCCCcceEEEcHHhHh
Confidence 9999998 999999999874
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-10 Score=108.03 Aligned_cols=94 Identities=15% Similarity=-0.013 Sum_probs=75.3
Q ss_pred CCccHHHHHHHHHhcC-CcEEEEecCC-----------HH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 210 RSLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~-~Pv~vK~v~~-----------~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
..|..+.++.+|+.++ -||.+|+... .+ .++.+.++|+|+|.+++.. .++ ..+..+
T Consensus 211 ~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~i 282 (361)
T 3gka_A 211 ARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF-----GGD---AIGQQL 282 (361)
T ss_dssp SHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----STT---CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----CCH---HHHHHH
Confidence 4567889999999984 3999998642 22 3677889999999997632 112 345667
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 283 k~~~--~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 283 KAAF--GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp HHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHc--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 7777 7899999999 999999999998 999999999985
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-10 Score=107.78 Aligned_cols=94 Identities=19% Similarity=0.059 Sum_probs=75.1
Q ss_pred CCccHHHHHHHHHhcC-CcEEEEecCC-----------HHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 210 RSLSWKDVKWLQTITK-LPILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~-~Pv~vK~v~~-----------~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
..|..+.++.+|+.++ -||.+|+... .++ ++.+.++|+|+|.+++.. .++ ..+..+
T Consensus 203 ~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~i 274 (362)
T 4ab4_A 203 ARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD---SIGPLI 274 (362)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT---CCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH---HHHHHH
Confidence 3467889999999984 3999998632 223 677889999999997632 112 245667
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 275 k~~~--~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 275 KEAF--GGPYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp HHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 7777 7899999999 999999999998 999999999985
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-10 Score=100.70 Aligned_cols=94 Identities=24% Similarity=0.271 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..+.++.+++.++ |+++|.+ .+.++ ++.+.++|+|+|.++ +|. ..+..+++.+..+++.+++++||
T Consensus 104 ~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~ts-tg~---~~gga~~~~i~~v~~~v~~~ipV 178 (225)
T 1mzh_A 104 VVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTS-TGF---APRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp HHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC-CSC---SSSCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEC-CCC---CCCCCCHHHHHHHHHHhCCCCcE
Confidence 4567999999888 9999984 34433 778899999999554 332 12346788888888887668999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+++|||++++|+.+++.+|||.|++++.
T Consensus 179 ia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 179 KASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 9999999999999999999998888864
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-09 Score=96.60 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=114.1
Q ss_pred ceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceee-cC-CC---CCCHHHHhccCC---CceEEEEeecC
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SS-WS---TSSVEEVASTGP---GIRFFQLYVYK 133 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-s~-~~---~~~~eei~~~~~---~~~~~Qly~~~ 133 (370)
.++|.|++|+.|++++.-+. |+.+. +.++..+.|+.++. +- .+ ..+++++.+..+ .+...+.....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~~-~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFDI-QKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHHH-HHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHHH-HHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 47899999999999998654 32332 34677777866543 21 11 223444443332 12222321123
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.....++.++++|...+ ++++.... .|. ...-.
T Consensus 77 ~~~~~~~f~~~a~~agg~~~-i~l~i~~d------------~~~-------------------------------~~~e~ 112 (264)
T 1xm3_A 77 TAEEAVRIARLAKASGLCDM-IKVEVIGC------------SRS-------------------------------LLPDP 112 (264)
T ss_dssp SHHHHHHHHHHHHHTTCCSS-EEECCBCC------------TTT-------------------------------CCBCH
T ss_pred CHHHHHHHHHHHHHcCCCCe-EEEeecCC------------Ccc-------------------------------cccch
Confidence 34433345666666643222 22222100 000 00001
Q ss_pred HHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 214 WKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.+.++..++.+ ++.++.-...+.+.++++.+.|+|+|...+. -|+. .+..+.+.+..+++.. ++||++.|||+
T Consensus 113 ~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~ 188 (264)
T 1xm3_A 113 VETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIG 188 (264)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCC
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCC
Confidence 23455555543 5555544456788999999999999943221 1211 1233466778777754 89999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++|+.+++++|||+|.+|++++.
T Consensus 189 t~eda~~~~~~GAdgViVGSAi~~ 212 (264)
T 1xm3_A 189 SPKDAAYAMELGADGVLLNTAVSG 212 (264)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEcHHHhC
Confidence 999999999999999999999874
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-10 Score=109.50 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC---------CHHH----HHHHHHcCccEEEEccCCccC---CCCcc-chHHHHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMALE 271 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~---------~~~~----a~~a~~aG~d~I~vs~~gg~~---~~~~~-~~~~~l~ 271 (370)
.|..+.++.+|+.+ +.||.+|+.. +.++ ++.+.++|+|+|.+++.+-.. ...++ ..++.+.
T Consensus 209 r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 288 (363)
T 3l5l_A 209 RFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAE 288 (363)
T ss_dssp HHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHH
Confidence 46788999999998 5899999863 2233 678889999999998632111 11122 2456777
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 272 ~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+++.+ ++||++.|||++++++.++|+.| ||+|++||+++.
T Consensus 289 ~ir~~~--~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 289 RVRREA--KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHHHH--TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHHHc--CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 888877 79999999999999999999999 999999999985
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=123.96 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=125.5
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCC--CceEEEEeecC
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP--GIRFFQLYVYK 133 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~--~~~~~Qly~~~ 133 (370)
|++||+ .||+.+||+... .+..|+.|+.++|....++.....+.|++. +..+ .++.+++....
T Consensus 584 t~llg~---~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~ 655 (2051)
T 2uv8_G 584 SKLIGR---PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVN 655 (2051)
T ss_dssp HHHHSS---CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTC
T ss_pred HHhhCc---cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecC
Confidence 447883 699999998332 244799999999999888544445555432 2122 46777765432
Q ss_pred Ch--HHHHHHHHHHHHcCCcE--EEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 134 DR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 134 d~--~~~~~~l~ra~~~G~~a--i~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
.. ....++++.+.+.|+.. +.+..+.|
T Consensus 656 ~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p------------------------------------------------- 686 (2051)
T 2uv8_G 656 PFMLQWGIPLIKELRSKGYPIQFLTIGAGVP------------------------------------------------- 686 (2051)
T ss_dssp TTHHHHHHHHHHHHHHTTCSEEEEEEESSCC-------------------------------------------------
T ss_pred hhhhhhhHHHHHHHHHcCCCcceEEecCCCC-------------------------------------------------
Confidence 22 12237788888889887 33322111
Q ss_pred CCccHHHHHHHHHhcCCcEEEEecCC---HHHHHHHHHcCccEE---EEccC--CccC--CCCccchHHHHHHHHHHccC
Q 017492 210 RSLSWKDVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGI---IVSNH--GARQ--LDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK~v~~---~~~a~~a~~aG~d~I---~vs~~--gg~~--~~~~~~~~~~l~~i~~~~~~ 279 (370)
.++....+.+.++++++..-..+ ...+..+.++|+|++ ++.|. ||+. .|...+++..++++++++
T Consensus 687 ---~~~~~~~~i~~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~-- 761 (2051)
T 2uv8_G 687 ---SLEVASEYIETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP-- 761 (2051)
T ss_dssp ---CHHHHHHHHHHSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT--
T ss_pred ---chhhHHHHHHHcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC--
Confidence 12222222233388887643333 345677888999993 33332 4431 123355666788888876
Q ss_pred CCcEEEecCCCCHHHHHHHH-----------HhCCCEEEEcHHHHHHH
Q 017492 280 RIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSL 316 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~~ 316 (370)
+||||+.|||.+|.+++.+| +||||+|+||+.|+..-
T Consensus 762 ~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~ 809 (2051)
T 2uv8_G 762 NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAK 809 (2051)
T ss_dssp TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTST
T ss_pred CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCc
Confidence 89999999999999999999 89999999999998643
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=95.64 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++...+.|++.|.+.+ |.+ -|- .+.+..+ .+....+........
T Consensus 31 P~~~~~~~~~~~l~~~GaD~iElGi--PfS------------DP~---------aDGpvIq----~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 31 PNPEQSLAIMQTLIDAGADALELGM--PFS------------DPL---------ADGPTIQ----GANLRALAAKTTPDI 83 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEEC--CCC------------CGG---------GCCSHHH----HHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCC---------CCCHHHH----HHHHHHHHcCCCHHH
Confidence 4568889999999999999988753 421 110 0000011 111122222112223
Q ss_pred cHHHHHHHHHh-cCCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCcc--------C--
Q 017492 213 SWKDVKWLQTI-TKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR--------Q-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~-~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg~--------~-- 259 (370)
.++.++++|+. .++|+++.+..+ .+.++.+.++|+|++++.. ||-. .
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 163 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASD 163 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 57789999988 789999876533 2458899999999988842 1100 0
Q ss_pred ------------------CC--Ccc-----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------------------LD--YVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------------------~~--~~~-----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.. +|. . ..+.+.++++.. ++||++.+||++++++.+++..|||+|.+|++++
T Consensus 164 eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 164 ETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp HHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 00 111 1 124566666654 7999999999999999889999999999999999
Q ss_pred HHHHhc--CHHHHHHHHHHHHHHHHH
Q 017492 314 YSLAAE--GEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 314 ~~~~~~--G~~~v~~~l~~l~~el~~ 337 (370)
..+... ..+...+.+..+.++|+.
T Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~l~~ 267 (271)
T 3nav_A 242 KIIETHLDNPAKQLTELANFTQAMKK 267 (271)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHH
Confidence 866532 222222334455555553
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-09 Score=94.24 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEE--EEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI--IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I--~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
..+.++.+++.+ +.++++ .+.++++++.+.++|+|+| .+.+..........+.++.+.++++. ++||+++|||
T Consensus 120 ~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~---~ipvia~GGI 195 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA---GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---TCCEEEESCC
T ss_pred HHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC---CCCEEEECCC
Confidence 356788898887 566654 4678899999999999999 45432111111224466777777764 6999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
++.+|+.+++++|||+|++||+++.
T Consensus 196 ~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CCHHHHHHHHHCCCCEEEEchHHhC
Confidence 9999999999999999999998763
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-08 Score=94.12 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.+.++..+++|++.|-+. .|. +-|-- +.+..+ ......+.........
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElg--iPf------------SDP~a---------DGp~Iq----~a~~~AL~~G~~~~~~ 82 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELG--FPF------------SDPLA---------DGPVIQ----GANLRSLAAGTTSSDC 82 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEE--CCC------------SCCTT---------CCHHHH----HHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC--CCC------------CCCCC---------CCHHHH----HHHHHHHHcCCCHHHH
Confidence 34889999999999999988775 342 11210 000000 1111122211111224
Q ss_pred HHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc---------C--
Q 017492 214 WKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR---------Q-- 259 (370)
Q Consensus 214 ~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~---------~-- 259 (370)
++.++++|+. .++|+++.+..++ ..++.+.++|+|++++.. ||-. .
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~e 162 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADAD 162 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 6789999988 7999998765443 358899999999998842 1100 0
Q ss_pred -----------------CC--Ccc------chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 -----------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 -----------------~~--~~~------~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.. +|. ...+.+.++++.. ++||++.|||++++++.+++..|||+|.+|++++.
T Consensus 163 ri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 163 TLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp HHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 111 1224556665544 79999999999999998899999999999999988
Q ss_pred HHHhc--CHHHHHHHHHHHHHHHH
Q 017492 315 SLAAE--GEKGVRRVLEMLREEFE 336 (370)
Q Consensus 315 ~~~~~--G~~~v~~~l~~l~~el~ 336 (370)
.+... ..+...+.+..+.++|+
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~l~ 264 (267)
T 3vnd_A 241 IIEAHQHDEATLLAKLAEFTTAMK 264 (267)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHHHHHH
Confidence 66532 12222233455555554
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-08 Score=91.44 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=82.0
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHH---HHHHHHcCccEEEEccCC--------------c----------cC-----
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAED---ARIAVQAGAAGIIVSNHG--------------A----------RQ----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~---a~~a~~aG~d~I~vs~~g--------------g----------~~----- 259 (370)
...+.++++|+.+++|+++....++.. .+.+.++|+|++++.... | +.
T Consensus 81 ~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~ 160 (262)
T 1rd5_A 81 AVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMK 160 (262)
T ss_dssp HHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHH
Confidence 346778899988889988754333321 334888899988875311 0 00
Q ss_pred --------------CC--Cc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 260 --------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 260 --------------~~--~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
.. +| +...+.+.++++.. ++||++.|||++++++.+++.+|||+|.+|++++....
T Consensus 161 ~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~ 238 (262)
T 1rd5_A 161 EITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLG 238 (262)
T ss_dssp HHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHH
Confidence 00 11 11334667777665 79999999999999999999999999999999987653
Q ss_pred h-cCHHHHHHHHHHHHHHHHH
Q 017492 318 A-EGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 318 ~-~G~~~v~~~l~~l~~el~~ 337 (370)
. ...+...+.+..+.++|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~ 259 (262)
T 1rd5_A 239 EAASPKQGLRRLEEYARGMKN 259 (262)
T ss_dssp SSSSHHHHHHHHHHHHHHHHH
T ss_pred hccChhHHHHHHHHHHHHHHH
Confidence 2 2222222345555555554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=93.56 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccH
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (370)
.+.+.+.++..++.|++.|.+. .|.. -|. .+.+.. .......+..........
T Consensus 30 ~~~~~~~~~~l~~~GaD~ieig--~P~s------------dp~---------~DG~~i----~~a~~~al~~G~~~~~~~ 82 (268)
T 1qop_A 30 IEQSLKIIDTLIDAGADALELG--VPFS------------DPL---------ADGPTI----QNANLRAFAAGVTPAQCF 82 (268)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEE--CCCS------------CCT---------TCCHHH----HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEC--CCCC------------Ccc---------CCCHHH----HHHHHHHHHcCCCHHHHH
Confidence 3778888999999999998774 4432 010 000000 001111111111112346
Q ss_pred HHHHHHHHh-cCCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCcc---------C---
Q 017492 215 KDVKWLQTI-TKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR---------Q--- 259 (370)
Q Consensus 215 ~~i~~ir~~-~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg~---------~--- 259 (370)
+.++++|+. .++||++-...+ .+.++.+.++|+|+|++.. ||-. .
T Consensus 83 ~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~ 162 (268)
T 1qop_A 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDL 162 (268)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence 789999999 799987632222 3668889999999998852 1100 0
Q ss_pred ----------------CC--Cc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 260 ----------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 260 ----------------~~--~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.. +| +...+.+.++++.. ++||+++|||++++++.+++..|||+|.+|++++..
T Consensus 163 i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 163 LRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp HHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 00 11 11246677777655 799999999999999999999999999999999876
Q ss_pred HH
Q 017492 316 LA 317 (370)
Q Consensus 316 ~~ 317 (370)
..
T Consensus 241 ~~ 242 (268)
T 1qop_A 241 IE 242 (268)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-08 Score=87.69 Aligned_cols=161 Identities=11% Similarity=0.052 Sum_probs=88.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+...++++.+.+.|++.+.+++.+|..-.-.+.+|..+.-...+....+. ... -....... ..+
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~-----~~~-----~~~~a~~~--Gad 85 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVT-----SVE-----QCRKAVES--GAE 85 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCC-----SHH-----HHHHHHHH--TCS
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEecccC-----CHH-----HHHHHHHc--CCC
Confidence 567788888899999999999999887653211122233222100000000000 000 00000000 011
Q ss_pred cc--HHHHHHHHH---hcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 212 LS--WKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 212 ~~--~~~i~~ir~---~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+. ...-..+.+ ..++|++. ++.+++++..+.++|+|.|.+... .......+.++++.++ ++||+++
T Consensus 86 ~iv~~~~~~~~~~~~~~~g~~vi~-g~~t~~e~~~a~~~Gad~vk~~~~-------~~~g~~~~~~l~~~~~-~~pvia~ 156 (205)
T 1wa3_A 86 FIVSPHLDEEISQFCKEKGVFYMP-GVMTPTELVKAMKLGHTILKLFPG-------EVVGPQFVKAMKGPFP-NVKFVPT 156 (205)
T ss_dssp EEECSSCCHHHHHHHHHHTCEEEC-EECSHHHHHHHHHTTCCEEEETTH-------HHHHHHHHHHHHTTCT-TCEEEEB
T ss_pred EEEcCCCCHHHHHHHHHcCCcEEC-CcCCHHHHHHHHHcCCCEEEEcCc-------cccCHHHHHHHHHhCC-CCcEEEc
Confidence 11 111111111 12455543 445666777777777777766321 0112345566555443 7999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|||. .+++.+++.+||++|.+||.++.
T Consensus 157 GGI~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 157 GGVN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp SSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred CCCC-HHHHHHHHHCCCCEEEECccccC
Confidence 9996 78999999999999999999874
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=92.14 Aligned_cols=120 Identities=22% Similarity=0.266 Sum_probs=85.4
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-------HHHHHHHHHcCccEEEEccC---------------Cc---------cC--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~~---------------gg---------~~-- 259 (370)
..+.++++|+.+++||.+.+..+ .+.++.+.++|+|+|++..- |- +.
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e 147 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDE 147 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHH
Confidence 47789999999999999887544 36789999999999998631 10 00
Q ss_pred --------CC-----------Cc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 --------LD-----------YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 --------~~-----------~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+ .+ +..++.+.++++.. ++||+++|||++++|+.+++.+|||+|.+|++++.
T Consensus 148 ~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~ 225 (248)
T 1geq_A 148 RLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp HHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 01 01 11245667777665 79999999999999999999999999999999987
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el 335 (370)
...... +.+.++++.+++.|
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~ 245 (248)
T 1geq_A 226 IIGEKG-REATEFLKKKVEEL 245 (248)
T ss_dssp HHHHHG-GGCHHHHHHHHHHH
T ss_pred hHhhCh-HHHHHHHHHHHHHh
Confidence 532112 44444555554444
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=98.62 Aligned_cols=97 Identities=6% Similarity=-0.131 Sum_probs=74.6
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecCC-----------HH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHH
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~~-----------~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~ 274 (370)
.+..+.++.+|+.++ -||.+|+... .+ .++.+.++|+|+|.+++.+... ...+ .+ +.+++
T Consensus 228 r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~-~~-~~~ir 303 (379)
T 3aty_A 228 QLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIG-DV-VAWVR 303 (379)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCC-CH-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCcc-HH-HHHHH
Confidence 467889999999985 4899997641 22 3677788999999997632111 1112 24 66777
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 304 ~~~--~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 304 GSY--SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp TTC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHC--CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence 766 7999999999 999999999998 999999999985
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=99.71 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=88.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccC---C--------------------ccCCC-------CccchHHHHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH---G--------------------ARQLD-------YVPATIMALEEVV 274 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~---g--------------------g~~~~-------~~~~~~~~l~~i~ 274 (370)
++++++. +.+++++..+.++|+|+|.+.+. | |.... ..++.++.+.+++
T Consensus 125 ~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~ 203 (297)
T 2zbt_A 125 KVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH 203 (297)
T ss_dssp SSCEEEE-ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred CceEEee-cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH
Confidence 6777654 56888999999999999988521 0 10000 0123456677777
Q ss_pred HHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 275 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 275 ~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
+.. ++|++ ++|||++++|+.+++.+|||+|++||+++.+ .. ....++.+++.++.++...++.++.++.+
T Consensus 204 ~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~---~d---p~~~~~~l~~~i~~~~~~~~~~~~~~~~g 275 (297)
T 2zbt_A 204 DHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS---GD---PRKRARAIVRAVAHYNDPEVLAEVSEDLG 275 (297)
T ss_dssp HHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHHHHHHHTTCC
T ss_pred Hhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC---CC---HHHHHHHHHHHHHHHhchHhhhHHHHhcC
Confidence 765 78888 9999999999999999999999999998742 11 24566777777877777777778888876
Q ss_pred cc
Q 017492 353 DH 354 (370)
Q Consensus 353 ~~ 354 (370)
..
T Consensus 276 ~~ 277 (297)
T 2zbt_A 276 EP 277 (297)
T ss_dssp CC
T ss_pred ce
Confidence 55
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-09 Score=122.23 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=131.6
Q ss_pred eeeecccCCC-CC--Cccc-eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-----
Q 017492 47 LFRPRILIDV-SK--IDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV----- 117 (370)
Q Consensus 47 ~l~pr~l~~~-~~--vd~s-~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei----- 117 (370)
.|.|+..+.- .. .++. +++|| ..||+.+||++.. . .-.|+.+..++|....++.....+.+++
T Consensus 402 ~f~P~l~~~~~g~~~~~t~~~~~lg---~~PIi~a~M~~~~-s----~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~ 473 (3089)
T 3zen_D 402 SYAPTVVKLPDGSVKLETKFTRLTG---RSPILLAGMTPTT-V----DAKIVAAAANAGHWAELAGGGQVTEQIFNDRIA 473 (3089)
T ss_dssp GGCCEEEECTTCCEEEECHHHHHHS---SCSEEECCCHHHH-T----SHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHH
T ss_pred ccCCcccccCCCcccccchhhhhcC---CCCEEeCCCcCCc-C----CHHHHHHHHhCCCceeecCCCCCCHHHHHHHHH
Confidence 3666655421 22 2332 34677 6899999998653 2 3379999999999999965544455433
Q ss_pred --hccC--CCceEEEEeecCChHH------HHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCcccccccc
Q 017492 118 --ASTG--PGIRFFQLYVYKDRNV------VAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 118 --~~~~--~~~~~~Qly~~~d~~~------~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
.+.. +.++.+++... ++.. ..+.++.+.+.| ++.++++.+.|-. +
T Consensus 474 ~~r~~~~~~~p~~vNl~~~-~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~---e------------------- 530 (3089)
T 3zen_D 474 ELETLLEPGRAIQFNTLFL-DPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDL---E------------------- 530 (3089)
T ss_dssp HHHHHSCTTCCCEEEEECS-CHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCH---H-------------------
T ss_pred HHHHhcCCCCceeechhhc-ChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCch---h-------------------
Confidence 2223 23455555432 2222 146788888899 6668776654410 0
Q ss_pred ccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCcc------EEEEccC--Cc
Q 017492 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA------GIIVSNH--GA 257 (370)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d------~I~vs~~--gg 257 (370)
...+.++.+++ .++.++.=.+.+.++++++.+.|+| +|++.+. ||
T Consensus 531 --------------------------e~~~~i~~l~~-~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGG 583 (3089)
T 3zen_D 531 --------------------------EAVDIIDELNE-VGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGG 583 (3089)
T ss_dssp --------------------------HHHHHHTSTTH-HHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSE
T ss_pred --------------------------HhHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCC
Confidence 00112222332 2444444236788999999999999 7877653 33
Q ss_pred cCCCCccchHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHH-----------HhCCCEEEEcHHHHHHHHh
Q 017492 258 RQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 258 ~~~~~~~~~~~~l~~i~~~~~--~~ipvi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~~~~ 318 (370)
+. +.......+.+....++ .++||++.|||.+++++..++ ++|||+|++|+.|+....+
T Consensus 584 H~--g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea 655 (3089)
T 3zen_D 584 HH--SWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEA 655 (3089)
T ss_dssp EC--CSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTS
T ss_pred CC--CcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCccc
Confidence 32 11233344533333221 379999999999999999999 9999999999999865433
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-09 Score=99.55 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=77.0
Q ss_pred cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-----------------------CCC-------ccchHHHHHHH
Q 017492 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----------------------LDY-------VPATIMALEEV 273 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-----------------------~~~-------~~~~~~~l~~i 273 (370)
++.|+++ .+.+.+++.++.+.|+|.|.+.+..|+. .+. .+..++.+.++
T Consensus 124 ~g~~v~~-~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i 202 (305)
T 2nv1_A 124 YTVPFVC-GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQI 202 (305)
T ss_dssp CSSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHH
T ss_pred cCCcEEE-EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHH
Confidence 3455543 4456666767777777777774321100 000 22345667777
Q ss_pred HHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 274 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 274 ~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
.+.. ++||+ +.|||++++|+.+++.+|||+|++||+++.. +. ....++.+.+.+..++...++.++.++.
T Consensus 203 ~~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~----~~--p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 2nv1_A 203 KKDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS----DN--PAKFAKAIVEATTHFTDYKLIAELSKEL 274 (305)
T ss_dssp HHHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS----SC--HHHHHHHHHHHHHTTTCHHHHHHHTSCC
T ss_pred HHhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC----CC--HHHHHHHHHHHHHHhcChhhHHHHHHHh
Confidence 7654 78998 9999999999999999999999999998742 11 1235566666666665555555555554
Q ss_pred c
Q 017492 352 R 352 (370)
Q Consensus 352 ~ 352 (370)
+
T Consensus 275 g 275 (305)
T 2nv1_A 275 G 275 (305)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-08 Score=90.63 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHh---hhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc--
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-- 213 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 213 (370)
.++.+..++.|+.+|-|..|...++....++ +..+.+|- ..+.+. ... .-..+.....-|.-..
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPv--l~kdfi---id~------~qv~~A~~~GAD~VlLi~ 143 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPV--LRKDFV---VQP------YQIHEARAHGADMLLLIV 143 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCE--EEESCC---CSH------HHHHHHHHTTCSEEEEEG
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCE--EECccc---cCH------HHHHHHHHcCCCEEEEec
Confidence 3456677889999998776655544333333 33344441 111100 000 0011111111122223
Q ss_pred ----HHHHHHHHHh---cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 214 ----WKDVKWLQTI---TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 214 ----~~~i~~ir~~---~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
.+.++++.+. +++.+++ .+.+.+++..+.++|+|.|-+.|... ..-...++.+.++.+.++.++|+++.
T Consensus 144 a~l~~~~l~~l~~~a~~lGl~~lv-ev~t~ee~~~A~~~Gad~IGv~~r~l---~~~~~dl~~~~~l~~~v~~~~pvVae 219 (272)
T 3qja_A 144 AALEQSVLVSMLDRTESLGMTALV-EVHTEQEADRALKAGAKVIGVNARDL---MTLDVDRDCFARIAPGLPSSVIRIAE 219 (272)
T ss_dssp GGSCHHHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHTCSEEEEESBCT---TTCCBCTTHHHHHGGGSCTTSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEE-EcCCHHHHHHHHHCCCCEEEECCCcc---cccccCHHHHHHHHHhCcccCEEEEE
Confidence 1234443333 4666553 46788888888889999888865322 22223445566666666557999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|||++++|+.+++.+||++|.+|++++.
T Consensus 220 gGI~t~edv~~l~~~GadgvlVGsal~~ 247 (272)
T 3qja_A 220 SGVRGTADLLAYAGAGADAVLVGEGLVT 247 (272)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence 9999999999999999999999999985
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.9e-08 Score=89.26 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++++++.++|+|.|-+.|...+ .-...++...++.+.++.++|+++.|||++++|+.++..+||++|.+|++++
T Consensus 177 h~~eEl~~A~~~ga~iIGinnr~l~---t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~alm 253 (272)
T 3tsm_A 177 HDEAEMERALKLSSRLLGVNNRNLR---SFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLM 253 (272)
T ss_dssp CSHHHHHHHTTSCCSEEEEECBCTT---TCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHH
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCc---cCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHc
Confidence 4445555555555555444333221 2123455666777777667999999999999999999999999999999998
Q ss_pred HH
Q 017492 314 YS 315 (370)
Q Consensus 314 ~~ 315 (370)
.+
T Consensus 254 r~ 255 (272)
T 3tsm_A 254 RQ 255 (272)
T ss_dssp TS
T ss_pred CC
Confidence 63
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=88.39 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=104.9
Q ss_pred HHHHHHHHcCCceeecCCCCCCHHHHhccCC--CceEEE-E-eec--CChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017492 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQ-L-YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (370)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~~--~~~~~Q-l-y~~--~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (370)
.+.+.|.+.|...+.-. ..-+....+... +....- + |+. ...+.-...++.|.+.|++.|++.+|..
T Consensus 78 ~lc~eA~~~g~aaVCV~--P~~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig----- 150 (288)
T 3oa3_A 78 VLCAEAKEYGFATVCVR--PDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYP----- 150 (288)
T ss_dssp HHHHHHHHHTCSEEEEC--GGGHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHH-----
T ss_pred HHHHHHHhcCCcEEEEC--HHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehh-----
Confidence 67888888887643311 111222222211 111111 1 221 2344555567778889999998876520
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec-----CCHHH--
Q 017492 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED-- 238 (370)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~-- 238 (370)
... .++.+...++|+.+++.++-| .+|.+ ++.++
T Consensus 151 ------------------------------------~lk--~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~ 191 (288)
T 3oa3_A 151 ------------------------------------WLS--EKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEII 191 (288)
T ss_dssp ------------------------------------HHH--TTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHH
T ss_pred ------------------------------------hhc--CCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHH
Confidence 000 022334667899999988767 46876 45555
Q ss_pred --HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 239 --ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 239 --a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++.+.++|+|+|..|..-+. ....+.....+.++.+..+.+++|.++||||+.+|+++++.+||+.++..+
T Consensus 192 ~A~~ia~eaGADfVKTSTGf~~-~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 192 AGCVLSSLAGADYVKTSTGFNG-PGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp HHHHHHHHTTCSEEECCCSSSS-CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred HHHHHHHHcCCCEEEcCCCCCC-CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 57788999999999842111 011123344455554433568999999999999999999999999666554
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=87.26 Aligned_cols=130 Identities=23% Similarity=0.153 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
..+.-...++.|.+.|++.|++.+|.. ... .++.++.
T Consensus 93 ~~~~Kv~Ea~~Ai~~GAdEIDmViNig-----------------------------------------~lk--~g~~~~v 129 (239)
T 3ngj_A 93 PSEVKAYETKVAVEQGAEEVDMVINIG-----------------------------------------MVK--AKKYDDV 129 (239)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHH-----------------------------------------HHH--TTCHHHH
T ss_pred chHHHHHHHHHHHHcCCCEEEEEeehH-----------------------------------------Hhc--cccHHHH
Confidence 345445567778888999998876521 000 1233445
Q ss_pred HHHHHHHHHhcCCcEEEEec-----CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 214 WKDVKWLQTITKLPILVKGV-----LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-----~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.++|+.+++.++- ..+|.+ ++.++. +.+.++|+|+|..|..-+ .+.++++.+..+++.++++++|.
T Consensus 130 ~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~----~ggAt~~dv~lmr~~vg~~v~VK 204 (239)
T 3ngj_A 130 EKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFG----THGATPEDVKLMKDTVGDKALVK 204 (239)
T ss_dssp HHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHGGGSEEE
T ss_pred HHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCC----CCCCCHHHHHHHHHhhCCCceEE
Confidence 6788899888852 256754 455553 445899999999985311 23456667776777777789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
++||||+.+|+++++.+||+.++..+.
T Consensus 205 asGGIrt~~da~~~i~aGA~riGtS~~ 231 (239)
T 3ngj_A 205 AAGGIRTFDDAMKMINNGASRIGASAG 231 (239)
T ss_dssp EESSCCSHHHHHHHHHTTEEEEEESCH
T ss_pred EeCCCCCHHHHHHHHHhcccceecccH
Confidence 999999999999999999998877654
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=87.01 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...+.++...+.|+++|.+. .|.. -|.- +.+..+ ......+.........
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG--~P~s------------dP~a---------dgp~i~----~a~~~al~~G~~~~~~ 81 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIG--FPFS------------DPVA---------DGPTIQ----VAHEVALKNGIRFEDV 81 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE--CCCS------------CCTT---------SCHHHH----HHHHHHHHTTCCHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEEC--CCCC------------Cccc---------ccHHHH----HHHHHHHHcCCCHHHH
Confidence 45677888889999999999885 3432 0100 000000 0111111111111224
Q ss_pred HHHHHHHHHhc-CCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCcc-----CC-----
Q 017492 214 WKDVKWLQTIT-KLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR-----QL----- 260 (370)
Q Consensus 214 ~~~i~~ir~~~-~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg~-----~~----- 260 (370)
.+.++++|+.+ ++|+++-+..+ .+.++.+.++|+|++++.. ||-. ..
T Consensus 82 ~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~ 161 (262)
T 2ekc_A 82 LELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRK 161 (262)
T ss_dssp HHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHH
T ss_pred HHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 67899999998 89998843323 3567889999999998742 1100 00
Q ss_pred ------------------C--Cc-c-----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 261 ------------------D--YV-P-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 261 ------------------~--~~-~-----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
. .| . . ..+.+.++++.. ++||++.|||++++++.+ +..|||+|.+||+++
T Consensus 162 rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 162 RIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALV 238 (262)
T ss_dssp HHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHH
Confidence 0 00 0 1 124556666654 799999999999999988 889999999999999
Q ss_pred HHHH
Q 017492 314 YSLA 317 (370)
Q Consensus 314 ~~~~ 317 (370)
....
T Consensus 239 ~~~~ 242 (262)
T 2ekc_A 239 KLAG 242 (262)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8653
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=87.41 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.+..+.++++|+.++.+-..||. |+|. +. + + .+--+.++|+
T Consensus 21 ~eqa~iae~aGa~av~~l~~~p~------d~r~-~g---G-------------------------v----~Rm~dp~~I~ 61 (291)
T 3o07_A 21 PEQAKIAEKSGACAVMALESIPA------DMRK-SG---K-------------------------V----CRMSDPKMIK 61 (291)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHH------HHHT-TT---C-------------------------C----CCCCCHHHHH
T ss_pred HHHHHHHHHhCchhhhhccCCCc------hhhh-cC---C-------------------------c----cccCCHHHHH
Confidence 35677889999999999888874 3331 00 0 0 0112577899
Q ss_pred HHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------C-CccC----------------------------
Q 017492 219 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H-GARQ---------------------------- 259 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~-gg~~---------------------------- 259 (370)
+|++.+++||+-|-- ....+|+.+..+|+|.|.-+. | .-+.
T Consensus 62 ~I~~aVsIPVm~k~righ~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrT 141 (291)
T 3o07_A 62 DIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRT 141 (291)
T ss_dssp HHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhCCCCeEEEEecCcHHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEe
Confidence 999999999998863 457788888888888886652 1 0000
Q ss_pred ----------------------------C-C---------CccchHHHHHHHHHHccCCCcE--EEecCCCCHHHHHHHH
Q 017492 260 ----------------------------L-D---------YVPATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKAL 299 (370)
Q Consensus 260 ----------------------------~-~---------~~~~~~~~l~~i~~~~~~~ipv--i~~GGI~~~~dv~kal 299 (370)
+ + .-.++++.+.++++.. ++|| |+.|||.|++|+.+++
T Consensus 142 tge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~--~IPVV~IAnGGI~TpedA~~~l 219 (291)
T 3o07_A 142 KGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG--KLPVVNFAAGGVATPADAALLM 219 (291)
T ss_dssp CCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT--SCSSCEEBCSSCCSHHHHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHcc--CCCEEEecCCCCCCHHHHHHHH
Confidence 0 0 0013456777777765 7888 4689999999999999
Q ss_pred HhCCCEEEEcHHHHH
Q 017492 300 ALGASGIFIGRPVVY 314 (370)
Q Consensus 300 alGAd~V~igr~~l~ 314 (370)
.+|||+|++||.++.
T Consensus 220 e~GaDGVmVGrAI~~ 234 (291)
T 3o07_A 220 QLGCDGVFVGSGIFK 234 (291)
T ss_dssp HTTCSCEEECGGGGG
T ss_pred HhCCCEEEEchHHhC
Confidence 999999999998764
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=87.30 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+..+.+.+. ++.++.-...++..++++.++|++.|..-+. -|+ ..+..+++.+..+++.. ++|||++|||.+
T Consensus 124 tv~aa~~L~~~-Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGGI~T 198 (265)
T 1wv2_A 124 TLKAAEQLVKD-GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGT 198 (265)
T ss_dssp HHHHHHHHHTT-TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCS
T ss_pred HHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCCCCC
Confidence 33444444432 5666544678899999999999999976332 122 12445688888888865 899999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
++|+.+++.+|||+|++|+++..
T Consensus 199 PsDAa~AmeLGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 199 ASDAAIAMELGCEAVLMNTAIAH 221 (265)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEChHHhC
Confidence 99999999999999999999864
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=83.48 Aligned_cols=193 Identities=14% Similarity=0.168 Sum_probs=110.3
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
...|.+...+.++++.+.|++.+-++...|..-...+.++..+..+.-+....+. ...........+.. .+. -+
T Consensus 14 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~--~~~~i~~a~~~Gad-~V~---~~ 87 (212)
T 2v82_A 14 RGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVL--KPEQVDALARMGCQ-LIV---TP 87 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCC--SHHHHHHHHHTTCC-EEE---CS
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEecccc--CHHHHHHHHHcCCC-EEE---eC
Confidence 3556666777777777778888777655443222223343333322111100000 00000000000000 000 11
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
....+.++.. +..+.++++. +.+++++..+.+.|+|+|.+... .+..++.+.++++.++.++||+++|||.
T Consensus 88 ~~~~~~~~~~-~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvia~GGI~ 158 (212)
T 2v82_A 88 NIHSEVIRRA-VGYGMTVCPG-CATATEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVFAVGGVT 158 (212)
T ss_dssp SCCHHHHHHH-HHTTCEEECE-ECSHHHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEEEESSCC
T ss_pred CCCHHHHHHH-HHcCCCEEee-cCCHHHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEEEeCCCC
Confidence 2234455444 4457776654 78899999999999999988321 1223566777766552259999999997
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 341 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~ 341 (370)
.+++.+++.+||++|.+|+.++.+. +..+...+.++.+.+.++...++
T Consensus 159 -~~~i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~~~ 206 (212)
T 2v82_A 159 -PENLAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAVQL 206 (212)
T ss_dssp -TTTHHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999886421 11234555666666666665554
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=88.15 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=113.1
Q ss_pred eeecCceeecccccccccCChhh-HHHHHHHHHcCCceeecCCCCCCHHHHhccC-C-CceEEEEeecCC----h--HHH
Q 017492 68 FKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTG-P-GIRFFQLYVYKD----R--NVV 138 (370)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~e-~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~-~~~~~Qly~~~d----~--~~~ 138 (370)
..+..|+.++||.... + ..+++++.+.|+..++.+.. ..+.+.+.. . .+..+|+....+ . +..
T Consensus 30 ~~id~~~~l~p~~~~~------~~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~ 101 (273)
T 2qjg_A 30 VPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKG--IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVI 101 (273)
T ss_dssp EECCHHHHHCSCTTSS------SHHHHHHHHHHHTCSEEEECHH--HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEE
T ss_pred EEcccccccCCCcchh------hHHHHHHHHHhcCCCEEEeCHH--HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchH
Confidence 3455677788874332 3 26899999999988774320 011111111 1 245667654321 1 111
Q ss_pred HHHHHHHHHcCCcEEEE--ecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 139 AQLVRRAERAGFKAIAL--TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~i--tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
.+.++++.+.|++.+.+ +..++. ..+.+. ..+.
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~--------------------------------------~~~~~~-------~~~~ 136 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDE--------------------------------------DWEAYR-------DLGM 136 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTT--------------------------------------HHHHHH-------HHHH
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCC--------------------------------------HHHHHH-------HHHH
Confidence 45677888899999844 332210 000000 1223
Q ss_pred HHHHHHhcCCcEEEEec---------CCH---HHH-HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 217 VKWLQTITKLPILVKGV---------LTA---EDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v---------~~~---~~a-~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.++.+.+++|+++... .+. +++ +.+.++|+|+|.++. +..++.+.++.+.+ ++||
T Consensus 137 v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~--~ipv 205 (273)
T 2qjg_A 137 IAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGC--PAPV 205 (273)
T ss_dssp HHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhC--CCCE
Confidence 33334446899988741 333 344 888999999999863 13567888888776 7999
Q ss_pred EEecCCCC--HHH----HHHHHHhCCCEEEEcHHHHH
Q 017492 284 FLDGGVRR--GTD----VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 284 i~~GGI~~--~~d----v~kalalGAd~V~igr~~l~ 314 (370)
++.|||+. .+| +.+++.+||++|.+||.++.
T Consensus 206 va~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 206 VVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp EEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 99999995 777 55566899999999999874
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-07 Score=82.35 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=72.0
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-----C----CHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-----L----TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-----~----~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (370)
+...++|+.+++.++ ...+|.+ + +.++ ++.+.++|+|+|..|..-+ ..+.++.+.+..+++.+
T Consensus 112 ~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~---~~~gAt~edv~lm~~~v 187 (231)
T 3ndo_A 112 DAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFH---PSGGASVQAVEIMARTV 187 (231)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCC---TTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCC---CCCCCCHHHHHHHHHHh
Confidence 345678889998885 3345875 4 5544 4567899999999985311 02345677777777777
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+++++|-++||||+.+|+++.+.+||+-++..+
T Consensus 188 ~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~ 220 (231)
T 3ndo_A 188 GERLGVKASGGIRTAEQAAAMLDAGATRLGLSG 220 (231)
T ss_dssp TTTSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred CCCceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence 779999999999999999999999999666554
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-07 Score=82.97 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=71.6
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
+...++|+.+++.++ ...+|.+ ++.++ ++.+.++|+|+|..|..-+ .+.++.+.+..+++.+++++
T Consensus 143 ~~v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~----~~GAT~edV~lm~~~vg~~v 217 (260)
T 3r12_A 143 EYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEM 217 (260)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCc
Confidence 345667888888875 3345865 45544 4667899999999985311 23456777777777777799
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+|-++||||+.+|+++.+.+||+-++..+
T Consensus 218 ~VKaAGGIrt~~~al~mi~aGA~RiGtS~ 246 (260)
T 3r12_A 218 GVKASGGIRTFEDAVKMIMYGADRIGTSS 246 (260)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred eEEEeCCCCCHHHHHHHHHcCCceeecch
Confidence 99999999999999999999999766654
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=84.90 Aligned_cols=101 Identities=16% Similarity=0.013 Sum_probs=68.9
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCC-----------H----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHH
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~-----------~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~ 274 (370)
.|..|+++.+|+.+ +-+|.+|+..+ . ..++.+.+.|++.+.++...-..............+++
T Consensus 203 Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik 282 (358)
T 4a3u_A 203 RLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIR 282 (358)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHH
Confidence 35788999999998 35688887521 1 22566778999999997532111111111112334555
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+.. ..||+ .||+.+++++.++|+-| ||+|++||+++.
T Consensus 283 ~~~--~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~la 320 (358)
T 4a3u_A 283 KVF--KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIG 320 (358)
T ss_dssp HHC--CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHH
T ss_pred Hhc--CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHh
Confidence 654 55665 58889999999999999 999999999985
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-08 Score=94.54 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=81.2
Q ss_pred cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC-----------------------CC-------ccchHHHHHHH
Q 017492 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------DY-------VPATIMALEEV 273 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~-----------------------~~-------~~~~~~~l~~i 273 (370)
.+.++++ .+.+.+++.++.++|+|.|.+.|.+|+.. +. ..++++.+.++
T Consensus 124 ~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i 202 (297)
T 4adt_A 124 FKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLT 202 (297)
T ss_dssp CSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHH
T ss_pred CCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHH
Confidence 3678776 58899999999999999999987655421 01 13456778888
Q ss_pred HHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017492 274 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 274 ~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 343 (370)
.+.+ ++||+ +.|||++++|+.+++.+|||+|++|+.++.+ +.....++.|.+.+..++...+
T Consensus 203 ~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a------~dp~~~~~~l~~ai~~~~~~~~ 266 (297)
T 4adt_A 203 RKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES------ENPQKMASSIVMAVSNFNNPKI 266 (297)
T ss_dssp HHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS------SCHHHHHHHHHHHHHTTTCHHH
T ss_pred HHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC------CCHHHHHHHHHHHHHhhCCHHH
Confidence 8776 67776 9999999999999999999999999998852 1122344555555554444433
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=83.95 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...++++.+.+.|++.+.+|+.+|..-.-.+.++..+ |. .+...++.. ..........+....+
T Consensus 36 vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~--~~~~iGaGTVlt--~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 36 VIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ--PEMLIGAGTILN--GEQALAAKEAGATFVV 111 (232)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEECCCS--HHHHHHHHHHTCSEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCCEEeECCcCC--HHHHHHHHHcCCCEEE
Confidence 444555677888888889999999999999998886444445555555 22 112222110 0000001111222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
-|.++.+.++..++ .++|++. ++.|+.++..|.++|+|.|.++-.+ . ......|+.++..+ .++|++
T Consensus 112 ----sP~~~~~vi~~~~~-~gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~----~gG~~~lkal~~p~-p~ip~~ 178 (232)
T 4e38_A 112 ----SPGFNPNTVRACQE-IGIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--A----SGGISMVKSLVGPY-GDIRLM 178 (232)
T ss_dssp ----CSSCCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--T----TTHHHHHHHHHTTC-TTCEEE
T ss_pred ----eCCCCHHHHHHHHH-cCCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--c----ccCHHHHHHHHHHh-cCCCee
Confidence 23456777777666 4888864 6889999999999999999995421 0 11346677666655 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.|||. .+++..++++||.++++|+.+.
T Consensus 179 ptGGI~-~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 179 PTGGIT-PSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp EBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred eEcCCC-HHHHHHHHHCCCeEEEECchhc
Confidence 999995 7999999999999999998765
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.4e-07 Score=80.17 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
..+.-...++.|.+.|++.+.+.++.. ... .++.+..
T Consensus 69 ~~~~k~~e~~~Ai~~GAdevd~vinig-----------------------------------------~~~--~g~~~~v 105 (220)
T 1ub3_A 69 EKEVKALEAALACARGADEVDMVLHLG-----------------------------------------RAK--AGDLDYL 105 (220)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHH-----------------------------------------HHH--TTCHHHH
T ss_pred chHHHHHHHHHHHHcCCCEEEecccch-----------------------------------------hhh--CCCHHHH
Confidence 345455667788889999998876510 000 0122335
Q ss_pred HHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 214 WKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.+++..+++.++-+ .+|.+ ++.++ ++.+.++|+|+|..|..-+ .+.++.+.+..+++.++.++||.
T Consensus 106 ~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~----~~gat~~dv~~m~~~vg~~v~Vk 180 (220)
T 1ub3_A 106 EAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQVK 180 (220)
T ss_dssp HHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhhCCCCeEE
Confidence 67888888887544 56754 45544 5678899999999985211 23356666666666666689999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++|||++.+|+++.+.+||+-++..
T Consensus 181 aaGGirt~~~al~~i~aGa~RiG~S 205 (220)
T 1ub3_A 181 AAGGIRDRETALRMLKAGASRLGTS 205 (220)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEET
T ss_pred EECCCCCHHHHHHHHHCCCcccchh
Confidence 9999999999999999999944443
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.4e-07 Score=80.54 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-CCC-ccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-~~~-~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++.. +..+.+ .+.+.++++.+.+.|+|+|.+++..+++ ..+ .+..++.+.++.+.. ++||+++|||
T Consensus 100 ~~~~~~~~~~--~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI- 173 (221)
T 1yad_A 100 SPKQIRARFP--HLHIGR-SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM- 173 (221)
T ss_dssp CHHHHHHHCT--TCEEEE-EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-
T ss_pred CHHHHHHHCC--CCEEEE-EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-
Confidence 3444544432 344433 3468999999999999999986532222 111 134567788877765 8999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++++.+++.+||++|.+|+.++.
T Consensus 174 ~~~nv~~~~~~Ga~gv~vgs~i~~ 197 (221)
T 1yad_A 174 TPDRLRDVKQAGADGIAVMSGIFS 197 (221)
T ss_dssp CGGGHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 999999999999999999999864
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=84.93 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.++++...++|++.|.+.+ |.+ -|. .+.+..+. +....+.......
T Consensus 24 ~P~~~~t~~~~~~l~~~GaD~iElGi--PfS------------DP~---------aDGpvIq~----a~~rAL~~g~~~~ 76 (252)
T 3tha_A 24 YPNLQTSEAFLQRLDQSPIDILELGV--AYS------------DPI---------ADGEIIAD----AAKIALDQGVDIH 76 (252)
T ss_dssp SSCHHHHHHHHHTGGGSSCSEEEEEC--CCS------------CCC---------SCCCHHHH----HHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCC---------CCcHHHHH----HHHHHHHCCCCHH
Confidence 34678899999999999999998753 421 121 00011111 1112222212222
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc-----------
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR----------- 258 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~----------- 258 (370)
..++.++++|+. +|+++-+..++ +.++.+.++|+|++++-. ||=.
T Consensus 77 ~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~ 154 (252)
T 3tha_A 77 SVFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPK 154 (252)
T ss_dssp HHHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCH
T ss_pred HHHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcH
Confidence 356667777754 79988775442 347889999999998841 1100
Q ss_pred -----------------CCC--Cccc-h-----HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 259 -----------------QLD--YVPA-T-----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 259 -----------------~~~--~~~~-~-----~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
... +|.. . .+.+.++++.. ++||++.+||++++++.++.. +||+|.+|++++
T Consensus 155 eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiV 231 (252)
T 3tha_A 155 ERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIV 231 (252)
T ss_dssp HHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHH
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHH
Confidence 000 1211 1 12344444443 799999999999999977654 799999999999
Q ss_pred HHHHhcCHH
Q 017492 314 YSLAAEGEK 322 (370)
Q Consensus 314 ~~~~~~G~~ 322 (370)
..+...+.+
T Consensus 232 k~i~~~~~~ 240 (252)
T 3tha_A 232 KCFKQGNLD 240 (252)
T ss_dssp HHTTSSCHH
T ss_pred HHHHhcCHH
Confidence 876544443
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-07 Score=80.98 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---GAd~V~igr~~ 312 (370)
.+.++.+.+.|++.|.+.+....+...+ ..++.+.++++.+ ++||+++|||++.+|+.+++.+ |||+|++||++
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGG-PNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSC-CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCC-CCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 5778999999999998865211111112 3678888887765 8999999999999999999988 99999999998
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 229 ~~ 230 (244)
T 2y88_A 229 YA 230 (244)
T ss_dssp HT
T ss_pred HC
Confidence 75
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-06 Score=76.79 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=66.7
Q ss_pred HHHHHHhcCCcEEEEe--cCCH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG--VLTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~--v~~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+++ .++++++-. ..++ +.++.+.+.|+|+|.+.. |......++...+.+.++++.+ .++||+++|||+ ++
T Consensus 96 ~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~-g~~g~~~~~~~~~~i~~l~~~~-~~~~i~~~gGI~-~~ 171 (211)
T 3f4w_A 96 IRAAKE-AGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT-GTDQQAAGRKPIDDLITMLKVR-RKARIAVAGGIS-SQ 171 (211)
T ss_dssp HHHHHH-HTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC-CHHHHHTTCCSHHHHHHHHHHC-SSCEEEEESSCC-TT
T ss_pred HHHHHH-cCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC-CCcccccCCCCHHHHHHHHHHc-CCCcEEEECCCC-HH
Confidence 444444 366666532 2344 668999999999998753 2110111223567788887765 379999999996 89
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++.+|||+|.+||+++.
T Consensus 172 ~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 172 TVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp THHHHHTTCCSEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEECHHHcC
Confidence 999999999999999998874
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=93.12 Aligned_cols=102 Identities=18% Similarity=0.024 Sum_probs=72.0
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecC-----------C----H----HHHHHH---HHcC--ccEEEEccCCc-cCCCCcc
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVL-----------T----A----EDARIA---VQAG--AAGIIVSNHGA-RQLDYVP 264 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~-----------~----~----~~a~~a---~~aG--~d~I~vs~~gg-~~~~~~~ 264 (370)
.|..++++.+|+.++ .||.+|+.. + . +.++.+ .+.| +|+|.|+.... .+.+..+
T Consensus 219 r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~ 298 (407)
T 3tjl_A 219 RLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSE 298 (407)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCG
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCc
Confidence 467889999999985 589999863 2 1 225667 7789 99999973211 1111111
Q ss_pred c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---C-CCEEEEcHHHHH
Q 017492 265 A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---G-ASGIFIGRPVVY 314 (370)
Q Consensus 265 ~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---G-Ad~V~igr~~l~ 314 (370)
. .+..+..+++.. ++|||+.|||.+..|+.+++.. | ||+|++||+++.
T Consensus 299 ~~~~~~~~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 299 EDQAGDNEFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp GGCCCCSHHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred cchhHHHHHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 1 112345566666 6899999999999888887776 5 999999999985
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=80.89 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.+++..+.+.|+|.|-+.|..-+ .-...++.+.++.+.++. ++|+++.|||++++|+.+... ||++|.+|+
T Consensus 162 ~~~~E~~~a~~~gad~IGvn~~~l~---~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGs 237 (254)
T 1vc4_A 162 HTERELEIALEAGAEVLGINNRDLA---TLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGT 237 (254)
T ss_dssp CSHHHHHHHHHHTCSEEEEESBCTT---TCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECH
T ss_pred CCHHHHHHHHHcCCCEEEEccccCc---CCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeH
Confidence 3444444555555555544433221 112233444555555433 689999999999999999999 999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
+++.
T Consensus 238 Al~~ 241 (254)
T 1vc4_A 238 SLMR 241 (254)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9985
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.3e-06 Score=75.66 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=104.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++++++|++.+-+.+-- ..| +| +-.
T Consensus 13 ~~D~~~l~~~i~~l~~~g~d~~h~DVmD-----------g~F-vp--------------------------------n~~ 48 (228)
T 3ovp_A 13 NSDLANLGAECLRMLDSGADYLHLDVMD-----------GHF-VP--------------------------------NIT 48 (228)
T ss_dssp TSCGGGHHHHHHHHHHTTCSCEEEEEEB-----------SSS-SS--------------------------------CBC
T ss_pred eCCchhHHHHHHHHHHcCCCEEEEEecC-----------CCc-Cc--------------------------------ccc
Confidence 4567777888999999999876543210 001 01 112
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec-CCHH-HHHHHHHcCccEEEEccCCcc------------------------C----
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNHGAR------------------------Q---- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v-~~~~-~a~~a~~aG~d~I~vs~~gg~------------------------~---- 259 (370)
+..+.++++|+.+ ++|+-+++. .+++ ..+.+.++|+|.|.+...... .
T Consensus 49 ~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l 128 (228)
T 3ovp_A 49 FGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYL 128 (228)
T ss_dssp BCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGT
T ss_pred cCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHH
Confidence 4567888888884 788887764 4444 366778899999988521110 0
Q ss_pred ------CC---------------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 260 ------LD---------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 260 ------~~---------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
.| ..+..++-+.++++.. .+++|.++|||+ .+.+.++..+|||.+.+||+++.+
T Consensus 129 ~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a--- 203 (228)
T 3ovp_A 129 APWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS--- 203 (228)
T ss_dssp GGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC---
T ss_pred HHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC---
Confidence 00 1233555667666653 368999999995 799999999999999999987632
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHc
Q 017492 319 EGEKGVRRVLEMLREEFELAMALS 342 (370)
Q Consensus 319 ~G~~~v~~~l~~l~~el~~~m~~~ 342 (370)
+.....++.+++.++......
T Consensus 204 ---~dp~~~~~~l~~~~~~~~~~~ 224 (228)
T 3ovp_A 204 ---EDPRSVINLLRNVCSEAAQKR 224 (228)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHHHHHHHhhc
Confidence 112345677777777766554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=79.68 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEcH
Q 017492 236 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGR 310 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---GAd~V~igr 310 (370)
.+.++.+.+.|++.|.+.+. +++ .....++.+.++++.+ ++||+++|||++++|+.+++++ |||+|++||
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~---~~g~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGT---LQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHHhCCCCEEEEeccCcccc---cCCCCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 45579999999999988642 221 1124678888888776 7999999999999999999998 999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
+++.
T Consensus 224 al~~ 227 (244)
T 1vzw_A 224 ALYA 227 (244)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9875
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-06 Score=79.37 Aligned_cols=117 Identities=22% Similarity=0.307 Sum_probs=78.1
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-------HHHHHHHHHcCccEEEEccC---------------Cc---------cC--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~~---------------gg---------~~-- 259 (370)
.++.++++|+..++|+++-+..+ ...++.+.++|+|++++-.- |- +.
T Consensus 79 ~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~e 158 (271)
T 1ujp_A 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDA 158 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHH
Confidence 46789999998899998843222 34578899999999887421 10 00
Q ss_pred -----------C--------CCc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 -----------L--------DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 -----------~--------~~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
. .+| ....+.+.++++.. ++||++.|||++++++.++ .|||+|.+|+++..
T Consensus 159 ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~ 234 (271)
T 1ujp_A 159 RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhc
Confidence 0 001 11134566666554 7999999999999999985 99999999999987
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
.... + + .+..+.++|+..+
T Consensus 235 ~~~~-~-~----~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 235 ALEE-G-R----SLAPLLQEIRQGL 253 (271)
T ss_dssp HHHT-T-C----CHHHHHHHHHHHH
T ss_pred ccch-H-H----HHHHHHHHHHHHH
Confidence 6421 1 2 3344555555444
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-05 Score=75.12 Aligned_cols=210 Identities=16% Similarity=0.193 Sum_probs=123.1
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCC---------CC------------CH---HHHhccCC-CceE
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS------------SV---EEVASTGP-GIRF 126 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~---------~~------------~~---eei~~~~~-~~~~ 126 (370)
.||+-+..| .+ -.|+.+.+-|+.+.+.-.+ +. .+ +|+....+ -|.+
T Consensus 28 ~~iig~gaG-tG--------lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~ 98 (286)
T 2p10_A 28 EPIIGGGAG-TG--------LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVL 98 (286)
T ss_dssp CCEEEEEES-SH--------HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEE
T ss_pred CceEEEecc-cc--------hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEE
Confidence 476655543 33 4899999999998874211 10 01 24555443 5799
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
+|+....+...+...++.++++||..+ +| .|..|--....|+. +.
T Consensus 99 Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N--~ptvglidG~fr~~-------------------------------LE- 143 (286)
T 2p10_A 99 AGVNGTDPFMVMSTFLRELKEIGFAGV-QN--FPTVGLIDGLFRQN-------------------------------LE- 143 (286)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTCCEE-EE--CSCGGGCCHHHHHH-------------------------------HH-
T ss_pred EEECCcCCCcCHHHHHHHHHHhCCceE-EE--CCCcccccchhhhh-------------------------------Hh-
Confidence 997644444466777788999999998 55 45432111111110 00
Q ss_pred cCCCCccHH----HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC---Ccc-CCCCccc--h-HHHHHHHHH
Q 017492 207 QIDRSLSWK----DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GAR-QLDYVPA--T-IMALEEVVK 275 (370)
Q Consensus 207 ~~d~~~~~~----~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~---gg~-~~~~~~~--~-~~~l~~i~~ 275 (370)
+....++ .|+..++. ++ +.+--+.++++++.+.++|+|.|.+.-. ||. ......+ . .+.+.++.+
T Consensus 144 --E~gm~~~~eve~I~~A~~~-gL-~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~ 219 (286)
T 2p10_A 144 --ETGMSYAQEVEMIAEAHKL-DL-LTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIE 219 (286)
T ss_dssp --HTTCCHHHHHHHHHHHHHT-TC-EECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHC-CC-eEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHH
Confidence 1112333 34443332 22 2223357999999999999999998321 121 0011111 1 233444443
Q ss_pred H---ccCCCcEEEec-CCCCHHHHHHHHHh--CCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 276 A---TQGRIPVFLDG-GVRRGTDVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 276 ~---~~~~ipvi~~G-GI~~~~dv~kalal--GAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
+ +..++-|++-| ||.+++|+.+++.+ |++++..++.+... + ++..+..+.++++
T Consensus 220 a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~------p-~e~ai~~~~~~fk 279 (286)
T 2p10_A 220 AARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERL------P-AEEAIRSQTLAFK 279 (286)
T ss_dssp HHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence 3 44577777776 99999999999999 99999999998764 2 4445555555543
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.5e-07 Score=84.28 Aligned_cols=45 Identities=38% Similarity=0.626 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 268 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipv--i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.+.++.+.. ++|| ++.|||.+++|+.+++.+|||+|++||+++.
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~ 276 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK 276 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence 5566666654 7898 6999999999999999999999999999874
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-07 Score=82.17 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCC-CcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~-ipvi~~GGI~ 290 (370)
+++..+.+.+. ++.|+-....+++.++++.++|++.|.--+. -|+ ..|..+.+.+..+++.. .+ +|||++|||.
T Consensus 113 tv~aa~~L~k~-Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~-~~~vPVI~~GGI~ 188 (268)
T 2htm_A 113 TLKAAERLIEE-DFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREK-ASLPPVVVDAGLG 188 (268)
T ss_dssp HHHHHHHHHHT-TCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTT-TTSSCBEEESCCC
T ss_pred HHHHHHHHHHC-CCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhc-CCCCeEEEeCCCC
Confidence 33444444432 4333323357889999999999999965222 122 12445567788887722 26 9999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++|+.+++.+|||+|++|+++..
T Consensus 189 tpsDAa~AmeLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 189 LPSHAAEVMELGLDAVLVNTAIAE 212 (268)
T ss_dssp SHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEChHHhC
Confidence 999999999999999999998864
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=78.02 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.+.++..+. .+.|++.. +.+++++..+.+.|+|+|.++. .. . . ...+.|..++..+ .++|+++.|||.
T Consensus 92 ~d~~v~~~~~~-~g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a~-~-~--gG~~~lk~l~~~~-~~ipvvaiGGI~- 161 (207)
T 2yw3_A 92 LLEEVAALAQA-RGVPYLPG-VLTPTEVERALALGLSALKFFP--AE-P-F--QGVRVLRAYAEVF-PEVRFLPTGGIK- 161 (207)
T ss_dssp CCHHHHHHHHH-HTCCEEEE-ECSHHHHHHHHHTTCCEEEETT--TT-T-T--THHHHHHHHHHHC-TTCEEEEBSSCC-
T ss_pred CCHHHHHHHHH-hCCCEEec-CCCHHHHHHHHHCCCCEEEEec--Cc-c-c--cCHHHHHHHHhhC-CCCcEEEeCCCC-
Confidence 35555555555 78888764 8899999999999999999943 11 0 1 1245567776655 379999999997
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+++..++++||++|.+|+.++.
T Consensus 162 ~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 162 EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp GGGHHHHHTCSSBSCEEESGGGS
T ss_pred HHHHHHHHhCCCcEEEEehhhhC
Confidence 69999999999999999998753
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.4e-06 Score=74.48 Aligned_cols=164 Identities=17% Similarity=0.206 Sum_probs=99.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc-cccccccccccCccccccchhhHHHhhhcCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
..+.+...+.++.+.+.|++.+.++...+..-...+.++..+ |.. +...++. ...........++...+ -+
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~--~~l~vgaGtvl--~~d~~~~A~~aGAd~v~----~p 96 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PDFLIAAGTVL--TAEQVVLAKSSGADFVV----TP 96 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEESCC--SHHHHHHHHHHTCSEEE----CS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhC--cCcEEeeCcEe--eHHHHHHHHHCCCCEEE----EC
Confidence 455566666777777778888888776554322333344444 211 1111100 00000000000111111 12
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.+.++..++ .+.|++. ++.+++++..+.+.|+|+|.++. .. .....+.|.+++..++ ++|+++.|||.
T Consensus 97 ~~d~~v~~~ar~-~g~~~i~-Gv~t~~e~~~A~~~Gad~vk~Fp--a~----~~gG~~~lk~l~~~~~-~ipvvaiGGI~ 167 (224)
T 1vhc_A 97 GLNPKIVKLCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFP--AE----ASGGVKMIKALLGPYA-QLQIMPTGGIG 167 (224)
T ss_dssp SCCHHHHHHHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTTT-TCEEEEBSSCC
T ss_pred CCCHHHHHHHHH-hCCCEEe-ccCCHHHHHHHHHCCCCEEEEee--Cc----cccCHHHHHHHHhhCC-CCeEEEECCcC
Confidence 345666777777 7888876 58999999999999999999943 10 0112566777766553 79999999994
Q ss_pred CHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 291 RGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+++...+++ |+++|. |+.+..
T Consensus 168 -~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 168 -LHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp -TTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred -HHHHHHHHhcCCCEEEE-EchhcC
Confidence 4889999998 899999 887764
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=78.11 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.+.|+|.|.+.+....+... .+.++.+.++++.. ++||+++|||++.+|+.+++.+|||+|++||+++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~-~~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGL-GYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCS-CCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcC-cCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 466889999999999985421111111 23567788888776 89999999999999999999999999999999875
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=78.84 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.+.+..+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++.+|||+|++|++++.
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~ 230 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEG-YDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence 5778999999999998853221111122 3588899988877 89999999999999999999999999999999975
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.2e-06 Score=76.36 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=68.6
Q ss_pred HHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--CCccCCC-CccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+..+++..+. ++++. +.+++++..+.+.|+|+|.++. ..+.... ..+..++.+.++++... ++||++.|||. +
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 4555555554 44443 3678889999999999999853 1111111 23445677888877652 39999999999 8
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~ 314 (370)
+++.+++.+||++|.+|+.++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhc
Confidence 9999999999999999999864
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-05 Score=73.15 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=64.6
Q ss_pred cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCC
Q 017492 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGA 303 (370)
+++-+++ .+-+.++.+++.++|++.|-|-|. .+.+-...+....++...++.++.+++.+||++.+|+.+....|+
T Consensus 152 lGl~~Lv-EVh~~~El~rAl~~~a~iIGINNR---nL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~ 227 (258)
T 4a29_A 152 YGMEPLI-LINDENDLDIALRIGARFIGIMSR---DFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGV 227 (258)
T ss_dssp TTCCCEE-EESSHHHHHHHHHTTCSEEEECSB---CTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTC
T ss_pred HhHHHHH-hcchHHHHHHHhcCCCcEEEEeCC---CccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCC
Confidence 3555543 456677777777777777766553 233333345555566666666888999999999999999999999
Q ss_pred CEEEEcHHHHHH
Q 017492 304 SGIFIGRPVVYS 315 (370)
Q Consensus 304 d~V~igr~~l~~ 315 (370)
|+|.||..||..
T Consensus 228 ~a~LVGealmr~ 239 (258)
T 4a29_A 228 NAFLISSSLMRN 239 (258)
T ss_dssp CEEEECHHHHHC
T ss_pred CEEEECHHHhCC
Confidence 999999999973
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=78.87 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=62.4
Q ss_pred CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-----C-CCEEE
Q 017492 235 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIF 307 (370)
Q Consensus 235 ~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-----G-Ad~V~ 307 (370)
+. +.++.+.++|++.|.+.+....+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++.+ | ||+|+
T Consensus 145 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccccCCc-CCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 44 447889999999999865321111122 3688899998887 8999999999999999999998 9 99999
Q ss_pred EcHHHHHH
Q 017492 308 IGRPVVYS 315 (370)
Q Consensus 308 igr~~l~~ 315 (370)
+|++++.+
T Consensus 222 vgsal~~~ 229 (241)
T 1qo2_A 222 VGRAFLEG 229 (241)
T ss_dssp ECHHHHTT
T ss_pred eeHHHHcC
Confidence 99999863
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=81.40 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.+.++.+.+.|++.|.+.+....+...+ +.++.+.++++.+ ++||++.|||++++|+.+++.+|||+|++|++++.+
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 3557889999999999854221111122 3577888887765 899999999999999999999999999999998753
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=4e-06 Score=77.18 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccCC--CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+.+.++++.+.+.|+|+|.+++-..+.. +..+..++.+.++++....++||++.||| +.+++.+++.+||++|.+|+
T Consensus 142 ~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~s 220 (243)
T 3o63_A 142 THDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVR 220 (243)
T ss_dssp ECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESH
T ss_pred CCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeH
Confidence 5789999999999999999976332221 11234567777776542237999999999 88999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
+++.
T Consensus 221 ai~~ 224 (243)
T 3o63_A 221 AITS 224 (243)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9874
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=78.14 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.+....+...+ +.++.+.++++.+ ++||+++|||++.+|+.+++.+|||+|++|++++.
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTSCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 4668999999999998853211111122 3578888887765 89999999999999999999999999999999875
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.2e-06 Score=74.44 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=62.2
Q ss_pred HHHHHHhcCCcEEE--EecCCHHHHHHHHHcCccEEEEccCCcc-CCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~v--K~v~~~~~a~~a~~aG~d~I~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+++ .+++..+ =++.|+++++.+.+.|+|++.+.. +.. +.++.......+..+++..+.++|++++|||+ .+
T Consensus 102 ~~~~~~-~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~-~~~~~~~g~~~~~~~l~~i~~~~~~~~pi~v~GGI~-~~ 178 (218)
T 3jr2_A 102 KKVADE-LNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHR-SRDAELAGIGWTTDDLDKMRQLSALGIELSITGGIV-PE 178 (218)
T ss_dssp HHHHHH-HTCEEEEECCSSCCHHHHHHHHHTTCCEEEEEC-CHHHHHHTCCSCHHHHHHHHHHHHTTCEEEEESSCC-GG
T ss_pred HHHHHH-hCCccceeeeecCCHHHHHHHHHcCccceeeee-ccccccCCCcCCHHHHHHHHHHhCCCCCEEEECCCC-HH
Confidence 444444 3555543 234678889999999999987632 100 00111112234444444333479999999994 89
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++.+|||.+.+||++..
T Consensus 179 ~~~~~~~aGAd~vvvGsaI~~ 199 (218)
T 3jr2_A 179 DIYLFEGIKTKTFIAGRALAG 199 (218)
T ss_dssp GGGGGTTSCEEEEEESGGGSH
T ss_pred HHHHHHHcCCCEEEEchhhcC
Confidence 999999999999999999765
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=73.74 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhc---CCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCC-ccchHHHHHH--HHHHc
Q 017492 213 SWKDVKWLQTIT---KLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEE--VVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~---~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~-~~~~~~~l~~--i~~~~ 277 (370)
..+++..+++.+ +.|+ |.+ ++.++ ++.+.++|+|+|..|...+ . +.++.+.+.. +++.+
T Consensus 118 v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~----~~~gAt~~dv~l~~m~~~v 191 (234)
T 1n7k_A 118 VYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY----TKGGDPVTVFRLASLAKPL 191 (234)
T ss_dssp HHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS----CCCCSHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCCHHHHHHHHHHHHH
Confidence 455666666654 4554 654 45544 5678899999999985211 1 2345555555 66666
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+ +||.++|||++.+|+++.+.+||+-++..
T Consensus 192 ~--v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 192 G--MGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp T--CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred C--CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 4 99999999999999999999999954443
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-05 Score=80.71 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=87.0
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ 296 (370)
++..++ .++.++ =.+.+.++++++.++|+|.|-+-|.+-+ .-...++...++.+.++.++++++.|||++++|+.
T Consensus 150 ~~~a~~-lgm~~L-vEvh~~eE~~~A~~lga~iIGinnr~L~---t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~ 224 (452)
T 1pii_A 150 AAVAHS-LEMGVL-TEVSNEEEQERAIALGAKVVGINNRDLR---DLSIDLNRTRELAPKLGHNVTVISESGINTYAQVR 224 (452)
T ss_dssp HHHHHH-TTCEEE-EEECSHHHHHHHHHTTCSEEEEESEETT---TTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHH
T ss_pred HHHHHH-cCCeEE-EEeCCHHHHHHHHHCCCCEEEEeCCCCC---CCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 333333 466654 4578999999999999999988776433 22344566666666666678999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 297 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 297 kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
++..+ |++|.+|++++.. +-....++.|.. .....||.++.+|..
T Consensus 225 ~~~~~-a~avLVGealmr~------~d~~~~~~~l~~---~~~KICGit~~eda~ 269 (452)
T 1pii_A 225 ELSHF-ANGFLIGSALMAH------DDLHAAVRRVLL---GENKVCGLTRGQDAK 269 (452)
T ss_dssp HHTTT-CSEEEECHHHHTC------SCHHHHHHHHHH---CSCEECCCCSHHHHH
T ss_pred HHHHh-CCEEEEcHHHcCC------cCHHHHHHHHHH---HhccccCCCcHHHHH
Confidence 99999 9999999999863 112223333332 245688999988776
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-05 Score=72.06 Aligned_cols=84 Identities=31% Similarity=0.497 Sum_probs=63.7
Q ss_pred HHhcCCcEEEEecC---------CHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 221 QTITKLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 221 r~~~~~Pv~vK~v~---------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
...+++|+++=... +.+. ++.+.++|+|+|.++.. .+.+.+.++++.+ +.+||+++|
T Consensus 134 ~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~~---------~~~e~~~~~~~~~-~~~pV~asG 203 (263)
T 1w8s_A 134 AVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAVKVA-GKVPVLMSG 203 (263)
T ss_dssp HHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEECC---------SSHHHHHHHHHHT-TTSCEEEEC
T ss_pred HHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcCC---------CCHHHHHHHHHhC-CCCeEEEEe
Confidence 33457888765333 4443 46788999999999731 2457788888776 345999999
Q ss_pred CCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q 017492 288 GVR--RGTDVFKAL----ALGASGIFIGRPVVY 314 (370)
Q Consensus 288 GI~--~~~dv~kal----alGAd~V~igr~~l~ 314 (370)
||+ +.+|+++.+ ..||+++.+||.++.
T Consensus 204 Gi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~ 236 (263)
T 1w8s_A 204 GPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 236 (263)
T ss_dssp CSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcC
Confidence 999 888888777 899999999999875
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-05 Score=70.11 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHcCccEEEEcc-C-CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 242 AVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 242 a~~aG~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
....++|.|.+.. + |+......+..++.+.++++... .++||+++|||+ .+++.+++.+|||+|.+||+++.
T Consensus 127 ~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~ 203 (220)
T 2fli_A 127 PLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 203 (220)
T ss_dssp GGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred HHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 3345677775522 2 21111223334455555555432 268999999999 79999988999999999999874
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=72.23 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=100.5
Q ss_pred EEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc-cccccccccccCccccccchhhHHHhhh
Q 017492 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 128 Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
-+....+.+...+.++.+.+.|++.+.++...+..-...+.++..+ |.. +...++. ...........+....+.
T Consensus 20 ~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~--~~~~vgagtvi--~~d~~~~A~~aGAd~v~~- 94 (214)
T 1wbh_A 20 PVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PEAIVGAGTVL--NPQQLAEVTEAGAQFAIS- 94 (214)
T ss_dssp EEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TTSEEEEESCC--SHHHHHHHHHHTCSCEEE-
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC--cCCEEeeCEEE--EHHHHHHHHHcCCCEEEc-
Confidence 3344456666677788888888888888877654333334454444 211 1111110 000000000001111111
Q ss_pred cCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 207 ~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+..+.+ +.+.++..+.|++. ++.+++++..+.++|+|+|.++. .. .....+.|..++..++ ++|+++.
T Consensus 95 ---p~~d~~-v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~----~~gG~~~lk~i~~~~~-~ipvvai 162 (214)
T 1wbh_A 95 ---PGLTEP-LLKAATEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE----ANGGVKALQAIAGPFS-QVRFCPT 162 (214)
T ss_dssp ---SSCCHH-HHHHHHHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTCT-TCEEEEB
T ss_pred ---CCCCHH-HHHHHHHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc----cccCHHHHHHHhhhCC-CCeEEEE
Confidence 123344 44444457888876 58999999999999999999943 11 0112566777766553 7999999
Q ss_pred cCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
|||. .+++...+++ |+++|. |+.+..
T Consensus 163 GGI~-~~n~~~~l~agg~~~v~-gS~i~~ 189 (214)
T 1wbh_A 163 GGIS-PANYRDYLALKSVLCIG-GSWLVP 189 (214)
T ss_dssp SSCC-TTTHHHHHTSTTBSCEE-EGGGSC
T ss_pred CCCC-HHHHHHHHhcCCCeEEE-eccccC
Confidence 9995 5899999998 899999 887754
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-05 Score=70.14 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=93.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++++++|++.+-+.+-- ..| +| +-.
T Consensus 36 saD~~~L~~~i~~l~~~G~d~lHvDVmD-----------g~F-Vp--------------------------------nit 71 (246)
T 3inp_A 36 SADLARLGDDVKAVLAAGADNIHFDVMD-----------NHY-VP--------------------------------NLT 71 (246)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEEB-----------SSS-SS--------------------------------CBC
T ss_pred cCChhhHHHHHHHHHHcCCCEEEEEecC-----------CCc-Cc--------------------------------chh
Confidence 4577777889999999999866443210 001 01 113
Q ss_pred ccHHHHHHHHHhc-CCcEEEEec-CCHH-HHHHHHHcCccEEEEccC---------------Cc---------cC-----
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v-~~~~-~a~~a~~aG~d~I~vs~~---------------gg---------~~----- 259 (370)
+-.+.++++|+.+ ++|+-+.+. .+++ -.+.+.++|+|.|.+... |. +.
T Consensus 72 ~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~ 151 (246)
T 3inp_A 72 FGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLK 151 (246)
T ss_dssp CCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGT
T ss_pred cCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 4567899999998 899998874 4454 467788999999999521 11 00
Q ss_pred -----CC---------------CccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD---------------YVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~---------------~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +.+.+++-+.++++.. +.+++|.++|||+ .+.+.++..+|||.+.+||+++
T Consensus 152 ~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf 227 (246)
T 3inp_A 152 YVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIF 227 (246)
T ss_dssp TTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHH
T ss_pred HHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHh
Confidence 00 1134555666666543 2368999999998 5889899999999999999875
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=70.94 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+.+++++..+.+.|+|+|.+++. ++......+..++.+.++++.. ++||++.|||. ++++.+++.+||++|.+|+
T Consensus 115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhH
Confidence 46788888899999999998651 1111112345677888887766 79999999999 8999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
.++.
T Consensus 192 ~i~~ 195 (215)
T 1xi3_A 192 AVMG 195 (215)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9864
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-05 Score=75.53 Aligned_cols=102 Identities=13% Similarity=-0.038 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCC--------------HH----HHHHHHHcC-----ccEEEEccCCccC--CCCcc
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLT--------------AE----DARIAVQAG-----AAGIIVSNHGARQ--LDYVP 264 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~--------------~~----~a~~a~~aG-----~d~I~vs~~gg~~--~~~~~ 264 (370)
.|..|+++.||+.+ +-||.+|+... .+ .+..+...+ .+.+.++...... ...+.
T Consensus 223 Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (400)
T 4gbu_A 223 RFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGE 302 (400)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTT
T ss_pred HHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCccccccc
Confidence 36788999999998 35999998521 11 122233222 3344443211100 00000
Q ss_pred c--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 265 A--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 265 ~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
. .......+++.+ ++|||+.|||.+..++.+.+..| ||+|.+||+||.
T Consensus 303 ~~~~~~~~~~ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia 353 (400)
T 4gbu_A 303 GEYEGGSNDFVYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 353 (400)
T ss_dssp TCCCSCCSTHHHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred chhhhHHHHHHHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 0 001112244555 79999999999988888888765 999999999985
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.7e-06 Score=85.62 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala-lGAd~V~igr~~l~ 314 (370)
.+.++.+.++|++.|.+.+...-+...| +.++.+.++.+++ ++|||++|||++.+|+.+++. +||++|++||+|+.
T Consensus 455 ~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 455 WELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 5779999999999998843211112233 4789999999887 899999999999999999998 89999999999875
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=72.69 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=91.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
..|...+.+.++++++.|++.+-+.+ |.+. +| +-
T Consensus 13 a~D~~~l~~~i~~~~~~Gad~ihldi~DG~f-------------vp--------------------------------~~ 47 (230)
T 1tqj_A 13 SADFSRLGEEIKAVDEAGADWIHVDVMDGRF-------------VP--------------------------------NI 47 (230)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSS-------------SS--------------------------------CB
T ss_pred ecCHhHHHHHHHHHHHcCCCEEEEEEEecCC-------------Cc--------------------------------ch
Confidence 45677778889999999999865432 1110 01 11
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-CCH-HHHHHHHHcCccEEEEccC--CccC---------------------------
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNH--GARQ--------------------------- 259 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-~~~-~~a~~a~~aG~d~I~vs~~--gg~~--------------------------- 259 (370)
++..+.++++|+.++.|+.+-.. .++ +..+.+.++|+|+|.+... -...
T Consensus 48 ~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~ 127 (230)
T 1tqj_A 48 TIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF 127 (230)
T ss_dssp CBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGG
T ss_pred hhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHH
Confidence 23457888888888778774443 343 2367788889999987432 1000
Q ss_pred -------CC---------------CccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 -------LD---------------YVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 -------~~---------------~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.| ..+..++.+.++++... .++||.++|||.. +++.++..+|||.+.+||+++.
T Consensus 128 ~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 128 LEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp GTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 00 11234566677766542 2699999999998 8898999999999999999764
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.4e-05 Score=68.71 Aligned_cols=99 Identities=21% Similarity=0.143 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCcc------CCCCccchHHHHHHHHH
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVK 275 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~ 275 (370)
+...++|+.+++.++-. .+|.+ ++.++ ++.+.++|+|+|..|..-+. ..+.+.++.+.+..+++
T Consensus 98 ~~v~~ei~~v~~a~~~~-~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~ 176 (226)
T 1vcv_A 98 AEVRRDLISVVGAAGGR-VVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIAR 176 (226)
T ss_dssp HHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHH
Confidence 34566788888887432 56743 45544 46678999999999853210 01123345554444444
Q ss_pred H---ccCCCcEEEecCCCCHHHHHHHHHh---CCC----EEEEcH
Q 017492 276 A---TQGRIPVFLDGGVRRGTDVFKALAL---GAS----GIFIGR 310 (370)
Q Consensus 276 ~---~~~~ipvi~~GGI~~~~dv~kalal---GAd----~V~igr 310 (370)
. ++++++|-++||||+.+|+++.+.+ ||+ -++..+
T Consensus 177 ~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~ 221 (226)
T 1vcv_A 177 YIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence 4 6678999999999999999999999 999 766554
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=74.36 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHhcCCcEEEEecC------CHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc----
Q 017492 212 LSWKDVKWLQTITKLPILVKGVL------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---- 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~------~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---- 277 (370)
...++|+.+++.++ +..+|.++ +.+ -++.+.++|+|+|..|..-+ .+.++.+.+..+++.+
T Consensus 142 ~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~----~~gAT~edv~lm~~~v~~~~ 216 (281)
T 2a4a_A 142 EATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV----QINATPSSVEYIIKAIKEYI 216 (281)
T ss_dssp HHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS----SCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHHHhh
Confidence 35667888888874 34568763 233 24667899999999985311 1234444443333333
Q ss_pred ------cCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 278 ------QGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 278 ------~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
+.+++|-++||||+.+|+++.+.+||+
T Consensus 217 ~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 217 KNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp HHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred cccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 568999999999999999999999886
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.8e-06 Score=75.46 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++.+.++|+|.|.+....+. .......++.+.++++.+ ++||++.|||++.+|+.++++.|||+|++|++++
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l 112 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAV 112 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTT-TCSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHH
T ss_pred HHHHHHHHHcCCCEEEEEecCcc-cCCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHh
Confidence 46788899999999998643111 011234577888888776 8999999999999999999999999999999876
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=74.30 Aligned_cols=108 Identities=23% Similarity=0.314 Sum_probs=80.3
Q ss_pred CceEEEEeec-------CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccc
Q 017492 123 GIRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (370)
Q Consensus 123 ~~~~~Qly~~-------~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (370)
+..|++|+.- .|...+.+..++.++.|++.+.++.|.|+.++|..++...+-+|.+-
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~---------------- 165 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG---------------- 165 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSS----------------
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCc----------------
Confidence 4579999876 66777777777777789999988889999888887764332222100
Q ss_pred cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
-+.. +..-.+++.|+++++..++||++. ++.+++++..+++.|+|+|.|..
T Consensus 166 -------pIGs-G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 166 -------LIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp -------STTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred -------cCCC-CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0000 111236889999999889999998 57899999999999999999853
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=73.46 Aligned_cols=91 Identities=23% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCccHHHHHHHHHhcC-CcEEEEecC------CHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH--
Q 017492 210 RSLSWKDVKWLQTITK-LPILVKGVL------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-- 276 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~-~Pv~vK~v~------~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~-- 276 (370)
.+...++|+.+++.++ .+..+|.++ +.+ -++.+.++|+|+|..|..-+ .+.++.+.+..+++.
T Consensus 116 ~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~----~~gAt~e~v~lm~~~I~ 191 (260)
T 1p1x_A 116 EQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKV----AVNATPESARIMMEVIR 191 (260)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS----SCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHH
Confidence 3445677888888763 244568762 233 24668899999999985311 123455544444444
Q ss_pred ---ccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 277 ---TQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 277 ---~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++.+++|-++||||+.+|+++.+.+||+
T Consensus 192 ~~~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 192 DMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp HHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 4568999999999999999999999876
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00014 Score=65.87 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCcEEEEec-CC-HHHHHHHHHc--CccEEEEcc-C-CccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 214 WKDVKWLQTITKLPILVKGV-LT-AEDARIAVQA--GAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~-~~~a~~a~~a--G~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
.+.++.+++. ++++++-.- .+ .+..+...+. ++|+|.+.. + |+......+..++.+.++++.. .++||+++|
T Consensus 103 ~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~-~~~pi~v~G 180 (228)
T 1h1y_A 103 QELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVDG 180 (228)
T ss_dssp HHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEES
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc-CCCCEEEEC
Confidence 3456666654 566665432 22 3344555555 999998853 2 2222223445566777777765 378999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||.. +++.+++..|||.+.+||+++.
T Consensus 181 GI~~-~ni~~~~~aGaD~vvvGsai~~ 206 (228)
T 1h1y_A 181 GLGP-STIDVAASAGANCIVAGSSIFG 206 (228)
T ss_dssp SCST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred CcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 9987 8898899999999999999864
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-05 Score=71.79 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=67.7
Q ss_pred cCCcEEEEecCCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC
Q 017492 224 TKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG 302 (370)
.++.++ =.+.+.++++++.++ |+|.|-+-|.+-+ +-...++...++.+.++.++++++.|||++++|+.++..+
T Consensus 149 lGl~~l-vEv~~~eE~~~A~~l~g~~iIGinnr~l~---t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~- 223 (251)
T 1i4n_A 149 LGMDSL-VEVHSREDLEKVFSVIRPKIIGINTRDLD---TFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK- 223 (251)
T ss_dssp TTCEEE-EEECSHHHHHHHHTTCCCSEEEEECBCTT---TCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-
T ss_pred cCCeEE-EEeCCHHHHHHHHhcCCCCEEEEeCcccc---cCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-
Confidence 466554 346899999999999 9999988775432 2223344555555666557899999999999999999999
Q ss_pred CCEEEEcHHHHHH
Q 017492 303 ASGIFIGRPVVYS 315 (370)
Q Consensus 303 Ad~V~igr~~l~~ 315 (370)
|++|.+|++++.+
T Consensus 224 a~avLVG~aimr~ 236 (251)
T 1i4n_A 224 VNAVLVGTSIMKA 236 (251)
T ss_dssp CSEEEECHHHHHC
T ss_pred CCEEEEcHHHcCC
Confidence 9999999999863
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=72.95 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
+.+.++..+.|++. ++.+++++..+.++|+|+|.++- . ... ..+.|..++..+ .++|+++.|||. .+++
T Consensus 111 v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~FP--a-----~~~~G~~~lk~i~~~~-~~ipvvaiGGI~-~~N~ 180 (225)
T 1mxs_A 111 ILEAGVDSEIPLLP-GISTPSEIMMGYALGYRRFKLFP--A-----EISGGVAAIKAFGGPF-GDIRFCPTGGVN-PANV 180 (225)
T ss_dssp HHHHHHHCSSCEEC-EECSHHHHHHHHTTTCCEEEETT--H-----HHHTHHHHHHHHHTTT-TTCEEEEBSSCC-TTTH
T ss_pred HHHHHHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEcc--C-----ccccCHHHHHHHHhhC-CCCeEEEECCCC-HHHH
Confidence 44444557888875 58999999999999999999932 1 011 245666666554 379999999994 5889
Q ss_pred HHHHH-hCCCEEEEcHHHHH
Q 017492 296 FKALA-LGASGIFIGRPVVY 314 (370)
Q Consensus 296 ~kala-lGAd~V~igr~~l~ 314 (370)
...++ .||++|. ||.++.
T Consensus 181 ~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 181 RNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp HHHHHSTTBCCEE-ECTTSC
T ss_pred HHHHhccCCEEEE-EchhcC
Confidence 99999 6999999 987754
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00017 Score=65.22 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCcee-ec----CC---CCCCHH---HHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC-
Q 017492 91 YATARAASAAGTIMT-LS----SW---STSSVE---EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD- 158 (370)
Q Consensus 91 ~~la~aa~~~G~~~~-~s----~~---~~~~~e---ei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd- 158 (370)
...++++.+.|+.+. +. .+ ....++ ++.+..+.+..+-+|.. |. .+.++.+.++|++.+.++.+
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn-d~---~~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV-EP---DQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS-SH---HHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec-CH---HHHHHHHHHcCCCEEEEEecC
Confidence 456777888886532 21 01 122343 44444333566777754 43 25677788899999887643
Q ss_pred -CCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec-CCH
Q 017492 159 -TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTA 236 (370)
Q Consensus 159 -~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~ 236 (370)
.+ +...+.++.+++. ++.+++-.. .++
T Consensus 102 ~~~--------------------------------------------------~~~~~~~~~~~~~-g~~ig~~~~p~t~ 130 (230)
T 1rpx_A 102 SST--------------------------------------------------IHLHRTINQIKSL-GAKAGVVLNPGTP 130 (230)
T ss_dssp TTC--------------------------------------------------SCHHHHHHHHHHT-TSEEEEEECTTCC
T ss_pred ccc--------------------------------------------------hhHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 11 0112345555553 444443321 233
Q ss_pred HHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.+.......++|+|.+... |+......+..++.+.++++... .++|++++|||+ .+++.+++.+|||+|.+||+
T Consensus 131 ~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSa 209 (230)
T 1rpx_A 131 LTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 209 (230)
T ss_dssp GGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHH
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 3333344578998865432 22111222334455566655442 268999999998 68998889999999999999
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
+..
T Consensus 210 I~~ 212 (230)
T 1rpx_A 210 VFG 212 (230)
T ss_dssp HHT
T ss_pred hhC
Confidence 864
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.2e-05 Score=70.32 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------C-------------------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G------------------- 256 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------g------------------- 256 (370)
...+.++++.+.+.+|+.+.+ +.+.++++.++++|+|.|++... |
T Consensus 62 ~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~ 141 (243)
T 4gj1_A 62 RQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVA 141 (243)
T ss_dssp CCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC
T ss_pred hHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEE
Confidence 367789999999999999986 57899999999999999998521 1
Q ss_pred ---ccC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 257 ---ARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 257 ---g~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++. .|+ ..+.++.+..+.+.. .++||+++||+++.+|+.+ +..+++
T Consensus 142 ~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~-~~ipviasGGv~~~~Dl~~-l~~~~~ 219 (243)
T 4gj1_A 142 VNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIF-PNICIQASGGVASLKDLEN-LKGICS 219 (243)
T ss_dssp --------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHC-TTSEEEEESCCCSHHHHHH-TTTTCS
T ss_pred ecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhc-CCCCEEEEcCCCCHHHHHH-HHccCc
Confidence 100 011 123556677776654 3699999999999999965 566799
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++|+.+
T Consensus 220 gvivg~Al~~g 230 (243)
T 4gj1_A 220 GVIVGKALLDG 230 (243)
T ss_dssp EEEECHHHHTT
T ss_pred hhehHHHHHCC
Confidence 99999998753
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=74.98 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHh--CCCEEEEcHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 312 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvi~~GGI~~~~dv~kalal--GAd~V~igr~~ 312 (370)
+.++.+.++ ++.|.+.....-+...|+ .++.+.++.++++. ++|||++|||++.+|+.+++.+ |+++|++||++
T Consensus 162 e~a~~~~~~-a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRKY-TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTTT-CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHHh-cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 778889999 999999432111222344 88999999887622 6999999999999999999988 99999999997
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0016 Score=58.82 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHcCCceeecCCC---------CCCHH----HHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEE
Q 017492 89 GEYATARAASAAGTIMTLSSWS---------TSSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~---------~~~~e----ei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~i 155 (370)
.|+.-.+.+.+.|..-+++|.. ....+ ||.+..+++..+|+. ..|.+.+.+..++..+.+ +-++|
T Consensus 8 An~~ei~~~~~~g~i~GVTTNPsli~k~~~~g~~~~~~~~ei~~~v~G~Vs~EV~-a~d~e~mi~eA~~L~~~~-~nv~I 85 (223)
T 3s1x_A 8 ANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVV-STKYEGMVEEARKIHGLG-DNAVV 85 (223)
T ss_dssp CCHHHHHHHHHHTCCCEEECCHHHHHHHSCTTCCHHHHHHHHHHHCSSCEEEECC-CCSHHHHHHHHHHHHHTC-TTEEE
T ss_pred CCHHHHHHHHhcCCcccccCCHHHHHhhhccCCCHHHHHHHHHHhCCCCEEEEEc-cCCHHHHHHHHHHHHHhC-CCEEE
Confidence 4677778888888877776542 22332 444555667777876 345555444444444443 22222
Q ss_pred ecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH---HHHHHHHhcCCcEEEEe
Q 017492 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---DVKWLQTITKLPILVKG 232 (370)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~i~~ir~~~~~Pv~vK~ 232 (370)
-+ +.+|+ .++.+.+. ++++-+=.
T Consensus 86 KI-----------------------------------------------------P~T~eGl~A~~~L~~~-GI~vn~Tl 111 (223)
T 3s1x_A 86 KI-----------------------------------------------------PMTEDGLRAIKTLSSE-HINTNCTL 111 (223)
T ss_dssp EE-----------------------------------------------------ESSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred Ee-----------------------------------------------------CCCHHHHHHHHHHHHC-CCcEEEEE
Confidence 11 11344 34455443 88998888
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+...|..|.++|+++|.. .-||-.|++.+....+.++.+.+ +.+..|++.+ +|+..++.++..+|||.+-+.
T Consensus 112 ifS~~QA~~Aa~AGa~yISP--fvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS-~Rn~~~v~~aa~~G~d~~Tip 188 (223)
T 3s1x_A 112 VFNPIQALLAAKAGVTYVSP--FVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVAS-IRNPIHVLRSAVIGADVVTVP 188 (223)
T ss_dssp ECSHHHHHHHHHTTCSEEEE--BSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBS-CCSHHHHHHHHHHTCSEEEEC
T ss_pred eCCHHHHHHHHHcCCeEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEe-CCCHHHHHHHHHcCCCEEEeC
Confidence 99999999999999999876 34554455556666666665543 3356666655 999999999999999999999
Q ss_pred HHHHHHHHhcC--HHHHHHHHHHH
Q 017492 310 RPVVYSLAAEG--EKGVRRVLEML 331 (370)
Q Consensus 310 r~~l~~~~~~G--~~~v~~~l~~l 331 (370)
-.++..+..+- ..|++.+.+.|
T Consensus 189 ~~vl~~l~~hpltd~~~~~F~~Dw 212 (223)
T 3s1x_A 189 FNVLKSLMKHPKTDEGLAKFLEDW 212 (223)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 98887665332 24555454444
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0017 Score=58.19 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHcCCceeecCC------C-CCCHH----HHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEec
Q 017492 89 GEYATARAASAAGTIMTLSSW------S-TSSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~------~-~~~~e----ei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (370)
.|+.-.+.+.+.|..-+++|. + ....+ ||.+..+++..+|+. ..|.+.+.+..++..+.+ +.++|-+
T Consensus 8 An~~ei~~~~~~g~i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~G~Vs~EV~-a~d~e~mi~ea~~l~~~~-~nv~IKI 85 (212)
T 3r8r_A 8 ANIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVI-SLKAEEMIEEGKELAKIA-PNITVKI 85 (212)
T ss_dssp CCHHHHHHHHHTTCEEEEECCHHHHHTSCSSCHHHHHHHHHHHCCSCEEEECC-CSSHHHHHHHHHHHHTTC-TTEEEEE
T ss_pred CCHHHHHHHHhcCCcccccCCHHHHHHccCCCHHHHHHHHHHhcCCCEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEEe
Confidence 477788889999988888765 1 22333 445555677778874 455555444444444432 2222211
Q ss_pred CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH---HHHHHHHhcCCcEEEEecC
Q 017492 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---DVKWLQTITKLPILVKGVL 234 (370)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~i~~ir~~~~~Pv~vK~v~ 234 (370)
+.+|+ .++.+.+ -++++-+=.+.
T Consensus 86 -----------------------------------------------------P~T~eGl~A~~~L~~-~GI~vn~Tlif 111 (212)
T 3r8r_A 86 -----------------------------------------------------PMTSDGLKAVRALTD-LGIKTNVTLIF 111 (212)
T ss_dssp -----------------------------------------------------ESSHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred -----------------------------------------------------CCCHHHHHHHHHHHH-CCCcEEEEEeC
Confidence 11344 3444443 38899888899
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+...|..|.++|+++|.. .-||-.|++.+....+.++.+.+ +.+..|++.+ +|+..++.++..+|||.+-+.-.
T Consensus 112 S~~Qa~~Aa~AGa~yISP--fvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS-~R~~~~v~~~a~~G~d~~Tip~~ 188 (212)
T 3r8r_A 112 NANQALLAARAGATYVSP--FLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAAS-IRHPQHVTEAALRGAHIGTMPLK 188 (212)
T ss_dssp SHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEBS-CCSHHHHHHHHHTTCSEEEECHH
T ss_pred CHHHHHHHHHcCCeEEEe--ccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEec-CCCHHHHHHHHHcCCCEEEcCHH
Confidence 999999999999999876 33554555666666666666544 3356666655 99999999999999999999988
Q ss_pred HHHHHHhcC--HHHHHHHHHH
Q 017492 312 VVYSLAAEG--EKGVRRVLEM 330 (370)
Q Consensus 312 ~l~~~~~~G--~~~v~~~l~~ 330 (370)
++..+..+- ..|++.+.+.
T Consensus 189 vl~~l~~hpltd~~~~~F~~D 209 (212)
T 3r8r_A 189 VIHALTKHPLTDKGIEQFLAD 209 (212)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHH
Confidence 887665332 2344444433
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=66.95 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=56.4
Q ss_pred hcCCcEEEEec------CCHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 223 ITKLPILVKGV------LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 223 ~~~~Pv~vK~v------~~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.+++|+++=.. .+++ .++.+.++|+|.|.++-.+ +.+.++.+.. .+||++.||+...
T Consensus 169 ~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~-----------e~~~~vv~~~--~vPVv~~GG~~~~ 235 (295)
T 3glc_A 169 KVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE-----------KGFERIVAGC--PVPIVIAGGKKLP 235 (295)
T ss_dssp TTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT-----------TTHHHHHHTC--SSCEEEECCSCCC
T ss_pred HcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH-----------HHHHHHHHhC--CCcEEEEECCCCC
Confidence 35789887211 2333 4677889999999986321 2356666654 7999999999853
Q ss_pred -H----HHHHHHHhCCCEEEEcHHHHH
Q 017492 293 -T----DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 -~----dv~kalalGAd~V~igr~~l~ 314 (370)
+ .+..++.+||+++.+||.++.
T Consensus 236 ~~~~l~~v~~ai~aGA~Gv~vGRnI~q 262 (295)
T 3glc_A 236 EREALEMCWQAIDQGASGVDMGRNIFQ 262 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHHHHhCCeEEEeHHHHhc
Confidence 3 455667899999999998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.4e-05 Score=68.38 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.++|+|.|.++..... .......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+.++.
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 35678889999999998742211 011223456677777655 89999999999999999999999999999998874
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=68.90 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+++..+. +|++ .+-+.++++.+.++|+|+|.++| .+.+.+.++++.+.++++|.++||| +.+
T Consensus 197 ~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~ASGGI-t~~ 264 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEVSGNV-TAE 264 (296)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 457888887643 5554 56788999999999999999976 2346667777766668999999999 999
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
.+.+....|+|.+.+|+..
T Consensus 265 ~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 265 TLREFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHHHTTCSEEECSHHH
T ss_pred HHHHHHHcCCCEEEEeHHH
Confidence 9999999999999999843
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=5.3e-05 Score=69.42 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.++.+.++|+|.|.++.-.+.. ......++.+.++++.. ++||++.|||++.+++.++++.|||+|.+|+..+.
T Consensus 34 ~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 34 ELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 55788899999999987532211 11223455667776654 79999999999999999999999999999998764
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00033 Score=63.79 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccCC-c------------------------cC-----
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNHG-A------------------------RQ----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~g-g------------------------~~----- 259 (370)
+....++.+|+.++.|+-+-+ +.+++. .+.+.++|+|+|++...- . +.
T Consensus 44 ~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~ 123 (231)
T 3ctl_A 44 LSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMK 123 (231)
T ss_dssp BCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGT
T ss_pred hcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHH
Confidence 356688899988878877654 345543 678888999999874211 1 00
Q ss_pred -----CC---------------CccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc-HHHHHH
Q 017492 260 -----LD---------------YVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG-RPVVYS 315 (370)
Q Consensus 260 -----~~---------------~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~ig-r~~l~~ 315 (370)
.| ..+..++-+.++++... .+++|.++|||.. +.+.++..+|||.+.+| |+++.+
T Consensus 124 ~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~-~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 124 YYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQ-ATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp TTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCST-TTHHHHHHHTCCEEEECTTTTGGG
T ss_pred HHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCH-HHHHHHHHcCCCEEEEccHHHhCC
Confidence 00 12334555666665542 2689999999985 78888999999999999 876531
Q ss_pred HHhcCHHHHHHHHHHHHHHHH
Q 017492 316 LAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~ 336 (370)
.. ...+.++.+++.++
T Consensus 203 ---~d--~~~~~~~~l~~~~~ 218 (231)
T 3ctl_A 203 ---AE--NIDEAWRIMTAQIL 218 (231)
T ss_dssp ---CS--SHHHHHHHHHHHHH
T ss_pred ---CC--cHHHHHHHHHHHHH
Confidence 11 02345555555444
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00029 Score=62.47 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=50.2
Q ss_pred CHHH-HHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 235 TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 235 ~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
++++ ++.+.+.|+|.|.+... ......+.... ..+.++... ++|++++|||+ .+++.++++.|||+|.+||++
T Consensus 115 ~p~~~~~~~~~~g~d~v~~~~~-~~~~~~g~~~~~~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI 189 (207)
T 3ajx_A 115 DKATRAQEVRALGAKFVEMHAG-LDEQAKPGFDLNGLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAI 189 (207)
T ss_dssp SHHHHHHHHHHTTCSEEEEECC-HHHHTSTTCCTHHHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHH
T ss_pred ChHHHHHHHHHhCCCEEEEEec-ccccccCCCchHHHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeec
Confidence 5555 67777889999955321 00001111112 344444332 68999999998 688888999999999999998
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 190 ~~ 191 (207)
T 3ajx_A 190 YG 191 (207)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=66.86 Aligned_cols=77 Identities=26% Similarity=0.296 Sum_probs=60.3
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+.++.+.++|+|+|.++...+.. ......++.+.++++.. ++||++.|||++.+++.+++.+|||+|.+|++++.
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 3567888999999999987532211 11223456777777766 79999999999999999999999999999998763
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00069 Score=60.40 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=56.7
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
++.+.+.|+++++++.+ ..+.+.++++..+ .-+++++|||+. +.++.+++++|||.+.+||+++.+
T Consensus 125 ~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~-~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a-- 191 (208)
T 2czd_A 125 IEVANEIEPFGVIAPGT----------RPERIGYIRDRLK-EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA-- 191 (208)
T ss_dssp HHHHHHHCCSEEECCCS----------STHHHHHHHHHSC-TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS--
T ss_pred HHHHHHhCCcEEEECCC----------ChHHHHHHHHhCC-CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC--
Confidence 56778899999987643 2245566666653 334679999986 558999999999999999998752
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 017492 318 AEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el 335 (370)
.. ..+.++.+++++
T Consensus 192 -~d---p~~~~~~l~~~i 205 (208)
T 2czd_A 192 -PN---PREAAKAIYDEI 205 (208)
T ss_dssp -SS---HHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHHH
Confidence 12 334555665554
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00036 Score=61.55 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=96.5
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
..+|=|+ .+-..+.+.+++++++|- -++|++|... |+. . ....-+|
T Consensus 31 ~~ifll~--g~i~~l~~~v~~lk~~~K-~v~Vh~Dli~----------Gls------~---------------d~~ai~f 76 (192)
T 3kts_A 31 TYMVMLE--THVAQLKALVKYAQAGGK-KVLLHADLVN----------GLK------N---------------DDYAIDF 76 (192)
T ss_dssp CEEEECS--EETTTHHHHHHHHHHTTC-EEEEEGGGEE----------TCC------C---------------SHHHHHH
T ss_pred CEEEEec--CcHHHHHHHHHHHHHcCC-eEEEecCchh----------ccC------C---------------cHHHHHH
Confidence 3455454 466778889999999985 5566887532 111 0 0111233
Q ss_pred hhhcCCCCc----cHHHHHHHHHhcCCcEEEEec----CCHH-HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHH
Q 017492 204 VAGQIDRSL----SWKDVKWLQTITKLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (370)
Q Consensus 204 ~~~~~d~~~----~~~~i~~ir~~~~~Pv~vK~v----~~~~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~ 274 (370)
+.....++. ....++..++ .++..+-+.- .+.+ ..+.+.+...|+|.+-- |+.+ ..+.+++
T Consensus 77 L~~~~~pdGIIsTk~~~i~~Ak~-~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiLP--------Gi~p-~iI~~i~ 146 (192)
T 3kts_A 77 LCTEICPDGIISTRGNAIMKAKQ-HKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLP--------GIIP-EQVQKMT 146 (192)
T ss_dssp HHHTTCCSEEEESCHHHHHHHHH-TTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEEC--------TTCH-HHHHHHH
T ss_pred HHhCCCCCEEEeCcHHHHHHHHH-CCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEECC--------chhH-HHHHHHH
Confidence 333233433 2345666655 4776666653 1223 34566677899998731 1222 6788888
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+.+ ++|||+.|+|++.+|+.+++..||++|..++..+|.
T Consensus 147 ~~~--~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 147 QKL--HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp HHH--CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred Hhc--CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 877 899999999999999999999999999999998883
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.7e-05 Score=70.14 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecC
Q 017492 214 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GG 288 (370)
.+.++.+|+..+ .++.+ .+.+.++++.+.++|+|+|.+++. + .+.+.++++.+. .++||.++||
T Consensus 169 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~---~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL-------S---VLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC-------C---HHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCcEEEEECC
Confidence 456888888775 45655 677889999999999999999872 1 244444444432 3599999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
| +.+++.+.+..|||.+.+|+...
T Consensus 238 I-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 238 I-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp C-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred C-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 9 88999999999999999999754
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=9e-05 Score=69.01 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+..+.+.|...|.+...+ .+...+.+.++++.+.+.+||++.|||++.+|+.+++.+|||.|.+|++++.
T Consensus 192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence 344567788888887432 2455688888888763379999999999999999999999999999998763
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00026 Score=64.38 Aligned_cols=76 Identities=25% Similarity=0.247 Sum_probs=59.8
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+.++.+.++|+|.|.+..-.+.. ...+.. ..+.++++.. ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHT-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCcccc-cCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 3466888999999999996421111 122334 7788888776 89999999999999999999999999999998764
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.65 E-value=5.2e-05 Score=69.20 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.++|+|.|.++...... ......++.+.+++ .. .+||++.|||++.+++.+++++|||+|++|+.++.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 466788899999999996421100 01234567777776 54 79999999999999999999999999999998764
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00083 Score=62.74 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CC-HHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc----
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LT-AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---- 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~-~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---- 277 (370)
...++|+.+++.++ +..+|.| ++ .+. .+.+.++|+|+|..|..-+ .+.++.+.+.-+++.+
T Consensus 136 ~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~----~~gAT~edV~lM~~~v~~~~ 210 (297)
T 4eiv_A 136 RIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLG----ATHATMFTVHLISIALREYM 210 (297)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHHHh
Confidence 35567888888884 5677876 32 331 3567899999999986422 2234444444343333
Q ss_pred ------------------cCCCcEEEe-cCCCCHHHHHHHHHhCCC
Q 017492 278 ------------------QGRIPVFLD-GGVRRGTDVFKALALGAS 304 (370)
Q Consensus 278 ------------------~~~ipvi~~-GGI~~~~dv~kalalGAd 304 (370)
+.++.|-++ ||||+.+|+.+++.+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e 256 (297)
T 4eiv_A 211 VRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE 256 (297)
T ss_dssp CC------------------CCEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH
Confidence 357999999 999999999999994433
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00044 Score=64.95 Aligned_cols=86 Identities=26% Similarity=0.332 Sum_probs=67.7
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.|- ..+.+.++++.++.++|+.++|||. .
T Consensus 184 ~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGIt-~ 251 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNMT-L 251 (286)
T ss_dssp HHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSCC-H
T ss_pred HHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCCC-H
Confidence 35788888763 45655 667899999999999999999763 2234556656555579999999995 7
Q ss_pred HHHHHHHHhCCCEEEEcHHH
Q 017492 293 TDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~ 312 (370)
+.+.+..+.|+|.+.+|+..
T Consensus 252 eni~~~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 252 ERAKAAAEAGVDYVSVGALT 271 (286)
T ss_dssp HHHHHHHHHTCSEEECTHHH
T ss_pred HHHHHHHHcCCCEEEEcHHH
Confidence 99999999999999998854
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=64.05 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.++|+|.|.+..-.+.. ...... ..+.++++.. ++|+++.|||++++++.+++.+|||.|.+|+..+.
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence 356788899999999986421111 122344 7788888776 89999999999999999999999999999997653
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00013 Score=65.41 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=59.7
Q ss_pred ecCCHHHHHHHHHcCccEEEEccCCccC-C-C-CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ-L-D-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 232 ~v~~~~~a~~a~~aG~d~I~vs~~gg~~-~-~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+++++..+. .|+|+|.++.-..+. . + +.+..++.+.++.+.+..++||++.|||. ++++.+++.+||++|.+
T Consensus 94 s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav 171 (210)
T 3ceu_A 94 SCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVV 171 (210)
T ss_dssp EECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEE
T ss_pred ecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEE
Confidence 357899998888 999999986421111 1 1 12335677777766521279999999998 79999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
++.+..
T Consensus 172 ~s~i~~ 177 (210)
T 3ceu_A 172 LGDLWN 177 (210)
T ss_dssp SHHHHT
T ss_pred hHHhHc
Confidence 999864
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=67.73 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=59.0
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
..+.++.+.++|+|.|.++.-.+... .....++.+.++++.. ++||++.|||++.+|+.+++.+|||+|.+|+.++
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 34668889999999999965221111 1123567778777665 8999999999999999999999999999999876
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00057 Score=61.99 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=51.5
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.-.|...|.+.. .|+ ....+.+.++++.+ +++||++.|||++++++.+++ .|||.|.+|+++..
T Consensus 149 a~~~g~~~VYld~-sG~-----~~~~~~i~~i~~~~-~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~ 213 (228)
T 3vzx_A 149 SELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE 213 (228)
T ss_dssp HHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHHC-SSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred HHHcCCCEEEecC-CCC-----cCCHHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence 3345688888876 332 12577888888875 259999999999999998887 79999999999875
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0031 Score=56.44 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=66.7
Q ss_pred HHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+++ .+.++.++.. .+......+.+.|.+.+++.- +....+.|.. ..+.+..+++..+.++||+++|||+ .+
T Consensus 99 ~~~~~~-~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~-a~~~~~~G~~g~~~~i~~lr~~~~~~~~i~v~GGI~-~~ 175 (216)
T 1q6o_A 99 LDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHR-SRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LE 175 (216)
T ss_dssp HHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEEC-CHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GG
T ss_pred HHHHHH-cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHH-HHHHHhcCCCCCHHHHHHHHHhcCCCCcEEEECCcC-hh
Confidence 444444 4666554433 234566667777887777621 1100001101 2455666666554478899999998 67
Q ss_pred HHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
.+.+++.+|||.+.+||+++.+ .. ..+.++.++++++
T Consensus 176 ~~~~~~~aGad~ivvG~~I~~a---~d---p~~~~~~~~~~i~ 212 (216)
T 1q6o_A 176 DLPLFKGIPIHVFIAGRSIRDA---AS---PVEAARQFKRSIA 212 (216)
T ss_dssp GGGGGTTSCCSEEEESHHHHTS---SC---HHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCEEEEeehhcCC---CC---HHHHHHHHHHHHH
Confidence 7888899999999999998642 12 2334555555554
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0003 Score=66.58 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=66.2
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCC
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI 289 (370)
+.++.+|+..+ .++++ .+.+.++++.+.++|+|+|.++|. + .+.+.++++.+. .+++|.++|||
T Consensus 185 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~---~~~l~~~v~~l~~~~~~~~I~ASGGI 253 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF-------K---PEELHPTATVLKAQFPSVAVEASGGI 253 (299)
T ss_dssp HHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------C---HHHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCeeEEEECCC
Confidence 45778887764 45654 677889999999999999999873 1 244444444432 35999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+++.+....|||.+.+|+..
T Consensus 254 -t~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 254 -TLDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp -CTTTHHHHCCTTCCEEECTHHH
T ss_pred -CHHHHHHHHHCCCCEEEEChhh
Confidence 8899999889999999999954
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0004 Score=64.99 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+.. ..||.| .+-+.++++.+.++|+|.|.+.|. +.+.+.++++.+++++++.++||| +.+.
T Consensus 188 Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaSGGI-t~~~ 255 (287)
T 3tqv_A 188 AVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVSGNI-DRNS 255 (287)
T ss_dssp HHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEESSC-CTTT
T ss_pred HHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEECCC-CHHH
Confidence 466666654 467766 678899999999999999999873 235677777766668999999999 5588
Q ss_pred HHHHHHhCCCEEEEcHHH
Q 017492 295 VFKALALGASGIFIGRPV 312 (370)
Q Consensus 295 v~kalalGAd~V~igr~~ 312 (370)
+.++...|+|.+.+|...
T Consensus 256 i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 256 IVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp HHHHHTTTCSEEECSHHH
T ss_pred HHHHHHcCCCEEEEChhh
Confidence 888888999999999754
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00028 Score=69.20 Aligned_cols=98 Identities=22% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecC--CHHHHHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEE
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVL--TAEDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~--~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+++...+.++++++. +.|++++... ..+.++.+.++|+|.+.+.+....+...++ .++..+.++++.. ++||++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~ 216 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA 216 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE
Confidence 444445567777775 8899888653 245577788999999988532211111222 1555677777776 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr 310 (370)
||+.+++|+.+++.+|||+|.+|+
T Consensus 217 -ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 217 -GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp -ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred -CCcCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999986
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0013 Score=59.28 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.+.++.+.+.|++.+++.-....+.++...+...+..+++..+.+.+|.++|||+ .+++.++..+|||.+.+||++.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI~-~~~~~~~~~aGad~~VvG~~I~ 200 (221)
T 3exr_A 122 WTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGLS-VDTLKLFEGVDVFTFIAGRGIT 200 (221)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSCC-GGGGGGGTTCCCSEEEECHHHH
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCCC-HHHHHHHHHCCCCEEEECchhh
Confidence 467778888888999888732111122232334445566665554478899999995 5678788889999999999875
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
.+ .. ....++.++++++.
T Consensus 201 ~a---~d---p~~a~~~~~~~~~~ 218 (221)
T 3exr_A 201 EA---KN---PAGAARAFKDEIKR 218 (221)
T ss_dssp TS---SS---HHHHHHHHHHHHHH
T ss_pred CC---CC---HHHHHHHHHHHHHH
Confidence 32 11 22345566666654
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00079 Score=63.93 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=67.8
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+.. ..||.+ .+-+.++++.++++|+|.|.+.|. +.+.+.++++.+.++++|.++|||. .+
T Consensus 220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGIt-~~ 287 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNIT-LD 287 (320)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-HH
T ss_pred HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCCC-HH
Confidence 3577777766 345554 678899999999999999999873 3456777777666689999999995 68
Q ss_pred HHHHHHHhCCCEEEEcHH
Q 017492 294 DVFKALALGASGIFIGRP 311 (370)
Q Consensus 294 dv~kalalGAd~V~igr~ 311 (370)
.+.+..+.|+|.+.+|+.
T Consensus 288 ~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 288 NLKECAETGVDYISVGAL 305 (320)
T ss_dssp HHHHHHTTTCSEEECTHH
T ss_pred HHHHHHHcCCCEEEECce
Confidence 888887899999999984
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=53.34 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=81.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEec
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 287 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~G 287 (370)
+|+-++.++... ++++-+=.+.+.+.|..+.++|++.|... -||-.+.+.+....+.++...+ +.+..|++.
T Consensus 99 T~eGl~Ai~~L~~eGI~vNvTliFS~~QA~laa~AGa~~iSpF--VgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A- 175 (230)
T 1vpx_A 99 TPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA- 175 (230)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHhCCCeEEEec--cchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-
Confidence 455444444332 88998888999999999999999988763 3443334444555555554433 335667776
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC--HHHHHHHHHHHHH
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLRE 333 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~l~~~~~~G--~~~v~~~l~~l~~ 333 (370)
++|++.++.++..+|+|.+-+.-.++..+..++ .+|++.+.+.+.+
T Consensus 176 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~ 223 (230)
T 1vpx_A 176 SIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK 223 (230)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999998999999999999888776544 3455555555443
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=66.85 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=86.1
Q ss_pred cCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcc
Q 017492 100 AGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (370)
Q Consensus 100 ~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~ 179 (370)
...|+++++++..+.++++.......|+|+|...+++.+.++++++++.|+. +++|. |.
T Consensus 45 l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~~---v~v~~---g~--------------- 103 (336)
T 1ypf_A 45 FKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLI---ASISV---GV--------------- 103 (336)
T ss_dssp ESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCC---CEEEE---CC---------------
T ss_pred ecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHHHHHhcCCe---EEEeC---CC---------------
Confidence 3457888999888888886532245789999888888778888877765531 11110 00
Q ss_pred ccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC--ccEEEEccCCc
Q 017492 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG--AAGIIVSNHGA 257 (370)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG--~d~I~vs~~gg 257 (370)
..+.+ +.++.+.++| ++.|.+....|
T Consensus 104 ---------------------------------~~~~~-------------------~~a~~~~~~g~~~~~i~i~~~~G 131 (336)
T 1ypf_A 104 ---------------------------------KEDEY-------------------EFVQQLAAEHLTPEYITIDIAHG 131 (336)
T ss_dssp ---------------------------------SHHHH-------------------HHHHHHHHTTCCCSEEEEECSSC
T ss_pred ---------------------------------CHHHH-------------------HHHHHHHhcCCCCCEEEEECCCC
Confidence 00011 2355667778 88887632111
Q ss_pred cCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 258 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 258 ~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.....++.+..+++.. ..+++..|.|.+.+++.++..+|||+|.++
T Consensus 132 ----~~~~~~~~i~~lr~~~--~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 132 ----HSNAVINMIQHIKKHL--PESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp ----CSHHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ----CcHHHHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 1234567788888876 334455577999999999999999999993
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00015 Score=68.56 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=53.8
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCC------CcEEEe
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLD 286 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~------ipvi~~ 286 (370)
+.++.+|+..+ .++++ .+.+.++++.+.++|+|+|.++|.+ .+.+.++++.+... ++|.++
T Consensus 187 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEE
T ss_pred HHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEEE
Confidence 45778887764 45655 5677799999999999999987631 23444444444323 999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
||| +.+++.+....|+|.+.+|+..
T Consensus 256 GGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCC-CC------CCCSCSEEECGGGT
T ss_pred CCC-CHHHHHHHHHcCCCEEEEechh
Confidence 999 8899999889999999999864
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00078 Score=63.26 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=67.1
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+.. ..||.| .+-+.++++.++++|+|.|.+.|- +.+.+.++++.+++++.+.++||| +.+
T Consensus 196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGI-t~~ 263 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCV-NIR 263 (300)
T ss_dssp HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSC-CTT
T ss_pred HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCC-CHH
Confidence 3467777765 355554 578899999999999999999883 335666666666678999999999 458
Q ss_pred HHHHHHHhCCCEEEEcHH
Q 017492 294 DVFKALALGASGIFIGRP 311 (370)
Q Consensus 294 dv~kalalGAd~V~igr~ 311 (370)
.+.++...|+|.+.+|..
T Consensus 264 ~i~~~A~tGVD~IsvGal 281 (300)
T 3l0g_A 264 NVRNIALTGVDYISIGCI 281 (300)
T ss_dssp THHHHHTTTCSEEECGGG
T ss_pred HHHHHHHcCCCEEEeCcc
Confidence 888887899999999974
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0026 Score=60.25 Aligned_cols=94 Identities=26% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCcEEEEec---------CCH----H-HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-c-C
Q 017492 216 DVKWLQTITKLPILVKGV---------LTA----E-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-Q-G 279 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v---------~~~----~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-~-~ 279 (370)
.+.+....+++|+++=.. .++ . .++.+.+.|+|.|.+.-. .+ +..+++.+.++.+.. . .
T Consensus 146 ~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~----~~-~~g~~~~~~~vv~~~~~~~ 220 (304)
T 1to3_A 146 EFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMP----LY-GKGARSDLLTASQRLNGHI 220 (304)
T ss_dssp HHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCG----GG-GCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCC----cC-CCCCHHHHHHHHHhccccC
Confidence 344444456899887653 112 2 267788899999988421 00 111456666665551 1 2
Q ss_pred CCc-EEEecCCCCHH----HHHHHHHhCCCEEEEcHHHHHH
Q 017492 280 RIP-VFLDGGVRRGT----DVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 280 ~ip-vi~~GGI~~~~----dv~kalalGAd~V~igr~~l~~ 315 (370)
.+| |++.||+ +.+ .+..++..||++|.+||.+...
T Consensus 221 ~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 221 NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 789 9999999 553 3777888999999999998753
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00077 Score=59.87 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=55.4
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.++.+...|+..+.+.+-+......+.. ++.+.++.... ++||++.||+.+++|+.+++..||++|++|++++.
T Consensus 134 ~~i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 134 DWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 45677778888866664321111112232 66777776654 89999999999999999999999999999999875
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0017 Score=58.94 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHH---HHHHhcCCcEEEEec--CCHHHHHHHHHcC-ccEEEEcc-CCc-cCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 215 KDVK---WLQTITKLPILVKGV--LTAEDARIAVQAG-AAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 215 ~~i~---~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG-~d~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.++ .+|+. +..+.+-.- ...+.++...+.| +|.|.+-. +.| .+....+..++-+.++++... +++|.++
T Consensus 102 ~~i~~~~~i~~~-G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~Vd 179 (227)
T 1tqx_A 102 RCIQLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVD 179 (227)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEE
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEEE
Confidence 4566 77664 544444331 2345567777776 99996643 222 123346677788888887764 7899999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
|||. .+.+.++.++|||.+.+||+++.+ .. ..+.++.+++.++
T Consensus 180 GGI~-~~ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 180 GGLN-IETTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSVQ 222 (227)
T ss_dssp SSCC-HHHHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHHH
Confidence 9997 589999999999999999987631 11 3345555555444
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0077 Score=53.73 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCcEEE--E----e--c---CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 215 KDVKWLQTITKLPILV--K----G--V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~v--K----~--v---~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.++++++.+++|++- | + . .+.+.+..+.++|+|.|.+...-.. +......+.+..+++.+ +..++
T Consensus 46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~--~p~~~~~~~i~~~~~~~-~~~~v 122 (223)
T 1y0e_A 46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQ--RPKETLDELVSYIRTHA-PNVEI 122 (223)
T ss_dssp HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSC--CSSSCHHHHHHHHHHHC-TTSEE
T ss_pred HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeeccc--CcccCHHHHHHHHHHhC-CCceE
Confidence 4578888888899841 1 1 1 3467888999999999988532110 00012346677777765 35666
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+. ++.+.+++.++..+|+|.++++.+
T Consensus 123 ~~--~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 123 MA--DIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred Ee--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence 55 678999999999999999988654
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0062 Score=55.20 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=60.4
Q ss_pred cHHHHHHHHHhcCCcEE--EEe-------c--CCHHHHHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCC
Q 017492 213 SWKDVKWLQTITKLPIL--VKG-------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 280 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~--vK~-------v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ 280 (370)
+.+.|+++|+.+++||+ .|- . .+.+++..+.++|+|.|.+...... .+..+ +.+..+.+ . .
T Consensus 57 ~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g 129 (229)
T 3q58_A 57 GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--G 129 (229)
T ss_dssp SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--T
T ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--C
Confidence 35688999999999987 231 1 3457899999999999987543210 12222 33444433 2 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+++++ .+.+.+++.++..+|||.|.+
T Consensus 130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 130 LLAMA--DCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp CEEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred CEEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence 55555 689999999999999999975
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00093 Score=60.88 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=57.6
Q ss_pred CHHHHHHHHHcCc-----cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 235 TAEDARIAVQAGA-----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 235 ~~~~a~~a~~aG~-----d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+++.++...++|. ..|.+.. .|. ....+.+.++++.. .++|+++.|||++++++.+++. |||.|.+|
T Consensus 147 ~~e~~~~~a~~g~~~l~~~~Vyl~~-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 147 DKELAASYALVGEKLFNLPIIYIEY-SGT-----YGNPELVAEVKKVL-DKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEC-TTS-----CCCHHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEeC-CCC-----cchHHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5666777777776 6777654 232 44677888888764 2689999999999999999888 99999999
Q ss_pred HHHHHH
Q 017492 310 RPVVYS 315 (370)
Q Consensus 310 r~~l~~ 315 (370)
++++..
T Consensus 219 Sa~v~~ 224 (234)
T 2f6u_A 219 NVIYEK 224 (234)
T ss_dssp HHHHHH
T ss_pred hHHHhC
Confidence 998753
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0071 Score=54.92 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhcCCcEEE--Ee-------c--CCHHHHHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCC
Q 017492 213 SWKDVKWLQTITKLPILV--KG-------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 280 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v--K~-------v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ 280 (370)
+.+.|+++|+.+++||+- |- . .+.+++..+.++|+|.|.+...... .|..+ +.+..+.+ . .
T Consensus 57 ~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g 129 (232)
T 3igs_A 57 GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--H 129 (232)
T ss_dssp SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--T
T ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--C
Confidence 356889999999999862 31 1 3467899999999999987543211 12222 33343333 2 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+++++ .+.+.+++.++..+|||.|.+
T Consensus 130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 130 LLTMA--DCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp CEEEE--ECCSHHHHHHHHHTTCSEEEC
T ss_pred CEEEE--eCCCHHHHHHHHhCCCCEEEE
Confidence 55555 689999999999999999975
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00037 Score=65.34 Aligned_cols=86 Identities=23% Similarity=0.206 Sum_probs=65.8
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCC
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI 289 (370)
+.++.+|+..+ .+|.+ .+.+.++++.+.++|+|.|.+.|- +.+.+.++++.+. .++++.++|||
T Consensus 181 ~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 181 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCceEEEECCC
Confidence 35778887763 56665 577899999999999999999872 2244444444443 27999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+.+.++...|+|.+.+|+..
T Consensus 250 -t~eni~~~a~tGVD~IsvGslt 271 (285)
T 1o4u_A 250 -TEENVSLYDFETVDVISSSRLT 271 (285)
T ss_dssp -CTTTGGGGCCTTCCEEEEGGGT
T ss_pred -CHHHHHHHHHcCCCEEEEeHHH
Confidence 4588888888999999999853
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=64.77 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.++.+.++|+|.|.+....|. ....++.+..+++.+ +++||++ |++.+.+++.++..+|||++.+|
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~----~~~~~~~i~~i~~~~-~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGN----SVYQIAMVHYIKQKY-PHLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEeeccCCc----chhHHHHHHHHHHhC-CCCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 46788899999999999432221 112457788888876 3688876 77999999999999999999774
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0048 Score=57.56 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=85.4
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.++++|++.+++.+-.| |
T Consensus 105 Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~------------------------------------------------d 136 (287)
T 3iwp_A 105 YSDREIEVMKADIRLAKLYGADGLVFGALTE------------------------------------------------D 136 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC------------------------------------------------C
Confidence 4334456777888889999999998753211 2
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. ++++.+=-. .++.. .+.+.+.|+|.|-.|+. .......++.|.++.+..+++++|
T Consensus 137 g~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~----~~~a~~Gl~~Lk~Lv~~a~~rI~I 212 (287)
T 3iwp_A 137 GHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGC----DSSALEGLPLIKRLIEQAKGRIVV 212 (287)
T ss_dssp SCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTT----SSSTTTTHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC----CCChHHhHHHHHHHHHHhCCCCEE
Confidence 234555555555554 466665433 23443 57788899999988542 223455667777777766668999
Q ss_pred EEecCCCCHHHHHHHHH-hCCCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALA-LGASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kala-lGAd~V~ig 309 (370)
++.|||+. +.+.+.+. +|++.+=..
T Consensus 213 maGGGV~~-~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 213 MPGGGITD-RNLQRILEGSGATEFHCS 238 (287)
T ss_dssp EECTTCCT-TTHHHHHHHHCCSEEEEC
T ss_pred EECCCcCH-HHHHHHHHhhCCCEEeEC
Confidence 99999976 77777776 899877554
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=62.04 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=65.2
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+.. ..|+.| .+-+.++++.++++|+|.|.+.|. +.+.+.++++.+.+++++.++||| +.+
T Consensus 198 ~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaSGGI-~~~ 265 (298)
T 3gnn_A 198 EALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVSGGV-NFD 265 (298)
T ss_dssp HHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEESSC-STT
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CHH
Confidence 3477777765 344433 367889999999999999999873 235566666655568999999999 558
Q ss_pred HHHHHHHhCCCEEEEcHH
Q 017492 294 DVFKALALGASGIFIGRP 311 (370)
Q Consensus 294 dv~kalalGAd~V~igr~ 311 (370)
.+.+....|+|.+.+|+.
T Consensus 266 ~i~~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 266 TVRAIAETGVDRISIGAL 283 (298)
T ss_dssp THHHHHHTTCSEEECGGG
T ss_pred HHHHHHHcCCCEEEECCe
Confidence 888888899999999984
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0054 Score=58.56 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCcEEEEecC---------CH-----------HHHHHH--HHcCccEEEEccCCccC----C------CCc
Q 017492 216 DVKWLQTITKLPILVKGVL---------TA-----------EDARIA--VQAGAAGIIVSNHGARQ----L------DYV 263 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~---------~~-----------~~a~~a--~~aG~d~I~vs~~gg~~----~------~~~ 263 (370)
.+..-+..+++|+++=.+. +. +-++.+ .+.|+|.+.+--.|-.. + ...
T Consensus 151 rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~ 230 (332)
T 3iv3_A 151 RIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSK 230 (332)
T ss_dssp HHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCH
T ss_pred HHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccH
Confidence 3444445569998874321 11 113445 46799999995332110 0 011
Q ss_pred cchHHHHHHHHHHccCCCcEE-EecCCCCHHHHHH----HHHhCC--CEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVF-LDGGVRRGTDVFK----ALALGA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi-~~GGI~~~~dv~k----alalGA--d~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
....+...++.+.. .+|++ .+||. +.+++.+ |+..|| .+|.+||.... .++..+.+.=.+..+
T Consensus 231 ~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq-------~~v~~~~~~~~~~~~ 300 (332)
T 3iv3_A 231 EEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKAGAKFNGVLCGRATWA-------GSVQVYMEEGKEAAR 300 (332)
T ss_dssp HHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHHTCCCCEEEECHHHHT-------THHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCcceEEeeHHHHH-------hhhhhhccccHHHHH
Confidence 11223456665554 79965 79998 4556555 455899 99999998754 233334443345677
Q ss_pred HHHHHcCCCChhhhcccc
Q 017492 337 LAMALSGCRSLKEITRDH 354 (370)
Q Consensus 337 ~~m~~~G~~~l~~l~~~~ 354 (370)
.+|...|..+|++|+...
T Consensus 301 ~~l~~~g~~~i~~l~~v~ 318 (332)
T 3iv3_A 301 QWLRTSGLQNINELNKVL 318 (332)
T ss_dssp HHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 788888888888887543
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0034 Score=64.04 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHcC---ccEEEEccCCccC-C-CC--ccchHHHHHHHHHHc----cCCCcEEEecCCCCHHHHHHHHH-
Q 017492 233 VLTAEDARIAVQAG---AAGIIVSNHGARQ-L-DY--VPATIMALEEVVKAT----QGRIPVFLDGGVRRGTDVFKALA- 300 (370)
Q Consensus 233 v~~~~~a~~a~~aG---~d~I~vs~~gg~~-~-~~--~~~~~~~l~~i~~~~----~~~ipvi~~GGI~~~~dv~kala- 300 (370)
+.+.++++.+.+.| +|+|.++.-..+. . +. .+..++.+.++.+.+ ..++|+++.||| +.+++.+.+.
T Consensus 115 ~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~ 193 (540)
T 3nl6_A 115 VGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQ 193 (540)
T ss_dssp ECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHh
Confidence 47899999999999 9999986432221 1 11 123466677776654 137999999999 7799999987
Q ss_pred -------hCCCEEEEcHHHHH
Q 017492 301 -------LGASGIFIGRPVVY 314 (370)
Q Consensus 301 -------lGAd~V~igr~~l~ 314 (370)
.||++|.++++++.
T Consensus 194 ~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 194 CVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp CBCTTSSCBCSCEEESHHHHT
T ss_pred hcccccccCceEEEEeHHHhc
Confidence 89999999998864
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=60.17 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred CHHHHHHHHHcCc----cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 235 TAEDARIAVQAGA----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 235 ~~~~a~~a~~aG~----d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+++.++...++|. -.|.+.. .|. ....+.+.++++.. .++|+++.|||++++++.+++. |||+|.+|+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTC-SSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CHHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 4677777777664 5666544 232 44667888888754 2689999999999999999888 999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
+++.
T Consensus 212 a~v~ 215 (240)
T 1viz_A 212 AVYE 215 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0071 Score=54.37 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=54.8
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCC--ccC---CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g--g~~---~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal 299 (370)
++.+++= +.+.++.+++.+.|.+.|-+-+.- |+. ....+.......+..+.+..++||++.|||.+++++..+.
T Consensus 111 Gl~~iv~-v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~ 189 (219)
T 2h6r_A 111 GLETIVC-TNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAAL 189 (219)
T ss_dssp TCEEEEE-ESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHH
T ss_pred CCeEEEE-eCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHh
Confidence 5544332 234455677777888877765421 121 1111111222222223333479999999999999999888
Q ss_pred HhCCCEEEEcHHHHH
Q 017492 300 ALGASGIFIGRPVVY 314 (370)
Q Consensus 300 alGAd~V~igr~~l~ 314 (370)
..|||+|.+|++++.
T Consensus 190 ~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 190 DLGAEGVLLASGVVK 204 (219)
T ss_dssp TTTCCCEEESHHHHT
T ss_pred hCCCCEEEEcHHHhC
Confidence 899999999999985
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=60.74 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~ 290 (370)
+.++..|+..+ .||.+ .+.+.++++.+.++|+|.|.+.|. +.+.+.++++.++ .++++.++|||
T Consensus 183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI- 250 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL- 250 (284)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 35777777753 35655 667899999999999999999772 2233444433332 37999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+.+.++...|+|.+.+|+..
T Consensus 251 t~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp CTTTHHHHHHTTCSEEECGGGT
T ss_pred CHHHHHHHHhcCCCEEEECHHH
Confidence 5688999989999999999843
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0031 Score=57.28 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+++++.++- -+....+.+.++++.+.++|+|+|+.-+ .+.+.+..+++. .+|++. |+.|
T Consensus 72 a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~~---gi~~ip--Gv~T 136 (232)
T 4e38_A 72 AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQEI---GIDIVP--GVNN 136 (232)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHHH---TCEEEC--EECS
T ss_pred HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHc---CCCEEc--CCCC
Confidence 45779999998743 3444457899999999999999995421 133444444443 678877 6889
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
++++.+|+.+|||.|.+
T Consensus 137 ptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 137 PSTVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0053 Score=59.48 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCcEEEEecC-CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 214 WKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~-~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.+.++++++...+|+.+-... +.+.++.+.++|+|.|++....|. .....+.+.++++.+ ++||++ |.+.+.
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~ 156 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTE 156 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSH
T ss_pred HHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCH
Confidence 356788887778898877653 367899999999999988432221 112345677777766 788887 678999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 017492 293 TDVFKALALGASGIFIG 309 (370)
Q Consensus 293 ~dv~kalalGAd~V~ig 309 (370)
+++.+++.+|||+|.+|
T Consensus 157 e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 157 EATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCcCEEEEe
Confidence 99999999999999995
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=58.38 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=60.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+-++.+.++|+|+++++.+ ..+.+..+++.++ + .+++++||+- +.+..+++..|||.+.+||+++.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp HHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred HHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 4577888999999988542 2345667777664 4 6889999984 236777889999999999998753
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHH
Q 017492 316 LAAEGEKGVRRVLEMLREEFELAMAL 341 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~~~m~~ 341 (370)
+.....++.++++++.....
T Consensus 187 ------~dp~~a~~~i~~~i~~~~~~ 206 (215)
T 3ve9_A 187 ------ADPVRKLEEIVRSQEEVLSS 206 (215)
T ss_dssp ------SSHHHHHHHHHHHHHHHC--
T ss_pred ------CCHHHHHHHHHHHHHHHHHH
Confidence 11234556677777665443
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.065 Score=50.30 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=107.0
Q ss_pred hHHHHHHHHHcCCceeecCCC-------------CCCHHHHh-------ccCCCceEEEE---eecCChHHHHHHHHHHH
Q 017492 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVA-------STGPGIRFFQL---YVYKDRNVVAQLVRRAE 146 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~-------------~~~~eei~-------~~~~~~~~~Ql---y~~~d~~~~~~~l~ra~ 146 (370)
|...|+.+.++|...+..+.+ ..+++|+. +..+.|....+ | ..+.+...+.+++..
T Consensus 26 D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gy-g~~~~~~~~~v~~l~ 104 (295)
T 1xg4_A 26 NANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF-GSSAFNVARTVKSMI 104 (295)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCS-SSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCccc-CCCHHHHHHHHHHHH
Confidence 447899999999876653221 13555543 33344566665 4 236677778888888
Q ss_pred HcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-C
Q 017492 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-K 225 (370)
Q Consensus 147 ~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~ 225 (370)
++|+.++.|.=.+ .|++.. .+.+. . + .+.+...+.|+.+++.. +
T Consensus 105 ~aGa~gv~iEd~~---------------~~k~cg--H~~gk--------------~-L---~p~~~~~~~I~Aa~~a~~~ 149 (295)
T 1xg4_A 105 KAGAAGLHIEDQV---------------GAKRSG--HRPNK--------------A-I---VSKEEMVDRIRAAVDAKTD 149 (295)
T ss_dssp HHTCSEEEEECBC---------------SSCCCT--TSSSC--------------C-B---CCHHHHHHHHHHHHHHCSS
T ss_pred HcCCeEEEECCCC---------------CCcccC--CCCCC--------------c-c---CCHHHHHHHHHHHHHhccC
Confidence 8999998876221 011100 00000 0 0 00011223455555554 4
Q ss_pred CcEEEEecCC----------HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC--CCH-
Q 017492 226 LPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRG- 292 (370)
Q Consensus 226 ~Pv~vK~v~~----------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI--~~~- 292 (370)
.++.+..... .+.++.+.++|||.|.+ + ++++.+.+.++.+.+ ++|++++.-. .++
T Consensus 150 ~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~--e-------~~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~ 218 (295)
T 1xg4_A 150 PDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFP--E-------AITELAMYRQFADAV--QVPILANITEFGATPL 218 (295)
T ss_dssp TTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEE--T-------TCCSHHHHHHHHHHH--CSCBEEECCSSSSSCC
T ss_pred CCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEE--e-------CCCCHHHHHHHHHHc--CCCEEEEecccCCCCC
Confidence 5555555321 24578899999999998 3 245678888898888 7898765422 222
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~~ 315 (370)
-...+.-.+|.+.|.+|...+.+
T Consensus 219 ~~~~eL~~~G~~~v~~~~~~~~a 241 (295)
T 1xg4_A 219 FTTDELRSAHVAMALYPLSAFRA 241 (295)
T ss_dssp CCHHHHHHTTCSEEEESSHHHHH
T ss_pred CCHHHHHHcCCCEEEEChHHHHH
Confidence 23334446999999999988765
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.041 Score=49.48 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=79.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEec
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 287 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~G 287 (370)
+|+-++.++... ++++-+=.+.+.+.|..+.++|++.|... -||-.+++.+....+.++.+.+ +.+..|++.
T Consensus 89 T~eGl~A~~~L~~~GI~vn~TliFS~~QA~~aa~AGa~~iSpf--vgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A- 165 (220)
T 1l6w_A 89 TAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA- 165 (220)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-
Confidence 455444443332 89998889999999999999999988764 3443334444555555555433 335667765
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH--HHHHHHHHHH
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE--KGVRRVLEML 331 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~--~~v~~~l~~l 331 (370)
++|++.++.++..+|+|.+-+.-.++..+..++. .+++.+.+.+
T Consensus 166 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~~v~~F~~D~ 211 (220)
T 1l6w_A 166 SFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_dssp CCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCeEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 5999999999999999999999998887655442 3444443333
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0029 Score=57.70 Aligned_cols=69 Identities=9% Similarity=-0.111 Sum_probs=48.6
Q ss_pred cCccEEEE-ccCCcc-CCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHHH
Q 017492 245 AGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVVY 314 (370)
Q Consensus 245 aG~d~I~v-s~~gg~-~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kala--lGAd~V~igr~~l~ 314 (370)
.++|.|.+ +-+.|. +....+..++.+.++++... .+++|.++|||. .+++.++.. .|||.+.+||+++.
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~ 222 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS 222 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence 47998866 222221 11234445666777766653 258999999997 588999999 99999999998763
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.041 Score=53.37 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-+++++ +..+
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~~ 176 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGR-------------------------------------------------GEKL 176 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCC-------------------------------------------------CHHH
Confidence 467777788888889999999887542 0112
Q ss_pred cHHHHHHHHHhc-CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
..+.++.+|+.+ ++|+.+.. ..+.+++ +.+.+.|++.|.= . ..+..++.+.++++.+ ++||++
T Consensus 177 ~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPI~~ 246 (384)
T 2pgw_A 177 DLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQ-------P-TVSWSIPAMAHVREKV--GIPIVA 246 (384)
T ss_dssp HHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeC-------C-CChhhHHHHHHHHhhC--CCCEEE
Confidence 466788899888 57887764 2455554 5566789888751 0 1234677888888876 899999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++.+.+..++.+++..| +|.|++....
T Consensus 247 de~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 247 DQAAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 99999999999999987 8999997654
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0048 Score=55.83 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=34.3
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..+++|+..|||.+..|+..+...|+|++.+|++++.+
T Consensus 171 ~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 171 FPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence 35789999999999999998888999999999999863
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.024 Score=50.94 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.++++|++.+++.+-. .|
T Consensus 70 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt------------------------------------------------~d 101 (224)
T 2bdq_A 70 YNDLELRIMEEDILRAVELESDALVLGILT------------------------------------------------SN 101 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBC------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeEC------------------------------------------------CC
Confidence 555566788888899999999999874321 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec------CCHH-HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV------LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v------~~~~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
...+.+.++++.+.. ++|+.+=-. .++. ..+.+.+.|++.|-.|+ +..-......++.|.++.+...+++
T Consensus 102 g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG--~~~~~~a~~g~~~L~~Lv~~a~~ri 179 (224)
T 2bdq_A 102 NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHG--SSNGEPIIENIKHIKALVEYANNRI 179 (224)
T ss_dssp SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECS--CSSCCCGGGGHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCC--CCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 345677777777665 678776432 3333 35778999999998754 3321123445567777766555689
Q ss_pred cEEEecCCCCHHHHHHHH-HhCCCEEEEcH
Q 017492 282 PVFLDGGVRRGTDVFKAL-ALGASGIFIGR 310 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kal-alGAd~V~igr 310 (370)
.|++.|||+. +++.+.+ .+|++.+=..+
T Consensus 180 ~Im~GgGV~~-~Ni~~l~~~tGv~e~H~s~ 208 (224)
T 2bdq_A 180 EIMVGGGVTA-ENYQYICQETGVKQAHGTR 208 (224)
T ss_dssp EEEECSSCCT-TTHHHHHHHHTCCEEEETT
T ss_pred EEEeCCCCCH-HHHHHHHHhhCCCEEcccc
Confidence 9999999976 6676666 48998887543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=59.67 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=58.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+...+.|+|.+.+-.-.+. ..+.....+.+.++.+.+ .+|+.+.||||+-+|+.+.|.+||+-|.+|+..+
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a-~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGA-KDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHH-HCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred HHHHHHHHCCCCEEEEEecCcc-cccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence 5688888999999987532110 112345677888888876 8999999999999999999999999999999543
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0082 Score=54.28 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=34.3
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..+++|+..|||.++.|+..+...|+|++.+|++++.+
T Consensus 174 ~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 174 NPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence 35789999999999999998888999999999999863
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.057 Score=52.64 Aligned_cols=205 Identities=23% Similarity=0.268 Sum_probs=112.7
Q ss_pred CCCCccceeEcCeeec---CceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCCCHHHHhccCCCceEEEEee
Q 017492 56 VSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYV 131 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~---~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~~~eei~~~~~~~~~~Qly~ 131 (370)
...-|+.+++.|..+. .+++++|.+.. +.+.-..++++++++|+.++.. ++... .. +.-||
T Consensus 124 ~~~~~t~i~i~~~~iG~~~~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk~q~fkpr-------ts--~~~f~--- 188 (385)
T 3nvt_A 124 NKKEDTIVTVKGLPIGNGEPVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIRGGAFKPR-------TS--PYDFQ--- 188 (385)
T ss_dssp TCCSCCCEEETTEEETSSSCEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEECBSSCCC-------SS--TTSCC---
T ss_pred cCCCCcEEEECCEEECCCCeEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEEcccccCC-------CC--hHhhc---
Confidence 3344556666655543 36788888764 2333457999999999987763 33211 11 22233
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
.-..+....+.+.+++.|...+. ++-.| ..-+....+ ++ .+. + + ... .
T Consensus 189 gl~~egl~~L~~~~~~~Gl~~~t-e~~d~----~~~~~l~~~-vd-~lk------I---------g----s~~------~ 236 (385)
T 3nvt_A 189 GLGLEGLKILKRVSDEYGLGVIS-EIVTP----ADIEVALDY-VD-VIQ------I---------G----ARN------M 236 (385)
T ss_dssp CCTHHHHHHHHHHHHHHTCEEEE-ECCSG----GGHHHHTTT-CS-EEE------E---------C----GGG------T
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE-ecCCH----HHHHHHHhh-CC-EEE------E---------C----ccc------c
Confidence 12345555566666778877653 21111 111111111 00 000 0 0 000 0
Q ss_pred ccHHHHHHHHHhcCCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCC-c--cchHHHHHHHHHHccCCCc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDY-V--PATIMALEEVVKATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~-~--~~~~~~l~~i~~~~~~~ip 282 (370)
.+...++++. .++.||++|.. .++++. ..+.+.|.+-|++.-.|.+.... . ...+..++.+++.. .+|
T Consensus 237 ~n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~lp 313 (385)
T 3nvt_A 237 QNFELLKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HLP 313 (385)
T ss_dssp TCHHHHHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSC
T ss_pred cCHHHHHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CCC
Confidence 1345666664 47999999975 467664 34456788777775445443322 1 12445677777665 789
Q ss_pred EEEe----cCCCCHH--HHHHHHHhCCCEEEEcH
Q 017492 283 VFLD----GGVRRGT--DVFKALALGASGIFIGR 310 (370)
Q Consensus 283 vi~~----GGI~~~~--dv~kalalGAd~V~igr 310 (370)
|+.| +|-+.-. =...|+++||++++|=.
T Consensus 314 V~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 314 VMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp EEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred EEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 9887 3443332 24568899999999976
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.036 Score=49.92 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=76.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEec
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 287 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~G 287 (370)
+|+=++.++... ++++-+=.+.+.+.+..+.++|++.|... -||-.+++.+....+.++.+.+ +.+..|++.
T Consensus 96 T~eGl~A~~~L~~~GI~vN~TliFS~~Qa~~aa~AGa~~iSpF--VgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A- 172 (223)
T 1wx0_A 96 TEEGLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSPF--LGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA- 172 (223)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-
Confidence 555444444432 88998889999999999999999988763 3443344445556666555543 335566665
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
++|++.++.++..+|+|.+-+.-.++..+..++
T Consensus 173 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~ 205 (223)
T 1wx0_A 173 SIRHPRHVTEAALLGADIATMPHAVFKQLLKHP 205 (223)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECHHHHHHHTCCH
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCC
Confidence 699999999999999999999988888775543
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0063 Score=55.31 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=47.3
Q ss_pred CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 246 G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|...|.+-.. |. ....+.+.++++.. .++|+++.|||++++++.++.. |||+|.+|+++..
T Consensus 159 g~~~vY~e~s-G~-----~g~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 159 RLPVMYIEYS-GI-----YGDVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp CCSEEEEECT-TS-----CCCHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred CCCEEEEecC-CC-----cCCHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 7777777542 32 12467778777654 2789999999999999987666 9999999999875
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0068 Score=56.08 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.++.++++++.+++||++. |+.+++++..+.++|+|+|.|+.
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 4778999999889999998 46789999999999999999954
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.017 Score=55.61 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-++++++ +..+
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 174 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYP------------------------------------------------ALDQ 174 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHH
Confidence 4566666777788889999998875431 1123
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++|+.++.- .+.++ ++.+.+.|++.|.= ...+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPI~ 244 (359)
T 1mdl_A 175 DLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQ 244 (359)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEEC--------CSCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEC--------CCChhhHHHHHHHHHhC--CCCEE
Confidence 566788999987 688888853 45555 45567789988741 01234677888888766 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..++.+++..| +|.|++..
T Consensus 245 ~de~~~~~~~~~~~i~~~~~d~v~ik~ 271 (359)
T 1mdl_A 245 MGENWLGPEEMFKALSIGACRLAMPDA 271 (359)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence 999999999999999987 89999964
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0053 Score=55.41 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~igr~~l~ 314 (370)
.+-++.+.++|+|++++|.+ ..+.+..+++.++ + -++.++||+-. .+..+++..|||.+.+|||+..
T Consensus 125 ~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 45678889999999988642 1245666777664 4 57888999853 2566788899999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALS 342 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~ 342 (370)
+ +......+.++++++.....|
T Consensus 193 A------~dP~~aa~~i~~~i~~~~~~~ 214 (222)
T 4dbe_A 193 A------GNPLTALRTINKIIEDKVMKC 214 (222)
T ss_dssp S------SSHHHHHHHHHHHHHHHHHHC
T ss_pred C------CCHHHHHHHHHHHHHHHHHHh
Confidence 3 122345566677776655443
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.019 Score=55.45 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.+.++++.+.||+++-+.++++ +....
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~~ 177 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP------------------------------------------------DLKED 177 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------------------------------------------------SHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC------------------------------------------------CHHHH
Confidence 677777778888889999988775431 11125
Q ss_pred HHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ ++++.++.- .+.+++ +.+.+.|++.|.= ...+..++.+.++++.+ ++||++
T Consensus 178 ~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~~ 247 (371)
T 2ovl_A 178 VDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEE--------PTIPDDLVGNARIVRES--GHTIAG 247 (371)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHH--CSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEe
Confidence 66789999987 688988853 455554 4556778887741 01234577888888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++.+.+..|+.+++..| +|.|++..
T Consensus 248 dE~~~~~~~~~~~i~~~~~d~v~ik~ 273 (371)
T 2ovl_A 248 GENLHTLYDFHNAVRAGSLTLPEPDV 273 (371)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred CCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence 99999999999999987 89999864
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0067 Score=57.15 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+.|+++++.+++||+.|. +...++++.+.++|||.|..+ .+- ...+.+..+.+. ...+++++ ++++
T Consensus 66 ~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGAD~Id~s-~~~-------~~~~li~~i~~~-~~g~~vvv--~v~~ 134 (297)
T 4adt_A 66 DPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDES-EVL-------TMADEYNHINKH-KFKTPFVC--GCTN 134 (297)
T ss_dssp CHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTCSEEEEE-TTS-------CCSCSSCCCCGG-GCSSCEEE--EESS
T ss_pred CHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCCCEEEcC-CCC-------CHHHHHHHHHhc-CCCCeEEE--EeCC
Confidence 68899999999999999985 345889999999999999322 110 111122222221 12577777 5999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
.+++.+++.+||+.|.+.
T Consensus 135 ~~Ea~~a~~~Gad~I~v~ 152 (297)
T 4adt_A 135 LGEALRRISEGASMIRTK 152 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEC
Confidence 999999999999999886
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.046 Score=49.04 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCcEEE--E-e-------c-CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 215 KDVKWLQTITKLPILV--K-G-------V-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~v--K-~-------v-~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.++.+|+.+++|++- | . + .+.+.++.+.++|+|.|.+...-....+ +....+.+..+++.. ...+|
T Consensus 59 ~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~-~~~~v 136 (234)
T 1yxy_A 59 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKY-PNQLL 136 (234)
T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHC-TTCEE
T ss_pred HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhC-CCCeE
Confidence 4577888888889841 1 1 1 2457899999999999988543111000 113356777777765 24555
Q ss_pred EEecCCCCHHHHHHHHHhCCCEE
Q 017492 284 FLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V 306 (370)
+. ++++.+++.+++.+|||.|
T Consensus 137 ~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 137 MA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEE
T ss_pred EE--eCCCHHHHHHHHHcCCCEE
Confidence 54 6899999999999999999
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=52.47 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred cHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.++++++.++ +-+....+.+.++++.+.++|+|+|+..+ ...+.+ +.++.. .++++. |+.|
T Consensus 54 ~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~----------~d~~v~-~~~~~~--g~~~i~--G~~t 118 (214)
T 1wbh_A 54 AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLL-KAATEG--TIPLIP--GIST 118 (214)
T ss_dssp HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHH-HHHHHS--SSCEEE--EESS
T ss_pred HHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC----------CCHHHH-HHHHHh--CCCEEE--ecCC
Confidence 3557888888874 44444556788999999999999996521 122222 333333 577776 4999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
++++.+++.+|||.|.+
T Consensus 119 ~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 119 VSELMLGMDYGLKEFKF 135 (214)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999999
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0036 Score=64.15 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=56.9
Q ss_pred HHHHHHHHcCccEEEEccCCcc-CCC-CccchHHHHHHHHHHccCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 017492 237 EDARIAVQAGAAGIIVSNHGAR-QLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 303 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~-~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-----------~dv~kalalGA 303 (370)
+.|+.+.+.|+|.|.+.+-.+. ... ......+.+.++.+.+ .+||++.|||++. +++.+++.+||
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa 361 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 361 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence 4578888999999988764321 100 1223566777776655 8999999999998 44999999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|.|.+|+..+.
T Consensus 362 d~V~igt~~~~ 372 (555)
T 1jvn_A 362 DKVSIGTDAVY 372 (555)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECCHHhh
Confidence 99999998754
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=52.70 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.++++++.+ ++-+....+.+.++++.+.++|+|+|...+ .....+..+++ . .++++. |+.|
T Consensus 55 ~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~----------~d~~v~~~ar~-~--g~~~i~--Gv~t 119 (224)
T 1vhc_A 55 AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD-L--NFPITP--GVNN 119 (224)
T ss_dssp HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-T--TCCEEC--EECS
T ss_pred HHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC----------CCHHHHHHHHH-h--CCCEEe--ccCC
Confidence 355788888887 444444556788999999999999994321 12333444444 4 566665 4999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
++++.+++.+|||.|.+
T Consensus 120 ~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 120 PMAIEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999999
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.25 Score=48.05 Aligned_cols=124 Identities=13% Similarity=0.039 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC-
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR- 210 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~- 210 (370)
..+.+...+.++++.+.||+++-+.. +|+. .+.
T Consensus 143 ~~~~~~~~~~a~~~~~~Gf~~iKik~-spvG---------------------------------------------~~~~ 176 (401)
T 2hzg_A 143 GDTPQETLERARAARRDGFAAVKFGW-GPIG---------------------------------------------RGTV 176 (401)
T ss_dssp CSSHHHHHHHHHHHHHTTCSEEEEES-TTTT---------------------------------------------SSCH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEcC-CCCC---------------------------------------------CCHH
Confidence 35677777888888899999998864 3321 011
Q ss_pred CccHHHHHHHHHhc--CCcEEEEec--C--CHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH-HccC
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGV--L--TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQG 279 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v--~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~-~~~~ 279 (370)
....+.++.+|+.+ ++++.++.- . +.++ ++.+.+.|++.|.=- ..+..++.+.++++ .+
T Consensus 177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~~-- 246 (401)
T 2hzg_A 177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEEP--------FDAGALAAHAALAGRGA-- 246 (401)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEECC--------SCTTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCccCHHHHHHHHhhCC--
Confidence 23567889999987 688988853 5 6666 456778899887410 12335777787776 55
Q ss_pred CCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 280 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++||++++.+.+..++.+++..| +|.|++--.
T Consensus 247 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 279 (401)
T 2hzg_A 247 RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCG 279 (401)
T ss_dssp SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence 79999999999999999999987 899999654
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.017 Score=53.69 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++||++.. +.++++++.+...|+|+++|+.
T Consensus 196 ~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 196 VHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 34679999999999999975 5789999999999999999953
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.027 Score=54.57 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++++|+.-.+++.+-.. ...+.++.+.++|+|.|++....|. .....+.+.++++.. .++||++ |.+.+
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~-p~v~Vi~-G~v~t 159 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAY-PHLEIIG-GNVAT 159 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHC-TTCEEEE-EEECS
T ss_pred HHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhc-CCCceEe-eeeCC
Confidence 4566666654455554432 3467899999999999998543332 122345677777765 3677776 67899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
.+++.++..+|||+|.+|
T Consensus 160 ~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 160 AEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999995
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.078 Score=51.28 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.++++..+ + ..+...
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~---------~---------------------------------~~~~~~ 185 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS---------W---------------------------------APDVKM 185 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST---------T---------------------------------CCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccc---------c---------------------------------ccchHH
Confidence 4677777778888889999999887653210 0 001223
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++++.+..- .+.+++ +.+.+.|++.|.=- ..+..++.+.++++.+ ++||+
T Consensus 186 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPIa 255 (382)
T 1rvk_A 186 DLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEEP--------MDEQSLSSYKWLSDNL--DIPVV 255 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 567899999987 688888753 456554 55667788877410 1233577788888876 79999
Q ss_pred EecCCCC-HHHHHHHHHhC-CCEEEEcHHH
Q 017492 285 LDGGVRR-GTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~-~~dv~kalalG-Ad~V~igr~~ 312 (370)
+++.+.+ ..++.+++..| +|.|++--..
T Consensus 256 ~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~ 285 (382)
T 1rvk_A 256 GPESAAGKHWHRAEWIKAGACDILRTGVND 285 (382)
T ss_dssp ECSSCSSHHHHHHHHHHTTCCSEEEECHHH
T ss_pred EeCCccCcHHHHHHHHHcCCCCEEeeCchh
Confidence 9999999 99999999987 8999996543
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.004 Score=54.57 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=84.3
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
..|-++. +-..+.+.+++++++| +-+.|++|... |+. . ...+-+++
T Consensus 34 ~ifll~g--~I~~L~~iv~~ik~~g-K~vivh~DlI~----------GLs------~---------------d~~ai~fL 79 (188)
T 1vkf_A 34 VVFLLKS--DILNLKFHLKILKDRG-KTVFVDMDFVN----------GLG------E---------------GEEAILFV 79 (188)
T ss_dssp EEEECCE--ETTTHHHHHHHHHHTT-CEEEEEGGGEE----------TCC------S---------------SHHHHHHH
T ss_pred EEEEEeC--cHHHHHHHHHHHHHCC-CeEEEecCccc----------ccC------C---------------CHHHHHHH
Confidence 3444443 3344788889998886 56677877421 111 0 00112333
Q ss_pred hhcCCCCc----cHHHHHHHHHhcCCcEEEEecC----CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH
Q 017492 205 AGQIDRSL----SWKDVKWLQTITKLPILVKGVL----TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (370)
Q Consensus 205 ~~~~d~~~----~~~~i~~ir~~~~~Pv~vK~v~----~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (370)
...+++. ....++..++ .++..+-+.-. +. ..++.+.+...|.+.+- -++-....+.++
T Consensus 80 -~~~~pdGIIsTk~~~i~~Akk-~GL~tIqR~FliDs~al~~~~~~I~~~kPD~iEiL--------Pg~v~p~~I~~v-- 147 (188)
T 1vkf_A 80 -KKAGADGIITIKPKNYVVAKK-NGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVL--------PGAVAPKVARKI-- 147 (188)
T ss_dssp -HHHTCSEEEESCHHHHHHHHH-TTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEE--------SGGGHHHHHTTS--
T ss_pred -HhcCCCEEEcCcHHHHHHHHH-cCCEEeeEEEEEEeHHHhhhhhhccccCCCeEeec--------CCCchHHHHHHh--
Confidence 2223332 2234555554 36666555531 22 23455667888888772 111112334333
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 276 ~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.++|||+.|+|++.+|+.+ +..||++|..++.-||.
T Consensus 148 ---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 148 ---PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp ---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred ---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 4899999999999999999 99999999999988884
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.012 Score=53.12 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=79.3
Q ss_pred EEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhc
Q 017492 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (370)
Q Consensus 128 Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (370)
-+....+.+...+.++.+.+.|++.+.++...+
T Consensus 30 ~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~----------------------------------------------- 62 (225)
T 1mxs_A 30 PVITIAREEDILPLADALAAGGIRTLEVTLRSQ----------------------------------------------- 62 (225)
T ss_dssp EEECCSCGGGHHHHHHHHHHTTCCEEEEESSST-----------------------------------------------
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCc-----------------------------------------------
Confidence 333345666667788888888888887763211
Q ss_pred CCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 208 ~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
...+.++++++.+ ++-+....+.+.++++.+.++|+|+|+.. + .... +.+.++.. .++++.
T Consensus 63 ----~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p---~-------~d~~-v~~~~~~~--g~~~i~- 124 (225)
T 1mxs_A 63 ----HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP---G-------ITED-ILEAGVDS--EIPLLP- 124 (225)
T ss_dssp ----HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS---S-------CCHH-HHHHHHHC--SSCEEC-
T ss_pred ----cHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeC---C-------CCHH-HHHHHHHh--CCCEEE-
Confidence 1234577777777 45555566678899999999999999532 1 1222 22333334 567765
Q ss_pred cCCCCHHHHHHHHHhCCCEEEE
Q 017492 287 GGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~i 308 (370)
|+.|++++.+++.+|||.|.+
T Consensus 125 -G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 125 -GISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp -EECSHHHHHHHHTTTCCEEEE
T ss_pred -eeCCHHHHHHHHHCCCCEEEE
Confidence 499999999999999999999
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.25 Score=46.45 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q 017492 234 LTAEDARIAVQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIG 309 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~ig 309 (370)
.+|++|+...+.|+|.+-++. ||-+......-.++.|.+|.+.++.++|+..=||=..+ +++.+++.+|..-|-++
T Consensus 172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~ 251 (306)
T 3pm6_A 172 TTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVN 251 (306)
T ss_dssp CCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 468999888899999998863 55442112223678899999887557999998865444 56888999999999999
Q ss_pred HHHHHHHHh--------cCH-HHHHHHHHHHHHHHHHHHHHcCCCCh
Q 017492 310 RPVVYSLAA--------EGE-KGVRRVLEMLREEFELAMALSGCRSL 347 (370)
Q Consensus 310 r~~l~~~~~--------~G~-~~v~~~l~~l~~el~~~m~~~G~~~l 347 (370)
+-+..+... ..+ .-+....+.+++.++..|..+|...-
T Consensus 252 Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gk 298 (306)
T 3pm6_A 252 RAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGK 298 (306)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTG
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 976543211 011 12233446677788888999987653
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.046 Score=50.11 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=85.5
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.++++|++.+++.+-. .|
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt------------------------------------------------~d 98 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLD------------------------------------------------VD 98 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBC------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeEC------------------------------------------------CC
Confidence 544456777888889999999999874321 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. +.|+.+=-. .++.. .+.+.+.|++.|-.|+. . ......+..|.++.+... ++.|
T Consensus 99 g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~--~--~~a~~g~~~L~~Lv~~a~-~i~I 173 (256)
T 1twd_A 99 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQ--K--SDALQGLSKIMELIAHRD-APII 173 (256)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTT--S--SSTTTTHHHHHHHHTSSS-CCEE
T ss_pred CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC--C--CCHHHHHHHHHHHHHhhC-CcEE
Confidence 345677777777665 677766432 34544 57788999999987543 2 123334556666665444 8899
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++.|||+. +++.+.+..|++.+=.+
T Consensus 174 m~GgGv~~-~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 174 MAGAGVRA-ENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred EecCCcCH-HHHHHHHHcCCCeEeEC
Confidence 99999975 66666668899887754
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.037 Score=53.85 Aligned_cols=120 Identities=16% Similarity=0.084 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-+++++ .+..+
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~------------------------------------------------~~~~~ 194 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPV------------------------------------------------ADDGP 194 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGG------------------------------------------------CTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCC------------------------------------------------CChHH
Confidence 467777777888888999998876431 02345
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.+.++.+|+.+ ++|+.++.- .+.+++ +.+.+.|++.|.= ...+..++.+.++++.+ ++||+
T Consensus 195 -~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~ 263 (388)
T 2nql_A 195 -AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEA--------PVWTEDIAGLEKVSKNT--DVPIA 263 (388)
T ss_dssp -HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTSC--CSCEE
T ss_pred -HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 77889999987 688888742 455554 4556778887731 01233567778887765 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+++.+.+..++.+++..| +|.|++-..
T Consensus 264 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 291 (388)
T 2nql_A 264 VGEEWRTHWDMRARIERCRIAIVQPEMG 291 (388)
T ss_dssp ECTTCCSHHHHHHHHTTSCCSEECCCHH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEecCC
Confidence 999999999999999987 899999544
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.087 Score=51.26 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-|.+... ...+
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~ 179 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLD------------------------------------------------SLSI 179 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC------------------------------------------------hHHH
Confidence 4677777788888889999887653200 0123
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++||.++.- .+.+++ +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 180 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 249 (391)
T 2qgy_A 180 SIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEEP--------VDGENISLLTEIKNTF--NMKVV 249 (391)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEECS--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeCC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 567889999987 689998853 456654 45566788877410 1134577888888876 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..++.+++..| +|.|++-
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 250 TGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 999999999999999988 8999984
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.037 Score=50.81 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.|+...++|+++|.|-.-.+ .-....+.|..+++.+ ++||+.-++|.+..++..++++|||+|.++...+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~----~f~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecchh----hhccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 4668899999999999843211 1112456777787776 8999999999999999999999999999998765
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.042 Score=50.43 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++++.+|+.+++||+-|.- .+......+..+|||+|.+...- + ...++..+.+..+.+ .+.++++ +++
T Consensus 89 s~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lvE--v~~ 159 (251)
T 1i4n_A 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---L--TAEQIKEIYEAAEEL--GMDSLVE--VHS 159 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 678999999999999999963 44445667999999999885421 0 112333333333333 5556664 789
Q ss_pred HHHHHHHHHh-CCCEEEEcH
Q 017492 292 GTDVFKALAL-GASGIFIGR 310 (370)
Q Consensus 292 ~~dv~kalal-GAd~V~igr 310 (370)
.+++..++.+ |++.|++-.
T Consensus 160 ~eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 160 REDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 9999999999 999998865
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.55 Score=43.75 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.+|++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|.+.+ .+|+..=||=..+ +++.+++.+|..-|-+
T Consensus 159 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi 235 (288)
T 3q94_A 159 ADPAECKHLVEATGIDCLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINV 235 (288)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCBSSCCSS-SCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEEEcCcccCCcCC-CCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEE
Confidence 5688887765 69999999873 554421 1123678899999988 6999988865443 6688899999999999
Q ss_pred cHHHHHHHHh--------c-C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA--------E-G----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~--------~-G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++-+.++... . . ..-+....+.+++.++..|..+|+.
T Consensus 236 ~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 285 (288)
T 3q94_A 236 NTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 285 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654221 0 0 1123333456677777788887764
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.067 Score=51.77 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-+++.+ +..+
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~~ 174 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA-------------------------------------------------DWQS 174 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC-------------------------------------------------CHHH
Confidence 467777788888889999999876542 0112
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ +.|+.++.- .+.+++ +.+.+.|+ .|. +. -+ .++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~P--~~-~~~~~~~l~~~~--~iPI~ 241 (379)
T 2rdx_A 175 DIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------QP--CR-SYEECQQVRRVA--DQPMK 241 (379)
T ss_dssp HHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------CC--cC-CHHHHHHHHhhC--CCCEE
Confidence 567789999887 588888743 466665 33445676 552 11 11 677788887765 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..++.+++..| +|.|++--
T Consensus 242 ~de~i~~~~~~~~~i~~~~~d~v~ik~ 268 (379)
T 2rdx_A 242 LDECVTGLHMAQRIVADRGAEICCLKI 268 (379)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89999954
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.13 Score=49.55 Aligned_cols=121 Identities=7% Similarity=0.023 Sum_probs=88.0
Q ss_pred CChHHHHHHHHHHHH-cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
.+.+...+.++++.+ .||+++-++++++ +..
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~------------------------------------------------~~~ 172 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGAR------------------------------------------------TPA 172 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSS------------------------------------------------CHH
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCC------------------------------------------------ChH
Confidence 466777777888888 9999988765431 011
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ ++++.+..- .+.++ ++.+.+.|++.|.= . ..+..++.+.++++.+ ++||
T Consensus 173 ~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~ipI 242 (370)
T 1nu5_A 173 QDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQ-------P-VPRANFGALRRLTEQN--GVAI 242 (370)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEEC-------C-SCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEeC-------C-CCcccHHHHHHHHHhC--CCCE
Confidence 2466788888876 478877742 45555 45567789887741 0 1234577888888876 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++++.+.+..|+.+++..| +|.|++--.
T Consensus 243 a~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (370)
T 1nu5_A 243 LADESLSSLSSAFELARDHAVDAFSLKLC 271 (370)
T ss_dssp EESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence 9999999999999999987 899999653
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.08 Score=51.54 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...+.++++.+.||+++-+.++.+ +..+.
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 193 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQP------------------------------------------------DGALD 193 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHHH
Confidence 677777778888889999887764310 11235
Q ss_pred HHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ +++|.+.. ..+.+++ +.+.+.|++.|.- ...+..++.+.++++.+ ++||++
T Consensus 194 ~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~ 263 (393)
T 2og9_A 194 IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEE--------PLDAYDHEGHAALALQF--DTPIAT 263 (393)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhC--CCCEEe
Confidence 67889999987 58888874 2466664 4455678887741 01223577788888876 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++.+.+..++.+++..| +|.|++--.
T Consensus 264 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 290 (393)
T 2og9_A 264 GEMLTSAAEHGDLIRHRAADYLMPDAP 290 (393)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred CCCcCCHHHHHHHHHCCCCCEEeeCcc
Confidence 99999999999999988 899988643
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0081 Score=55.48 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+...+.|++.+.+-.-.+ ...+.+.++.+.+ .+||...|||++- |+.+.+ +||+-|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 3568889999999998743111 4567788888876 7999999999986 999999 99999999998763
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.94 Score=42.15 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.+|++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|.+.+ .+|+..=||=..+ +++.+++.+|..-|-+
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi 231 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCCSS-CCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEeecCccccCcCC-CCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEEEE
Confidence 5788887766 79999999873 554421 1122567899999987 7999998854433 6688899999999999
Q ss_pred cHHHHHHHHh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++-+.++... .. + .-+....+.+++.++..|..+|+.
T Consensus 232 ~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 281 (286)
T 1gvf_A 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554221 01 1 113333456777778888888764
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.37 Score=44.90 Aligned_cols=178 Identities=14% Similarity=0.162 Sum_probs=104.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|.++-|+ -.+-.+.+.-..+++-..+.|+...+ + +..+.+.||-. +.. . -+.+...- ..+-+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4445565 33333444444667767778876544 2 33456666532 121 2 35566653 3455667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|++.|++++.+. .|..- . | + .+-..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 119 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIV--SPYYN----------K-P---T-----------------------------QEGIYQHFK 119 (292)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788899999999999875 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.|.+.+++||++=.+ .+++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+ +|
T Consensus 120 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~----------gd~~~~~~~~~~~~~~f~v~-~G-- 186 (292)
T 2vc6_A 120 AIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT----------GNLLRPSLERMACGEDFNLL-TG-- 186 (292)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHSCTTSEEE-ES--
T ss_pred HHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCC----------CCHHHHHHHHHHcCCCEEEE-EC--
Confidence 677778999998543 57787777765 3 355555432 12334555555554466664 45
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
+...++.++++||+++..+.+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~ 207 (292)
T 2vc6_A 187 -EDGTALGYMAHGGHGCISVTA 207 (292)
T ss_dssp -CGGGHHHHHHTTCCEEEESGG
T ss_pred -chHHHHHHHHcCCCEEEecHH
Confidence 234577889999999998874
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.16 Score=44.51 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=38.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~ 255 (370)
..+.++++++.++.||++.| +.+.|+++.+.++||++|+.|+.
T Consensus 138 ~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 138 IPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp CHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred hHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 34689999999999999987 58999999999999999999874
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.039 Score=51.13 Aligned_cols=42 Identities=29% Similarity=0.308 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++||.+.+ +.++++++.+.++|+|+++|++
T Consensus 194 ~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 194 IENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 45679999999999999986 4679999999999999999953
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.053 Score=52.37 Aligned_cols=68 Identities=21% Similarity=0.087 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.++.+.++|+|.|++....|. ....++.+..+++.. .++||++ |++.+.+++.++..+|||+|.+|
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~-~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLL-GSRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHH-TTCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhc-CCCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 45688999999999988532222 122356677777765 3688887 67999999999999999999985
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.05 Score=48.33 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=77.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+...+.++++.+.|++.+.++..+|
T Consensus 21 ~~~~~~~~~~~~~l~~gGv~~iel~~k~~--------------------------------------------------- 49 (207)
T 2yw3_A 21 VRGGEDLLGLARVLEEEGVGALEITLRTE--------------------------------------------------- 49 (207)
T ss_dssp CCSCCCHHHHHHHHHHTTCCEEEEECSST---------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCh---------------------------------------------------
Confidence 44555566778888888999888764221
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
...+.++.+++ -++.+....+.+.++++.+.++|+|+++..+ .....+..+++ . .+|++. |+.|
T Consensus 50 ~~~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~----------~d~~v~~~~~~-~--g~~~i~--G~~t 113 (207)
T 2yw3_A 50 KGLEALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG----------LLEEVAALAQA-R--GVPYLP--GVLT 113 (207)
T ss_dssp HHHHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS----------CCHHHHHHHHH-H--TCCEEE--EECS
T ss_pred HHHHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC----------CCHHHHHHHHH-h--CCCEEe--cCCC
Confidence 02345677777 5666666667788999999999999996421 12233333333 3 567665 4899
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
.+++.+++.+|||.|.+
T Consensus 114 ~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 114 PTEVERALALGLSALKF 130 (207)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999998
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.11 Score=50.78 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...+.++++.+.||+++-+.++.+ +....
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~d 206 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQP------------------------------------------------NCAED 206 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCC------------------------------------------------CHHHH
Confidence 667777777888889999887764310 11235
Q ss_pred HHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.- ...+..++.+.++++.+ ++||++
T Consensus 207 ~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 276 (398)
T 2pp0_A 207 IRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEE--------PLDAYDIEGHAQLAAAL--DTPIAT 276 (398)
T ss_dssp HHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeC--------CCChhhHHHHHHHHhhC--CCCEEe
Confidence 67789999886 58888874 3456654 4455678877641 01223577788888876 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++.+.+..++.+++..| +|.|++--
T Consensus 277 dE~~~~~~~~~~~i~~~~~d~v~ik~ 302 (398)
T 2pp0_A 277 GEMLTSFREHEQLILGNASDFVQPDA 302 (398)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999988 89998854
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.11 Score=50.67 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=88.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.|++++-+.+++ ++.
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKvG~-------------------------------------------------~~~ 179 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKVGR-------------------------------------------------APR 179 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCS-------------------------------------------------CHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeeccCC-------------------------------------------------CHH
Confidence 4567888888888888999998876542 011
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHH-HHccCCCc
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~-~~~~~~ip 282 (370)
.+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.= ...+..++.+.+++ +.. .+|
T Consensus 180 ~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~--~iP 249 (389)
T 3ozy_A 180 KDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEE--------PLSIDDIEGHRILRAQGT--PVR 249 (389)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEES--------CSCTTCHHHHHHHHTTCC--SSE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcCC--CCC
Confidence 2566788999987 578888753 455554 5567789888841 01123567777777 655 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 283 VFLDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
|++++.+.+..|+.+++..| +|.|++--
T Consensus 250 Ia~dE~i~~~~~~~~~i~~~~~d~v~ik~ 278 (389)
T 3ozy_A 250 IATGENLYTRNAFNDYIRNDAIDVLQADA 278 (389)
T ss_dssp EEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999999987 89998854
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.53 E-value=1.3 Score=42.95 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=103.1
Q ss_pred eEcCeee---cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEE-----------E
Q 017492 64 TVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ-----------L 129 (370)
Q Consensus 64 ~l~g~~l---~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Q-----------l 129 (370)
++.++.+ ..|++||=+|..-..+.+--..++++|+++|+.++=.. ....+.+.... . .-|| +
T Consensus 17 ~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ--~~k~~tl~s~~-~-~~fq~~~~~~~~~ye~ 92 (385)
T 1vli_A 17 QIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQ--MFQADRMYQKD-P-GLYKTAAGKDVSIFSL 92 (385)
T ss_dssp EETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEC--CBCGGGGTSCC-C----------CCCHHHH
T ss_pred eECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeee--eeccCcccCcc-h-hhhccCCCCCccHHHH
Confidence 3444444 35899998765422112222478999999998865432 12233321100 0 0122 1
Q ss_pred ee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhc
Q 017492 130 YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (370)
Q Consensus 130 y~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (370)
|. .-..+....+.+.+++.|...+. +|. ..+.-|+-..+.+|- +..
T Consensus 93 ~~~~~l~~e~~~~L~~~~~~~Gi~~~s----tpf-D~~svd~l~~~~vd~-~KI-------------------------- 140 (385)
T 1vli_A 93 VQSMEMPAEWILPLLDYCREKQVIFLS----TVC-DEGSADLLQSTSPSA-FKI-------------------------- 140 (385)
T ss_dssp GGGBSSCGGGHHHHHHHHHHTTCEEEC----BCC-SHHHHHHHHTTCCSC-EEE--------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHcCCcEEE----ccC-CHHHHHHHHhcCCCE-EEE--------------------------
Confidence 11 12567777788888899976542 222 222223222222111 000
Q ss_pred CCCC-ccHHHHHHHHHhcCCcEEEEec-CCHHHHH----HHHHcCccEEEEccCCccCCCCccc--hHHHHHHHHHHccC
Q 017492 208 IDRS-LSWKDVKWLQTITKLPILVKGV-LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQG 279 (370)
Q Consensus 208 ~d~~-~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~ 279 (370)
...+ .++..|+++.+ +++||++|.. .+.++.. .+.+.|.+-|++- |+-+.....+. .+..++.+++..+
T Consensus 141 gS~~~~N~pLL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLl-hc~s~YPtp~~~~nL~aI~~Lk~~f~- 217 (385)
T 1vli_A 141 ASYEINHLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIM-HCVAKYPAPPEYSNLSVIPMLAAAFP- 217 (385)
T ss_dssp CGGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEE-EECSSSSCCGGGCCTTHHHHHHHHST-
T ss_pred CcccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-eccCCCCCChhhcCHHHHHHHHHHcC-
Confidence 0011 15667888765 6999999975 4666643 3445787445442 33222212111 3345666666531
Q ss_pred CCcEEEecCCCC--HHHHHHHHHhCCCEE
Q 017492 280 RIPVFLDGGVRR--GTDVFKALALGASGI 306 (370)
Q Consensus 280 ~ipvi~~GGI~~--~~dv~kalalGAd~V 306 (370)
.+||..++ =.. ..-...|+++||+.+
T Consensus 218 ~lpVG~Sd-Ht~G~~~~~~AAvAlGA~iI 245 (385)
T 1vli_A 218 EAVIGFSD-HSEHPTEAPCAAVRLGAKLI 245 (385)
T ss_dssp TSEEEEEE-CCSSSSHHHHHHHHTTCSEE
T ss_pred CCCEEeCC-CCCCchHHHHHHHHcCCCEE
Confidence 58886554 222 244456789999933
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.033 Score=55.87 Aligned_cols=252 Identities=14% Similarity=0.150 Sum_probs=133.4
Q ss_pred hhcccceeeeccc-CCCCCCccceeEcC-eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~g-~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
..||++.|+|... .+..++|+++.|-. ..+..||+.+||...+ +..++.+..+.|....+.. ..+.++..
T Consensus 12 ~~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt------~~eLa~av~~~Gg~G~i~~--~~~~e~~~ 83 (491)
T 1zfj_A 12 YTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHK--NMSITEQA 83 (491)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECC--SSCHHHHH
T ss_pred CChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhcc------HHHHHHHHHHcCCceEEeC--CCCHHHHH
Confidence 4799999999765 34478899988753 6788999999998543 4467778888876666642 24554432
Q ss_pred c-------cCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEec--C--CCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 119 S-------TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV--D--TPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 119 ~-------~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itv--d--~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
+ ... ...-++..........+.++...+.+...+.|.= + ..+.--..+|+..... + ......+-..
T Consensus 84 ~~i~~v~~~~~-im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~-~-~~~v~~im~~ 160 (491)
T 1zfj_A 84 EEVRKVKRSEN-GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD-Y-NAPISEHMTS 160 (491)
T ss_dssp HHHHHHHHHTT-TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC-S-SSBTTTSCCC
T ss_pred HHHHHHhhHHh-cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhcc-C-CCcHHHHcCC
Confidence 1 111 0000111111223345666777777887776532 0 0000012233331100 0 0000000000
Q ss_pred -ccCccc-cccchhhHHHhhh-------cCC------CCccHHH-HHHHHH-----hcCCcEEEEecC-----CHHHHHH
Q 017492 188 -DLGKMD-EANDSGLAAYVAG-------QID------RSLSWKD-VKWLQT-----ITKLPILVKGVL-----TAEDARI 241 (370)
Q Consensus 188 -~~~~~~-~~~~~~~~~~~~~-------~~d------~~~~~~~-i~~ir~-----~~~~Pv~vK~v~-----~~~~a~~ 241 (370)
...... ..........+.. ..| .-.+.++ ++.+.+ ....++.+.... ..+.++.
T Consensus 161 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~ 240 (491)
T 1zfj_A 161 EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEA 240 (491)
T ss_dssp SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHH
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHH
Confidence 000000 0000000000000 001 1123444 444442 011122222221 3588999
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++|+|.|++...+|. ....++.+.++++.+ ..+|++ .|++.+.+++.+++.+|||+|.+|
T Consensus 241 l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~-p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 241 LFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHcCCCeEEEeeecCc----chhHHHHHHHHHHHC-CCCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 99999999999764432 123556777777766 378998 899999999999999999999888
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.24 Score=47.54 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.++++ +...
T Consensus 139 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 170 (366)
T 1tkk_A 139 NSPEEMAADAENYLKQGFQTLKIKVGKD------------------------------------------------DIAT 170 (366)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCC------------------------------------------------CHHH
Confidence 4666677777788888999988765421 1122
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
+.+.++.+|+.+ ++++.+..- .+.+++ +.+.+ .|++.|. +. ..+..++.+.++++.. ++|
T Consensus 171 d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ip 240 (366)
T 1tkk_A 171 DIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDAT--DTP 240 (366)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhC--CCC
Confidence 566788888887 578887742 455554 55667 6777663 11 1234677888888776 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 283 VFLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
|++++.+.+..|+.+++..| +|.|++--.
T Consensus 241 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 270 (366)
T 1tkk_A 241 IMADESVFTPRQAFEVLQTRSADLINIKLM 270 (366)
T ss_dssp EEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence 99999999999999999987 899999653
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.27 Score=43.50 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccC----Ccc--CCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~----gg~--~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+++ ++|++ |-+ .+.++...+.+..+|++.+... ||+ .+||. .+..+. ....|++
T Consensus 87 ~~~~~~~l~~--~~~vi-ka~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~-----~l~~~~---~~~~p~~ 155 (205)
T 1nsj_A 87 PIELCRKIAE--RILVI-KAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWS-----LILPYR---DRFRYLV 155 (205)
T ss_dssp CHHHHHHHHT--TSEEE-EEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGG-----GTGGGG---GGSSCEE
T ss_pred CHHHHHHHhc--CCCEE-EEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHH-----HHHhhh---cCCCcEE
Confidence 4455666653 46776 543 4555555555555999999764 444 34443 333221 1267999
Q ss_pred EecCCCCHHHHHHHHH-hCCCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALA-LGASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kala-lGAd~V~igr~~ 312 (370)
..||+ +++++.+++. .++.+|=+.|.+
T Consensus 156 LAGGL-~peNV~~ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 156 LSGGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp EESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred EECCC-CHHHHHHHHHhcCCCEEEECCce
Confidence 99999 5689989887 699999999865
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.084 Score=48.98 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=56.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+...++||++|.|-.-.+. . ....+.|..+++.+ ++||+.-..|.+..++.++.++|||+|.++...+
T Consensus 83 ~~A~~y~~~GA~~IsVltd~~~---f-~Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 83 ALAKAYEEGGAACLSVLTDTPS---F-QGAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCSTT---T-CCCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHCCCCEEEEeccccc---c-CCCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 5688889999999988542211 0 12456778888776 8999999999999999999999999999997654
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.41 E-value=0.021 Score=51.57 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~~ 316 (370)
-++.+.++|+++++++.+ ..+.+.++++..+.+.++ .++||+-. .+. +++..|||.+.+||+++.+
T Consensus 142 ~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a- 208 (228)
T 3m47_A 142 IARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA- 208 (228)
T ss_dssp HHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS-
T ss_pred HHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC-
Confidence 466788999999987531 234566777766544655 78888643 367 8889999999999997532
Q ss_pred HhcCHHHHHHHHHHHHHHHHH
Q 017492 317 AAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~~ 337 (370)
.. ....++.++++++.
T Consensus 209 --~d---p~~a~~~~~~~~~~ 224 (228)
T 3m47_A 209 --DN---PAAAAAGAIESIKD 224 (228)
T ss_dssp --SC---HHHHHHHHHHHC--
T ss_pred --CC---HHHHHHHHHHHHHH
Confidence 11 22345555555543
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.33 E-value=1.9 Score=40.52 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=107.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ + ++.+.+.+|.. +. .+ -+.+...- ..+-+.
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 45666777533333444444677777778886544 2 33456666532 21 12 35666643 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..- . | ..+-..+..
T Consensus 108 ai~la~~A~~~Gadavlv~--~P~y~----------~-~--------------------------------s~~~l~~~f 142 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVL--PISYW----------K-L--------------------------------NEAEVFQHY 142 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCSS----------C-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC----------C-C--------------------------------CHHHHHHHH
Confidence 7788999999999999874 34320 0 0 000123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHH-HHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIA-VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a-~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.|.+.+++||++=.+ .+++...++ .+. .+-+|.-+. ..+..+.++.+..+++..|+. |.
T Consensus 143 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~-G~ 211 (315)
T 3na8_A 143 RAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKEST----------GDIQRMHKLRLLGEGRVPFYN-GC 211 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEECS----------SCHHHHHHHHHHTTTCSCEEE-CC
T ss_pred HHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECCC----------CCHHHHHHHHHHcCCCEEEEe-Cc
Confidence 7777778999998764 567777766 553 244444432 134455566666555666665 32
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++++|++++..+.+
T Consensus 212 ---D~~~l~~l~~G~~G~is~~a 231 (315)
T 3na8_A 212 ---NPLALEAFVAGAKGWCSAAP 231 (315)
T ss_dssp ---GGGHHHHHHHTCSEEEESGG
T ss_pred ---hHHHHHHHHCCCCEEEechh
Confidence 23467889999999998874
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.12 Score=51.24 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=65.2
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++|+.+|+.+++||+-|.- .++.....+..+|||+|-+...- ++ ...+..+.+....+ .+.++++ +++
T Consensus 96 s~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a~~l--gm~~LvE--vh~ 166 (452)
T 1pii_A 96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---LD--DDQYRQLAAVAHSL--EMGVLTE--VSN 166 (452)
T ss_dssp CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHHHHT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 677899999999999999973 55556777999999999885421 11 12333333333334 5666665 899
Q ss_pred HHHHHHHHHhCCCEEEEcH
Q 017492 292 GTDVFKALALGASGIFIGR 310 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr 310 (370)
.+++..|+.+||+.|++-.
T Consensus 167 ~eE~~~A~~lga~iIGinn 185 (452)
T 1pii_A 167 EEEQERAIALGAKVVGINN 185 (452)
T ss_dssp HHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHCCCCEEEEeC
Confidence 9999999999999998864
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.15 Score=49.70 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.++. +...
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-------------------------------------------------~~~~ 174 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-------------------------------------------------PLKA 174 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-------------------------------------------------CHHH
Confidence 467777777888888899988775431 1112
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.= ...+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa 244 (397)
T 2qde_A 175 DIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQ--------PLPAWDLDGMARLRGKV--ATPIY 244 (397)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 466788899886 58888774 2456654 4455678887641 01223567777777665 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..++.+++..| +|.|++--
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 271 (397)
T 2qde_A 245 ADESAQELHDLLAIINKGAADGLMIKT 271 (397)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89999954
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.27 Score=47.15 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-++++. +...
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~~ 170 (369)
T 2p8b_A 140 ADPENMAEEAASMIQKGYQSFKMKVGT-------------------------------------------------NVKE 170 (369)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCS-------------------------------------------------CHHH
T ss_pred CChHHHHHHHHHHHHcCcCEEEEEeCC-------------------------------------------------CHHH
Confidence 467777777888888999998876431 1122
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHHH-HH----HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDAR-IA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~-~a----~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..+.++.+|+.+ ++|+.+..- .+.+++. .. .+.|++.|. +. ..+..++.+.++++.. ++||
T Consensus 171 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI 240 (369)
T 2p8b_A 171 DVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE-------QP-VIADDIDAMAHIRSKT--DLPL 240 (369)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE-------CC-BCTTCHHHHHHHHHTC--CSCE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 566788888887 578877742 3445554 33 345666653 10 1233577788888766 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++++.+.+..++.+++..| +|.|++--..
T Consensus 241 ~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 270 (369)
T 2p8b_A 241 MIDEGLKSSREMRQIIKLEAADKVNIKLMK 270 (369)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEeecch
Confidence 9999999999999999987 8999997543
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=1.7 Score=40.64 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=104.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|-++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ +.+.+.||-. +.. + -+.+...- ..+-+..
T Consensus 18 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 96 (301)
T 1xky_A 18 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHAS 96 (301)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHH
Confidence 4455666432223333334666666778876443 32 3455666532 121 2 34555543 3456677
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|.. .-| + .+-..+..+
T Consensus 97 i~la~~A~~~Gadavlv~--~P~y-----------~~~---s-----------------------------~~~l~~~f~ 131 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLV--APYY-----------NKP---S-----------------------------QEGMYQHFK 131 (301)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------SCC---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-----------CCC---C-----------------------------HHHHHHHHH
Confidence 788999999999998875 3432 000 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ ++++...++.+. .+-+|.-+. ..+..+.++.+..+++..| .+|.
T Consensus 132 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G~-- 198 (301)
T 1xky_A 132 AIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAV-YSGD-- 198 (301)
T ss_dssp HHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEE-EESS--
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHhcCCCeEE-EECc--
Confidence 677778999998664 567777776653 233444332 1344555666555445544 4442
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
...++.++.+|++++..+.+-++
T Consensus 199 -d~~~l~~l~~G~~G~is~~an~~ 221 (301)
T 1xky_A 199 -DGLTLPAMAVGAKGIVSVASHVI 221 (301)
T ss_dssp -GGGHHHHHHTTCCEEEESTHHHH
T ss_pred -HHHHHHHHHcCCCEEEcCHHHhC
Confidence 24477889999999999876543
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.81 Score=44.27 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.+.++++.+.||+++-+.++.+ +....
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 176 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHR------------------------------------------------DFDRD 176 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS------------------------------------------------SHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCC------------------------------------------------CHHHH
Confidence 667777778888889999988765421 11125
Q ss_pred HHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 214 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
.+.++.+|+.+ ++++.+..- .+.+++ +.+.+ .+++.|. + ...+..++.+.++++.+. ++||
T Consensus 177 ~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iE-------q-P~~~~~~~~~~~l~~~~~-~iPI 247 (389)
T 2oz8_A 177 LRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVE-------D-PILRHDHDGLRTLRHAVT-WTQI 247 (389)
T ss_dssp HHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEE-------S-CBCTTCHHHHHHHHHHCC-SSEE
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEe-------C-CCCCcCHHHHHHHHhhCC-CCCE
Confidence 66788899887 578887642 455554 45666 5665542 1 011235677788877642 6999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+ +..|+.+++..| +|.|++.
T Consensus 248 a~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 248 NSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp EECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred EeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 999999999988 8999996
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.051 Score=51.06 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=87.1
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCc-eeecCCCC----------CCHH---HHh----ccCCCceEEEEeec
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWST----------SSVE---EVA----STGPGIRFFQLYVY 132 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~-~~~s~~~~----------~~~e---ei~----~~~~~~~~~Qly~~ 132 (370)
..|++++-++. .++.-...++.+.+.|.. ++.=.+++ .+.| ++. +...-|.++.+...
T Consensus 93 ~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 93 EGPIFFSIAGM----SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp SSCCEEEECCS----SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred CCCEEEEcCCC----CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45766654321 122234677778888865 32211110 1222 222 22234678888765
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
-+.+...++++.++++|++++.++ +....+.. -|.... ..... ...... + ++.....+.
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~-~~~~~g~~-i~~~~~-----~~~~~--------~~~~~g--G----~sg~~~~~~ 227 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSV-NSIGNGLF-IDPEAE-----SVVIK--------PKDGFG--G----IGGAYIKPT 227 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEEC-CCEEEEEC-EETTTT-----EESCS--------GGGGEE--E----EESGGGHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEec-CCCCcCce-eccCCC-----Ccccc--------cCCCCC--c----cccccccHH
Confidence 566777778889999999999875 22110000 000000 00000 000000 0 000001123
Q ss_pred cHHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++.+ ++||+.-+ +.+++++..++.+|||+|.+.
T Consensus 228 ~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 578899999998 89988754 689999999999999999884
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=47.85 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=54.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+.|+...+.|+++|.|-.-.+ .-....+.|..+++.+ ++||+.-+.|.+..++..+.++|||+|.++.+.
T Consensus 76 ~~A~~y~~~GA~~isvltd~~----~f~Gs~~~l~~ir~~v--~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 76 KLAQAYQDGGARIVSVVTEQR----RFQGSLDDLDAVRASV--SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCGG----GHHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHcCCCEEEEecChh----hcCCCHHHHHHHHHhC--CCCEEECccccCHHHHHHHHHcCCCEEEEeccc
Confidence 557888899999999853211 0012456788888776 899999999999999999999999999997543
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=95.17 E-value=0.65 Score=44.70 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.+++| +...
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 175 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGS------------------------------------------------DPAQ 175 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCC------------------------------------------------ChHH
Confidence 5677777788888889999998875432 1112
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHHHHHHH---cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDARIAVQ---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~~a~~---aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
..+.++.+|+.+ ++|+.+..- .+.+++....+ .|+ .|. +. -+ .++.+.++++.+ ++||++
T Consensus 176 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------qP--~~-d~~~~~~l~~~~--~iPI~~ 242 (378)
T 2qdd_A 176 DIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------QP--CQ-TLDQCAHVARRV--ANPIML 242 (378)
T ss_dssp HHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------cC--CC-CHHHHHHHHHhC--CCCEEE
Confidence 566788899887 578888743 46676644332 344 331 10 11 677788887765 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++-+.+..++.+++..| +|.|++-...
T Consensus 243 dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 270 (378)
T 2qdd_A 243 DECLHEFSDHLAAWSRGACEGVKIKPNR 270 (378)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence 99999999999999987 8999996543
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.97 Score=42.13 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=104.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ + ++.+.+.+|.. +.. + -+.+...- ..+-+..
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 91 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEA 91 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 5556676433333333344666667778876443 3 23455666532 211 2 35555543 3456777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|..- . | ..+-..+..+
T Consensus 92 i~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------~~~~l~~~f~ 126 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSV--VPYYN----------K-P--------------------------------SQEGIYQHFK 126 (297)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCCC----------C-C--------------------------------CHHHHHHHHH
Confidence 788999999999999874 34320 0 0 0001234567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ .+++...++.+.. +-+|.-+. ..+..+.++.+..+++..|+ +|
T Consensus 127 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdss----------gd~~~~~~~~~~~~~~f~v~-~G--- 192 (297)
T 3flu_A 127 TIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEAS----------GNIGSNIELINRAPEGFVVL-SG--- 192 (297)
T ss_dssp HHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHSCTTCEEE-EC---
T ss_pred HHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE-EC---
Confidence 777778999998764 5677776665432 33343321 23455556666555556554 44
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
+..-++.++++||+++..+.+
T Consensus 193 ~d~~~l~~l~~G~~G~is~~a 213 (297)
T 3flu_A 193 DDHTALPFMLCGGHGVITVAA 213 (297)
T ss_dssp CGGGHHHHHHTTCCEEEESGG
T ss_pred cHHHHHHHHhCCCCEEEechH
Confidence 234467889999999998874
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.045 Score=51.58 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH----------HHHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~----------dv~kalalGAd~V 306 (370)
+-|+.+.++|+|+++.|.+ -+..+++.++ .-.+++++||+-.. .+.+++..|||.+
T Consensus 162 ~lA~~a~~~G~dGvV~s~~-------------E~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~i 227 (303)
T 3ru6_A 162 NFSKISYENGLDGMVCSVF-------------ESKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYI 227 (303)
T ss_dssp HHHHHHHHTTCSEEECCTT-------------THHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECHH-------------HHHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEE
Confidence 3467788999999877432 1445666653 33488899998321 4667788999999
Q ss_pred EEcHHHHH
Q 017492 307 FIGRPVVY 314 (370)
Q Consensus 307 ~igr~~l~ 314 (370)
.+||+++.
T Consensus 228 VvGr~I~~ 235 (303)
T 3ru6_A 228 VVGRPIYK 235 (303)
T ss_dssp EECHHHHT
T ss_pred EEChHHhC
Confidence 99999764
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.04 E-value=1.5 Score=41.87 Aligned_cols=229 Identities=16% Similarity=0.158 Sum_probs=118.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-ccCCCceEEE-------E---ee--cCChHHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPGIRFFQ-------L---YV--YKDRNVV 138 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-~~~~~~~~~Q-------l---y~--~~d~~~~ 138 (370)
.|++||.++.....+.+--..++++|+++|+.++=.. ....+.+. ... .-|| + |. .-..+..
T Consensus 19 ~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq--~~k~~tl~s~~~---~~fq~~~~~~~~y~~~~~~~l~~e~~ 93 (349)
T 2wqp_A 19 EPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQ--THIVEDEMSDEA---KQVIPGNADVSIYEIMERCALNEEDE 93 (349)
T ss_dssp CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEE--ECCHHHHCCGGG---GGCCCTTCSSCHHHHHHHHCCCHHHH
T ss_pred ceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeee--ecccccccCcch---hccccCCCCccHHHHHHHhCCCHHHH
Confidence 4899998865322222233479999999998865432 22344431 110 0011 1 10 1246777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC-ccHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDV 217 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i 217 (370)
..+.+.+++.|...+.=-+| .+.-|+-..+.+|- +.. ...+ .++..|
T Consensus 94 ~~L~~~~~~~Gi~~~st~~d-----~~svd~l~~~~v~~-~KI--------------------------~S~~~~n~~LL 141 (349)
T 2wqp_A 94 IKLKEYVESKGMIFISTLFS-----RAAALRLQRMDIPA-YKI--------------------------GSGECNNYPLI 141 (349)
T ss_dssp HHHHHHHHHTTCEEEEEECS-----HHHHHHHHHHTCSC-EEE--------------------------CGGGTTCHHHH
T ss_pred HHHHHHHHHhCCeEEEeeCC-----HHHHHHHHhcCCCE-EEE--------------------------CcccccCHHHH
Confidence 77888888999876542222 12222222222111 000 0011 156678
Q ss_pred HHHHHhcCCcEEEEec-CCHHHH----HHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEEEecCCC
Q 017492 218 KWLQTITKLPILVKGV-LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
+++.+ +++||++|.. .+.++. ..+.+.|.+.+.+ |+-+.....+ ..+..++.+++..+ .+||..++ =.
T Consensus 142 ~~va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLl--hc~s~Yp~~~~~~nL~ai~~lk~~f~-~lpVg~sd-Ht 216 (349)
T 2wqp_A 142 KLVAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALL--HCTNIYPTPYEDVRLGGMNDLSEAFP-DAIIGLSD-HT 216 (349)
T ss_dssp HHHHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEE--ECCCCSSCCGGGCCTHHHHHHHHHCT-TSEEEEEC-CS
T ss_pred HHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--eccCCCCCChhhcCHHHHHHHHHHCC-CCCEEeCC-CC
Confidence 88765 6999999965 466663 3445678866655 4333222211 13456676666531 58886654 22
Q ss_pred C-HHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHcCC
Q 017492 291 R-GTDVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 291 ~-~~dv~kalalGAd~V~igr~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G~ 344 (370)
. ..-...|+++||+ +|=+-|--.-+..|.++ --+-+..|.++++..-..+|.
T Consensus 217 ~G~~~~~AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 217 LDNYACLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp SSSHHHHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 2334457889999 33332211001112211 012356777777777777784
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.1 Score=41.77 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=104.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++-|+. .+-.+.+.-..+++-..+.|+...+ +| +.+.+.||-. +... -+.+...- ..+-+..
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (294)
T 2ehh_A 7 VALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEA 84 (294)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 45566765 5444444445667767778876443 32 3456666532 1212 34555543 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 119 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVV--VPYYN----------K-P---T-----------------------------QRGLYEHFK 119 (294)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788899999999999875 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.|.+.+++||++=.+ ++++...++. +. .+-+|.-+. ..+..+.++.+..+++..| .+|.
T Consensus 120 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds~----------gd~~~~~~~~~~~~~~f~v-~~G~- 187 (294)
T 2ehh_A 120 TVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKEST----------PNMDRISEIVKRLGESFSV-LSGD- 187 (294)
T ss_dssp HHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHCTTSEE-EESS-
T ss_pred HHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEE-EECc-
Confidence 677778999998653 5778777776 54 244444332 1244455555555445555 3442
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 188 --d~~~~~~l~~G~~G~is~~a 207 (294)
T 2ehh_A 188 --DSLTLPMMALGAKGVISVAN 207 (294)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHHCCCCEEEeCHH
Confidence 23467789999999999874
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.093 Score=46.23 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCcEEEE--ecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK--~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.++++++.++.|+++. .+.+.+.+..+.++|+|+|.+.. .....+. ..+.. ..+++.. +.+
T Consensus 46 ~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~~-~~~~~--g~~~~~g--~~t 110 (212)
T 2v82_A 46 EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN----------IHSEVIR-RAVGY--GMTVCPG--CAT 110 (212)
T ss_dssp HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS----------CCHHHHH-HHHHT--TCEEECE--ECS
T ss_pred HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC----------CCHHHHH-HHHHc--CCCEEee--cCC
Confidence 466788888788888874 35678889999999999996321 1122333 23333 4555543 899
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
..++.++..+|+|.|.+
T Consensus 111 ~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 111 ATEAFTALEAGAQALKI 127 (212)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999997
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.2 Score=48.00 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=36.7
Q ss_pred CccHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
...|+.++++++.+ ++||+.-| +.+++++..+++ |+|+|.++
T Consensus 182 ~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 182 PLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp CCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred cccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 45799999999998 89998865 579999999998 99999885
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.22 Score=49.16 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++=+.+.+|... ..+.. | . . .+...
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~------~~G~~-~----------------------~-~------~~~~~ 188 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTL------RGGHM-P----------------------A-M------TDISL 188 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBT------TCCBC-C----------------------C-H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc------ccCCC-c----------------------c-h------hhHHH
Confidence 4677777888888889999998887665310 00000 0 0 0 01123
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.=- ..+..++.+.++++.. .+||+
T Consensus 189 d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 258 (433)
T 3rcy_A 189 SVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEP--------VPPDNVGAMAQVARAV--RIPVA 258 (433)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHS--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEECC--------CChhhHHHHHHHHhcc--CCCEE
Confidence 567899999987 57888874 2566664 44556788887421 1123567888888876 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 259 ~dE~~~~~~~~~~~l~~g~~D~v~~d~~ 286 (433)
T 3rcy_A 259 TGERLTTKAEFAPVLREGAAAILQPALG 286 (433)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred ecCCCCCHHHHHHHHHcCCCCEEEeCch
Confidence 999999999999999988 899988653
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.27 Score=48.17 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.+++... + +. .+...
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d------------------------------g~-------~~~~~ 215 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D------------------------------GM-------PGMRE 215 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G------------------------------HH-------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c------------------------------cc-------chHHH
Confidence 467778888888888999999887653200 0 00 01123
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 216 die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 285 (412)
T 3stp_A 216 NLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEE--------PVIADDVAGYAELNAMN--IVPIS 285 (412)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhCC--CCCEE
Confidence 667899999987 578888753 466664 4556778888742 01123567788888765 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
+++-+.+..|+.+++..| +|.|++--..
T Consensus 286 ~dE~~~~~~~~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 286 GGEHEFSVIGCAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEecChhh
Confidence 999999999999999987 8999987544
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.86 E-value=1.9 Score=40.20 Aligned_cols=180 Identities=9% Similarity=0.042 Sum_probs=104.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHh-------cc-CC-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+++-..+.|+...+ +++.+.+.+|.. +. .. -+.+...- ..+-+.
T Consensus 9 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 87 (300)
T 3eb2_A 9 FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVA-STSVAD 87 (300)
T ss_dssp EEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEE-ESSHHH
T ss_pred EEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 35556676433333333334666666777875444 234456776532 22 12 35677764 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..- . | ..+-..+..
T Consensus 88 ai~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------~~~~l~~~f 122 (300)
T 3eb2_A 88 AVAQAKLYEKLGADGILAI--LEAYF----------P-L--------------------------------KDAQIESYF 122 (300)
T ss_dssp HHHHHHHHHHHTCSEEEEE--ECCSS----------C-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCC----------C-C--------------------------------CHHHHHHHH
Confidence 7788999999999999874 34320 0 0 000123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+..+++..|+. |.=
T Consensus 123 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~-G~d 191 (300)
T 3eb2_A 123 RAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDAS----------TNTGRLLSIINRCGDALQVFS-ASA 191 (300)
T ss_dssp HHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEEEECS----------SBHHHHHHHHHHHGGGSEEEE-CTT
T ss_pred HHHHHHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHHcCCCeEEEe-CcH
Confidence 7777778999998764 467777776543 233343321 134445555555544555554 422
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
..++.++++|++++..+.+
T Consensus 192 ---~~~~~~l~~G~~G~is~~a 210 (300)
T 3eb2_A 192 ---HIPAAVMLIGGVGWMAGPA 210 (300)
T ss_dssp ---SCHHHHHHTTCCEEEEGGG
T ss_pred ---HHHHHHHhCCCCEEEeChh
Confidence 2357789999999998874
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.089 Score=48.45 Aligned_cols=80 Identities=25% Similarity=0.455 Sum_probs=52.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH----H------HHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----D------VFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~----d------v~kalalGAd~V 306 (370)
+-|+.+.++|+|+++.|. ..+..+++.++ .--++++.|||-.. | +.+++..|||.+
T Consensus 148 ~~A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~-~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~i 213 (259)
T 3tfx_A 148 SLAKMAKHSGADGVICSP-------------LEVKKLHENIG-DDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAI 213 (259)
T ss_dssp HHHHHHHHTTCCEEECCG-------------GGHHHHHHHHC-SSSEEEECCCCCC-----------CHHHHHHTTCSEE
T ss_pred HHHHHHHHhCCCEEEECH-------------HHHHHHHhhcC-CccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 346777889999998742 13445555553 33477889998642 2 778889999999
Q ss_pred EEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 307 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 307 ~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
.+||+++.+ .. ....++.++++++
T Consensus 214 VvGr~I~~a---~d---p~~a~~~i~~~~~ 237 (259)
T 3tfx_A 214 VVGRPITLA---SD---PKAAYEAIKKEFN 237 (259)
T ss_dssp EECHHHHTS---SS---HHHHHHHHHHHHT
T ss_pred EEChHHhCC---CC---HHHHHHHHHHHHH
Confidence 999997642 11 2234566666553
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.68 Score=44.74 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=66.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++ ++.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 180 d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 249 (383)
T 3i4k_A 180 DTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFEQ--------PTPADDLETLREITRRT--NVSVM 249 (383)
T ss_dssp HHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEES--------CSCTTCHHHHHHHHHHH--CCEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 566789999987 478888742 45555 45567789888841 11123467788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..|+.+++..| +|.|++--
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 276 (383)
T 3i4k_A 250 ADESVWTPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEEcc
Confidence 999999999999999988 89999863
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=94.84 E-value=0.14 Score=47.13 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++||.+.+. .+++++..++.+|+|+++|++
T Consensus 193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 567899999988999999875 569999999999999999954
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.83 E-value=2.7 Score=39.53 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=106.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------cc-CC-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ ..+.+.+|.. +. .+ -+.+...- ..+-+.
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ 105 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSE 105 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 35566776433323333344667777778876544 22 3445666532 21 12 35566643 345677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|..- . | + .+-..+..
T Consensus 106 ai~la~~A~~~Gadavlv~--~P~y~----------~-~---~-----------------------------~~~l~~~f 140 (315)
T 3si9_A 106 AVELAKHAEKAGADAVLVV--TPYYN----------R-P---N-----------------------------QRGLYTHF 140 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHH
Confidence 7788999999999998874 34320 0 0 0 00123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.|.+.+++||++=.+ .+++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+ +|.
T Consensus 141 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~f~v~-~G~ 209 (315)
T 3si9_A 141 SSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDAT----------GKIERASEQREKCGKDFVQL-SGD 209 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHHCSSSEEE-ESC
T ss_pred HHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ecC
Confidence 6777778999998764 56787777766 3 344555432 12334455555555566654 442
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
..-++.++++|++++..+.+
T Consensus 210 ---d~~~l~~l~~G~~G~is~~a 229 (315)
T 3si9_A 210 ---DCTALGFNAHGGVGCISVSS 229 (315)
T ss_dssp ---GGGHHHHHHTTCCEEEESGG
T ss_pred ---HHHHHHHHHcCCCEEEecHH
Confidence 23467789999999998874
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.099 Score=48.88 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=56.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 30 ~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 109 (292)
T 3daq_A 30 NFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYN 109 (292)
T ss_dssp HHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4567899999999765432111111 122345555666667899998656555566554 44489999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 110 ~~---~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 110 KT---NQRGLVKHFEAIAD 125 (292)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 32 35555555544433
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.6 Score=42.90 Aligned_cols=97 Identities=22% Similarity=0.354 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHHHHHH----HHcCccEEEEccCCccCC-CCcc--chHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAEDARIA----VQAGAAGIIVSNHGARQL-DYVP--ATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~a~~a----~~aG~d~I~vs~~gg~~~-~~~~--~~~~~l~~i~~~~~~~ipv 283 (370)
+...++++.+ +++||++|... +++++..+ ...|..-+.+.-.|++.. .... ..+..++.+++.. .+||
T Consensus 119 n~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pV 195 (262)
T 1zco_A 119 NFELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPI 195 (262)
T ss_dssp CHHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCE
Confidence 3445777766 79999999764 67775544 457876666655565432 1211 2345666666654 6899
Q ss_pred EEecCCCCHH-----H-HHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRRGT-----D-VFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~-----d-v~kalalGAd~V~igr~~ 312 (370)
+++..=..+. . +..+.++||+++++=+-+
T Consensus 196 i~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 196 IVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp EECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 8876444443 4 334778999999998854
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.53 Score=45.76 Aligned_cols=126 Identities=15% Similarity=0.059 Sum_probs=89.5
Q ss_pred CChHHHHHHH-HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 133 KDRNVVAQLV-RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 133 ~d~~~~~~~l-~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
.+.+.+.+.+ +++.+.||+++=+.++.+... . ..++.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~----------------~--------------------------~~~~~ 175 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTR----------------C--------------------------DVDIP 175 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC----------------C--------------------------SCCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc----------------c--------------------------ccCHH
Confidence 4566666677 777778999998877643210 0 01122
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
.+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||
T Consensus 176 ~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI 245 (393)
T 4dwd_A 176 GDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFEE--------PVQHYHVGAMGEVAQRL--DITV 245 (393)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHhhC--CCCE
Confidence 3567899999987 688988753 456654 5567788888851 11123567788888776 8999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+++..+.+..|+.+++..|+|.|++--
T Consensus 246 a~dE~~~~~~~~~~~i~~~~d~v~~k~ 272 (393)
T 4dwd_A 246 SAGEQTYTLQALKDLILSGVRMVQPDI 272 (393)
T ss_dssp EBCTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred EecCCcCCHHHHHHHHHcCCCEEEeCc
Confidence 999999999999999998899998843
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.28 Score=43.86 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
..|...+.+.++++.+.|++.+-+.+ |.+. .| ..
T Consensus 15 a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~f-------------v~--------------------------------~~ 49 (228)
T 1h1y_A 15 SSDFANLAAEADRMVRLGADWLHMDIMDGHF-------------VP--------------------------------NL 49 (228)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSS-------------SS--------------------------------CB
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEEEecCCc-------------Cc--------------------------------ch
Confidence 45666777888999999999875432 2110 01 01
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-CCH-HHHHHHHHcCccEEEEccCCccCCCCccch-HHHHHHHHHHccCCCcEEEec
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-~~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvi~~G 287 (370)
.+..+.++++|+.++.|+.+-.. .++ +.++.+.++|+|+|.+ |++.. ... ...+..+++. .+.++.+=
T Consensus 50 ~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~v--H~~~~----~~~~~~~~~~i~~~---g~~igv~~ 120 (228)
T 1h1y_A 50 TIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTF--HIEVS----RDNWQELIQSIKAK---GMRPGVSL 120 (228)
T ss_dssp CBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEE--EGGGC----TTTHHHHHHHHHHT---TCEEEEEE
T ss_pred hhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEE--CCCCc----ccHHHHHHHHHHHc---CCCEEEEE
Confidence 23567899999988777775443 333 3478888999999999 54421 122 3345555432 45555555
Q ss_pred CCCCHHHHHHHHHh---CCCEEEEcHH
Q 017492 288 GVRRGTDVFKALAL---GASGIFIGRP 311 (370)
Q Consensus 288 GI~~~~dv~kalal---GAd~V~igr~ 311 (370)
.-.+..+.++.+.- ++|.|.+++-
T Consensus 121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv 147 (228)
T 1h1y_A 121 RPGTPVEEVFPLVEAENPVELVLVMTV 147 (228)
T ss_dssp CTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred eCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence 55676666677666 9999999753
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=48.48 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...+.++++.+.||+++-+.++.+ +.....+
T Consensus 141 e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~d~e 172 (382)
T 2gdq_A 141 SRSVSNVEAQLKKGFEQIKVKIGGT------------------------------------------------SFKEDVR 172 (382)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSS------------------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC------------------------------------------------CHHHHHH
Confidence 6667777788889999988764320 1123567
Q ss_pred HHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 216 DVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 216 ~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
.++.+|+.+ +.++.+.. ..+.+++ +.+.+. |++.|.= ...+..++.+.++++.+ ++||+++
T Consensus 173 ~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~d 242 (382)
T 2gdq_A 173 HINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEE--------PLPFDQPQDYAMLRSRL--SVPVAGG 242 (382)
T ss_dssp HHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEEC--------CSCSSCHHHHHHHHTTC--SSCEEEC
T ss_pred HHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEEC--------CCCcccHHHHHHHHhhC--CCCEEec
Confidence 788999887 57888874 2466664 445556 7766531 01123567777777765 7999999
Q ss_pred cCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 287 GGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+.+.+..++.+++..| +|.|++-
T Consensus 243 E~~~~~~~~~~~i~~~~~d~v~ik 266 (382)
T 2gdq_A 243 ENMKGPAQYVPLLSQRCLDIIQPD 266 (382)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999987 8999883
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=94.69 E-value=1.5 Score=40.67 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|-++.|+.-.+-.+.+.-..+.+-.-+.|+...+ ++ ..+.+.+|.. +.. + -+.+...- ..+-+..
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (291)
T 3tak_A 7 VAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREA 85 (291)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHH
Confidence 4556676433333333344666667778876444 32 3445666532 221 2 34555543 3456777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|..- . | ..+-..+..+
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------~~~~l~~~f~ 120 (291)
T 3tak_A 86 IELTKAAKDLGADAALLV--TPYYN----------K-P--------------------------------TQEGLYQHYK 120 (291)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCCC----------C-C--------------------------------CHHHHHHHHH
Confidence 788899999999999874 34320 0 0 0001234567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+..+++..|+ +|.
T Consensus 121 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ss----------gd~~~~~~~~~~~~~~f~v~-~G~-- 187 (291)
T 3tak_A 121 AIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDAT----------GDVPRGKALIDALNGKMAVY-SGD-- 187 (291)
T ss_dssp HHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHTTSSEEE-ECC--
T ss_pred HHHHhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ECc--
Confidence 777778999998764 567777666543 233343321 23444555555554566554 442
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 188 -d~~~~~~l~~G~~G~is~~~ 207 (291)
T 3tak_A 188 -DETAWELMLLGADGNISVTA 207 (291)
T ss_dssp -HHHHHHHHHTTCCEEEESGG
T ss_pred -HHHHHHHHHCCCCEEEechh
Confidence 45567889999999998874
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.32 Score=43.32 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=79.7
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEec-CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
...|.....+.++.+.+.|++.+-+.+ |.+.. | +
T Consensus 18 ~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~-------------~--------------------------------~ 52 (230)
T 1rpx_A 18 LSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFV-------------P--------------------------------N 52 (230)
T ss_dssp GGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSS-------------S--------------------------------C
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcc-------------c--------------------------------c
Confidence 456777778889999999998876653 21110 0 0
Q ss_pred CCccHHHHHHHHHhcCCcEEEEec-CCH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 210 RSLSWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK~v-~~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
..+..+.++++++.++.|+.+-.. .++ +.++.+.++|+|+|.+...... .....+.+..+.+. .+.++.+=
T Consensus 53 ~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~----~~~~~~~~~~~~~~---g~~ig~~~ 125 (230)
T 1rpx_A 53 ITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSS----TIHLHRTINQIKSL---GAKAGVVL 125 (230)
T ss_dssp BCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTT----CSCHHHHHHHHHHT---TSEEEEEE
T ss_pred cccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCcc----chhHHHHHHHHHHc---CCcEEEEe
Confidence 113467889999988778776654 344 3688899999999998432001 11222344444432 34555553
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcH
Q 017492 288 GVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr 310 (370)
--.+..+.++++..++|.|.+.+
T Consensus 126 ~p~t~~e~~~~~~~~~d~vl~~~ 148 (230)
T 1rpx_A 126 NPGTPLTAIEYVLDAVDLVLIMS 148 (230)
T ss_dssp CTTCCGGGGTTTTTTCSEEEEES
T ss_pred CCCCCHHHHHHHHhhCCEEEEEE
Confidence 33466677777778999885443
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.43 Score=45.65 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.|++++=+.+++. +..
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~-------------------------------------------------~~~ 168 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTG-------------------------------------------------IEA 168 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCC-------------------------------------------------HHH
Confidence 4677777777777788999887654321 112
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ ++++.+.. ..+.++|. .+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 169 d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 238 (354)
T 3jva_A 169 DIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQ--------PVKRRDLEGLKYVTSQV--NTTIM 238 (354)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEEC--------CSCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhhHHHHHHHHHhC--CCCEE
Confidence 466788889887 57888774 25666654 344556666631 11123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
+++.+.+..|+.+++..| +|.|++--..
T Consensus 239 ~dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 267 (354)
T 3jva_A 239 ADESCFDAQDALELVKKGTVDVINIKLMK 267 (354)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence 999999999999999987 7999997543
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.48 Score=45.79 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=84.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.|++++-+.+++. +.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~iKiK~G~~-------------------------------------------------~~ 173 (378)
T 3eez_A 143 AKSVEETRAVIDRYRQRGYVAHSVKIGGD-------------------------------------------------VE 173 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeccCCC-------------------------------------------------HH
Confidence 35677777778888889999988765431 11
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
.+.+.++.+|+.+ +.++.++.- .+.++|. .+.+.|+ .|. + -.+.++.+.++++.. .+||
T Consensus 174 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------q---P~~~~~~~~~l~~~~--~iPI 240 (378)
T 3eez_A 174 RDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------Q---PGETLDDIAAIRPLH--SAPV 240 (378)
T ss_dssp HHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------C---CSSSHHHHHHTGGGC--CCCE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------c---CCCCHHHHHHHHhhC--CCCE
Confidence 2456788888887 578888753 4566654 3445565 442 1 112566677666655 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++++.+.+..|+.+++..| +|.|++....
T Consensus 241 a~dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 241 SVDECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred EECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 9999999999999999987 8999998654
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.21 Score=48.52 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.+.++++.+.||+++-+.++.+ +....
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~~ 196 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA------------------------------------------------PIEED 196 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC------------------------------------------------CHHHH
Confidence 566677777888889999988765421 11224
Q ss_pred HHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.= ...+..++.+.++++.+ ++||++
T Consensus 197 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 266 (392)
T 1tzz_A 197 RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE--------VGDPLDYALQAALAEFY--PGPMAT 266 (392)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHTTTC--CSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeecC--------CCChhhHHHHHHHHhhC--CCCEEE
Confidence 66788888877 57888764 2456654 4455677777631 01123566777777655 799999
Q ss_pred ecCCCCHHHHHHHHHhC-----CCEEEEc
Q 017492 286 DGGVRRGTDVFKALALG-----ASGIFIG 309 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-----Ad~V~ig 309 (370)
++.+.+..++.+++..| +|.|++-
T Consensus 267 dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 267 GENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp CTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred CCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 99999999999999988 8999884
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.066 Score=52.44 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.++.++++|+|.|++..+.|. .....+.+.++++.. .+||++ |++.+.+++.+++.+|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 57799999999999988533221 112245666666554 688887 78999999999999999999996
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.25 Score=47.48 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=83.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+...+.++++.+.||+++-++++. +..
T Consensus 144 ~~~~~~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~ 174 (371)
T 2ps2_A 144 VGEPEDMRARVAKYRAKGYKGQSVKISG-------------------------------------------------EPV 174 (371)
T ss_dssp SCCHHHHHHHHHHHHTTTCCEEEEECCS-------------------------------------------------CHH
T ss_pred CCCHHHHHHHHHHHHHhChheEEeecCC-------------------------------------------------CHH
Confidence 3567777778888888999998876531 011
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHHH----HH-HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDAR----IA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~----~a-~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
...+.++.+|+.+ ++++.+..- .+.+++. .+ .+.|+ .|. + ..+.++.+.++++.+ ++|
T Consensus 175 ~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE-------~---P~~~~~~~~~l~~~~--~iP 241 (371)
T 2ps2_A 175 TDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALE-------A---PCATWRECISLRRKT--DIP 241 (371)
T ss_dssp HHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEE-------C---CBSSHHHHHHHHTTC--CSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCc-------C---CcCCHHHHHHHHhhC--CCC
Confidence 2456788888877 578877742 4566653 33 44566 442 1 011567777777665 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 283 VFLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
|++++.+.+..++.+++..| +|.|++--.
T Consensus 242 I~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (371)
T 2ps2_A 242 IIYDELATNEMSIVKILADDAAEGIDLKIS 271 (371)
T ss_dssp EEESTTCCSHHHHHHHHHHTCCSEEEEEHH
T ss_pred EEeCCCcCCHHHHHHHHHhCCCCEEEechh
Confidence 99999999999999999987 899999653
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.14 Score=49.42 Aligned_cols=118 Identities=8% Similarity=0.065 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+.+.+.++++.+.||+++-+.++++. .++..+.+
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g----------------------------------------------~~~~~d~~ 181 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMG----------------------------------------------DDPDTDYA 181 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTT----------------------------------------------SCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCC----------------------------------------------CCHHHHHH
Confidence 66777778888889999988765320 01223567
Q ss_pred HHHHHHHhc--CCcEEEEec--CC-HHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 216 DVKWLQTIT--KLPILVKGV--LT-AEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 216 ~i~~ir~~~--~~Pv~vK~v--~~-~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
.++.+|+.+ +.++.+..- .+ .++|.. +.+.|++.|.= ...+..++.+.++++.. .+||+++
T Consensus 182 ~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~d 251 (374)
T 3sjn_A 182 IVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIEE--------PVLADSLISYEKLSRQV--SQKIAGG 251 (374)
T ss_dssp HHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEEC--------SSCTTCHHHHHHHHHHC--SSEEEEC
T ss_pred HHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEEC--------CCCcccHHHHHHHHhhC--CCCEEeC
Confidence 789999986 578888753 56 766543 44567777741 01123567788888876 8999999
Q ss_pred cCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 287 GGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+-+.+..|+.+++..| +|.|++-
T Consensus 252 E~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 252 ESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp TTCCHHHHHHHHHHHHCCSEECCB
T ss_pred CCcCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999876 7998874
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.099 Score=48.85 Aligned_cols=90 Identities=14% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (291)
T 3tak_A 29 EWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYN 108 (291)
T ss_dssp HHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4467899999998765432111111 122345555666667899998555545566554 44589999999999876
Q ss_pred HHHhcCHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~ 332 (370)
.. .++++.++++.+.
T Consensus 109 ~~---~~~~l~~~f~~ia 123 (291)
T 3tak_A 109 KP---TQEGLYQHYKAIA 123 (291)
T ss_dssp CC---CHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHH
Confidence 32 3555554444443
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.15 Score=47.86 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=55.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 43 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 43 AAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 355778999999997654421111111 22345555666667899986555445455544 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~ 332 (370)
+.. .++++.++++.+.
T Consensus 123 ~~~---~~~~l~~~f~~ia 138 (304)
T 3cpr_A 123 SKP---SQEGLLAHFGAIA 138 (304)
T ss_dssp SCC---CHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHH
Confidence 532 3555555544443
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.11 Score=45.55 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++.+ ++|+++-+..+++++..+.++|+|+++++
T Consensus 146 ~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 146 PIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp SHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 577889999986 89998876657899999999999999984
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.1 Score=52.49 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.++.+.++|+|.|.+....|. .....+.+.++++.. +++||++ |.+.+.+++..+..+|||+|.+|
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~v~~i~~~~-p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHGH----SKGVIERVRWVKQTF-PDVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCS----BHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccCCc----chhHHHHHHHHHHHC-CCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 57789999999999998643221 234556788887766 3678887 77999999999999999999985
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=94.48 E-value=0.1 Score=50.58 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=67.6
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.+-+.-+.+.+.++++.++++|+++|.++- +.. + |.. ..-|. . .+ ..+..++.
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~n-tt~-~-r~~-----~~~~~-~--~~---------~~gGlSG~-- 278 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTN-TTV-S-RPA-----GLQGA-L--RS---------ETGGLSGK-- 278 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECC-CBS-C-CCT-----TCCCT-T--TT---------SSSEEEEG--
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeC-CCc-c-ccc-----ccccc-c--cc---------ccCCcCCc--
Confidence 46788877666677788899999999999998862 211 1 100 00000 0 00 00000010
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
...+..++.++++++.+ ++||+.- ++.+.++|..++++|||+|.+.
T Consensus 279 -----~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 279 -----PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp -----GGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred -----ccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 11123678999999999 7998864 5789999999999999999984
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.46 E-value=1 Score=42.13 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=103.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+. .+-.+.+.-..+++-..+.|+...+ + +..+.+.||-. +. .+ -+.+...- ..+-+..
T Consensus 19 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~a 96 (306)
T 1o5k_A 19 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKT 96 (306)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHHH
Confidence 55567775 4444444445677777778875443 3 33456766532 12 12 34555543 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 97 i~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 131 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVV--TPYYN----------K-P---T-----------------------------QEGLYQHYK 131 (306)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788999999999999875 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHccC---CCcEEEe
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLD 286 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvi~~ 286 (370)
.|.+.+++||++=.+ .+++...++. +. .+-+|.-+. ..+..+.++.+..++ +..| .+
T Consensus 132 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~~f~v-~~ 200 (306)
T 1o5k_A 132 YISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEAN----------PDIDQIDRTVSLTKQARSDFMV-WS 200 (306)
T ss_dssp HHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------CCHHHHHHHHHHHHHHCTTCEE-EE
T ss_pred HHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHhcCCCCCcEEE-EE
Confidence 667778999998654 5677777766 53 344444432 123344444443332 4444 44
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
|- ...++.++.+||+++..+.+
T Consensus 201 G~---d~~~l~~l~~G~~G~is~~a 222 (306)
T 1o5k_A 201 GN---DDRTFYLLCAGGDGVISVVS 222 (306)
T ss_dssp SS---GGGHHHHHHHTCCEEEESGG
T ss_pred Cc---HHHHHHHHHCCCCEEEecHH
Confidence 42 24477889999999999874
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.12 Score=48.02 Aligned_cols=72 Identities=28% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-------------HHHHHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFKALA 300 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-------------~dv~kala 300 (370)
.+.+++..|.+.|||.|.+... ....+-.|+...+..+++.+ ++||.+.=--|.+ .|+..+.+
T Consensus 47 ~s~~~a~~A~~gGAdRIELc~~--l~~GGlTPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~ 122 (287)
T 3iwp_A 47 DSVESAVNAERGGADRIELCSG--LSEGGTTPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKL 122 (287)
T ss_dssp SSHHHHHHHHHHTCSEEEECBC--GGGTCBCCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEECCC--CCCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHH
Confidence 7899999999999999998643 11112245666777777665 6898886444444 79999999
Q ss_pred hCCCEEEEc
Q 017492 301 LGASGIFIG 309 (370)
Q Consensus 301 lGAd~V~ig 309 (370)
+|||+|.+|
T Consensus 123 ~GAdGvVfG 131 (287)
T 3iwp_A 123 YGADGLVFG 131 (287)
T ss_dssp TTCSEEEEC
T ss_pred cCCCEEEEe
Confidence 999999999
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.43 E-value=1.1 Score=41.59 Aligned_cols=178 Identities=17% Similarity=0.152 Sum_probs=104.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-. -.+.+.-..+.+-..+.|+...+ + ++.+.+.+|.. +. .+ -+.+...- ..+-+..
T Consensus 9 ~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 86 (292)
T 3daq_A 9 VALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKS 86 (292)
T ss_dssp EECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHH
Confidence 4556676433 33444444677777778875443 2 33456666532 22 12 35566543 3456777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|..- . | ..+-..+..+
T Consensus 87 i~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------~~~~l~~~f~ 121 (292)
T 3daq_A 87 IQASIQAKALGADAIMLI--TPYYN----------K-T--------------------------------NQRGLVKHFE 121 (292)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCCC----------C-C--------------------------------CHHHHHHHHH
Confidence 788999999999999875 34320 0 0 0001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccC-CCcEEEecCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGV 289 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvi~~GGI 289 (370)
.|.+.+++||++=.+ ++++...++.+.. +-+|.-+. ..+..+.++.+..++ +..|+ +|.
T Consensus 122 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ss----------gd~~~~~~~~~~~~~~~f~v~-~G~- 189 (292)
T 3daq_A 122 AIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDAT----------NDFEYLEEVKKRIDTNSFALY-SGN- 189 (292)
T ss_dssp HHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECC----------CCHHHHHHHHTTSCTTTSEEE-ESC-
T ss_pred HHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHHCCCCCEEEE-ECC-
Confidence 677777999998764 5678777776632 33333321 134556666655544 45554 342
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++++||+++..+.+
T Consensus 190 --d~~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 190 --DDNVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHhcCCCEEEeCHH
Confidence 24477889999999998874
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.09 Score=49.78 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=55.0
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 50 ~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~ 129 (315)
T 3si9_A 50 EWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYN 129 (315)
T ss_dssp HHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4577899999998665332111111 122355555666667899988655555566554 44589999999999875
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.++++.+
T Consensus 130 ~~---~~~~l~~~f~~v 143 (315)
T 3si9_A 130 RP---NQRGLYTHFSSI 143 (315)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 32 345554444443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.14 Score=47.78 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHH-cCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 240 RIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 240 ~~a~~-aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
+.+++ .|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 31 ~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (293)
T 1f6k_A 31 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp HHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45678 99999999765332111111 122345555666667899987555545555544 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+.. .++++.++++.+.+
T Consensus 111 ~~~---~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 111 YKF---SFPEIKHYYDTIIA 127 (293)
T ss_dssp SCC---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 532 35555555554433
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.078 Score=48.24 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=49.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH-H---------HHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-D---------VFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~-d---------v~kalalGAd~V 306 (370)
+-|+.+.++|+|++++|.+ -...+++.++.+ .++++.|||-.. + ..+++..|||.+
T Consensus 148 ~~A~~a~~~g~~GvV~s~~-------------e~~~ir~~~~~~-fl~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~l 213 (239)
T 3tr2_A 148 RMATLAKSAGLDGVVCSAQ-------------EAALLRKQFDRN-FLLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYL 213 (239)
T ss_dssp HHHHHHHHHTCCEEECCHH-------------HHHHHHTTCCTT-SEEEECCBC----------CCBCHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEECch-------------hHHHHHHhcCCC-cEEECCCcCCCCCCcCcccccCCHHHHHHcCCCEE
Confidence 3467778899999987531 223455544333 377889998533 2 567888999999
Q ss_pred EEcHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017492 307 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 307 ~igr~~l~~~~~~G~~~v~~~l~~l~~el 335 (370)
.+||+++.+ .. ....++.+++++
T Consensus 214 VvGr~I~~a---~d---p~~a~~~i~~~i 236 (239)
T 3tr2_A 214 VIGRPITQS---TD---PLKALEAIDKDI 236 (239)
T ss_dssp EECHHHHTS---SS---HHHHHHHHHHHC
T ss_pred EEChHHhCC---CC---HHHHHHHHHHHH
Confidence 999997642 11 223445555554
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.15 Score=47.95 Aligned_cols=88 Identities=15% Similarity=0.300 Sum_probs=52.9
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 40 ~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 119 (301)
T 1xky_A 40 NYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYN 119 (301)
T ss_dssp HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 45678999999997654321111111 22345555666667899987555444455543 33489999999999875
Q ss_pred HHHhcCHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEM 330 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~ 330 (370)
.. .++++.++++.
T Consensus 120 ~~---s~~~l~~~f~~ 132 (301)
T 1xky_A 120 KP---SQEGMYQHFKA 132 (301)
T ss_dssp CC---CHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHH
Confidence 32 34554444443
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.08 Score=48.63 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=52.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HH---------HHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~d---------v~kalalGAd~V 306 (370)
+-|+.+.++|+|++++|. ..+..+++.++.+. ++++.||+-. .+ ..+++..|||.+
T Consensus 166 ~~A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~i 231 (255)
T 3ldv_A 166 RLATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYL 231 (255)
T ss_dssp HHHHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEE
Confidence 346677889999998752 24556666664344 6788889742 23 567888999999
Q ss_pred EEcHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017492 307 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 307 ~igr~~l~~~~~~G~~~v~~~l~~l~~el 335 (370)
.+||+++.+ +.....++.+++|+
T Consensus 232 VvGr~I~~a------~dp~~a~~~i~~ei 254 (255)
T 3ldv_A 232 VIGRPITQA------AHPEVVLEEINSSL 254 (255)
T ss_dssp EECHHHHTC------SCHHHHHHHHHHHC
T ss_pred EECHHHhCC------CCHHHHHHHHHHhh
Confidence 999998642 11223455565554
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.16 Score=47.58 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=54.5
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 35 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 114 (297)
T 3flu_A 35 DWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYN 114 (297)
T ss_dssp HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 44678999999997654421111111 22345555666667899998555445555544 33589999999999876
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.++++.+
T Consensus 115 ~~---~~~~l~~~f~~v 128 (297)
T 3flu_A 115 KP---SQEGIYQHFKTI 128 (297)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 32 345554444443
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.12 Score=50.65 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=66.9
Q ss_pred Cc-eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017492 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (370)
Q Consensus 123 ~~-~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (370)
.| .++.|-+.-+.+.+.++++.++++|+++|+++- +.. .|. |+.. + .+ ..+..++.
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~N-tt~--~r~-dl~~-~--------~~---------~~GGlSG~- 325 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN-TTT--QIN-DIKS-F--------EN---------KKGGVSGA- 325 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECC-CBS--CCC-CCGG-G--------TT---------CCSEEEEG-
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeC-CCc--ccc-cccc-c--------cc---------ccCCcCCc-
Confidence 45 688887666666788899999999999998862 211 011 1100 0 00 00000010
Q ss_pred HHhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
...+..++.|+++++.+ ++||+.- ++.+.+||..++.+|||+|.+.
T Consensus 326 ------a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIg 374 (415)
T 3i65_A 326 ------KLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 374 (415)
T ss_dssp ------GGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEES
T ss_pred ------cchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 01123678899999988 6998764 5799999999999999999984
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.15 Score=47.96 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=56.7
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.=|=.+-.++++ +-.+|||++++-.|+++
T Consensus 39 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 118 (303)
T 2wkj_A 39 QFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYY 118 (303)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCC
Confidence 4567899999999765432111111 122345555666667899987544444455443 33489999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~e 334 (370)
.. .++++.++++.+.+.
T Consensus 119 ~~---s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 119 PF---SFEEHCDHYRAIIDS 135 (303)
T ss_dssp CC---CHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHh
Confidence 42 456666666655544
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=51.81 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=129.9
Q ss_pred hcccceeeecccC-CCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..-. ..+++|++|.+- +..+..|++.|||...+ |..+|.+.++.|-..++. .+++.++.++
T Consensus 12 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVT------e~~ma~a~a~~GGiGvI~--~n~s~e~qa~ 83 (496)
T 4fxs_A 12 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIH--KNMSIEQQAA 83 (496)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHHTCEEEEC--SSSCHHHHHH
T ss_pred CcccEEEecCccccccccccccceeccccccCCCceecCcchhh------HHHHHHHHHHcCCcceec--CCCCHHHHHH
Confidence 6899999997542 235789998875 58899999999997653 556777777777666664 3455554221
Q ss_pred -------cCC----CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccccccccc
Q 017492 120 -------TGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 120 -------~~~----~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
... .+.++ .....+.+.++...+.++..+-|.=+. .+.--..+|++..- ........+-.
T Consensus 84 ~V~~Vk~~~~~m~~d~v~v-----~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~--~~~~~v~diM~ 156 (496)
T 4fxs_A 84 QVHQVKIFEAGVVTHPVTV-----RPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT--DLTKSVAAVMT 156 (496)
T ss_dssp HHHHHHHCCC--CBCCCCB-----CSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC--CTTSBGGGTSE
T ss_pred HHHhccccccccccCceEE-----CCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc--cCCCcHHHHhc
Confidence 111 22221 223344566666777888877664211 00001235554111 00000000000
Q ss_pred -c-ccCcccc-ccchhhHHHhh-------hcCC------CCccHHHHHHHHHh------cCCcEEEEe-c----CCHHHH
Q 017492 187 -L-DLGKMDE-ANDSGLAAYVA-------GQID------RSLSWKDVKWLQTI------TKLPILVKG-V----LTAEDA 239 (370)
Q Consensus 187 -~-~~~~~~~-~~~~~~~~~~~-------~~~d------~~~~~~~i~~ir~~------~~~Pv~vK~-v----~~~~~a 239 (370)
. ......+ ....-..+.+. +..| .-.+.+++.+.... .+..+.+.. + ...+.+
T Consensus 157 p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a 236 (496)
T 4fxs_A 157 PKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERV 236 (496)
T ss_dssp EGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHH
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHH
Confidence 0 0000000 00000000000 0000 00122332222111 111222221 1 346889
Q ss_pred HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+.++|+|.|.+...-+ .....++.+.++++.. +++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 237 ~~l~~aG~d~I~id~a~g----~~~~~~~~i~~ir~~~-p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 237 KALVEAGVDVLLIDSSHG----HSEGVLQRIRETRAAY-PHLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHC-TTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHhccCceEEeccccc----cchHHHHHHHHHHHHC-CCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 999999999999864322 1233456788888776 3688888 77999999999999999999986
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.26 E-value=3.6 Score=38.59 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=104.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ + ++.+.+.+|.. +.. + -+.+...- ..+-+..
T Consensus 29 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~ea 107 (314)
T 3qze_A 29 VALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTREA 107 (314)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 5566676433333333334666666777875433 2 33456766532 111 2 34555543 3456677
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|..- . | ..+-..+..+
T Consensus 108 i~la~~A~~~Gadavlv~--~P~y~----------~-~--------------------------------s~~~l~~~f~ 142 (314)
T 3qze_A 108 VALTEAAKSGGADACLLV--TPYYN----------K-P--------------------------------TQEGMYQHFR 142 (314)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--CCCCC----------C-C--------------------------------CHHHHHHHHH
Confidence 788999999999999875 34320 0 0 0001234566
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+..+++..|+ +|.
T Consensus 143 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~-~G~-- 209 (314)
T 3qze_A 143 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEAT----------GDLQRAKEVIERVGKDFLVY-SGD-- 209 (314)
T ss_dssp HHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHSCTTSEEE-ESC--
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEcCC----------CCHHHHHHHHHHcCCCeEEE-ecC--
Confidence 777778999998764 567777776653 233343321 23445556666555556554 442
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++++||+++.-+.+
T Consensus 210 -d~~~l~~l~~Ga~G~is~~a 229 (314)
T 3qze_A 210 -DATAVELMLLGGKGNISVTA 229 (314)
T ss_dssp -GGGHHHHHHTTCCEEEESGG
T ss_pred -hHHHHHHHHCCCCEEEecHH
Confidence 23477889999999988874
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.26 E-value=3.6 Score=38.55 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=107.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.+|.. +... -+.+...- ..+-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~ 90 (311)
T 3h5d_A 12 ITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRD 90 (311)
T ss_dssp EEECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHH
T ss_pred EEeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 35566777544434555556777777788875433 32 3445666532 2222 35555543 345667
Q ss_pred HHHHHHHHHHcCC-cEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 138 VAQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 138 ~~~~l~ra~~~G~-~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
..++.+.|+++|+ +++.+. +|..- . | ..+-..+.
T Consensus 91 ai~la~~A~~~Ga~davlv~--~P~y~----------~-~--------------------------------s~~~l~~~ 125 (311)
T 3h5d_A 91 SIEFVKEVAEFGGFAAGLAI--VPYYN----------K-P--------------------------------SQEGMYQH 125 (311)
T ss_dssp HHHHHHHHHHSCCCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEc--CCCCC----------C-C--------------------------------CHHHHHHH
Confidence 7788899999997 998774 34320 0 0 00012345
Q ss_pred HHHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 217 VKWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.|.+.+++||++=.+ .+++...++.+.. +-+|.- .. .+..+.++.+..+++..|+ +|.
T Consensus 126 f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKd---------ss--d~~~~~~~~~~~~~~f~v~-~G~ 193 (311)
T 3h5d_A 126 FKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKE---------CT--SLANMAYLIEHKPEEFLIY-TGE 193 (311)
T ss_dssp HHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEE---------CS--CHHHHHHHHHHCCSSCEEE-ECC
T ss_pred HHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEe---------CC--CHHHHHHHHHHcCCCEEEE-ECc
Confidence 67777778999998764 5677777776642 223322 22 3555666666655455554 342
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
...++.++++||+++..+.+-+
T Consensus 194 ---d~~~l~~l~~Ga~G~is~~an~ 215 (311)
T 3h5d_A 194 ---DGDAFHAMNLGADGVISVASHT 215 (311)
T ss_dssp ---GGGHHHHHHHTCCEEEESTHHH
T ss_pred ---HHHHHHHHHcCCCEEEechhhh
Confidence 2446788999999999987643
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.53 Score=41.58 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHcC---Cceee--cCCCCCCHHHHhcc----CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Q 017492 94 ARAASAAG---TIMTL--SSWSTSSVEEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (370)
Q Consensus 94 a~aa~~~G---~~~~~--s~~~~~~~eei~~~----~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~ 164 (370)
+++|.++| +.+++ .+-...++++..+. .+...-+-+|.+.+.+. ..+.+++.+.+.+-+
T Consensus 14 a~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~---i~~~~~~~~ld~vQL--------- 81 (203)
T 1v5x_A 14 ALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEE---VLRLMEEARLQVAQL--------- 81 (203)
T ss_dssp HHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHH---HHHHHHHTTCSEEEE---------
T ss_pred HHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHH---HHHHHHhhCCCEEEE---------
Q ss_pred hhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHH
Q 017492 165 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAV 243 (370)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~ 243 (370)
+.+.+.+.++.++. ++|++-... .+.++. .+.
T Consensus 82 --------------------------------------------HG~e~~~~~~~l~~--~~~vika~~v~~~~~l-~~~ 114 (203)
T 1v5x_A 82 --------------------------------------------HGEEPPEWAEAVGR--FYPVIKAFPLEGPARP-EWA 114 (203)
T ss_dssp --------------------------------------------CSCCCHHHHHHHTT--TSCEEEEEECSSSCCG-GGG
T ss_pred --------------------------------------------CCCCCHHHHHHhcc--CCCEEEEEEcCChHhh-hhh
Q ss_pred HcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 244 QAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 244 ~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
+..+|++.+... ||+ +..-.|+.+..+... ..|++..||+ +++++.+++.+++.+|=+.|.+=..-+.+-.+
T Consensus 115 ~~~~d~~LlD~~~gGt---G~~fdW~~l~~~~~~---~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~pG~KD~~ 187 (203)
T 1v5x_A 115 DYPAQALLLDGKRPGS---GEAYPRAWAKPLLAT---GRRVILAGGI-APENLEEVLALRPYALDLASGVEEAPGVKSAE 187 (203)
T ss_dssp GSSCSEEEEECSSTTS---CCCCCGGGGHHHHHT---TSCEEECSSC-CSTTHHHHHHHCCSEEEESGGGEEETTEECHH
T ss_pred hcCCCEEEEcCCCCCC---CCccCHHHHHhhhcc---CCcEEEECCC-CHHHHHHHHhcCCCEEEeCCceecCCCCcCHH
Q ss_pred HHHHHHHHHHH
Q 017492 323 GVRRVLEMLRE 333 (370)
Q Consensus 323 ~v~~~l~~l~~ 333 (370)
-+..+++.++.
T Consensus 188 ki~~fi~~~r~ 198 (203)
T 1v5x_A 188 KLRALFARLAS 198 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.13 Score=51.90 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=111.6
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|..- ...+++|++|.|- +.+|..||+-|||-..+ |..+|.+.++.|-..++. .++++|+.+
T Consensus 60 LTfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVT------e~~MAIamAr~GGiGvIH--~n~sie~Qa 131 (556)
T 4af0_A 60 LTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVT------EDRMAIALALHGGLGIIH--HNCSAEEQA 131 (556)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTC------SHHHHHHHHHTTCEEEEC--CSSCHHHHH
T ss_pred CChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCccccc------CHHHHHHHHHCCCeEEEc--CCCCHHHHH
Confidence 4799999999754 2335899999994 78999999999996554 778999999999888884 457787644
Q ss_pred cc------CCCceEEE--EeecCChHHHHHHHHHHHHcCCcEEEEecCCCC----Cc-chhHHhhhhcCCCCcccccccc
Q 017492 119 ST------GPGIRFFQ--LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR----LG-RREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 119 ~~------~~~~~~~Q--ly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~----~g-~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
+. .. ..|+. +. -.+...+.+.++..++.++..+.|+-+-.. .| ...+|++. .-+.. ....+-
T Consensus 132 ~~V~~VKr~e-~g~i~dPvt-l~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf--~d~~~-~V~evM 206 (556)
T 4af0_A 132 AMVRRVKKYE-NGFITDPLC-LGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF--QDAET-PIKSVM 206 (556)
T ss_dssp HHHHHHHHCC-C--------------------------------------------------------------------
T ss_pred HHHHHHHhcc-cCccCCCeE-cCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc--cccce-Ehhhhc
Confidence 22 11 11221 11 112333444555555666666655432110 00 11233321 10000 000000
Q ss_pred ccccCcccc-ccchhhHHHhh-------hcCCCC------ccHHHHHHHHHhcCCcEEEE------------ecCC---H
Q 017492 186 GLDLGKMDE-ANDSGLAAYVA-------GQIDRS------LSWKDVKWLQTITKLPILVK------------GVLT---A 236 (370)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~-------~~~d~~------~~~~~i~~ir~~~~~Pv~vK------------~v~~---~ 236 (370)
.-.+-.... ....-+.+.+. +..|.+ .+.+++...+ ..|.--| ...+ .
T Consensus 207 T~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~---~~p~A~k~d~~grL~VgAAVgv~~d~~ 283 (556)
T 4af0_A 207 TTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ---NYPYASKVPESKQLYCGAAIGTRPGDK 283 (556)
T ss_dssp ------------------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHH
T ss_pred ccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh---hCCcchhcchhhceeeEEEeccCccHH
Confidence 000000000 00000000000 000000 1122222222 1222112 1122 3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+-+..+.++|+|.|++...-|+ ....++.+..+++.. .+++||+ |.|-+++-+...+..|||+|-+|-
T Consensus 284 eR~~aLv~AGvD~iviD~ahGh----s~~v~~~i~~ik~~~-p~~~via-GNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 284 DRLKLLAEAGLDVVVLDSSQGN----SVYQIEFIKWIKQTY-PKIDVIA-GNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHTTCCEEEECCSCCC----SHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhcCCcEEEEeccccc----cHHHHHHHHHHHhhC-CcceEEe-ccccCHHHHHHHHHcCCCEEeecC
Confidence 4478889999999999764332 233466777887765 4687776 889999988888889999997763
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.093 Score=49.66 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 130 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISY 130 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35577899999998665332111111 122355555666667899988555445555544 4458999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 131 ~~~---s~~~l~~~f~~v 145 (315)
T 3na8_A 131 WKL---NEAEVFQHYRAV 145 (315)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345554444443
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.13 Score=48.19 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=56.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 31 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 110 (294)
T 3b4u_A 31 RRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYF 110 (294)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCC
Confidence 45678999999997654421111111 22345555566666899986555444455543 33479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~e 334 (370)
. ...++++.++++.+.+.
T Consensus 111 ~--~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 111 K--NVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp C--SCCHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHh
Confidence 3 01456666565555443
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.59 Score=44.39 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=63.2
Q ss_pred CCceEEEEee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccc
Q 017492 122 PGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (370)
Q Consensus 122 ~~~~~~Qly~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (370)
.-+.++-|-. ..+.+...++++++++.|++.|.++-.... +.. .
T Consensus 209 ~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~--------------~~~--------~-------- 258 (338)
T 1z41_A 209 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV--------------HAD--------I-------- 258 (338)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSS--------------CCC--------C--------
T ss_pred CCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccc--------------cCC--------C--------
Confidence 3456666654 234566778888999999999987632100 000 0
Q ss_pred cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEc
Q 017492 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs 253 (370)
+ ..+.+.++.++++++.+++||+.-+. .+++++..+++.| +|.|.++
T Consensus 259 ----------~-~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iG 307 (338)
T 1z41_A 259 ----------N-VFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIG 307 (338)
T ss_dssp ----------C-CCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred ----------C-CCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeec
Confidence 0 01224678899999999999998664 5899999999999 9999883
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.13 Score=48.74 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=54.7
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 51 ~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (314)
T 3qze_A 51 DFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYN 130 (314)
T ss_dssp HHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 45678999999996653321111111 22345555666667899998555555566554 33589999999999876
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.++++.+
T Consensus 131 ~~---s~~~l~~~f~~v 144 (314)
T 3qze_A 131 KP---TQEGMYQHFRHI 144 (314)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 32 345555444444
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.13 Score=48.46 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||+|++-.|+++
T Consensus 43 ~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 122 (304)
T 3l21_A 43 NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYS 122 (304)
T ss_dssp HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4567899999999765442111111 122355555666667899998655555565544 33489999999999876
Q ss_pred HHHhcCHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEM 330 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~ 330 (370)
.. .++++.++++.
T Consensus 123 ~~---s~~~l~~~f~~ 135 (304)
T 3l21_A 123 KP---PQRGLQAHFTA 135 (304)
T ss_dssp CC---CHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHH
Confidence 32 34544444333
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.14 Score=48.72 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||+|++-.|+++
T Consensus 62 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~ 141 (332)
T 2r8w_A 62 ARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYT 141 (332)
T ss_dssp HHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4567889999999765442111111 122355555666667899986444444444443 33489999999999875
Q ss_pred HHHhcCHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~ 332 (370)
.. .++++.++++.+.
T Consensus 142 ~~---s~~~l~~~f~~VA 156 (332)
T 2r8w_A 142 PL---TQEEAYHHFAAVA 156 (332)
T ss_dssp CC---CHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHH
Confidence 32 3455554544443
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.19 Score=46.87 Aligned_cols=90 Identities=18% Similarity=0.321 Sum_probs=54.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++||++.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35577899999999765442111111 122345555666667899986555444455443 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~i 121 (289)
T 2yxg_A 107 NKP---TQEGLRKHFGKV 121 (289)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345554444443
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.24 Score=48.81 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCh-HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 133 KDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 133 ~d~-~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
.+. +.+.+.++++.+.||+++-+.++. +..
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-------------------------------------------------~~~ 213 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-------------------------------------------------AAR 213 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-------------------------------------------------CHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-------------------------------------------------CHH
Confidence 456 667777788888899988776431 011
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCC-Cc
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~-ip 282 (370)
...+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.=- ..+..++.+.++++.+ + +|
T Consensus 214 ~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~~iP 283 (428)
T 3bjs_A 214 VDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLEEP--------FACNDFASYREVAKIT--PLVP 283 (428)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEECC--------SCTTCHHHHHHHTTTC--SSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCccCHHHHHHHHHhC--CCCc
Confidence 2466788888886 57887764 2456554 55667888877410 1123566777776655 6 99
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 283 VFLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
|++++.+.+..++.+++..| +|.|++-
T Consensus 284 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 284 IAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp EEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred EEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 99999999999999999988 7888873
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.093 Score=49.30 Aligned_cols=109 Identities=17% Similarity=0.062 Sum_probs=65.9
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhh-hhcCCCCccccccccccccCccccccchhh
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIK-NRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (370)
-|.++.+...-+.+...+++++++++| ++++.++- ....+.. -|.+ ....++. . .......+.
T Consensus 161 ~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~-~~~~~~~-i~~~~~~~~~~~----~---------~~~gG~sg~ 225 (314)
T 2e6f_A 161 LPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN-SVGNGLV-IDAESESVVIKP----K---------QGFGGLGGK 225 (314)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC-CEEEEEC-EETTTTEESCCG----G---------GGEEEEESG
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC-CCCcccc-ccCCCCCccccc----C---------cCCCccCcc
Confidence 467888776556777778889999999 99998752 1100000 0000 0000000 0 000000000
Q ss_pred HHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 201 AAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
...+..++.++++++.+ ++||+.-+ +.+.+++..++.+|||+|.+.
T Consensus 226 -------~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 226 -------YILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG 273 (314)
T ss_dssp -------GGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred -------cccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 01123578899999998 99988754 688999999999999999884
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.02 E-value=3.6 Score=38.37 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=103.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ + ++.+.+.||.. +... -+.+...- ..+-+.
T Consensus 20 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 98 (304)
T 3l21_A 20 LTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAH 98 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHH
T ss_pred EEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHH
Confidence 35566777433333333444677777778876443 3 23455666532 2212 24555542 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. .|..- . | ..+-..+..
T Consensus 99 ai~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------s~~~l~~~f 133 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVV--TPYYS----------K-P--------------------------------PQRGLQAHF 133 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCCC----------C-C--------------------------------CHHHHHHHH
Confidence 7888999999999999875 34320 0 0 000123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+.. +-+|.-+. ..+..+.++.. .++..|+ +|
T Consensus 134 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~--~~~f~v~-~G-- 198 (304)
T 3l21_A 134 TAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDAK----------ADLHSGAQIMA--DTGLAYY-SG-- 198 (304)
T ss_dssp HHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHH--HHCCEEE-ES--
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEECCC----------CCHHHHHHHhc--CCCeEEE-eC--
Confidence 7777778999998764 5677777666532 33343321 12333333332 2256554 45
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
+...++.++.+||+++..+.+-+
T Consensus 199 -~d~~~l~~l~~Ga~G~is~~~n~ 221 (304)
T 3l21_A 199 -DDALNLPWLRMGATGFISVIAHL 221 (304)
T ss_dssp -SGGGHHHHHHHTCCEEEESTHHH
T ss_pred -chHHHHHHHHcCCCEEEecHHhh
Confidence 23446788999999998887544
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=2.9 Score=38.53 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=30.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++|||.|.+-. .+ .+...+|.+.+ ++|+|.-|
T Consensus 165 ~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (275)
T 1o66_A 165 NDAKAHDDAGAAVVLMEC---------VL-AELAKKVTETV--SCPTIGIG 203 (275)
T ss_dssp HHHHHHHHTTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEEC
Confidence 568889999999999832 33 35677888887 79999866
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=93.98 E-value=4 Score=38.05 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=101.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccC-C-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ +.+.+.||-. +.. + -+.+..+- ..+-+.
T Consensus 16 ~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ 94 (303)
T 2wkj_A 16 MAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAE 94 (303)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHH
T ss_pred EEeeEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 35556676433323333334666666778875443 32 3456666532 221 2 24555542 335566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|..- . | + .+-..+..
T Consensus 95 ai~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f 129 (303)
T 2wkj_A 95 SQQLAASAKRYGFDAVSAV--TPFYY----------P-F---S-----------------------------FEEHCDHY 129 (303)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEec--CCCCC----------C-C---C-----------------------------HHHHHHHH
Confidence 7788899999999999875 34320 0 0 0 00123345
Q ss_pred HHHHHhcC-CcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTITK-LPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~~-~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.|.+.++ +||++=.+ ++++...++.+. .+-+|.-+. ..+..+.++.+. .++..|+ +|.
T Consensus 130 ~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~----------gd~~~~~~~~~~-~~~f~v~-~G~ 197 (303)
T 2wkj_A 130 RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTS----------GDLYQMEQIRRE-HPDLVLY-NGY 197 (303)
T ss_dssp HHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECC----------CCHHHHHHHHHH-CTTCEEE-ECC
T ss_pred HHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEeCCC----------CCHHHHHHHHHh-CCCeEEE-eCc
Confidence 66667777 99998653 567777766653 233444332 123344455444 2345444 342
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
...++.++.+|++++..+.+-+
T Consensus 198 ---d~~~~~~l~~G~~G~is~~an~ 219 (303)
T 2wkj_A 198 ---DNIFASGLLAGADGGIGSTYNI 219 (303)
T ss_dssp ---GGGHHHHHHHTCCEEEETTHHH
T ss_pred ---HHHHHHHHHCCCCEEEeCHHHh
Confidence 2447788999999999997544
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.24 Score=46.95 Aligned_cols=104 Identities=17% Similarity=0.073 Sum_probs=63.0
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.+-..-+.+.+.++++.++++|+++|.++-... + |. +.+ .+. . .. . .+...+.
T Consensus 212 ~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~--~-~~-~~~----~~~-~--~~-------~--~gg~~g~-- 269 (336)
T 1f76_A 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTL--D-RS-LVQ----GMK-N--CD-------Q--TGGLSGR-- 269 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBC--C-CT-TST----TST-T--TT-------C--SSEEEEG--
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcc--c-cc-ccc----ccc-c--cc-------c--CCCcCCc--
Confidence 35666654434455667788889999999998863211 1 11 110 000 0 00 0 0000000
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
......++.++++++.+ ++||+.= ++.+.+++.+++++|||+|.++
T Consensus 270 -----~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 270 -----PLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp -----GGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred -----hhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence 00123567899999988 8998865 4789999999999999999884
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.75 Score=43.80 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCceEEEEeec------CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccc
Q 017492 122 PGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (370)
Q Consensus 122 ~~~~~~Qly~~------~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (370)
.-+.++-|-+. .+.+...+++++++++|++.|.++..... +...
T Consensus 209 ~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~--------------~~~~---------------- 258 (340)
T 3gr7_A 209 DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIV--------------PARM---------------- 258 (340)
T ss_dssp CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSS--------------CCCC----------------
T ss_pred CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcc--------------CCCC----------------
Confidence 34566666532 23566778889999999999887632100 0000
Q ss_pred cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEEc
Q 017492 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~vs 253 (370)
. ..+.+.++.++++++.+++||+.-+ +.++++|+.+++.| +|.|.+.
T Consensus 259 ----------~-~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG 307 (340)
T 3gr7_A 259 ----------N-VYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLG 307 (340)
T ss_dssp ----------C-CCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred ----------C-CCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence 0 0123467889999999999998866 46899999999999 9999883
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.17 Score=48.50 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=53.4
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|++.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ |-.+|||+|++-.|++
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35577899999999765432111111 122345555666667899987555444455543 3448999999999987
Q ss_pred HHHHhcCHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~ 330 (370)
+.. .++++.++++.
T Consensus 138 ~~~---s~~~l~~~f~~ 151 (343)
T 2v9d_A 138 WKV---SEANLIRYFEQ 151 (343)
T ss_dssp SCC---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 532 34444444433
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.54 Score=45.54 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-+.+.+...+.. .+++. + . ++. ..+...
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~----~~~~~-~-----g--------------g~~-------~~~~~~ 184 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSA----LQHVT-R-----R--------------SMS-------AEAIEL 184 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTE----EECCB-T-----T--------------BCC-------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccc----ccccc-c-----C--------------Ccc-------hhhHHH
Confidence 366777777888888999999987654321100 00000 0 0 000 001223
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.- ...+..++.+.++++.+ ++||+
T Consensus 185 ~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~ipIa 254 (392)
T 2poz_A 185 AYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEE--------PCDPFDNGALKVISEQI--PLPIA 254 (392)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEE
Confidence 567899999987 58888874 2466664 4455667776631 01223577888888876 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..++.+++..| +|.|++-
T Consensus 255 ~dE~~~~~~~~~~~i~~~~~d~v~ik 280 (392)
T 2poz_A 255 VGERVYTRFGFRKIFELQACGIIQPD 280 (392)
T ss_dssp ECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999988 8999873
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.17 Score=47.77 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 36 ~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~ 115 (309)
T 3fkr_A 36 DFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHG 115 (309)
T ss_dssp HHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBT
T ss_pred HHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 4567899999999665332111111 122355555666667899997644444444443 33489999999999762
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
....-.++++.++++.+
T Consensus 116 ~~~~~s~~~l~~~f~~v 132 (309)
T 3fkr_A 116 ATFRVPEAQIFEFYARV 132 (309)
T ss_dssp TTBCCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 10011355555444444
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.88 E-value=1 Score=43.67 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+.+.++..+++++ =.+.+.+.+..+.+.|+|.+.|... -...+..|..+.+ ...|||.+-|..|-+
T Consensus 103 ~~~L~~~~~~~Gi~~~-stpfD~~svd~l~~~~vd~~KIgS~-------~~~N~pLL~~va~---~gKPViLStGmaTl~ 171 (385)
T 1vli_A 103 ILPLLDYCREKQVIFL-STVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVAR---LNRPMIFSTAGAEIS 171 (385)
T ss_dssp HHHHHHHHHHTTCEEE-CBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCHH
T ss_pred HHHHHHHHHHcCCcEE-EccCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCeEEEECCCCCHH
Confidence 4456677777788875 5567889999999999999999531 1234556666554 378999999999999
Q ss_pred HHHHHHH----hCCCEEEE
Q 017492 294 DVFKALA----LGASGIFI 308 (370)
Q Consensus 294 dv~kala----lGAd~V~i 308 (370)
++..|+. .|.+-|.+
T Consensus 172 Ei~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 172 DVHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHCCCCcEEE
Confidence 9887765 46633333
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.19 Score=46.96 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=53.9
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 27 IEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp HHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35567889999999765432111111 122345555666667899987555444455543 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~v 121 (294)
T 2ehh_A 107 NKP---TQRGLYEHFKTV 121 (294)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345544444433
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.095 Score=47.71 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-H---------HHHHHHHhCCCEEEEcHH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T---------DVFKALALGASGIFIGRP 311 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~---------dv~kalalGAd~V~igr~ 311 (370)
..+.|.++++.+ ..+ +.++++..+ ..+++++|||+-. . .+.+++..|||.+.+||+
T Consensus 152 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 217 (246)
T 2yyu_A 152 AKESGLDGVVCS------------ANE-AAFIKERCG-ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRS 217 (246)
T ss_dssp HHHHTCCEEECC------------HHH-HHHHHHHHC-TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHH
T ss_pred HHHhCCCEEEeC------------HHH-HHHHHHhcC-CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHh
Confidence 457888887542 234 666666653 3459999999842 2 377778899999999999
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
++.
T Consensus 218 I~~ 220 (246)
T 2yyu_A 218 LTR 220 (246)
T ss_dssp HHT
T ss_pred hcC
Confidence 874
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.82 E-value=4.6 Score=38.19 Aligned_cols=183 Identities=14% Similarity=0.013 Sum_probs=102.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++-|+.-.+-.+.+.-..+++-..+.|+...+ ++ ..+.+.+|-. +... -+.+...- ..+-+..
T Consensus 40 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~ea 118 (332)
T 2r8w_A 40 AFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEA 118 (332)
T ss_dssp ECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHH
T ss_pred EEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 4456666432223333334666666677875543 32 3455666532 1222 34566653 3455667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 119 i~la~~A~~~Gadavlv~--~P~Y~----------~-~---s-----------------------------~~~l~~~f~ 153 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLA--PVSYT----------P-L---T-----------------------------QEEAYHHFA 153 (332)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788899999999999874 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ ++++...++.+. .+-+|.-+. |- ....+..+.++.+..+++..|+ +|
T Consensus 154 ~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdss-gd-----~~~~~~~~~~l~~~~~~~f~v~-~G--- 223 (332)
T 2r8w_A 154 AVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPL-PA-----DADYAGELARLRPKLSDDFAIG-YS--- 223 (332)
T ss_dssp HHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECC-CT-----TCCHHHHHHHHTTTSCTTCEEE-EC---
T ss_pred HHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCC-CC-----chhHHHHHHHHHHhcCCCEEEE-eC---
Confidence 677778999998653 567777776653 233443322 10 0001445555554443344444 44
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
....++.++.+|++++..+.+
T Consensus 224 ~D~~~l~~l~~G~~G~is~~a 244 (332)
T 2r8w_A 224 GDWGCTDATLAGGDTWYSVVA 244 (332)
T ss_dssp CHHHHHHHHHTTCSEEEESGG
T ss_pred chHHHHHHHHCCCCEEEeCHH
Confidence 345678889999999999864
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=4.3 Score=37.75 Aligned_cols=177 Identities=14% Similarity=0.171 Sum_probs=104.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCCC---ceEEEEeecCChHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGPG---IRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~~---~~~~Qly~~~d~~~ 137 (370)
|.++-|+ -.+-.+.+.-..+.+-..+.|+...+ + ++.+.+.||.. +...+ +.+...- ..+-+.
T Consensus 14 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~~ 91 (301)
T 3m5v_A 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATHE 91 (301)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHHH
T ss_pred EeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHHH
Confidence 4556666 33333444444677777778876544 2 23445666532 12122 4455542 345677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|..- . | ..+-..+..
T Consensus 92 ai~la~~a~~~Gadavlv~--~P~y~----------~-~--------------------------------s~~~l~~~f 126 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSV--APYYN----------K-P--------------------------------TQQGLYEHY 126 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCC----------C-C--------------------------------CHHHHHHHH
Confidence 7788899999999999875 34320 0 0 000123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc--CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a--G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+.. ++..| .+|.
T Consensus 127 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdss----------gd~~~~~~~~~~~-~~f~v-~~G~ 194 (301)
T 3m5v_A 127 KAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEAS----------GNIDKCVDLLAHE-PRMML-ISGE 194 (301)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------SCHHHHHHHHHHC-TTSEE-EECC
T ss_pred HHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhC-CCeEE-EEcc
Confidence 7777778999998764 567777777665 455555432 1344555555555 45655 3442
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 195 ---d~~~~~~l~~G~~G~is~~~ 214 (301)
T 3m5v_A 195 ---DAINYPILSNGGKGVISVTS 214 (301)
T ss_dssp ---GGGHHHHHHTTCCEEEESGG
T ss_pred ---HHHHHHHHHcCCCEEEehHH
Confidence 23467889999999998874
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.44 Score=46.43 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=65.9
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ +++|.+.. ..+.+++ +.+.+.|++.|.- ...+..++.+.++++.+ ++||
T Consensus 203 ~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPI 272 (410)
T 2gl5_A 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEE--------PIHPLNSDNMQKVSRST--TIPI 272 (410)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------SSCSSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCE
Confidence 3567899999987 58888874 2466664 4455667776641 01233577888888876 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..++.+++..| +|.|++-
T Consensus 273 a~dE~~~~~~~~~~~i~~~~~d~v~ik 299 (410)
T 2gl5_A 273 ATGERSYTRWGYRELLEKQSIAVAQPD 299 (410)
T ss_dssp EECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred EecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999988 7999873
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=2.1 Score=40.79 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=102.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccC-C-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ ..+.+.||-. +.. + -+.+..+- ..+-+.
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 46667777433323333334666666678875433 33 3456666532 121 2 34555543 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. .|..- . | + .+-..+..
T Consensus 115 ai~la~~A~~~Gadavlv~--~P~Y~----------~-~---s-----------------------------~~~l~~~f 149 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVI--NPYYW----------K-V---S-----------------------------EANLIRYF 149 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCSSS----------C-C---C-----------------------------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHH
Confidence 7788999999999999875 34320 0 0 0 00123345
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEE
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFL 285 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~ 285 (370)
+.|.+.+++||++=.+ ++++...++. +. .+-+|.-+. ..+..+.++.+..+ ++..| .
T Consensus 150 ~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~~~~f~v-~ 218 (343)
T 2v9d_A 150 EQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI----------DSVAHLRSMIHTVKGAHPHFTV-L 218 (343)
T ss_dssp HHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHHHHCTTCEE-E
T ss_pred HHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCCEEE-E
Confidence 6677778999998664 5677777776 53 244444322 12334444444433 35554 4
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+| ....++.++.+|++++..+.+
T Consensus 219 ~G---~D~~~l~~l~~Ga~G~is~~a 241 (343)
T 2v9d_A 219 CG---YDDHLFNTLLLGGDGAISASG 241 (343)
T ss_dssp ES---SGGGHHHHHHTTCCEECCGGG
T ss_pred EC---cHHHHHHHHHCCCCEEEeCHH
Confidence 44 224577889999999998874
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.22 Score=47.07 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=52.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++|
T Consensus 39 ~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 118 (318)
T 3qfe_A 39 AYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYF 118 (318)
T ss_dssp HHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC-
T ss_pred HHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 4567789999999765432111111 122355555666667899987555445555544 33489999999999766
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.- -..++++.++++.+
T Consensus 119 ~k-p~~~~~l~~~f~~i 134 (318)
T 3qfe_A 119 GK-ATTPPVIKSFFDDV 134 (318)
T ss_dssp ---CCCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHH
Confidence 30 01245554444443
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.17 Score=47.63 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=52.8
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ |-.+|||++++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35577899999999765432111111 122345555666667899986555444455543 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLE 329 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~ 329 (370)
+.. .++++.++++
T Consensus 119 ~~~---s~~~l~~~f~ 131 (306)
T 1o5k_A 119 NKP---TQEGLYQHYK 131 (306)
T ss_dssp SCC---CHHHHHHHHH
T ss_pred CCC---CHHHHHHHHH
Confidence 532 3444444433
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.97 Score=41.76 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH-H---HHHHHHccCCCc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIP 282 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~ip 282 (370)
..+...++++++. +-|+.+=+.-+.-.|+.+.++|+|.|.++...+. ..|..+-+++. + ..+++.. .+.|
T Consensus 15 ~~t~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~~ 92 (275)
T 3vav_A 15 AVTVPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRAL 92 (275)
T ss_dssp CCCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSSE
T ss_pred CcCHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCCC
Confidence 3466677776654 5688888888999999999999999966433221 12444555543 3 3333332 3589
Q ss_pred EEEec---CCCCHHHHH----HHHHhCCCEEEEc
Q 017492 283 VFLDG---GVRRGTDVF----KALALGASGIFIG 309 (370)
Q Consensus 283 vi~~G---GI~~~~dv~----kalalGAd~V~ig 309 (370)
|++|- |..++++++ +.+..||++|-+=
T Consensus 93 vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 93 IVADLPFGTYGTPADAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp EEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 99985 466888875 4566899999875
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.19 Score=47.12 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=54.5
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 27 VDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35577899999998665332111111 122345555666667899886555444455443 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~ 332 (370)
+.. .++++.++++.+.
T Consensus 107 ~~~---s~~~l~~~f~~va 122 (297)
T 2rfg_A 107 NRP---SQEGLYQHFKMVH 122 (297)
T ss_dssp TCC---CHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHH
Confidence 632 4555555554443
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.27 Score=45.43 Aligned_cols=40 Identities=30% Similarity=0.273 Sum_probs=34.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++||++.+ +.++++++.+ .|+|+++|++
T Consensus 190 ~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 46789999999999999986 4679999997 9999999954
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=1 Score=43.16 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=65.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++|.. +.+.|++.|. + ...+..++.+.++++.. .+||+
T Consensus 171 d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa 240 (367)
T 3dg3_A 171 DTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAE-------E-LCPADDVLSRRRLVGQL--DMPFI 240 (367)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEE-------S-CSCTTSHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEE
Confidence 466788888887 57787764 246666543 4456776663 1 01123466778887776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~~l 313 (370)
+++.+.+..|+.+++..| +|.|++--...
T Consensus 241 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 270 (367)
T 3dg3_A 241 ADESVPTPADVTREVLGGSATAISIKTART 270 (367)
T ss_dssp ECTTCSSHHHHHHHHHHTSCSEEEECHHHH
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEEeehhhh
Confidence 999999999999999988 89999965443
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.59 Score=40.73 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=37.9
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.|+.++++++..++|+++-+..+++++..+.++|+|++.++.
T Consensus 148 ~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 148 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred CcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 35788899999888999999887778999999999999999853
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.83 Score=40.28 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=37.7
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.|+.++++++..++||++=|..+++++..+.++|+|+|.++.
T Consensus 150 ~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 193 (221)
T 1yad_A 150 GRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMS 193 (221)
T ss_dssp -CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESH
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhH
Confidence 35788999999888999998776699999999999999999853
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.19 Score=46.96 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=52.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal----alGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++.. .+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (292)
T 2ojp_A 29 DYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYN 108 (292)
T ss_dssp HHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 4567889999999765442111111 12234555566666789998655554555555432 379999999999875
Q ss_pred HHHhcCHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLE 329 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~ 329 (370)
.. .++++.++++
T Consensus 109 ~~---s~~~l~~~f~ 120 (292)
T 2ojp_A 109 RP---SQEGLYQHFK 120 (292)
T ss_dssp CC---CHHHHHHHHH
T ss_pred CC---CHHHHHHHHH
Confidence 32 3444444433
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.11 Score=49.23 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=57.7
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|- +-.++++ +-.+|||+|++-.|+++
T Consensus 40 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~ 118 (316)
T 3e96_A 40 DRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHP 118 (316)
T ss_dssp HHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCS
T ss_pred HHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4467789999998665332111111 1223555566666678999987674 6666655 34589999999999864
Q ss_pred HHHhcCHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~e 334 (370)
. -.++++.++++.+.+.
T Consensus 119 ~---~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 119 Y---VTAGGVYAYFRDIIEA 135 (316)
T ss_dssp C---CCHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHh
Confidence 2 2466666666655544
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.64 E-value=1.2 Score=42.70 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=86.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh----cCCCCccccccccccccCccccccchhhHHHhhhc
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR----FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (370)
..+.+...++++.|+++|++++=.-.= ..+.+-.. |+.+. ......+...
T Consensus 31 ~gs~e~a~~li~~ak~aGadavKfq~~------k~~tl~s~~~~~fq~~~------------------~~~~~y~~~~-- 84 (349)
T 2wqp_A 31 EGSLKTAFEMVDAAYNAGAEVVKHQTH------IVEDEMSDEAKQVIPGN------------------ADVSIYEIME-- 84 (349)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEEC------CHHHHCCGGGGGCCCTT------------------CSSCHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHhCCCEEeeeec------ccccccCcchhccccCC------------------CCccHHHHHH--
Confidence 457899999999999999998754211 11211000 11000 0000011111
Q ss_pred CCCCccHHH---HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 208 IDRSLSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 208 ~d~~~~~~~---i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
...+.|+. +.+.++..+++++ =.+.+.+.+..+.+.|+|.+.|... -...+..|.++.+ ...|||
T Consensus 85 -~~~l~~e~~~~L~~~~~~~Gi~~~-st~~d~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~---~gkPvi 152 (349)
T 2wqp_A 85 -RCALNEEDEIKLKEYVESKGMIFI-STLFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS---FGKPII 152 (349)
T ss_dssp -HHCCCHHHHHHHHHHHHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT---TCSCEE
T ss_pred -HhCCCHHHHHHHHHHHHHhCCeEE-EeeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCeEE
Confidence 11234554 5555556688875 5578899999999999999999532 1234556666654 378999
Q ss_pred EecCCCCHHHHHHHHH----hCCCEEEE
Q 017492 285 LDGGVRRGTDVFKALA----LGASGIFI 308 (370)
Q Consensus 285 ~~GGI~~~~dv~kala----lGAd~V~i 308 (370)
.+-|..|-+++..|+. .|.+.+.+
T Consensus 153 LstGmat~~Ei~~Ave~i~~~G~~iiLl 180 (349)
T 2wqp_A 153 LSTGMNSIESIKKSVEIIREAGVPYALL 180 (349)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999887764 46665554
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.66 Score=44.68 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=62.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++|.. +.+.|++.|. + ...+..++.+.++++.. .+||+
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa 252 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFE-------E-PLWYDDVTSHARLARNT--SIPIA 252 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------S-CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEE-------C-CCCchhHHHHHHHHhhc--CCCEE
Confidence 466789999987 57888774 246666543 3345555553 1 01123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++.-+.+..|+.+++..| +|.|++-
T Consensus 253 ~dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 253 LGEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred eCCCccCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999988 7998874
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.47 Score=46.77 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.+.++++.+.||+++-|.++. +....
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~-------------------------------------------------~~~~d 228 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGA-------------------------------------------------NVQDD 228 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS-------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCC-------------------------------------------------CHHHH
Confidence 66777778888888999998876531 01124
Q ss_pred HHHHHHHHHhc--CCcEEEEe--cCCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ ++++.+.. ..+.+++.. +.+.|++.|.- ...+..++.+.++++.+. .+||++
T Consensus 229 ~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~-~iPIa~ 299 (441)
T 2hxt_A 229 IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEE--------PTSPDDVLGHAAIRQGIT-PVPVST 299 (441)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEEC--------CSCTTCHHHHHHHHHHHT-TSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeC--------CCCHHHHHHHHHHHhhCC-CCCEEE
Confidence 56788888877 57787764 246666544 34567776531 011235677778877652 599999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++.+.+..++.+.+..| +|.|++-
T Consensus 300 dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 300 GEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 99999999999999988 7999884
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.19 Score=47.22 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=55.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccC-CCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+ ++|||+.-|=.+-.++++ +-.+|||++++-.|+
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34577899999998665432111111 122355566666677 899998555445555554 334899999999998
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l 331 (370)
++.. .++++.++++.+
T Consensus 114 y~~~---s~~~l~~~f~~v 129 (301)
T 3m5v_A 114 YNKP---TQQGLYEHYKAI 129 (301)
T ss_dssp SSCC---CHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7632 345544444443
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.15 Score=47.65 Aligned_cols=90 Identities=18% Similarity=0.351 Sum_probs=52.8
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++||++.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 27 VEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106 (292)
T ss_dssp HHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45577899999998665332111111 122345555666667899876544444444443 3448999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~i 121 (292)
T 2vc6_A 107 NKP---TQEGIYQHFKAI 121 (292)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345544444433
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.49 Score=46.19 Aligned_cols=132 Identities=20% Similarity=0.138 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++=+.++.+..+.. +. .+ . . .+...
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~------g~-~~----------------------~-~------~~~~~ 193 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYD------GH-QP----------------------S-L------EDLER 193 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTC------SB-CC----------------------C-H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccc------cc-cc----------------------c-H------HHHHH
Confidence 356777777777778899999887654421100 00 00 0 0 01123
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ .+||+
T Consensus 194 d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 263 (404)
T 4e5t_A 194 SEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEEP--------IPPEKPEDMAEVARYT--SIPVA 263 (404)
T ss_dssp HHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 567899999987 578888742 456664 45557788887520 1123567788888876 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..|+.+++..| +|.|++--
T Consensus 264 ~dE~~~~~~~~~~~i~~~a~d~v~~d~ 290 (404)
T 4e5t_A 264 TGERLCTKYEFSRVLETGAASILQMNL 290 (404)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEecCc
Confidence 999999999999999988 78888753
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.35 Score=47.30 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=87.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.||+++=+ ++++..+. + . . . .+..
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~--------~------~------------------~-~------~~~~ 162 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI--------I------D------------------T-S------RAVD 162 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC--------B------C------------------S-H------HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc--------c------c------------------c-c------hhHH
Confidence 356777777888888899999877 55432100 0 0 0 0 0112
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
.+.+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|.-- ..+..++.+.++++.. .+||
T Consensus 163 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPI 232 (405)
T 3rr1_A 163 AAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEP--------VLAEQAETYARLAAHT--HLPI 232 (405)
T ss_dssp HHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEECS--------SCCSSTHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhcC--CCCE
Confidence 2567899999987 578888742 466664 44556788777420 1122456777777665 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..|+.+++..| +|.|++-
T Consensus 233 a~dE~i~~~~~~~~~l~~~a~d~v~~d 259 (405)
T 3rr1_A 233 AAGERMFSRFDFKRVLEAGGVSILQPD 259 (405)
T ss_dssp EECTTCCSHHHHHHHHHHCCCSEECCB
T ss_pred EecCCcCCHHHHHHHHHHhCCCeEEEC
Confidence 9999999999999999987 7999884
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.5 Score=45.99 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.- ...+..++.+.++++.+ ++||
T Consensus 200 ~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPI 269 (407)
T 2o56_A 200 LGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEE--------PVMPLNPAQMKQVADKV--NIPL 269 (407)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------SSCSSSHHHHHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHHhC--CCCE
Confidence 3567899999987 58888874 2456654 4455678877641 01223577888888876 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..++.+++..| +|.|++-
T Consensus 270 a~dE~~~~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 270 AAGERIYWRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999988 8999883
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.38 Score=43.31 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEec--C----C-HHHH----HHHHHcCccEEEEccCCcc--CCCCccchHHHHHHHH
Q 017492 208 IDRSLSWKDVKWLQTITKLPILVKGV--L----T-AEDA----RIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVV 274 (370)
Q Consensus 208 ~d~~~~~~~i~~ir~~~~~Pv~vK~v--~----~-~~~a----~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i~ 274 (370)
.+.+.+.+.++++++.+++|++ |-+ . . .+++ ..+....+|++.+...||+ .+|| +.+..+.
T Consensus 98 LHG~E~~~~~~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fDW-----~~~~~~~ 171 (228)
T 4aaj_A 98 VHSNALPQTIDTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGKLHDL-----RVSSLVA 171 (228)
T ss_dssp ECSCCCHHHHHHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-------CCC-----HHHHHHH
T ss_pred cccccCHHHHHHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcCcCCh-----HHHHHhh
Confidence 3455577889999999898876 543 1 1 2333 3345568999999887765 2444 4455443
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEcHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 312 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kala-lGAd~V~igr~~ 312 (370)
. +.|++..||+ +++.|.+|+. .+..+|=+.+.+
T Consensus 172 ~----~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 172 R----KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp H----HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred h----cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence 3 4799999999 5689999998 799999998854
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.39 E-value=2.4 Score=40.47 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=114.4
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCce----eecCCCCCCHHHHhcc-C---CCceEEEEee--cCChHHHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----TLSSWSTSSVEEVAST-G---PGIRFFQLYV--YKDRNVVAQ 140 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~----~~s~~~~~~~eei~~~-~---~~~~~~Qly~--~~d~~~~~~ 140 (370)
..|++||=+|..--.+-+.-..+.++|+++|... .+==+ +...+++... . ....+++.|. .-..+....
T Consensus 4 ~~~~IIAEig~NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQ-t~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~ 82 (350)
T 3g8r_A 4 SKPLFIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQ-YRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQK 82 (350)
T ss_dssp -CCEEEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEE-ECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHH
T ss_pred CCCEEEEEECCCccCcHHHHHHHHHHHHHhCCcccCCeeEEcc-ccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHH
Confidence 4699999987642211222235778999998741 11101 1223443211 0 1112233331 134667777
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC-ccHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDVKW 219 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i~~ 219 (370)
+.+.+++.|...+.=-+| .+.-|+-..+.+|- +.. ...+ ..+..|++
T Consensus 83 L~~~~~~~Gi~~~st~fD-----~~svd~l~~~~v~~-~KI--------------------------~S~~~~N~pLL~~ 130 (350)
T 3g8r_A 83 LVAEMKANGFKAICTPFD-----EESVDLIEAHGIEI-IKI--------------------------ASCSFTDWPLLER 130 (350)
T ss_dssp HHHHHHHTTCEEEEEECS-----HHHHHHHHHTTCCE-EEE--------------------------CSSSTTCHHHHHH
T ss_pred HHHHHHHcCCcEEeccCC-----HHHHHHHHHcCCCE-EEE--------------------------CcccccCHHHHHH
Confidence 888889999876542222 22223222222111 000 0111 25667888
Q ss_pred HHHhcCCcEEEEec-CCHHHHHHH----HHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEEEe----cC
Q 017492 220 LQTITKLPILVKGV-LTAEDARIA----VQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLD----GG 288 (370)
Q Consensus 220 ir~~~~~Pv~vK~v-~~~~~a~~a----~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi~~----GG 288 (370)
+.+ +++||++|.. .+.++...+ .+.|.+.+.+ |.-+.....+ ..+..++.+++.. +.+||-.+ |+
T Consensus 131 va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLl--hC~s~YPt~~~~~nL~aI~~Lk~~f-p~lpVG~SdHt~g~ 206 (350)
T 3g8r_A 131 IAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIM--HCVAEYPTPDDHLHLARIKTLRQQY-AGVRIGYSTHEDPD 206 (350)
T ss_dssp HHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEE--ECCCCSSCCGGGCCTTHHHHHHHHC-TTSEEEEEECCCSS
T ss_pred HHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--ecCCCCCCCcccCCHHHHHHHHHHC-CCCCEEcCCCCCCC
Confidence 765 6999999965 566664443 3467764443 2211111111 1334666666654 25888766 33
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHcCCC
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G~~ 345 (370)
. . .-+..|+++||+.+ =+-|-..- ..|.++ --+-++.|.++++..-..+|..
T Consensus 207 ~-~-~~~~AAvAlGA~vI--EkH~tldr-~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 207 L-M-EPIMLAVAQGATVF--EKHVGLPT-DQYGINNYSANPEQVRRWLAAAARALAMLGDG 262 (350)
T ss_dssp C-C-HHHHHHHHTTCCEE--EEEBCCCB-TTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT
T ss_pred c-c-HHHHHHHHcCCCEE--EEecCccc-CCCCcccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 2 2 23357899999743 32111000 011100 0123456666777777777753
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.28 Score=45.64 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=57.3
Q ss_pred HhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc--------CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 222 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 222 ~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+..+.|+++ .+...+.++.+.++|+++|.+.. .+|.. .....+.+.++++.. ++|+++..++.+.+
T Consensus 18 ~~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~ 91 (297)
T 2zbt_A 18 EMFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFV 91 (297)
T ss_dssp GGGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHH
T ss_pred HHhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHH
Confidence 344667775 45568889999999999998721 11110 122456677776655 79999988888888
Q ss_pred HHHHHHHhCCCEE
Q 017492 294 DVFKALALGASGI 306 (370)
Q Consensus 294 dv~kalalGAd~V 306 (370)
++..++++|||+|
T Consensus 92 ~~~~~~~aGad~v 104 (297)
T 2zbt_A 92 EAMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHCCCCEE
Confidence 8888999999999
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.22 Score=46.82 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=54.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 42 ~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 121 (307)
T 3s5o_A 42 HKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYY 121 (307)
T ss_dssp HHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred HHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 4456789999999765432111111 122345555666667899887545445455443 44589999999999876
Q ss_pred HHHhcCHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~ 332 (370)
.. .-.++++.++++.+.
T Consensus 122 ~~-~~s~~~l~~~f~~ia 138 (307)
T 3s5o_A 122 RG-RMSSAALIHHYTKVA 138 (307)
T ss_dssp GG-GCCHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHH
Confidence 31 013555555554443
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.17 Score=46.52 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=35.7
Q ss_pred cHHHHHHHHH-hcC-CcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQT-ITK-LPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~-~~~-~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.++.+++ ..+ +||++-+ +.+++|+..+++.|+|+|.|..
T Consensus 164 ~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 164 TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4667899998 667 9999864 6899999999999999998843
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.15 Score=48.25 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=54.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.=|= +-.++++ +-.+|||++++-.|+++
T Consensus 40 ~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~ 118 (314)
T 3d0c_A 40 EFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHP 118 (314)
T ss_dssp HHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCS
T ss_pred HHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4567899999988654332111111 1223455556666678999864443 5455544 33479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 119 ~~---s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 119 YI---TDAGAVEYYRNIIE 134 (314)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 32 45666555555443
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.41 Score=45.20 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCcEEEEecCC--------HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 215 KDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~--------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.++++++.++.|+.+-...+ .+.++.+.++|+|.|.++ +|. + .+.+..+++. .++++.
T Consensus 57 ~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~--~g~------p-~~~~~~l~~~---gi~vi~- 123 (328)
T 2gjl_A 57 AEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETA--GND------P-GEHIAEFRRH---GVKVIH- 123 (328)
T ss_dssp HHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEE--ESC------C-HHHHHHHHHT---TCEEEE-
T ss_pred HHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEc--CCC------c-HHHHHHHHHc---CCCEEe-
Confidence 457888887788887766544 256888999999999884 221 2 3455555443 578885
Q ss_pred cCCCCHHHHHHHHHhCCCEEEE
Q 017492 287 GGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+.+++.++...|||++.+
T Consensus 124 -~v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 124 -KCTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp -EESSHHHHHHHHHTTCSEEEE
T ss_pred -eCCCHHHHHHHHHcCCCEEEE
Confidence 488999999999999999998
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.8 Score=44.00 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++=+.++. ++..
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~KvG~-------------------------------------------------~~~~ 169 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKVGG-------------------------------------------------SKEL 169 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecC-------------------------------------------------CHHH
Confidence 466777777777778899987665431 1112
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 170 d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa 239 (368)
T 3q45_A 170 DVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCEE--------PVSRNLYTALPKIRQAC--RIPIM 239 (368)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEEC--------CBCGGGGGGHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEEC--------CCChhHHHHHHHHHhhC--CCCEE
Confidence 466788999887 57787774 2456654 4455677777741 01122455677777765 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..|+.+++..| +|.|++--
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 266 (368)
T 3q45_A 240 ADESCCNSFDAERLIQIQACDSFNLKL 266 (368)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred EcCCcCCHHHHHHHHHcCCCCeEEech
Confidence 999999999999999987 79998864
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.31 Score=44.58 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++++|+.+++|+.+.. +.++++++.+.+ ++|+++|+.
T Consensus 188 ~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS 228 (252)
T 3tha_A 188 QDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGT 228 (252)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECH
T ss_pred HHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECH
Confidence 4578999999999999985 579999998876 699999953
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.24 Score=49.54 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.+..+.++|+|.|.+....|. ....++.+..+++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence 46788999999999999543221 1235677888888763 589887 77899999999999999999984
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=93.28 E-value=5.3 Score=37.29 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=100.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ + +..+.+.||-. +. .+ -+.+...- ..+-+.
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 91 (309)
T 3fkr_A 13 FPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQV 91 (309)
T ss_dssp CCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHH
Confidence 45566777533333333334666666777875333 2 33456666532 22 12 35565543 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. .|..... +. | ..+-..+..
T Consensus 92 ai~la~~A~~~Gadavlv~--~Pyy~~~-------~~-~--------------------------------s~~~l~~~f 129 (309)
T 3fkr_A 92 CAARSLRAQQLGAAMVMAM--PPYHGAT-------FR-V--------------------------------PEAQIFEFY 129 (309)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CSCBTTT-------BC-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCccC-------CC-C--------------------------------CHHHHHHHH
Confidence 7788999999999999874 3432100 00 0 000123445
Q ss_pred HHHHHhcCCcEEEEec------CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v------~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+ . .+-+|.... ...+..+.++.+..++.+..+.+|
T Consensus 130 ~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~pnIvgiK~~~---------~~~~~~~~~~~~~~~~~~~~~~~G-- 198 (309)
T 3fkr_A 130 ARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIEQVAYFXIET---------PGAANKLRELIRLGGDAIEGPWDG-- 198 (309)
T ss_dssp HHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHSTTEEEEEECS---------SSHHHHHHHHHHHHGGGCCEEEEC--
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCCCEEEEECCC---------cchHHHHHHHHHhcCCceeeecCC--
Confidence 6677778999988764 56777777764 2 455554321 123444555555443233223343
Q ss_pred CCHHH---HHHHHHhCCCEEEEcH
Q 017492 290 RRGTD---VFKALALGASGIFIGR 310 (370)
Q Consensus 290 ~~~~d---v~kalalGAd~V~igr 310 (370)
.| ++..+++||+++..|.
T Consensus 199 ---~d~~~l~~~l~~G~~G~i~~n 219 (309)
T 3fkr_A 199 ---EEAITLLADLHAGATGAMTGG 219 (309)
T ss_dssp ---GGGTTHHHHHHTTCCEECCCS
T ss_pred ---chHHHHHHHHHCCCcEEEEhh
Confidence 33 4578999999987664
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.62 Score=43.51 Aligned_cols=87 Identities=26% Similarity=0.279 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc--------CCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
++...+.+.+..+.++++ .....+.++.+.++|+|+|.+-+ .+|. ......+.+.++++.+ ++||+
T Consensus 9 ~~~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~---~~~~~~~~i~~I~~~~--~iPv~ 82 (305)
T 2nv1_A 9 TERVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMADPTIVEEVMNAV--SIPVM 82 (305)
T ss_dssp CHHHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCC---CCCCCHHHHHHHHHHC--SSCEE
T ss_pred cHHHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCc---ccCCCHHHHHHHHHhC--CCCEE
Confidence 455556666667778886 66778889999999999994422 1111 1123457788887766 79998
Q ss_pred EecCCCC--HHHHHHHHHhCCCEEE
Q 017492 285 LDGGVRR--GTDVFKALALGASGIF 307 (370)
Q Consensus 285 ~~GGI~~--~~dv~kalalGAd~V~ 307 (370)
+ +++. ..++..++++|||+|.
T Consensus 83 ~--k~r~g~~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 83 A--KARIGHIVEARVLEAMGVDYID 105 (305)
T ss_dssp E--EECTTCHHHHHHHHHHTCSEEE
T ss_pred e--cccccchHHHHHHHHCCCCEEE
Confidence 5 4554 6677777889999997
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.78 Score=40.99 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=57.1
Q ss_pred ceEEEEe---ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017492 124 IRFFQLY---VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (370)
Q Consensus 124 ~~~~Qly---~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (370)
|.++.+. ..-+.+...+..+.++++|++++..+ + ++.
T Consensus 117 pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~ts--t------------g~~-------------------------- 156 (225)
T 1mzh_A 117 SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTS--T------------GFA-------------------------- 156 (225)
T ss_dssp TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC--C------------SCS--------------------------
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEC--C------------CCC--------------------------
Confidence 5666662 22355567788888999999998321 1 010
Q ss_pred HHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 201 AAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+..+|+.++.+++.+ ++||+.-| +.+.+++...+++|+|.|-++
T Consensus 157 --------~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 157 --------PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp --------SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred --------CCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 0124788899999887 68877654 689999999999999976553
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.12 Score=46.90 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH----------HHHHHHHhCCCEEEEcHH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRP 311 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~----------dv~kalalGAd~V~igr~ 311 (370)
..+.|.++++.+. .+ +.++++..+ +.+++++|||+-.. .+.+++..|||.+.+||+
T Consensus 158 ~~~~G~~g~V~~~------------~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 158 TQKCGLDGVVCSA------------QE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp HHHTTCSEEECCG------------GG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred HHHcCCCeEEeCH------------HH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 5678888875532 23 555666553 46899999998531 467778899999999999
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
++.
T Consensus 224 I~~ 226 (245)
T 1eix_A 224 VTQ 226 (245)
T ss_dssp HHT
T ss_pred HcC
Confidence 874
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.23 Score=46.84 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=54.5
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCC-CEEEEcHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGA-d~V~igr~~ 312 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+.+.+.+++||++.-|=.+-.++++ +-.+|| |++++-.|+
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 35567899999999765442111111 122355556666667899998656555566654 334697 999999998
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~ 330 (370)
++.. .++++.++++.
T Consensus 114 y~~~---s~~~l~~~f~~ 128 (311)
T 3h5d_A 114 YNKP---SQEGMYQHFKA 128 (311)
T ss_dssp SSCC---CHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHH
Confidence 7532 34444444333
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=93.22 E-value=3.3 Score=38.28 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=101.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+. .+-.+.+.-..+++-.-+.|+...+ +| ..+.+.||-. +... -+.+...- ..+-+..
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (289)
T 2yxg_A 7 PAIITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEA 84 (289)
T ss_dssp EBCCCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 44566765 5444444445677777778876443 33 3445666532 1212 24455543 3355667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 85 i~la~~a~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 119 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSI--TPYYN----------K-P---T-----------------------------QEGLRKHFG 119 (289)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788899999999999875 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.|.+.+++||++=.+ .+++...++. +. .+-+|.-+. ..+..+.++.+.. +..| .+|.
T Consensus 120 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK~s~----------gd~~~~~~~~~~~--~f~v-~~G~- 185 (289)
T 2yxg_A 120 KVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEAN----------PNLSQVSELIHDA--KITV-LSGN- 185 (289)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------SCTHHHHHHHHHT--CSEE-EESC-
T ss_pred HHHHhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEeCC----------CCHHHHHHHHHhC--CeEE-EECc-
Confidence 677778999998653 5678777776 53 244444332 1223344444443 4444 4442
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 186 --d~~~~~~l~~G~~G~is~~~ 205 (289)
T 2yxg_A 186 --DELTLPIIALGGKGVISVVA 205 (289)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHHCCCCEEEeChh
Confidence 24467789999999999875
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=1 Score=43.05 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++-+.++ +..
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~---------------------------------------------------~~~ 168 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE---------------------------------------------------PGW 168 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB---------------------------------------------------TTB
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC---------------------------------------------------chh
Confidence 36666777778888889998876542 123
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHH---HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~---a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
..+.++.+|+.+ +.++.+-. ..+.++ ++.+.+.|++.|.= . ..+..++.+.++++.. ++||++
T Consensus 169 ~~e~v~avr~~~g~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~ipIa~ 238 (368)
T 1sjd_A 169 DVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQ-------P-LEEEDVLGHAELARRI--QTPICL 238 (368)
T ss_dssp SHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHTTGGGCCSEEEC-------C-SCTTCHHHHHHHHTTC--SSCEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeccCCCCHHHHHHHHHHHhcCCCeEeC-------C-CChhhHHHHHHHHHhC--CCCEEE
Confidence 556778888776 46666543 123333 34445667776631 0 1123566777777665 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEE
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFI 308 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~i 308 (370)
++.+.+..++.+++..| +|.|++
T Consensus 239 dE~~~~~~~~~~~i~~~~~d~v~i 262 (368)
T 1sjd_A 239 DESIVSARAAADAIKLGAVQIVNI 262 (368)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99999999999999988 799998
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=93.18 E-value=2.2 Score=40.34 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...+.++++.+.||+++-+.++. +...
T Consensus 138 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~~ 168 (345)
T 2zad_A 138 DTVENRVKEAKKIFEEGFRVIKIKVGE-------------------------------------------------NLKE 168 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEeecC-------------------------------------------------CHHH
Confidence 467777777888888999998876431 0011
Q ss_pred cHHHHHHHHHhc-CCcEEEEe--cCCHHHH----HHHHHcCcc--EEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTIT-KLPILVKG--VLTAEDA----RIAVQAGAA--GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~--v~~~~~a----~~a~~aG~d--~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.+.++.+|+.- +.++.+-. ..+.+++ +.+.+.|++ .|. +. ..+..++.+.++++.. ++||
T Consensus 169 d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE-------~P-~~~~~~~~~~~l~~~~--~ipi 238 (345)
T 2zad_A 169 DIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYE-------QP-VRREDIEGLKFVRFHS--PFPV 238 (345)
T ss_dssp HHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEE-------CC-SCTTCHHHHHHHHHHS--SSCE
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeee-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 355677777762 35565542 2355553 556678888 653 10 1123567788888776 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEE
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFI 308 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~i 308 (370)
++++.+.+..++.+.+..| +|.|++
T Consensus 239 a~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 239 AADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred EEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999988 899999
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.96 Score=43.75 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=64.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 199 d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 268 (383)
T 3toy_A 199 DEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEE--------PVPQENLSGHAAVRERS--EIPIQ 268 (383)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcchHHHHHHHHhhc--CCCEE
Confidence 466788999987 57787764 2456664 4455678777741 01123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++..+.+..|+.+++..| +|.|++--
T Consensus 269 ~dE~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 269 AGENWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999999988 78888753
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=93.13 E-value=1.2 Score=43.21 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=65.4
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 205 d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 274 (390)
T 3ugv_A 205 DIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE--------PVVYDNFDGYAQLRHDL--KTPLM 274 (390)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhc--CCCEE
Confidence 456788999887 57888774 2456664 3445667777641 01123567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++.-+.+..|+.+++..| +|.|++--..
T Consensus 275 ~dE~~~~~~~~~~~i~~~a~d~v~ik~~~ 303 (390)
T 3ugv_A 275 IGENFYGPREMHQALQAGACDLVMPDFMR 303 (390)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBHHH
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999999999988 7888886543
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.6 Score=46.25 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=65.5
Q ss_pred c-eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 124 I-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 124 ~-~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
| .++.+-+.-+.+.+.++++.++++|+++|.++-... .|. ++. .+ .+ ..+..++..
T Consensus 298 P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~---~~~-d~~-~~--------~~---------~~GGlSG~~- 354 (443)
T 1tv5_A 298 PLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIN-DIK-SF--------EN---------KKGGVSGAK- 354 (443)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBS---CCC-CCG-GG--------TT---------CCSEEEEHH-
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc---ccc-ccc-cc--------cc---------ccCCcCCCc-
Confidence 5 677776555556778889999999999999873221 010 000 00 00 000000110
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
+ .+..++.++++++.+ ++||+.- ++.+.+||..++.+|||.|.+.
T Consensus 355 -~-----~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 355 -L-----KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp -H-----HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred -c-----hHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 0 123578899999998 8998864 5799999999999999999884
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.10 E-value=4.8 Score=37.46 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=100.4
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++-|+.-.+-.+.+.-..+++-..+.|+...+ + +..+.+.||-. +... -+.+...- ..+-+.
T Consensus 21 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~ 99 (304)
T 3cpr_A 21 GVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRT 99 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHH
T ss_pred EEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHH
Confidence 35556676433223333334666666678875443 3 33456666532 2222 34555543 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. .|... . | +.+-..+..
T Consensus 100 ai~la~~A~~~Gadavlv~--~P~y~----------~-~--------------------------------~~~~l~~~f 134 (304)
T 3cpr_A 100 SVELAEAAASAGADGLLVV--TPYYS----------K-P--------------------------------SQEGLLAHF 134 (304)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSS----------C-C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC----------C-C--------------------------------CHHHHHHHH
Confidence 7788999999999998875 34320 0 0 000123345
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+.. +..| .+|.
T Consensus 135 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~--~f~v-~~G~- 200 (304)
T 3cpr_A 135 GAIAAATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAK----------GDLVAATSLIKET--GLAW-YSGD- 200 (304)
T ss_dssp HHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHH--CCEE-EECS-
T ss_pred HHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEecCC----------CCHHHHHHHHHhc--CEEE-EECc-
Confidence 6677778999998764 567777776553 233333321 1233444444433 4444 3442
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 201 --d~~~l~~l~~G~~G~is~~a 220 (304)
T 3cpr_A 201 --DPLNLVWLALGGSGFISVIG 220 (304)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHHCCCCEEEecHH
Confidence 23467889999999998874
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.13 Score=47.64 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHhcCCcEEE---EecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILV---KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~v---K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..|+.|+++++..++||++ .++.+++++..+++.|+|+|.|.
T Consensus 185 ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG 229 (291)
T 3o07_A 185 VPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229 (291)
T ss_dssp SCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred CCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence 4799999999999999975 67789999999999999999984
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.31 Score=46.83 Aligned_cols=111 Identities=19% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCCceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhh-hhcCCCCccccccccccccCccccccch
Q 017492 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIK-NRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (370)
Q Consensus 121 ~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (370)
..-|.++.|-+.-+.+.+.+.++.++++| +++|.++ ++-..|-.. |+. ....+. ..+ ..+..+
T Consensus 192 ~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~-NT~~~g~~i-di~~~~~~~~----~~~---------~~gGlS 256 (354)
T 4ef8_A 192 YPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCI-NSIGNGLVI-DAETESVVIK----PKQ---------GFGGLG 256 (354)
T ss_dssp CCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC-CCEEEEECE-ETTTTEESCS----GGG---------GEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEe-cccCcceee-eccCCccccc----ccc---------ccCCCC
Confidence 33578888877667677777777777887 9988763 211000000 000 000000 000 000000
Q ss_pred hhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 199 GLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
+. . -.+..|+.+.++++.. ++||+.- ++.+.+|+.+++.+|||+|.+.
T Consensus 257 G~--~-----i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 257 GR--Y-----VLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG 306 (354)
T ss_dssp GG--G-----GHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred CC--C-----CchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence 10 0 1134789999999986 6998764 5789999999999999999985
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.49 Score=45.98 Aligned_cols=137 Identities=15% Similarity=0.039 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
+.+...+.++++.+.||+++-+.+.. ...|.. |.-|. .+. .+..+...
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-------~~s~~----~g~--------------------~~~~~~~~ 194 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSR-------EGVFL----EGP--------------------LPSETIKI 194 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCC-------TTCCC----SSS--------------------CCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccc-------ccCcc----cCC--------------------CchHHHHH
Confidence 67777778888888999999886410 001110 10010 000 00001123
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.= ...+..++.+.++++.+ ++||+
T Consensus 195 ~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~d~~~~~~l~~~~--~iPIa 264 (403)
T 2ox4_A 195 GVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEE--------INTPLNPRLLKEAKKKI--DIPLA 264 (403)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTSTHHHHHHHHTC--CSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEE
Confidence 567899999987 58888874 2466654 4455667776631 01123567788887766 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+++.+.+..++.+++..| +|.|++--.
T Consensus 265 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 265 SGERIYSRWGFLPFLEDRSIDVIQPDLG 292 (403)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecCcc
Confidence 999999999999999988 899998543
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=1.4 Score=40.93 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=101.1
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++-|+.-.+ .+.+.-..+++-..+.|+...+ + ++.+.+.+|-. +... -+.+...- ..+-+.
T Consensus 7 ~~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~ 84 (291)
T 3a5f_A 7 GVAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAA 84 (291)
T ss_dssp EEECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred eeeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHH
Confidence 355667775444 5555555677777778876543 3 33456666532 1212 34555543 345566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..-+ | + ..+ ..+..
T Consensus 85 ai~la~~a~~~Gadavlv~--~P~y~~-----------~---s----------------~~~-------------l~~~f 119 (291)
T 3a5f_A 85 SIAMSKWAESIGVDGLLVI--TPYYNK-----------T---T----------------QKG-------------LVKHF 119 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C---C----------------HHH-------------HHHHC
T ss_pred HHHHHHHHHhcCCCEEEEc--CCCCCC-----------C---C----------------HHH-------------HHHHH
Confidence 7788999999999999875 343200 0 0 000 12223
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+..+++..| .+|.
T Consensus 120 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~----------gd~~~~~~~~~~~~~~f~v-~~G~- 187 (291)
T 3a5f_A 120 KAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEAS----------GNISQIAQIKALCGDKLDI-YSGN- 187 (291)
T ss_dssp -CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHGGGSEE-EESC-
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHhcCCCeEE-EeCc-
Confidence 4445567889887653 567776666543 233443321 1234444555544334544 4442
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
-..++.++.+||+++..+.+
T Consensus 188 --d~~~~~~l~~G~~G~is~~a 207 (291)
T 3a5f_A 188 --DDQIIPILALGGIGVISVLA 207 (291)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHHCCCCEEEecHH
Confidence 23467789999999999875
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.25 Score=48.23 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.++.+.++|+|.|.+....|. ....++.+..+++..+ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~----~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC----hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 46678889999999998321111 1234566777777653 689887 77889999999999999999993
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.49 Score=43.25 Aligned_cols=70 Identities=27% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHcCccEEEEccC---CccCCCCccchHHHHHHHHHHccCCCcEEEe-----cCCCCH--------HHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFK 297 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~-----GGI~~~--------~dv~k 297 (370)
.+.+++..|.+.|||-|-+... ||. .|++-.+..+++.+ ++||.+. |++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~ 81 (256)
T 1twd_A 9 YSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRT 81 (256)
T ss_dssp SSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence 6899999999999999999753 332 45667777777776 7888774 444333 37777
Q ss_pred HHHhCCCEEEEcH
Q 017492 298 ALALGASGIFIGR 310 (370)
Q Consensus 298 alalGAd~V~igr 310 (370)
+..+|||+|.+|-
T Consensus 82 ~~~~GadGvV~G~ 94 (256)
T 1twd_A 82 VRELGFPGLVTGV 94 (256)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHHcCCCEEEEee
Confidence 8889999999994
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.16 Score=45.97 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=49.1
Q ss_pred HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHhCCCEEEEc
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIG 309 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d----------v~kalalGAd~V~ig 309 (370)
..+.+.|.++++.+. +.+.++++..+ ..+++++|||+-... ..+++..|||.+.+|
T Consensus 149 ~~~~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvG 214 (239)
T 1dbt_A 149 KQAEESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVG 214 (239)
T ss_dssp HHHHHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEC
Confidence 335678888876532 23444544443 468999999986443 367789999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017492 310 RPVVYSLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 310 r~~l~~~~~~G~~~v~~~l~~l~~el 335 (370)
|+++.+ .. ..+.++.+++++
T Consensus 215 r~I~~a---~d---p~~a~~~l~~~i 234 (239)
T 1dbt_A 215 RSITKA---ED---PVKAYKAVRLEW 234 (239)
T ss_dssp HHHHTS---SC---HHHHHHHHHHHH
T ss_pred hhhcCC---CC---HHHHHHHHHHHH
Confidence 998742 11 234455555544
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.78 Score=40.41 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.5
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEcc
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.|+.++++++..+ +|+++-+..+++++..+.++|+|+|.++.
T Consensus 157 ~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 201 (227)
T 2tps_A 157 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMIS 201 (227)
T ss_dssp CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESH
T ss_pred ccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhH
Confidence 357889999998887 99998887778888889999999999953
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.7 Score=44.86 Aligned_cols=87 Identities=9% Similarity=-0.032 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--C-CHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~-~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.+.++.+|+.+ +.++.+..- . +.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||
T Consensus 186 d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPI 255 (394)
T 3mqt_A 186 IVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIEA--------CLQHDDLIGHQKLAAAI--NTRL 255 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHS--SSEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEEC--------CCCcccHHHHHHHHhhC--CCCE
Confidence 567789999987 578888753 4 66665 3445678887741 11123567788888876 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..|+.+++..| +|.|++-
T Consensus 256 a~dE~~~~~~~~~~~l~~~~~d~v~~k 282 (394)
T 3mqt_A 256 CGAEMSTTRFEAQEWLEKTGISVVQSD 282 (394)
T ss_dssp EECTTCCHHHHHHHHHHHHCCSEECCC
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecC
Confidence 9999999999999999987 8999885
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.31 Score=49.19 Aligned_cols=247 Identities=14% Similarity=0.127 Sum_probs=133.5
Q ss_pred hcccceeeecccC-CCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-
Q 017492 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (370)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (370)
.||++.|+|..-. ..+++|++|.+- +..+..|++-|||...+ |..+|.+.++.|...++.. +.++++..
T Consensus 36 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvT------e~~lAia~a~~GgiGvIh~--~~~~~~q~~ 107 (511)
T 3usb_A 36 TFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVT------EADMAIAMARQGGLGIIHK--NMSIEQQAE 107 (511)
T ss_dssp CGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred ceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhhc------HHHHHHHHHhcCCceeecc--cCCHHHHHH
Confidence 6899999997532 235789998876 57899999999997543 5678888888887766743 45554422
Q ss_pred ------ccC----CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC----CCCCcchhHHhhhhcCCCCccccccc
Q 017492 119 ------STG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----TPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 119 ------~~~----~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd----~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
... +.+.+ + .......+.++...+.++..+.|.=+ ..+.--..+|++.... .......+
T Consensus 108 ~V~~V~~~~~~m~~d~v~--l---~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~--~~~~V~~v 180 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFF--L---TPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQD--YSIKISDV 180 (511)
T ss_dssp HHHHHHTSSSCSSSSCCC--B---CTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCC--SSSBHHHH
T ss_pred HHHHhhccccccccCCEE--E---CCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhcc--CCCcHHHh
Confidence 111 11211 1 22344556677777888888876522 0110112345442100 00000000
Q ss_pred ccc-ccCcccc-ccchhhHHHhhh-------cCC--C----CccHHH-HHHHHHh-------cCCcEEEEecC---CHHH
Q 017492 185 QGL-DLGKMDE-ANDSGLAAYVAG-------QID--R----SLSWKD-VKWLQTI-------TKLPILVKGVL---TAED 238 (370)
Q Consensus 185 ~~~-~~~~~~~-~~~~~~~~~~~~-------~~d--~----~~~~~~-i~~ir~~-------~~~Pv~vK~v~---~~~~ 238 (370)
-.- ......+ ....-..+.+.. ..| . -.+.++ ++.+... ..+++.+.... ..+.
T Consensus 181 M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~er 260 (511)
T 3usb_A 181 MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTR 260 (511)
T ss_dssp CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHH
T ss_pred cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHH
Confidence 000 0000000 000000000000 000 1 113343 3333321 12334333322 2466
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++.+.++|+|.|.+....+ .....++.+.++++.. +++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 261 a~aLveaGvd~I~Id~a~g----~~~~v~~~i~~i~~~~-~~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 261 IDALVKASVDAIVLDTAHG----HSQGVIDKVKEVRAKY-PSLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHhhccceEEeccccc----chhhhhhHHHHHHHhC-CCceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 8889999999999964322 1123456778887765 3577775 78999999999999999999874
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=92.77 E-value=6.1 Score=36.62 Aligned_cols=178 Identities=13% Similarity=0.108 Sum_probs=101.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+ -.+-.+.+.-..+++-..+.|+...+ + ++.+.+.+|-. +. .. -+.+...- ..+-+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHH
Confidence 4455666 33333444444666666778876544 3 33456666532 11 12 34566653 3455667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 119 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV--AGYYN----------R-P---S-----------------------------QEGLYQHFK 119 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTTT----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 788899999999999874 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++||++=.+ ++++...++.+. .+-+|.-+. ..+..+.++.+..+++..| .+|.
T Consensus 120 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds~----------gd~~~~~~~~~~~~~~f~v-~~G~-- 186 (297)
T 2rfg_A 120 MVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDAT----------TDLARISRERMLINKPFSF-LSGD-- 186 (297)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCTTHHHHHHTTCCSCCEE-EESC--
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCEEE-EeCc--
Confidence 677778999998654 567777777653 233444332 1122344454444334544 4442
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 187 -d~~~l~~l~~G~~G~is~~a 206 (297)
T 2rfg_A 187 -DMTAIAYNASGGQGCISVSA 206 (297)
T ss_dssp -GGGHHHHHHTTCCEEEESGG
T ss_pred -HHHHHHHHHCCCCEEEecHH
Confidence 23467889999999999874
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=92.71 E-value=1 Score=43.35 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=35.9
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~vs 253 (370)
.++.++++++.+++||+.-+..+++++..+++.| +|+|.+.
T Consensus 282 ~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~g 323 (364)
T 1vyr_A 282 SEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFG 323 (364)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred cHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEEC
Confidence 4677899999999999987766999999999998 9999883
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.76 Score=44.94 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.||+++=+.+..+..+. .+. .+ . . .+...
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~------~g~-~~----------------------~-~------~~~~~ 186 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAY------SGH-QL----------------------S-L------EVLDR 186 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CCB-CC----------------------C-H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccc------ccc-cc----------------------c-h------hhHHH
Confidence 46777777777777889999988765432110 000 00 0 0 01123
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 187 d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 256 (412)
T 4e4u_A 187 CELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEE--------PVPPGQEEAIAQVAKHT--SIPIA 256 (412)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCSSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 567899999987 578888743 456664 4555678887752 01123567788888766 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..++.+++..| +|.|++-
T Consensus 257 ~dE~~~~~~~~~~~i~~~a~d~v~~d 282 (412)
T 4e4u_A 257 TGERLTTKYEFHKLLQAGGASILQLN 282 (412)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999988 7999874
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.46 Score=44.76 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=56.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+ +++|||+.-|=.+-.++++ +-.+|||++++-.|+.+
T Consensus 36 ~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~ 114 (313)
T 3dz1_A 36 DFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSL 114 (313)
T ss_dssp HHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTC
T ss_pred HHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4567899999999665332111111 1223556666777 7999998555445555544 33489999999998732
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el 335 (370)
..++++.++++.+.+..
T Consensus 115 ----~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 115 ----RTDEQITTYFRQATEAI 131 (313)
T ss_dssp ----CSHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhC
Confidence 24666666665555443
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.65 E-value=2.5 Score=39.21 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHcCccEEEEc-cCCccCCCC-ccchHHHHHHHHHHccCC-CcEEEecCCCCHHHHHHH----HHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVS-NHGARQLDY-VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKA----LALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs-~~gg~~~~~-~~~~~~~l~~i~~~~~~~-ipvi~~GGI~~~~dv~ka----lalGAd~V~ig 309 (370)
.+++.|++.|||-|.+. |-|. -.++ ...-.+.+..++++++.. +.||..-|.-+.+++.++ ..+|||+|--.
T Consensus 130 ~Ea~~Ai~~GAdEIDmVINig~-lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 130 SEAKRAMQNGASELDMVMNYPW-LSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp HHHHHHHHTTCSEEEEECCHHH-HHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHcCCCEEEEEeehhh-hcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC
Confidence 56888999999999964 3221 0111 112234566666665433 788888888888886553 45799999887
Q ss_pred HHH
Q 017492 310 RPV 312 (370)
Q Consensus 310 r~~ 312 (370)
+.|
T Consensus 209 TGf 211 (288)
T 3oa3_A 209 TGF 211 (288)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.93 Score=42.46 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=54.8
Q ss_pred HhcCCcEEEE--e-------c---CCHHH----HHHHHHcCcc----EEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 222 TITKLPILVK--G-------V---LTAED----ARIAVQAGAA----GIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 222 ~~~~~Pv~vK--~-------v---~~~~~----a~~a~~aG~d----~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
+.+++|+++- . + .+++. ++.+.+.|+| .|.+-- + +.+.++.+.. .+
T Consensus 173 ~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y-----------~-e~f~~Vv~a~--~v 238 (307)
T 3fok_A 173 AAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPV-----------V-EEMERVMEST--TM 238 (307)
T ss_dssp HHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEEC-----------C-TTHHHHGGGC--SS
T ss_pred HHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCC-----------c-HHHHHHHHhC--CC
Confidence 3468998774 1 1 23433 5778899999 888821 1 3456666665 79
Q ss_pred cEEEecCCCC--HHHHHH----HHH-hCCCEEEEcHHHHH
Q 017492 282 PVFLDGGVRR--GTDVFK----ALA-LGASGIFIGRPVVY 314 (370)
Q Consensus 282 pvi~~GGI~~--~~dv~k----ala-lGAd~V~igr~~l~ 314 (370)
||+..||=.. .+++++ ++. .||.++.+||.+++
T Consensus 239 PVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 239 PTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp CEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 9999998874 455544 666 59999999998764
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=1.6 Score=42.44 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|..- ...++.+.++++.+ .+||+
T Consensus 199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa 266 (409)
T 3go2_A 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPIS 266 (409)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEE
Confidence 467899999987 678888742 466664 44456788888641 12566778887766 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+++.+.+..++.+++..| +|.|++--.
T Consensus 267 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 267 SCETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 999999999999999988 799988643
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.26 Score=47.20 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYS 315 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~ 315 (370)
+.+++.|+|+|.+.++-|-...-...-...+.+. .+.+++|||+.-|=.+-.++++ +-.+|||+|++-.|+++.
T Consensus 54 ~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~ 131 (344)
T 2hmc_A 54 KELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSR 131 (344)
T ss_dssp HHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSS
T ss_pred HHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 4567899999999665332111111111122233 3446899987555445455443 344899999999998763
Q ss_pred -HHhcCHHHHHHHHHHHH
Q 017492 316 -LAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 316 -~~~~G~~~v~~~l~~l~ 332 (370)
. .++++.++++.+.
T Consensus 132 ~~---s~~~l~~~f~~IA 146 (344)
T 2hmc_A 132 GS---VIAAQKAHFKAIL 146 (344)
T ss_dssp TT---CHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHH
Confidence 2 3555555554443
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.66 Score=44.35 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++++.+.|++++=+.+++ ++..
T Consensus 139 ~~~~~~~~~a~~~~~~G~~~~K~K~G~-------------------------------------------------~~~~ 169 (356)
T 3ro6_B 139 KPVEETLAEAREHLALGFRVLKVKLCG-------------------------------------------------DEEQ 169 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCC-------------------------------------------------CHHH
Confidence 467777777777778899988766532 1112
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 170 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa 239 (356)
T 3ro6_B 170 DFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQ--------PFPAGRTDWLRALPKAI--RRRIA 239 (356)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEEC--------CSCTTCHHHHHTSCHHH--HHTEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCCCcHHHHHHHHhcC--CCCEE
Confidence 456788889887 578887742 455554 5566788888741 01122566677776655 69999
Q ss_pred EecCCCCHHHHHHHHHhC--CCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALALG--ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG--Ad~V~igr~~ 312 (370)
+++-+.+..|+.+++..| +|.|++--..
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 240 ADESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp ESTTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred eCCcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 999999999999999876 8999987543
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.97 Score=43.96 Aligned_cols=144 Identities=15% Similarity=-0.022 Sum_probs=89.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.||+++=+.++.+... .+. ..-|..... + .......+..
T Consensus 131 ~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~---~~~---~~~~~~~~~-----------------g--~~~~~~~~~~ 185 (401)
T 3sbf_A 131 SDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGV---PTD---LHTTQNPTE-----------------G--SYYDQDQYMD 185 (401)
T ss_dssp ESSHHHHHHHHHHHHHTTCCEEEEEESCCCSC---GGG---SCCCSSCCS-----------------S--EECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---ccccccccc-----------------c--ccccchHHHH
Confidence 45677777888888889999998887643210 000 000000000 0 0000000112
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.=- ..+..++.+.++++.. .+||
T Consensus 186 ~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPI 255 (401)
T 3sbf_A 186 NTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDI--------LPPNQTEWLDNIRSQS--SVSL 255 (401)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCTTCGGGHHHHHTTC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhHHHHHHHHHhhC--CCCE
Confidence 3567799999987 578888753 466665 44556788777420 1122345667776655 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++++.+.+..|+.+++..| +|.|++--
T Consensus 256 a~dE~~~~~~~~~~~i~~~~~d~v~~k~ 283 (401)
T 3sbf_A 256 GLGELFNNPEEWKSLIANRRIDFIRCHV 283 (401)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred EeCCccCCHHHHHHHHhcCCCCEEecCc
Confidence 9999999999999999988 79988864
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.89 Score=44.15 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=65.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--C-CHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~-~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.+.++.+|+.+ +.++.+..- . +.++| +.+.+.|++.|.- ...+..++.+.++++.. .+||
T Consensus 191 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPI 260 (394)
T 3mkc_A 191 VAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEA--------TLQHDDLSGHAKLVENT--RSRI 260 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHC--SSCB
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEEC--------CCCchhHHHHHHHHhhC--CCCE
Confidence 567789999987 578888743 4 66665 4445678887741 11223567788888876 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..|+.+++..| +|.|++-
T Consensus 261 a~dE~~~~~~~~~~~l~~~~~d~v~~k 287 (394)
T 3mkc_A 261 CGAEMSTTRFEAEEWITKGKVHLLQSD 287 (394)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred EeCCCCCCHHHHHHHHHcCCCCeEecC
Confidence 9999999999999999987 8999884
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.76 Score=44.75 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ ++++.+.. ..+.+++ +.+.+.|++.|.-- ..+..++.+.++++.+ ++||
T Consensus 195 ~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPI 264 (410)
T 2qq6_A 195 AMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEP--------TPPENLDALAEVRRST--STPI 264 (410)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEECC--------CChhhHHHHHHHHhhC--CCCE
Confidence 3567899999987 57888774 2466664 44556788876410 1123567777777765 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..++.+++..| +|.|++-
T Consensus 265 a~dE~~~~~~~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 265 CAGENVYTRFDFRELFAKRAVDYVMPD 291 (410)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999988 8999884
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.35 E-value=6.9 Score=36.20 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=104.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ +.+.+.||-. +... -+.+...- ..+-+..
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 87 (294)
T 3b4u_A 9 AALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDA 87 (294)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHH
Confidence 4455666432223333334666767778876443 32 3456666532 2222 35566653 3456677
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|..- + ..+ .+-..+..+
T Consensus 88 i~la~~A~~~Gadavlv~--~P~y~------------~-~~s-----------------------------~~~l~~~f~ 123 (294)
T 3b4u_A 88 ADQSAEALNAGARNILLA--PPSYF------------K-NVS-----------------------------DDGLFAWFS 123 (294)
T ss_dssp HHHHHHHHHTTCSEEEEC--CCCSS------------C-SCC-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCcCC------------C-CCC-----------------------------HHHHHHHHH
Confidence 788999999999999874 34320 0 000 001233456
Q ss_pred HHHHhc---CCcEEEEec-------CCHHHHHHHH-HcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 219 WLQTIT---KLPILVKGV-------LTAEDARIAV-QAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 219 ~ir~~~---~~Pv~vK~v-------~~~~~a~~a~-~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.|.+.+ ++||++=.+ .+++...++. +.. +-+|.-+. ..+..+.++.+..+ +..| .
T Consensus 124 ~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~----------gd~~~~~~~~~~~~-~f~v-~ 191 (294)
T 3b4u_A 124 AVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSS----------GNWSHTERLLKEHG-DLAI-L 191 (294)
T ss_dssp HHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECC----------CCHHHHHHHHHHHT-TSEE-E
T ss_pred HHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECC----------CCHHHHHHHHHhCC-CeEE-E
Confidence 677778 899998653 5677777776 542 44555432 12444555555443 4544 3
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+| ....++.++.+|++++..+.+-
T Consensus 192 ~G---~d~~~l~~l~~G~~G~is~~~n 215 (294)
T 3b4u_A 192 IG---DERDLARGVRLGGQGAISGVAN 215 (294)
T ss_dssp EC---CHHHHHHHHHTTCCEEEESGGG
T ss_pred Ec---cHHHHHHHHHCCCCEEEeCHHH
Confidence 44 3456778899999999998753
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=92.33 E-value=6.8 Score=36.09 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=30.6
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++|||.|.+= +.+.. ...+|.+.+ ++|+|.-|
T Consensus 177 ~rA~a~~eAGA~~ivlE---------~vp~~-~a~~It~~l--~iP~igIG 215 (275)
T 3vav_A 177 RDARAVEEAGAQLIVLE---------AVPTL-VAAEVTREL--SIPTIGIG 215 (275)
T ss_dssp HHHHHHHHHTCSEEEEE---------SCCHH-HHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHcCCCEEEec---------CCCHH-HHHHHHHhC--CCCEEEEc
Confidence 56888999999999983 24443 777888887 89999876
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.33 E-value=0.11 Score=48.83 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=52.8
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 32 ~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 111 (300)
T 3eb2_A 32 DDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYF 111 (300)
T ss_dssp HHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSS
T ss_pred HHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 4567899999988654332111111 122355555666667899887544334454443 34589999999999876
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.++++.+
T Consensus 112 ~~---~~~~l~~~f~~v 125 (300)
T 3eb2_A 112 PL---KDAQIESYFRAI 125 (300)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH
Confidence 42 355554444443
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.61 Score=45.31 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccch-HHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipv 283 (370)
+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.= ...+.. ++.+.++++.. .+||
T Consensus 185 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~~l~~~~--~iPI 254 (392)
T 3ddm_A 185 DVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEE--------PLRADRPAAEWAELAQAA--PMPL 254 (392)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEEC--------CCCccchHHHHHHHHHhc--CCCE
Confidence 566789999987 57888874 2456654 4455678887741 011223 77788888776 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
++++.+.+..|+.+++..| +|.|++-
T Consensus 255 a~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 255 AGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp EECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999999987 7888873
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.67 Score=45.41 Aligned_cols=153 Identities=14% Similarity=-0.016 Sum_probs=90.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.||+++=+.++.|........-++.....+. ... . + .+ .......+..
T Consensus 141 ~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~--~~~---~---p-~~-------~~~~~~~~~~ 204 (418)
T 3r4e_A 141 GSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPA--DAS---L---P-SV-------TGWDTRKALN 204 (418)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEECCTTC--------------------C---C---C-CE-------EEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccc--ccc---c---c-cc-------ccccchhHHH
Confidence 45677778888888889999999988765310000000000000000 000 0 0 00 0000000012
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||
T Consensus 205 ~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI 274 (418)
T 3r4e_A 205 YVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLED--------CTPAENQEAFRLVRQHT--VTPL 274 (418)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEES--------CSCCSSGGGGHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCccCHHHHHHHHhcC--CCCE
Confidence 2466799999997 578888753 456664 4556778888741 01122455677777776 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++++.+.+..|+.+++..| +|.|++--
T Consensus 275 a~dE~~~~~~~~~~~l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 275 AVGEIFNTIWDAKDLIQNQLIDYIRATV 302 (418)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EEcCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999999999988 79998863
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.22 Score=46.21 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
....+.++++++.+ ++||++.+ +.+.++++.+.++|||+|+|++
T Consensus 211 ~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 211 HVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred cCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 34678999999999 89999985 6899999999999999999954
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.24 Score=45.41 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++++|+.+++||.+.+. .+++++.. +.+|+|+++|++
T Consensus 195 ~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGS 235 (262)
T 2ekc_A 195 KKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGS 235 (262)
T ss_dssp HHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECH
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECH
Confidence 46789999999999999764 56999988 788999999953
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=1.9 Score=41.08 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=62.0
Q ss_pred ceEEEEee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccc
Q 017492 124 IRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (370)
Q Consensus 124 ~~~~Qly~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (370)
+.++-|-. ..+.+...++++++++.|++.|.++..... +. .. .
T Consensus 221 pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~--------------~~-~~------~---------- 269 (349)
T 3hgj_A 221 PLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVV--------------LR-VR------I---------- 269 (349)
T ss_dssp CEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSC--------------SS-SC------C----------
T ss_pred eEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcC--------------cc-cc------c----------
Confidence 45666543 124566778888899999999887642110 00 00 0
Q ss_pred hhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEc
Q 017492 198 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs 253 (370)
+ ..+.+.++.++++++.+++||+.-+. .++++|..+++.| +|.|.+.
T Consensus 270 --------~-~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iG 318 (349)
T 3hgj_A 270 --------P-LAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLG 318 (349)
T ss_dssp --------C-CCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEES
T ss_pred --------C-CCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEec
Confidence 0 01234678899999999999988764 6899999999999 9999873
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.29 Score=47.18 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=54.1
Q ss_pred HHHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.=|=.+-.++++ +-.+|||++++-.|++
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY 165 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 165 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45577899999999665332111111 122345556666667899998444444455544 3347999999999976
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+. -.++++.+.++.+
T Consensus 166 ~k---~sq~gl~~hf~~I 180 (360)
T 4dpp_A 166 GK---TSIEGLIAHFQSV 180 (360)
T ss_dssp SC---CCHHHHHHHHHTT
T ss_pred CC---CCHHHHHHHHHHH
Confidence 53 2355555444443
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.37 Score=45.41 Aligned_cols=39 Identities=36% Similarity=0.824 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
.|+.++++++ ++||+.-| +.+++++..+++ .|+|+|.++
T Consensus 173 ~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iG 213 (318)
T 1vhn_A 173 EWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 213 (318)
T ss_dssp CGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred CHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence 4555666666 89998865 579999999988 799999884
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=92.04 E-value=7.9 Score=36.20 Aligned_cols=178 Identities=14% Similarity=0.090 Sum_probs=101.7
Q ss_pred ceeeccc-ccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHH
Q 017492 73 PIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm-~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~ 137 (370)
|.++-|+ .-.+-.+.+.-..+++-..+.|+...+ + +..+.+.||-. +.. + -+.+..+- . +-+.
T Consensus 17 ~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~-st~~ 94 (314)
T 3d0c_A 17 GINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG-Y-SVDT 94 (314)
T ss_dssp ECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHHH
T ss_pred EeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC-c-CHHH
Confidence 4455666 432223333334666666778876544 2 33456766532 121 2 35566653 3 6666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..- . | + .+-..+..
T Consensus 95 ai~la~~A~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f 129 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIH--QPVHP----------Y-I---T-----------------------------DAGAVEYY 129 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCCS----------C-C---C-----------------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHH
Confidence 7788899999999999874 34320 0 0 0 00023345
Q ss_pred HHHHHhcCCcEEEEe---cCCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccC--CCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKG---VLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~---v~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvi~~GGI~~ 291 (370)
+.|.+.+++||++=. +.+++...++.+. .+-+|.-+. ..+..+.++.+..++ +..| .+| .
T Consensus 130 ~~va~a~~lPiilYn~tg~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~f~v-~~G---~ 195 (314)
T 3d0c_A 130 RNIIEALDAPSIIYFKDAHLSDDVIKELAPLDKLVGIKYAI----------NDIQRVTQVMRAVPKSSNVAF-ICG---T 195 (314)
T ss_dssp HHHHHHSSSCEEEEECCTTSCTHHHHHHTTCTTEEEEEECC----------CCHHHHHHHHHHSCGGGCCEE-EET---T
T ss_pred HHHHHhCCCCEEEEeCCCCcCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCEEE-EEe---C
Confidence 667777899998843 2566776666543 233444322 134455556555543 4444 444 2
Q ss_pred HH-HHHHHHHhCCCEEEEcHH
Q 017492 292 GT-DVFKALALGASGIFIGRP 311 (370)
Q Consensus 292 ~~-dv~kalalGAd~V~igr~ 311 (370)
.. .++.++.+|++++.-+.+
T Consensus 196 d~~~~~~~l~~G~~G~is~~a 216 (314)
T 3d0c_A 196 AEKWAPFFYHAGAVGFTSGLV 216 (314)
T ss_dssp HHHHHHHHHHHTCCEEEESGG
T ss_pred cHHHHHHHHHcCCCEEEecHH
Confidence 34 578889999999999874
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.61 Score=44.10 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCcEEEEecC-C---HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 214 WKDVKWLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~-~---~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.+.++++++.++.|+.+.... + .+.++.+.++|+|.|.+. ++ .+ ...+..+++. .++|+. ++
T Consensus 66 ~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~--~g------~p-~~~~~~l~~~---g~~v~~--~v 131 (326)
T 3bo9_A 66 RKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFG--AG------NP-TKYIRELKEN---GTKVIP--VV 131 (326)
T ss_dssp HHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEE--SS------CC-HHHHHHHHHT---TCEEEE--EE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEEC--CC------Cc-HHHHHHHHHc---CCcEEE--Ec
Confidence 346788888778899888654 2 356788899999999883 33 12 3344444432 577775 68
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 017492 290 RRGTDVFKALALGASGIFI 308 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~i 308 (370)
.+.+++.++...|||++.+
T Consensus 132 ~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 132 ASDSLARMVERAGADAVIA 150 (326)
T ss_dssp SSHHHHHHHHHTTCSCEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999998
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.91 Score=43.67 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=35.2
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~v 252 (370)
.++.++++++.+++||+.-+..++++|..+++.| +|+|.+
T Consensus 281 ~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 281 PVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEC
T ss_pred cHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehh
Confidence 4677899999999999987756999999999998 999977
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.71 Score=40.52 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHhc-----CCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 214 WKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 214 ~~~i~~ir~~~-----~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.++++++.. +.|+++-+..+++++..+.++|+|+++|+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 154 LEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEC
Confidence 35577777665 68988877777888888999999999995
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=2.7 Score=39.71 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccch----HHHHHHHHHHccCCCcEEEec------------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPAT----IMALEEVVKATQGRIPVFLDG------------------ 287 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~----~~~l~~i~~~~~~~ipvi~~G------------------ 287 (370)
.+|++|.... +.|+|.+-++- ||-+... +.|. ++.|.+|.+.+ ++|+..=|
T Consensus 153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFK-SESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCC-C----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCC-CCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhccc
Confidence 5688887665 79999999973 5544322 3333 57899999888 79999999
Q ss_pred -----CCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 288 -----GVRRGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 288 -----GI~~~~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
|+.. +++.+++.+|..-|-+++-+-++... .. ..-+....+.+++.++..|..+|+.
T Consensus 230 ~~~~~Gvp~-e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 304 (323)
T 2isw_A 230 MPDAVGVPI-ESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA 304 (323)
T ss_dssp CTTCBCCCH-HHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccCCCCCH-HHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5544 88999999999999999976554321 01 1123334467788888888888864
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.88 E-value=1.3 Score=40.19 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..++.++++++. .++||+.=+..+++++..+.++|+|+|.|.
T Consensus 176 ~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 176 PGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp CCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEES
T ss_pred hhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 468889999886 489998877669999999999999999984
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.84 Score=43.17 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCcEEEEecC-C---HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 214 WKDVKWLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~-~---~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.+.++++++.++.|+.+.... + .+.++.+.++|+|+|.+. +|. | .+.+..+++. .+||+.. +
T Consensus 52 ~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~--~g~-----p--~~~i~~l~~~---g~~v~~~--v 117 (332)
T 2z6i_A 52 KANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTG--AGN-----P--SKYMERFHEA---GIIVIPV--V 117 (332)
T ss_dssp HHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEEC--SSC-----G--GGTHHHHHHT---TCEEEEE--E
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEEC--CCC-----h--HHHHHHHHHc---CCeEEEE--e
Confidence 345777887778899888764 3 345788999999999883 332 1 2344444442 5788754 7
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 017492 290 RRGTDVFKALALGASGIFI 308 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~i 308 (370)
.+.+++.++...|+|++.+
T Consensus 118 ~~~~~a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 118 PSVALAKRMEKIGADAVIA 136 (332)
T ss_dssp SSHHHHHHHHHTTCSCEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8889998888899999998
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=91.81 E-value=2.7 Score=40.79 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=64.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CC---HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~---~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+.+.++.+|+.+ +.++.+..- .+ .+.++.+.+.|++.|. + ...+..++.+.++++.. .+||++
T Consensus 191 d~~~v~avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~ 260 (400)
T 3mwc_A 191 DVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHE-------Q-PLHYEALLDLKELGERI--ETPICL 260 (400)
T ss_dssp SHHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEE-------S-CSCTTCHHHHHHHHHHS--SSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEe-------C-CCChhhHHHHHHHHhhC--CCCEEE
Confidence 466788888887 577777642 22 3345556667877763 1 11223567788888776 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+.-+.+..|+.+++..| +|.|++--.
T Consensus 261 dE~~~~~~~~~~~~~~~~~d~v~~k~~ 287 (400)
T 3mwc_A 261 DESLISSRVAEFVAKLGISNIWNIKIQ 287 (400)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred eCCcCCHHHHHHHHhcCCCCEEEEcch
Confidence 99999999999999987 799998643
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=91.66 E-value=1.5 Score=42.04 Aligned_cols=88 Identities=11% Similarity=-0.004 Sum_probs=64.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++ ++.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 174 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPia 243 (370)
T 1chr_A 174 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--RVAIM 243 (370)
T ss_dssp HHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEEC--------CSCTTCHHHHHHHHHHS--CSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEE
Confidence 566789999987 478888742 34444 45566678777641 11223466788888776 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++-+.+..|+.+++..| +|.|++--
T Consensus 244 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 244 ADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp ESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 999999999999999987 89999853
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.67 Score=41.52 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHhc-----CCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~-----~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
...+.++++|+.. ++||.+-|..+.+.+..+.++|+|++++.
T Consensus 155 ~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 155 EVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAG 201 (230)
T ss_dssp GGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEEC
Confidence 4577888888887 79999988777799999999999999984
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.52 Score=45.18 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHHHHHHc--CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 238 DARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 238 ~a~~a~~a--G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+..+.+. |+|.|.+....| .....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 122 ~~~~l~~~~~g~~~i~i~~~~g----~~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 122 QLEQILEAIPQVKYICLDVANG----YSEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHCTTCCEEEEECSCT----TBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhccCCCCEEEEEecCC----CcHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 35556666 999988853222 11235677888877652 688885 77889999999999999999775
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=91.60 E-value=1.5 Score=43.05 Aligned_cols=89 Identities=10% Similarity=-0.089 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|.-- ..+..++.+.++++.. .+||
T Consensus 212 ~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPI 281 (425)
T 3vcn_A 212 SVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDS--------VPAENQAGFRLIRQHT--TTPL 281 (425)
T ss_dssp TTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhhHHHHHHHHhcC--CCCE
Confidence 4678899999997 578888743 466664 45567788887521 1122456677787776 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++++.+.+..++.+++..| +|.|++--
T Consensus 282 a~dE~~~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 282 AVGEIFAHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence 9999999999999999988 79998853
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=91.60 E-value=1 Score=44.22 Aligned_cols=144 Identities=16% Similarity=-0.002 Sum_probs=90.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.||+++=+.++..... .+. ..-|.+.... .+.....+..
T Consensus 152 ~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~---~~~---~~~~~~~~~~-------------------~~~~~~~~~~ 206 (422)
T 3tji_A 152 GETLEALFASVDALIAQGYRHIRCQLGFYGGT---PSA---LHAPDNPTPG-------------------AWFDQQEYMS 206 (422)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBC---GGG---SCCCSSCCSS-------------------EECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---cccccccccc-------------------ccccchhHHH
Confidence 45677777888888889999998877643110 000 0000000000 0000000012
Q ss_pred ccHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.++.+|+.+ +++|.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||
T Consensus 207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI 276 (422)
T 3tji_A 207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIED--------ILPPQQSAWLEQVRQQS--CVPL 276 (422)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCGGGGGGHHHHHHHC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEEC--------CCChhhHHHHHHHHhhC--CCCE
Confidence 3567799999987 578888753 566665 4455678887741 01122456677787776 8999
Q ss_pred EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++++.+.+..|+.+++..| +|.|++--
T Consensus 277 a~dE~~~~~~~~~~ll~~ga~d~v~~k~ 304 (422)
T 3tji_A 277 ALGELFNNPAEWHDLIVNRRIDFIRCHV 304 (422)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCG
T ss_pred EEeCCcCCHHHHHHHHhcCCCCEEecCc
Confidence 9999999999999999987 79998853
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.35 Score=45.09 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=47.6
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 29 ~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (291)
T 3a5f_A 29 EWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYN 108 (291)
T ss_dssp HHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4567899999999765432111111 122345555666667899987555545555544 33479999999999865
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=91.48 E-value=1.4 Score=42.35 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.+ -++.+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 177 d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~ipIa 246 (377)
T 3my9_A 177 ELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIEQ--------PVPRRHLDAMAGFAAAL--DTPIL 246 (377)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEEC--------CCCccCHHHHHHHHHhC--CCCEE
Confidence 456788888887 578887742 2333 355666778887741 01123467788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+++-+.+..|+.+++..| +|.|++--.
T Consensus 247 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 274 (377)
T 3my9_A 247 ADESCFDAVDLMEVVRRQAADAISVKIM 274 (377)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEECCHH
T ss_pred ECCccCCHHHHHHHHHcCCCCEEEeccc
Confidence 999999999999999987 899988643
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=91.47 E-value=2.4 Score=39.26 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=99.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++-|+.-.+-.+.+.-..+++-..+.|+...+ ++ ..+.+.||-. +... -+.+...- ..+-+..
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (292)
T 2ojp_A 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEA 85 (292)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4456666433223333334666666677875543 32 3456666532 1212 34555543 3355666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. +|..- . | + .+-..+..+
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y~----------~-~---s-----------------------------~~~l~~~f~ 120 (292)
T 2ojp_A 86 ISLTQRFNDSGIVGCLTV--TPYYN----------R-P---S-----------------------------QEGLYQHFK 120 (292)
T ss_dssp HHHHHHTTTSSCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHHH
Confidence 778888889999999875 34320 0 0 0 001233456
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.|.+.+++||++=.+ .+++...++.+. ..|+-. .+ ....+..+.++.+..+++..|+ +|-
T Consensus 121 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~--pnivgi------K~-s~gd~~~~~~~~~~~~~~f~v~-~G~--- 187 (292)
T 2ojp_A 121 AIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKV--KNIIGI------XE-ATGNLTRVNQIKELVSDDFVLL-SGD--- 187 (292)
T ss_dssp HHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHTS--TTEEEC-------C-CSCCTHHHHHHHTTSCTTSBCE-ESC---
T ss_pred HHHHhcCCCEEEEeCcchhccCCCHHHHHHHHcC--CCEEEE------eC-CCCCHHHHHHHHHhcCCCEEEE-ECc---
Confidence 667778899998654 567777777653 333210 01 1112344455554443455543 341
Q ss_pred HHHHHHHHHhCCCEEEEcHH
Q 017492 292 GTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~ 311 (370)
...++.++.+|++++..+.+
T Consensus 188 d~~~~~~l~~G~~G~is~~~ 207 (292)
T 2ojp_A 188 DASALDFMQYGGHGVISVTA 207 (292)
T ss_dssp GGGHHHHHHTTCCEEEESGG
T ss_pred HHHHHHHHHCCCcEEEeCHH
Confidence 24467889999999999874
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=91.46 E-value=2.3 Score=36.78 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHhc-CCcEEE--EecCC-HHH-HHHHHHcCccEEEEccCCccCCCCccchHHHH-HHHHHHccCCCcEEE-e
Q 017492 214 WKDVKWLQTIT-KLPILV--KGVLT-AED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL-EEVVKATQGRIPVFL-D 286 (370)
Q Consensus 214 ~~~i~~ir~~~-~~Pv~v--K~v~~-~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l-~~i~~~~~~~ipvi~-~ 286 (370)
.+.++++++.+ +.|+++ |. .+ ++. ++.+.++|+|+|.++...+ ......+ ..+.+ . .+++.+ .
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~~-~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~-~--g~~~gv~~ 110 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMKT-MDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQA-H--NKGVVVDL 110 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEEE-CSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEEC
T ss_pred HHHHHHHHHhCCCCeEEEEEEe-cCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHH-c--CCceEEEE
Confidence 45788899887 789886 74 45 665 8899999999999843221 1122222 22222 2 344422 2
Q ss_pred cCCCCHHHHHHH-HHhCCCEEEEc
Q 017492 287 GGVRRGTDVFKA-LALGASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~ka-lalGAd~V~ig 309 (370)
-...++.+.++. ...|+|.|.+.
T Consensus 111 ~s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 111 IGIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp TTCSSHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCChHHHHHHHHHhCCCEEEEE
Confidence 233366764444 45799998554
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=1.6 Score=41.95 Aligned_cols=41 Identities=22% Similarity=0.063 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEE
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~v 252 (370)
+.++.++++++.+++||+.-+. .++++|..+++.| +|.|.+
T Consensus 282 ~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 282 FMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp TTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEEC
T ss_pred hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEe
Confidence 4677889999999999988764 5899999999999 999977
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.37 E-value=2.2 Score=40.75 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred ccHHH---HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 212 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 212 ~~~~~---i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.|+. +.+.++..+++++ =.+++.+.+..+.+.|+|.+.|... -...+..|..+.+ ...|||.+-|
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~-st~fD~~svd~l~~~~v~~~KI~S~-------~~~N~pLL~~va~---~gKPviLstG 143 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAI-CTPFDEESVDLIEAHGIEIIKIASC-------SFTDWPLLERIAR---SDKPVVASTA 143 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE-EEECSHHHHHHHHHTTCCEEEECSS-------STTCHHHHHHHHT---SCSCEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCcEE-eccCCHHHHHHHHHcCCCEEEECcc-------cccCHHHHHHHHh---hCCcEEEECC
Confidence 45554 4555555688875 5568899999999999999999532 1234556766654 3789999999
Q ss_pred CCCHHHHHHHHH----hCCCEEE
Q 017492 289 VRRGTDVFKALA----LGASGIF 307 (370)
Q Consensus 289 I~~~~dv~kala----lGAd~V~ 307 (370)
..|-+++..|+. .|.+.+.
T Consensus 144 mstl~Ei~~Ave~i~~~g~~viL 166 (350)
T 3g8r_A 144 GARREDIDKVVSFMLHRGKDLTI 166 (350)
T ss_dssp TCCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999988765 3666444
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=91.22 E-value=8.4 Score=35.56 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCceeecCCC------------CCCHHH-------HhccCCCceEEEEeecC-----ChHHHHHHHHHH
Q 017492 90 EYATARAASAAGTIMTLSSWS------------TSSVEE-------VASTGPGIRFFQLYVYK-----DRNVVAQLVRRA 145 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~------------~~~~ee-------i~~~~~~~~~~Qly~~~-----d~~~~~~~l~ra 145 (370)
|...|+.+.++|+.++++..+ ..+++| |.+..+.+..+ .-.+- +.+...+-..|.
T Consensus 43 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~pfgsy~~s~~~a~~na~rl 121 (281)
T 1oy0_A 43 DYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVV-ADLPFGSYEAGPTAALAAATRF 121 (281)
T ss_dssp SHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEE-EECCTTSSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEE-EECCCCcccCCHHHHHHHHHHH
Q ss_pred HH-cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc
Q 017492 146 ER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (370)
Q Consensus 146 ~~-~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~ 224 (370)
-+ +|+.++-|. +.....+.|+.+++.
T Consensus 122 ~~eaGa~aVklE----------------------------------------------------dg~e~~~~I~al~~a- 148 (281)
T 1oy0_A 122 LKDGGAHAVKLE----------------------------------------------------GGERVAEQIACLTAA- 148 (281)
T ss_dssp HHTTCCSEEEEE----------------------------------------------------BSGGGHHHHHHHHHH-
T ss_pred HHHhCCeEEEEC----------------------------------------------------CcHHHHHHHHHHHHC-
Q ss_pred CCcEE---------------EEec-------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 225 KLPIL---------------VKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 225 ~~Pv~---------------vK~v-------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
++||+ .|.. ...++|+.+.++|||.|.+ -+.+. +...+|.+.+ ++|
T Consensus 149 gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivl---------E~vp~-~~a~~it~~l--~iP 216 (281)
T 1oy0_A 149 GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVM---------EMVPA-ELATQITGKL--TIP 216 (281)
T ss_dssp TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEE---------ESCCH-HHHHHHHHHC--SSC
T ss_pred CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEE---------ecCCH-HHHHHHHHhC--CCC
Q ss_pred EEEecC
Q 017492 283 VFLDGG 288 (370)
Q Consensus 283 vi~~GG 288 (370)
+|.-|.
T Consensus 217 ~igIGa 222 (281)
T 1oy0_A 217 TVGIGA 222 (281)
T ss_dssp EEEESS
T ss_pred EEEeCC
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.85 Score=42.67 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=58.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++++. .++.||++|..+ ++++ ++.+.+.|.+-|++.-.|-+ ..... ..+..++.+++ . .+||+
T Consensus 144 n~~LLr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~-y~~~~~~vdl~~i~~lk~-~--~~PV~ 218 (298)
T 3fs2_A 144 QTDLLIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS-FGYNTLVSDMRALPIMAG-L--GAPVI 218 (298)
T ss_dssp CHHHHHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE-CSSSCEECCTTHHHHHHT-T--TSCEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCCCccCHHHHHHHHH-c--CCcEE
Confidence 455677765 479999999764 6654 34455678888877543321 11111 24556776666 5 79999
Q ss_pred Ee---------------cCCCCHH--HHHHHHHhCCCEEEEcHH
Q 017492 285 LD---------------GGVRRGT--DVFKALALGASGIFIGRP 311 (370)
Q Consensus 285 ~~---------------GGI~~~~--dv~kalalGAd~V~igr~ 311 (370)
.| +|-|.-. -...|+++|||+++|=.-
T Consensus 219 ~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H 262 (298)
T 3fs2_A 219 FDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETH 262 (298)
T ss_dssp EEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEE
T ss_pred EcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEec
Confidence 95 3433322 244688999999998763
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=90.97 E-value=2.4 Score=38.36 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHHHHHHcCccEEEEc-cCCccCCCCc-cchHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHH----HHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVS-NHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA----LALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs-~~gg~~~~~~-~~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~ka----lalGAd~V~ig 309 (370)
.+++.|++.|||.|.+. |-| .-.++- ..-.+.+..+++++++ -++||..-|.-+.+.+.++ ..+|||+|=..
T Consensus 99 ~Ea~~Ai~~GAdEIDmViNig-~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTS 177 (239)
T 3ngj_A 99 YETKVAVEQGAEEVDMVINIG-MVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTS 177 (239)
T ss_dssp HHHHHHHHTTCSEEEEECCHH-HHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCEEEEEeehH-HhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECC
Confidence 56888999999999975 322 101111 1123455666666532 3688888888888888888 67899999988
Q ss_pred HHH
Q 017492 310 RPV 312 (370)
Q Consensus 310 r~~ 312 (370)
+.|
T Consensus 178 TGf 180 (239)
T 3ngj_A 178 TGF 180 (239)
T ss_dssp CSS
T ss_pred CCC
Confidence 755
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=90.85 E-value=9.7 Score=34.98 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=99.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCCCceEEEEeecCChHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~~~~~~Qly~~~d~~~~~~ 140 (370)
|.++.|+. .+-.+.+.-..+++-..+.|+...+ ++ +.+.+.+|-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~ 81 (286)
T 2r91_A 5 APVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIA 81 (286)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHH
T ss_pred EeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHH
Confidence 44566765 4444444444666666778876543 32 3456666532 22333 444432 335566778
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
+.+.|+++|++++.+. .|..-+ .| + .+-..+..+.|
T Consensus 82 la~~A~~~Gadavlv~--~P~y~~----------~~---s-----------------------------~~~l~~~f~~v 117 (286)
T 2r91_A 82 LAKYAESRGAEAVASL--PPYYFP----------RL---S-----------------------------ERQIAKYFRDL 117 (286)
T ss_dssp HHHHHHHTTCSEEEEC--CSCSST----------TC---C-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCcCCC----------CC---C-----------------------------HHHHHHHHHHH
Confidence 8899999999999874 343200 00 0 00123345667
Q ss_pred HHhcCCcEEEEec-------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 221 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 221 r~~~~~Pv~vK~v-------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.+.+++||++=.+ .+++...+ .-.+-+|.-+. ..+..+.++.+ .+++..|+ +|- ..
T Consensus 118 a~a~~lPiilYn~P~~tg~~l~~~~~~~--~pnivgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G~---d~ 180 (286)
T 2r91_A 118 CSAVSIPVFLYNYPAAVGRDVDARAAKE--LGCIRGVKDTN----------ESLAHTLAYKR-YLPQARVY-NGS---DS 180 (286)
T ss_dssp HHHCSSCEEEEECHHHHSSCCCHHHHHH--HSCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-ECC---GG
T ss_pred HHhcCCCEEEEeChhhcCCCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ecc---HH
Confidence 7778999998764 45666555 23344554432 12344455555 44455553 442 24
Q ss_pred HHHHHHHhCCCEEEEcHH
Q 017492 294 DVFKALALGASGIFIGRP 311 (370)
Q Consensus 294 dv~kalalGAd~V~igr~ 311 (370)
.++.++++|++++..+.+
T Consensus 181 ~~~~~l~~G~~G~is~~a 198 (286)
T 2r91_A 181 LVFASFAVRLDGVVASSA 198 (286)
T ss_dssp GHHHHHHTTCSEECCGGG
T ss_pred HHHHHHHcCCCEEEecHH
Confidence 467889999999988874
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=5.8 Score=38.24 Aligned_cols=88 Identities=11% Similarity=-0.035 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhc--CCcEE-EEe--cCCHHHH----HHHHHcCc--cEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 213 SWKDVKWLQTIT--KLPIL-VKG--VLTAEDA----RIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~-vK~--v~~~~~a----~~a~~aG~--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
+.+.++.+|+.+ +.++. +.. ..+.++| +.+.+.|+ +.|. + ...+..++.+.++++.. .+
T Consensus 172 d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------q-P~~~~d~~~~~~l~~~~--~i 241 (391)
T 3gd6_A 172 DEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------S-PAPRNDFDGLYQLRLKT--DY 241 (391)
T ss_dssp HHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------C-CSCTTCHHHHHHHHHHC--SS
T ss_pred HHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceec-------C-CCChhhHHHHHHHHHHc--CC
Confidence 456788888886 56777 664 2466665 44556777 6664 1 01123577788888876 79
Q ss_pred cEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
|| +..+.+..|+.+++..| +|.|++--..
T Consensus 242 PI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 271 (391)
T 3gd6_A 242 PI--SEHVWSFKQQQEMIKKDAIDIFNISPVF 271 (391)
T ss_dssp CE--EEECCCHHHHHHHHHHTCCSEEEECHHH
T ss_pred Cc--CCCCCCHHHHHHHHHcCCCCEEEECchh
Confidence 99 88999999999999988 7999998644
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=90.82 E-value=1.9 Score=40.30 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c-c---CCCCccchHH----HHHHHHHHccCCCcEEEe
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g-~---~~~~~~~~~~----~l~~i~~~~~~~ipvi~~ 286 (370)
.++++.+. +-|+.+-++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++ .+..|.+.. ++||++|
T Consensus 13 ~lr~l~~~-~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD 89 (298)
T 3eoo_A 13 KFRAAVAA-EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVD 89 (298)
T ss_dssp HHHHHHHH-SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEE
Confidence 34444443 67888888899999999999999999998622 1 0 1345555543 344444444 7999998
Q ss_pred c--CCCCHHHHHH----HHHhCCCEEEEc
Q 017492 287 G--GVRRGTDVFK----ALALGASGIFIG 309 (370)
Q Consensus 287 G--GI~~~~dv~k----alalGAd~V~ig 309 (370)
. |..++.++.+ .+..||.+|.|=
T Consensus 90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 118 (298)
T 3eoo_A 90 IDTGWGGAFNIARTIRSFIKAGVGAVHLE 118 (298)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEEC
Confidence 7 5546555543 445899999774
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.79 E-value=7.3 Score=36.44 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=100.3
Q ss_pred Cceeeccccc-ccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChH
Q 017492 72 MPIMIAPTAM-QKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (370)
Q Consensus 72 ~Pi~iapm~~-~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~ 136 (370)
.|.++-|+.- .+-.+.+.-..+++-.-+.|+...+ + ++.+.+.+|-. +... -+.+..+ ..+-+
T Consensus 16 ~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGv--g~~t~ 93 (316)
T 3e96_A 16 SGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGI--GYATS 93 (316)
T ss_dssp EECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE--CSSHH
T ss_pred EEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEe--CcCHH
Confidence 3556677643 3333333334666667778876544 2 33456666532 2212 3556665 33777
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
...++.+.|+++|++++.+. +|... + | ..+-..+.
T Consensus 94 ~ai~la~~A~~~Gadavlv~--~P~y~-~----------~--------------------------------s~~~l~~~ 128 (316)
T 3e96_A 94 TAIELGNAAKAAGADAVMIH--MPIHP-Y----------V--------------------------------TAGGVYAY 128 (316)
T ss_dssp HHHHHHHHHHHHTCSEEEEC--CCCCS-C----------C--------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEc--CCCCC-C----------C--------------------------------CHHHHHHH
Confidence 77888899999999999874 34320 0 0 00012345
Q ss_pred HHHHHHhcCCcEEEEec---CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccC-CCcEEEecCCCC
Q 017492 217 VKWLQTITKLPILVKGV---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR 291 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvi~~GGI~~ 291 (370)
.+.|.+.+++||++=.+ ++++...++.+.. +-+|.-+. ..+..+.++.+..++ +..-+.+|.=.
T Consensus 129 f~~va~a~~lPiilYn~g~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~~v~~G~d~- 197 (316)
T 3e96_A 129 FRDIIEALDFPSLVYFKDPEISDRVLVDLAPLQNLVGVKYAI----------NDLPRFAKVVRSIPEEHQIAWICGTAE- 197 (316)
T ss_dssp HHHHHHHHTSCEEEEECCTTSCTHHHHHHTTCTTEEEEEECC----------CCHHHHHHHHTTSCGGGCCEEEETTCT-
T ss_pred HHHHHHhCCCCEEEEeCCCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCceEEEeCChH-
Confidence 66777777899988653 5677766665432 33333321 133445555544432 33313444211
Q ss_pred HHHHHHHHHhCCCEEEEcHH
Q 017492 292 GTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~ 311 (370)
.-+...+++||+++..+.+
T Consensus 198 -~~~~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 198 -KWAPFFWHAGAKGFTSGLV 216 (316)
T ss_dssp -TTHHHHHHHTCCEEEESGG
T ss_pred -HHHHHHHHCCCCEEEechh
Confidence 1133457899999998874
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=4.3 Score=38.02 Aligned_cols=110 Identities=19% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCc-cchHHHHHHHHHHccCCCcEEEecCC-------------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGV------------------- 289 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GGI------------------- 289 (370)
.+|++|.... +.|+|.+-++- ||-+...+. .-.++.|.+|.+.. ++|+..=||=
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~ 232 (307)
T 3n9r_A 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKG 232 (307)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCC
Confidence 4688887754 69999999873 554432222 23677899886654 6999998843
Q ss_pred ---CCHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 290 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 290 ---~~~~dv~kalalGAd~V~igr~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
...+++.+++.+|..-|-+++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 233 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 304 (307)
T 3n9r_A 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23488999999999999999977554221 00 1 112333455666777777777764
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.70 E-value=1.4 Score=41.17 Aligned_cols=89 Identities=25% Similarity=0.396 Sum_probs=60.7
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-cc----CCCCccchHH----HHHHHHHHccCCCcEEEec
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G 287 (370)
++++.+. +-|+.+-++-+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ .+..|.+.. ++||++|.
T Consensus 9 lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~ 85 (295)
T 1xg4_A 9 FRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDA 85 (295)
T ss_dssp HHHHHHH-SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEEEC
T ss_pred HHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEecC
Confidence 3444332 56888888899999999999999999998652 11 1344555554 334444444 68999998
Q ss_pred --CCC-CHHHHHH----HHHhCCCEEEE
Q 017492 288 --GVR-RGTDVFK----ALALGASGIFI 308 (370)
Q Consensus 288 --GI~-~~~dv~k----alalGAd~V~i 308 (370)
|.. ++.++.+ .+..||++|.|
T Consensus 86 d~Gyg~~~~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 86 DIGFGSSAFNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 554 5555543 55689999987
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=4.3 Score=39.07 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHH----HHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~----~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
+.+.++.+|+.+ +.++.+-- ..+.++|. .+.+ .+++.|. + ...+..++.+.++++.. .+|
T Consensus 172 d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~--~iP 241 (379)
T 3r0u_A 172 DIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIE-------Q-PVKYYDIKAMAEITKFS--NIP 241 (379)
T ss_dssp HHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEE-------C-CCCcccHHHHHHHHhcC--CCC
Confidence 566788999987 46777764 24666653 3445 4555553 0 01123467788888776 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 283 VFLDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
|.++.-+.+..|+.+++..| +|.|++--..
T Consensus 242 Ia~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 272 (379)
T 3r0u_A 242 VVADESVFDAKDAERVIDEQACNMINIKLAK 272 (379)
T ss_dssp EEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred EEeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence 99999999999999999988 7999986543
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=90.61 E-value=0.37 Score=43.43 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++++.+ ++|+++.+ +.++++++.+. .|||+|+|++
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 688899999999 79999986 68999999988 7999999954
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.72 Score=44.18 Aligned_cols=270 Identities=17% Similarity=0.173 Sum_probs=135.0
Q ss_pred hhcCCccchhhH-HHhHhhcccceeeecccCC-------CCCCccceeEcCeeec--CceeecccccccccCChhhHHHH
Q 017492 25 YYASGAEDQWTL-QENRNAFSRILFRPRILID-------VSKIDMNTTVLGFKIS--MPIMIAPTAMQKMAHPEGEYATA 94 (370)
Q Consensus 25 y~~~ga~~~~t~-~~n~~~~~~i~l~pr~l~~-------~~~vd~s~~l~g~~l~--~Pi~iapm~~~~~~~~~~e~~la 94 (370)
.+-|--||+..+ .....++.-+.=+-|+..+ ...-++.+++.+..+. .|++||=... .-+.+--+.+|
T Consensus 49 ~~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~a 126 (350)
T 1vr6_A 49 TVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMETA 126 (350)
T ss_dssp EEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHHH
T ss_pred EEEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHHH
Confidence 344555666655 3445555555444444432 2333455555443331 3666664332 11233335799
Q ss_pred HHHHHcCCceeecC-CCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhc
Q 017492 95 RAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (370)
Q Consensus 95 ~aa~~~G~~~~~s~-~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~ 173 (370)
++++++|..++-.. +...+ . +..|| .-..+....+.+.+++.|...+. ++--|. .-+.-..+
T Consensus 127 ~~~k~aGa~~vr~q~fKprT-------s--~~~f~---glg~egl~~l~~~~~e~Gl~~~t-e~~d~~----~~~~l~~~ 189 (350)
T 1vr6_A 127 HFLSELGVKVLRGGAYKPRT-------S--PYSFQ---GLGEKGLEYLREAADKYGMYVVT-EALGED----DLPKVAEY 189 (350)
T ss_dssp HHHHHTTCCEEECBSCCCCC-------S--TTSCC---CCTHHHHHHHHHHHHHHTCEEEE-ECSSGG----GHHHHHHH
T ss_pred HHHHHcCCCeeeeeEEeCCC-------C--hHhhc---CCCHHHHHHHHHHHHHcCCcEEE-EeCCHH----HHHHHHHh
Confidence 99999998865432 22111 1 11233 11245555555566778876654 221111 11111001
Q ss_pred CCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC--CHHHHH----HHHHcCc
Q 017492 174 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAEDAR----IAVQAGA 247 (370)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~--~~~~a~----~a~~aG~ 247 (370)
++ -+. + +.. ...+...++++. .++.||++|..+ +.++.. .+...|.
T Consensus 190 -vd-~lk------I-------------gAr------~~~n~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN 241 (350)
T 1vr6_A 190 -AD-IIQ------I-------------GAR------NAQNFRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGN 241 (350)
T ss_dssp -CS-EEE------E-------------CGG------GTTCHHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred -CC-EEE------E-------------Ccc------cccCHHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCC
Confidence 00 000 0 000 011455677776 479999999753 666643 4456788
Q ss_pred cEEEEccCCccCCCC---ccchHHHHHHHHHHccCCCcEEEec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHHH-
Q 017492 248 AGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSLA- 317 (370)
Q Consensus 248 d~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvi~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~~~- 317 (370)
+-+++.-+|.+.... -...+..++.+++.. .+||+++. |-+. ..=...++++||++++|=+-+--.-+
T Consensus 242 ~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~al 319 (350)
T 1vr6_A 242 TKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKAL 319 (350)
T ss_dssp CCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCS
T ss_pred CeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccCC
Confidence 777776566654321 112344666666654 68998844 4332 23345578899999999875421100
Q ss_pred hcCHHH-HHHHHHHHHHHHHHHHHHcC
Q 017492 318 AEGEKG-VRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 318 ~~G~~~-v~~~l~~l~~el~~~m~~~G 343 (370)
+.|... --+-++.|.++++..-..+|
T Consensus 320 ~D~~~sL~p~e~~~lv~~ir~i~~alg 346 (350)
T 1vr6_A 320 SDGKQSLDFELFKELVQEMKKLADALG 346 (350)
T ss_dssp SCGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred CchhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 122110 01234556666666655555
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.58 E-value=6.4 Score=36.93 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=101.9
Q ss_pred ceeecccc-cccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------cc-CC-CceEEEEeecCChHH
Q 017492 73 PIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm~-~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~-~~-~~~~~Qly~~~d~~~ 137 (370)
|-++.|+. -.+-.+.+.-..+.+-..+.|+...+ + +..+.+.+|.. +. .+ -+.+...- ..+-..
T Consensus 16 ~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 94 (318)
T 3qfe_A 16 CPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTRQ 94 (318)
T ss_dssp EECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHHH
T ss_pred EeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 44566664 22223333334666667777876443 2 33456666532 11 12 35566643 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|.. |.-|. +.+-..+..
T Consensus 95 ai~la~~a~~~Gadavlv~--~P~y----------~~kp~-------------------------------~~~~l~~~f 131 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVL--PPAY----------FGKAT-------------------------------TPPVIKSFF 131 (318)
T ss_dssp HHHHHHHHHHHTCSEEEEC--CCCC-------------CC-------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEe--CCcc----------cCCCC-------------------------------CHHHHHHHH
Confidence 7788999999999999873 3421 00000 000123445
Q ss_pred HHHHHhcCCcEEEEec--------CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHcc-CCCcEEEe
Q 017492 218 KWLQTITKLPILVKGV--------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLD 286 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v--------~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvi~~ 286 (370)
+.|.+.+++||++=.+ ++++...++.+ . .+-+|.-+. ..+..+.++.+.+. ++..|+.
T Consensus 132 ~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~v~~- 200 (318)
T 3qfe_A 132 DDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVKLTC----------ASVGKITRLAATLPPAAFSVFG- 200 (318)
T ss_dssp HHHHHHCSSCEEEEECCC----CCCCHHHHHHHHHHCTTEEEEEESS----------CCHHHHHHHHHHSCGGGCEEEE-
T ss_pred HHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCEEEEE-
Confidence 6677778899988654 45677777765 3 344444432 13445555555442 2444443
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
| +...++.++++|++++.-+.+
T Consensus 201 G---~d~~~l~~l~~G~~G~is~~a 222 (318)
T 3qfe_A 201 G---QSDFLIGGLSVGSAGCIAAFA 222 (318)
T ss_dssp S---CGGGHHHHHHTTCCEEECGGG
T ss_pred e---cHHHHHHHHHCCCCEEEecHH
Confidence 3 224567889999999998874
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=90.57 E-value=1.5 Score=43.02 Aligned_cols=88 Identities=9% Similarity=-0.095 Sum_probs=65.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ +.+|.+..- .+.++| +.+.+.|++.|.=- ..+..++.+.++++.. .+||+
T Consensus 212 d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 281 (424)
T 3v3w_A 212 IPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDA--------VPAENQESFKLIRQHT--TTPLA 281 (424)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChHhHHHHHHHHhhC--CCCEE
Confidence 466799999997 578888743 466664 45567788887421 1122456677787776 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
+++.+.+..++.+++..| +|.|++--
T Consensus 282 ~dE~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 282 VGEVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EccCcCCHHHHHHHHHcCCCCeEeecc
Confidence 999999999999999988 79998863
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.57 E-value=10 Score=34.70 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=30.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++|||.|.+-. .+ .+...+|.+.+ ++|+|.-|
T Consensus 165 ~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (264)
T 1m3u_A 165 SDALALEAAGAQLLVLEC---------VP-VELAKRITEAL--AIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHTCCEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHCCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 568889999999999832 33 35677888887 79999866
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=10 Score=34.88 Aligned_cols=180 Identities=14% Similarity=0.044 Sum_probs=101.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHH-cCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~-~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
|.++-|+.-.+-.+.+.-..+++-..+ .|+...+ + ++.+.+.||-. +... -+.+...- ..+-+.
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 87 (293)
T 1f6k_A 9 SALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKE 87 (293)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHH
Confidence 455666643322333333466666667 8875443 3 33456766532 1212 24455542 335566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..- . | + .+-..+..
T Consensus 88 ai~la~~a~~~Gadavlv~--~P~y~----------~-~---~-----------------------------~~~l~~~f 122 (293)
T 1f6k_A 88 AVELGKYATELGYDCLSAV--TPFYY----------K-F---S-----------------------------FPEIKHYY 122 (293)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSS----------C-C---C-----------------------------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC----------C-C---C-----------------------------HHHHHHHH
Confidence 7788899999999999875 34320 0 0 0 00123345
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.+ .+++...++.+. .+-+|.-+. ..+..+.++.+.. ++..|+ +|.
T Consensus 123 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~----------gd~~~~~~~~~~~-~~f~v~-~G~- 189 (293)
T 1f6k_A 123 DTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTA----------GDFYLLERLKKAY-PNHLIW-AGF- 189 (293)
T ss_dssp HHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHC-TTSEEE-ECC-
T ss_pred HHHHHhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhC-CCeEEE-ECc-
Confidence 6666777899998663 567777776653 233444332 1234444555442 345444 342
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
...++.++++|++++..+.+-+
T Consensus 190 --d~~~~~~l~~G~~G~is~~~n~ 211 (293)
T 1f6k_A 190 --DEMMLPAASLGVDGAIGSTFNV 211 (293)
T ss_dssp --GGGHHHHHHTTCSEEEESTHHH
T ss_pred --HHHHHHHHHCCCcEEEeCHHHh
Confidence 2347788999999999988543
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=1.7 Score=41.63 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.++.+.+.|+|.|.+ |+| .+..+.+..+++. .++|+. .+.+.+++.++...|+|+|.+
T Consensus 112 ~~~~~~~~~~g~~~V~~--~~g------~~~~~~i~~~~~~---g~~v~~--~v~t~~~a~~a~~~GaD~i~v 171 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSF--HFG------VPDREVIARLRRA---GTLTLV--TATTPEEARAVEAAGADAVIA 171 (369)
T ss_dssp HHHHHHHHHSCCSEEEE--ESS------CCCHHHHHHHHHT---TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEE--eCC------CCcHHHHHHHHHC---CCeEEE--ECCCHHHHHHHHHcCCCEEEE
Confidence 34578889999999988 333 2334566666552 567776 478999999999999999999
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.9 Score=40.06 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++++. .++.||++|..+ ++++ ++.+.+.|.+-|++.-.|-+ ..... ..+..++.+++.. ..+||+
T Consensus 123 n~~LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~-y~~~~~~vdl~~i~~lk~~~-~~~pV~ 199 (285)
T 3sz8_A 123 QTDLVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS-FGYDNLVVDMLGFRQMAETT-GGCPVI 199 (285)
T ss_dssp CHHHHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE-CSSSCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-CCCCcCccCHHHHHHHHHhC-CCCCEE
Confidence 455677765 479999999763 5544 45566789888887543321 11111 2455677776654 248999
Q ss_pred Eec---------------CCCCH-H-HHHHHHHhCCCEEEEcHH
Q 017492 285 LDG---------------GVRRG-T-DVFKALALGASGIFIGRP 311 (370)
Q Consensus 285 ~~G---------------GI~~~-~-dv~kalalGAd~V~igr~ 311 (370)
.|. |-|.- . -...|+++|||+++|=.-
T Consensus 200 ~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H 243 (285)
T 3sz8_A 200 FDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH 243 (285)
T ss_dssp EETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence 863 32221 2 345688899999998763
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=90.39 E-value=3.5 Score=39.40 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=58.8
Q ss_pred cHHHHHHHHHhc-CCcEEEEe--cCCHHH---HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 213 SWKDVKWLQTIT-KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~--v~~~~~---a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.+.++.+|+.+ ++++.+.. ..+.++ ++.+.+.|++.|. +. ..+..++.+.++++.. .+||+++
T Consensus 176 d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~d 245 (375)
T 1r0m_A 176 DVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIE-------QP-LAWDDLVDHAELARRI--RTPLCLD 245 (375)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHTTGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeCCCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCEEec
Confidence 455677777766 56676663 123333 3334456776663 10 1123456777777776 7999999
Q ss_pred cCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 287 GGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+-+.+..|+.+++..| +|.|++-
T Consensus 246 E~~~~~~~~~~~i~~~~~d~v~ik 269 (375)
T 1r0m_A 246 ESVASASDARKALALGAGGVINLK 269 (375)
T ss_dssp TTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CccCCHHHHHHHHHhCCCCEEEEC
Confidence 9999999999999988 8999983
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=8.4 Score=35.99 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCc-cchHHHHHHHHHHccCCCcEEEecCC-------------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGV------------------- 289 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GGI------------------- 289 (370)
.+|++|+... +.|+|.+-++- ||-+..++. .-.++.|.+|.+.+ .+|+..=||=
T Consensus 153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~~ 230 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhcccccc
Confidence 5688887765 59999999873 565432221 23568899999988 6999988865
Q ss_pred --C-CHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 290 --R-RGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 290 --~-~~~dv~kalalGAd~V~igr~~l~~~~~-------~G-----~-~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
. .-+++.+++.+|..-|-+++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 231 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 302 (305)
T 1rvg_A 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 3477888999999999999977554221 01 1 113333456777777788887764
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=1.6 Score=41.80 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
+++.+.++++.+ ++||+.-+ +.+.+|+.+++.+|||+|.+.
T Consensus 258 ~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 258 SIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 677788887777 78998864 689999999999999999884
|
| >3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.88 Score=43.26 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=67.1
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-----c--------cchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-----~--------~~~~~~l~~i~~~~ 277 (370)
+|+-++.++.. -++++-+=.+.+...+..+.++|+..|... -||-.|+ + -+.+..+.++.+.+
T Consensus 140 T~eGl~A~~~L~~~GI~~N~TliFS~~Qa~~aa~AGa~~ISPF--VgRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y 217 (334)
T 3hjz_A 140 TWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITLISPF--VGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYF 217 (334)
T ss_dssp SHHHHHHHHHHHHTTCCEEEESCCSHHHHHHHHHTTCSEECCB--HHHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEee--ccHHHHHhhhccCCcccccccCcHHHHHHHHHHHH
Confidence 56544444433 388998888999999999999999988652 1221111 1 12344555554433
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+.+..|++. .+|+..++.. .+|+|.+-+.-.++..+.
T Consensus 218 ~~~g~~T~vl~A-SfRn~~~v~~--laG~d~~Tipp~ll~~L~ 257 (334)
T 3hjz_A 218 KEKGFKTEVMGA-SFRNLDEIKE--LAGCDLLTIAPKFLEELK 257 (334)
T ss_dssp HHHTCCCEEEEB-CCSSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred HHcCCCCEEEEe-cCCCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence 345666665 5999999986 469999999988877654
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=90.13 E-value=1.9 Score=40.16 Aligned_cols=84 Identities=25% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c--c-CCCCccchHHH-HHHHHHHcc-CCCcEEEec--CCCCHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A--R-QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG--GVRRGTDVF 296 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g--~-~~~~~~~~~~~-l~~i~~~~~-~~ipvi~~G--GI~~~~dv~ 296 (370)
+-|+.+-++-+.-.|+.+.++|+|+|.+|+.+ + . ..|.++-+++. +..+....+ .++||++|. |..++.++.
T Consensus 14 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~ 93 (290)
T 2hjp_A 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVH 93 (290)
T ss_dssp CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHH
Confidence 56888888899999999999999999998631 1 1 13445555543 222222221 279999987 555665554
Q ss_pred H----HHHhCCCEEEE
Q 017492 297 K----ALALGASGIFI 308 (370)
Q Consensus 297 k----alalGAd~V~i 308 (370)
+ .+..||++|.+
T Consensus 94 ~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 94 YVVPQYEAAGASAIVM 109 (290)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCCeEEEE
Confidence 3 55689999987
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.91 Score=42.27 Aligned_cols=94 Identities=21% Similarity=0.278 Sum_probs=58.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCc------cEEEEccCCccCCCCcc--chHHHHHHHHHHcc
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGA------AGIIVSNHGARQLDYVP--ATIMALEEVVKATQ 278 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~------d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~ 278 (370)
+.+.++++. .++.||++|..+ ++++ ++.+.+.|. +-|++.-.|- ...... ..+..++.+++ .
T Consensus 120 n~~LLr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~-~y~~~~~~vdl~~i~~lk~-~- 195 (288)
T 3tml_A 120 QTDFIHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGV-SFGYNNLVSDMRSLAIMRE-T- 195 (288)
T ss_dssp CHHHHHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCE-ECSSSCEECCHHHHHHGGG-G-
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCC-CCCCCcCcCCHHHHHHHHh-c-
Confidence 444566654 579999999763 6654 345556777 6677653332 111111 25667777665 4
Q ss_pred CCCcEEEe---------------cCCCCHH--HHHHHHHhCCCEEEEcHH
Q 017492 279 GRIPVFLD---------------GGVRRGT--DVFKALALGASGIFIGRP 311 (370)
Q Consensus 279 ~~ipvi~~---------------GGI~~~~--dv~kalalGAd~V~igr~ 311 (370)
.+||+.| ||-|.-. -...|+++|||+++|=.-
T Consensus 196 -~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H 244 (288)
T 3tml_A 196 -NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETH 244 (288)
T ss_dssp -SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEE
T ss_pred -CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeec
Confidence 7999985 4544432 345688899999999763
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.08 E-value=4.1 Score=38.75 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEe--cCCHHH---HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 213 SWKDVKWLQTIT-KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~--v~~~~~---a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.+.++.+|+.+ ++++.+-. ..+.++ ++.+.+.|++.|.= . ..+..++.+.++++.. .+||+++
T Consensus 169 d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~ipIa~d 238 (369)
T 2zc8_A 169 DYEVLKAVREAFPEATLTADANSAYSLANLAQLKRLDELRLDYIEQ-------P-LAYDDLLDHAKLQREL--STPICLD 238 (369)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHGGGGGCCSCEEC-------C-SCTTCSHHHHHHHHHC--SSCEEES
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHhCCCcEEEC-------C-CCcccHHHHHHHHhhC--CCCEEEc
Confidence 455677777766 56666653 123332 33344567666641 0 1123456777777766 7999999
Q ss_pred cCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 287 GGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
.-+.+..|+.+++..| +|.|++-
T Consensus 239 E~~~~~~~~~~~i~~~~~d~v~ik 262 (369)
T 2zc8_A 239 ESLTGAEKARKAIELGAGRVFNVK 262 (369)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred CccCCHHHHHHHHHhCCCCEEEEc
Confidence 9999999999999988 8999984
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=90.06 E-value=0.34 Score=43.79 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+ +.|+++.+ +.++++|+.+.+ |+|+++|++
T Consensus 173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGS 215 (235)
T 3w01_A 173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGD 215 (235)
T ss_dssp CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECC
Confidence 678899999999 89999986 689999999887 999999954
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.95 Score=43.25 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..|+.++++++.+ ++||+.- ++.+.+|+.+++.+|||+|.+.
T Consensus 260 ~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ig 304 (345)
T 3oix_A 260 TALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG 304 (345)
T ss_dssp HHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEC
Confidence 4688999999998 6998764 5789999999999999999984
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.27 Score=43.72 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH---H------HHHHHHhCCCEEEE
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFI 308 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~---d------v~kalalGAd~V~i 308 (370)
.++. .+.|+| ++.+. +.+..+++.++ .+ ++++||+--. | ..+ +..|||.+.+
T Consensus 131 ~a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVv 191 (213)
T 1vqt_A 131 IEKL-NKLGCD-FVLPG-------------PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVL 191 (213)
T ss_dssp HHHH-HHHTCE-EECCH-------------HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEE
T ss_pred HHHH-hcCCCE-EEEcH-------------HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEE
Confidence 3566 788999 54321 34555555442 35 8889996432 2 667 8899999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
||+++.
T Consensus 192 GR~I~~ 197 (213)
T 1vqt_A 192 GREIYL 197 (213)
T ss_dssp SHHHHT
T ss_pred ChhhcC
Confidence 999875
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=89.71 E-value=1.8 Score=40.35 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+.++...++|||.|.+ ++ +.++.+.+.++.+.+...+|+++.-+-....++.+.-++|.+.|.+|...+.+
T Consensus 174 ~Ra~ay~eAGAd~i~~--e~------~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 244 (295)
T 1s2w_A 174 KRAEAYRNAGADAILM--HS------KKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 244 (295)
T ss_dssp HHHHHHHHTTCSEEEE--CC------CSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHHHHHHHcCCCEEEE--cC------CCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 4578889999999998 21 13456777888888744599998733111112445556899999999887765
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.64 E-value=0.41 Score=43.45 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++++.+ ++|+.+.+ +.++++++.+.+ |||+|+|++
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 578899999999 99999986 689999999999 999999953
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=89.57 E-value=1.6 Score=41.22 Aligned_cols=68 Identities=25% Similarity=0.239 Sum_probs=49.2
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~---~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.++...++|||.|.+- ++++.+.+.++.+.+ ++|+++ .+|-...-++.+.-++|.+.|.+|...+
T Consensus 193 ~Ra~Ay~eAGAd~i~~e---------~~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 193 RRANLYKEAGADATFVE---------APANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp HHHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred HHHHHHHHcCCCEEEEc---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 45788899999999982 346678888898888 689853 3432222234455578999999999877
Q ss_pred HH
Q 017492 314 YS 315 (370)
Q Consensus 314 ~~ 315 (370)
.+
T Consensus 262 ra 263 (318)
T 1zlp_A 262 YA 263 (318)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.57 E-value=1.7 Score=40.47 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c-c---CCCCccchHHH-HHHHHHHcc-CCCcEEEec--CCCCHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG--GVRRGTDV 295 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g-~---~~~~~~~~~~~-l~~i~~~~~-~~ipvi~~G--GI~~~~dv 295 (370)
+-|+.+-++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++. +..+....+ .++||++|. |..++.++
T Consensus 20 ~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~ 99 (287)
T 3b8i_A 20 SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNV 99 (287)
T ss_dssp SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHH
Confidence 56888888889999999999999999998652 1 1 23455555543 333322221 378999987 55576655
Q ss_pred HH----HHHhCCCEEEEc
Q 017492 296 FK----ALALGASGIFIG 309 (370)
Q Consensus 296 ~k----alalGAd~V~ig 309 (370)
.+ .+..||++|.|=
T Consensus 100 ~~~v~~l~~aGa~gv~iE 117 (287)
T 3b8i_A 100 MRTVVELERAGIAALTIE 117 (287)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhCCeEEEEc
Confidence 43 556899999883
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.55 E-value=1.6 Score=40.39 Aligned_cols=97 Identities=22% Similarity=0.326 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHHHHH----HHHcCccEEEEccCCccCCCC---ccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAEDARI----AVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~a~~----a~~aG~d~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipv 283 (370)
+...++++. .++.||++|..+ ++++... +...|.+-|++.-.|.+.... -...+..++.+++.. .+||
T Consensus 134 n~~ll~~~a-~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpV 210 (276)
T 1vs1_A 134 NFPLLREVG-RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPV 210 (276)
T ss_dssp CHHHHHHHH-HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCE
T ss_pred CHHHHHHHH-ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCE
Confidence 445566665 469999999753 6666433 456787666664335543311 223556677777655 6899
Q ss_pred EEec----CCCC--HHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDG----GVRR--GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~G----GI~~--~~dv~kalalGAd~V~igr~~ 312 (370)
+++. |.+. ..=...++++||++++|=+-+
T Consensus 211 i~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 211 IVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp EECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 8753 4432 233455788999999998754
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=89.52 E-value=3.1 Score=36.20 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++++ ++.|+++.| +.+.|++.. .++||++|+.|+
T Consensus 141 p~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~ 178 (188)
T 1vkf_A 141 PKVARKI---PGRTVIAAGLVETEEEARE-ILKHVSAISTSS 178 (188)
T ss_dssp HHHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred HHHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence 3456666 689999987 589999999 999999999986
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1.7 Score=41.88 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=35.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
+|+.+.++++.+ ++||+.=+ +.+.+|+.+++..|||+|.++
T Consensus 270 ~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 270 SFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 677888888877 69998754 689999999999999999884
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=3.1 Score=40.96 Aligned_cols=88 Identities=9% Similarity=-0.082 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ ++++.+..- .+.++|. .+.+.|++.|.= ...+..++.+.++++.. .+||+
T Consensus 226 d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 295 (440)
T 3t6c_A 226 IPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED--------PVAPENTEWLKMLRQQS--STPIA 295 (440)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC--------SSCGGGGGGHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEEC--------CCChhhHHHHHHHHhhc--CCCEE
Confidence 456789999987 578888753 5666654 344667777741 01122456677787776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++.-+.+..|+.+++..| +|.|++--
T Consensus 296 ~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 296 MGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred eCcccCCHHHHHHHHHcCCccceeech
Confidence 999999999999999987 79988764
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=89.24 E-value=3.5 Score=39.73 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=62.9
Q ss_pred cHHHHHHHHHhc-CCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+.+.++.+|+.+ +.++.+..- .+.++ ++.+.+.|++.|.= ...+..++.+.++++.. .+||.+
T Consensus 179 d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 248 (385)
T 3i6e_A 179 DIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQ--------PVRAHHFELMARLRGLT--DVPLLA 248 (385)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEEC--------CSCTTCHHHHHHHHTTC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHHhC--CCCEEE
Confidence 456788888886 567777642 33433 45566778777641 11123466777777655 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+.-+.+..|+.+++..| +|.|++--.
T Consensus 249 dE~~~~~~~~~~~~~~~~~d~v~~k~~ 275 (385)
T 3i6e_A 249 DESVYGPEDMVRAAHEGICDGVSIKIM 275 (385)
T ss_dssp STTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence 99999999999999987 799988643
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=89.21 E-value=14 Score=34.32 Aligned_cols=182 Identities=13% Similarity=0.125 Sum_probs=101.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|-++.|+.-.+-.+.+.-..+++-..+.|+...+ + +..+.+.+|.. +... -+.+...- ..+-+.
T Consensus 19 ~~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ 97 (307)
T 3s5o_A 19 YPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQA 97 (307)
T ss_dssp ECBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHH
T ss_pred EEeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHH
Confidence 35556676433323333333555566667875443 2 33456666532 2222 23444432 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|+++|++++.+. +|..-+ | +. +.+-..+..
T Consensus 98 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-~~-----------------------------s~~~l~~~f 134 (307)
T 3s5o_A 98 TVEMTVSMAQVGADAAMVV--TPCYYR-----------G-RM-----------------------------SSAALIHHY 134 (307)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCTTG-----------G-GC-----------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCcCC-----------C-CC-----------------------------CHHHHHHHH
Confidence 7788899999999999874 343200 0 00 000123445
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHc-cCCCcEEEecC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT-QGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-~~~ipvi~~GG 288 (370)
+.|.+.+++||++=.+ .+++...++.+.. +-+|.-+. ..+..+.++.+.. +++..|+ +|.
T Consensus 135 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~v~-~G~ 203 (307)
T 3s5o_A 135 TKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSG----------GDVTRIGLIVHKTRKQDFQVL-AGS 203 (307)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHTTTSSCEEE-ESS
T ss_pred HHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEcCC----------CCHHHHHHHHHhccCCCeEEE-eCc
Confidence 6677778999998764 5677777776532 33333321 1344555555544 2355554 442
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...++.++++|++++..+.+
T Consensus 204 ---d~~~l~~l~~G~~G~is~~a 223 (307)
T 3s5o_A 204 ---AGFLMASYALGAVGGVCALA 223 (307)
T ss_dssp ---GGGHHHHHHHTCCEEECGGG
T ss_pred ---HHHHHHHHHcCCCEEEechh
Confidence 23577889999999998874
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.4 Score=43.36 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++++.+ ++|+.+.+ +.++++++.+.+ |||+|+|++
T Consensus 177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 678899999999 99999986 689999999999 999999953
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=88.86 E-value=3.3 Score=39.75 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.++.+.++++.. ++||++ +|+.+.+++..++.+|||+|.++.
T Consensus 213 ~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 213 SWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp CHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence 345667777665 799996 778999999999999999999953
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=6 Score=36.41 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH----HHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~ipvi 284 (370)
+...++++++. +-|+.+-+.-+.-.|+.+.++|+|.|.++...+. ..|..+-+++. ...+.+.. +..+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~-~~~~vv 82 (275)
T 1o66_A 5 TVNTLQKMKAA-GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA-KNAMIV 82 (275)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-SSSEEE
T ss_pred CHHHHHHHHhC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC-CCCeEE
Confidence 45556666543 5688888888999999999999999976433221 13445555543 23333433 245788
Q ss_pred EecCC----CCHHHHH----HHHHhCCCEEEE
Q 017492 285 LDGGV----RRGTDVF----KALALGASGIFI 308 (370)
Q Consensus 285 ~~GGI----~~~~dv~----kalalGAd~V~i 308 (370)
+|=+. .++++++ +.+..||++|-+
T Consensus 83 aD~pfgsy~~s~~~a~~na~rl~kaGa~aVkl 114 (275)
T 1o66_A 83 SDLPFGAYQQSKEQAFAAAAELMAAGAHMVKL 114 (275)
T ss_dssp EECCTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EECCCCCccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 98554 3577776 477799999988
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=88.62 E-value=2.6 Score=39.49 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=60.8
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCc--c---CCCCccchHH-HHHHHHHHcc--CCCcEEEec-
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA--R---QLDYVPATIM-ALEEVVKATQ--GRIPVFLDG- 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg--~---~~~~~~~~~~-~l~~i~~~~~--~~ipvi~~G- 287 (370)
++++.+.-+.|+++-++-+.-.|+.+.++|+|+|.+|+.+- . ..|.++.+++ .+..+....+ .++||++|.
T Consensus 9 Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d 88 (302)
T 3fa4_A 9 LRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADAD 88 (302)
T ss_dssp HHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECT
T ss_pred HHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECC
Confidence 44444433457877888899999999999999999975321 0 1355555554 3333332222 279999998
Q ss_pred -CCCCHHHHH----HHHHhCCCEEEEcH
Q 017492 288 -GVRRGTDVF----KALALGASGIFIGR 310 (370)
Q Consensus 288 -GI~~~~dv~----kalalGAd~V~igr 310 (370)
|..++.++. +....||.+|.|=-
T Consensus 89 ~Gyg~~~~v~~tv~~l~~aGaagv~iED 116 (302)
T 3fa4_A 89 TGYGGPIMVARTTEQYSRSGVAAFHIED 116 (302)
T ss_dssp TTTSSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 555655543 34558999997743
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=88.45 E-value=3.8 Score=36.57 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=35.2
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++|+.. +.|+.|-|..+++.+..+.++|+|.++++
T Consensus 156 ~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 156 MMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 566788998876 58888888788999999999999999884
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=88.36 E-value=3.4 Score=38.78 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c-c---CCCCccchHHH-HHHHHHHcc--C-CCcEEEe
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIMA-LEEVVKATQ--G-RIPVFLD 286 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g-~---~~~~~~~~~~~-l~~i~~~~~--~-~ipvi~~ 286 (370)
.++++.+.-+.|+++-++-+.-.|+.+.++|+|+|.+|+.+ + . ..|.++.+++. +..+....+ . ++||++|
T Consensus 15 ~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD 94 (307)
T 3lye_A 15 KLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIAD 94 (307)
T ss_dssp HHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEE
T ss_pred HHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEE
Confidence 45554444346788888899999999999999999997532 1 0 23555555543 333322222 2 4999999
Q ss_pred c--CCCCHHHHH----HHHHhCCCEEEEc
Q 017492 287 G--GVRRGTDVF----KALALGASGIFIG 309 (370)
Q Consensus 287 G--GI~~~~dv~----kalalGAd~V~ig 309 (370)
. |..++.++. +.+..||.+|.|=
T Consensus 95 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 123 (307)
T 3lye_A 95 MDTGYGGPIMVARTVEHYIRSGVAGAHLE 123 (307)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 8 555655543 3455899999774
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=4.9 Score=45.29 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=85.2
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEE-EecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVF-LDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi-~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++|..|++.|+..|++|..+-..-....|.+-++..+..++ +.++-++ =+|-+|+.-|++-.+-.||++|.=.-
T Consensus 591 ~~a~~av~~g~~iliLsDr~~~~~~~~ip~lla~~avh~~L~~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av~Pyl 670 (1479)
T 1ea0_A 591 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 670 (1479)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCccCcCHHHHHHHHHHHHHhcCccccceEEEEeCCchhHHHHHHHHhcCccccCHHH
Confidence 45778888999999999764321112345555555555554 3345554 46778999999888889999997443
Q ss_pred HH--HHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 311 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 311 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+| +..+...| .+.+.++.+.+.++|...|..+|.+.+..-++..+.-
T Consensus 671 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiFe 726 (1479)
T 1ea0_A 671 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFE 726 (1479)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCEE
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceeee
Confidence 33 22222223 3578999999999999999999999999988776654
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=1.7 Score=41.89 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=35.4
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~vs 253 (370)
.|+.++++++.+++||+.-+..+++++..+++.| +|+|.+.
T Consensus 287 ~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~ig 328 (377)
T 2r14_A 287 PEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFG 328 (377)
T ss_dssp CTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred hHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeec
Confidence 3567889999999999987766899999999998 9999883
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=88.12 E-value=1.9 Score=40.18 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=57.9
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHHH----HHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++++. .++.||++|..+ ++++. ..+...|.+-+.+.-.|++. .... ..+..++.+++.. ..+||+
T Consensus 121 n~~Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~-~y~~~~~dl~~i~~lk~~~-~~~pV~ 197 (292)
T 1o60_A 121 QTDLVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNF-GYDNLIVDMLGFSVMKKAS-KGSPVI 197 (292)
T ss_dssp CHHHHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHhhC-CCCCEE
Confidence 456778876 579999999763 56553 34456788666665445421 1111 2445566665543 258999
Q ss_pred Ee-----------cCCCCH-----HHHH-HHHHhCCCEEEEcHHH
Q 017492 285 LD-----------GGVRRG-----TDVF-KALALGASGIFIGRPV 312 (370)
Q Consensus 285 ~~-----------GGI~~~-----~dv~-kalalGAd~V~igr~~ 312 (370)
.| |+-..+ ..+. .++++||++++|=+-+
T Consensus 198 ~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 198 FDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp EEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred EECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 94 233333 2333 5678999999998754
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.08 E-value=5.9 Score=36.27 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH----HHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~ipvi 284 (370)
+...++++++. +-|+.+=+.-+.-.|+.+.++|+|.|.++...+. ..|..+-+++. ...+.+.. +..+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vv 82 (264)
T 1m3u_A 5 TISLLQKYKQE-KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLL 82 (264)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEE
Confidence 45556666543 5688888888999999999999999998432221 12445555543 23334433 246788
Q ss_pred EecCCC---CHHHHH----HHHHhCCCEEEE
Q 017492 285 LDGGVR---RGTDVF----KALALGASGIFI 308 (370)
Q Consensus 285 ~~GGI~---~~~dv~----kalalGAd~V~i 308 (370)
+|=+.. +.++++ +.+..||++|-+
T Consensus 83 aD~pfgsy~~~~~a~~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 83 ADLPFMAYATPEQAFENAATVMRAGANMVKI 113 (264)
T ss_dssp EECCTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred EECCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887665 777776 467789999988
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=1.7 Score=42.09 Aligned_cols=88 Identities=5% Similarity=-0.056 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCC
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGR 280 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ 280 (370)
...+.++.+|+.+ ++++.+-. ..+.+++.. +.+.|++.|.= . .. ..++.+.++++.+ +.+
T Consensus 186 ~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~-------P-~~-~d~~~~~~l~~~l~~~g~~ 256 (392)
T 3p3b_A 186 RDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEE-------A-FH-EDEALYEDLKEWLGQRGQN 256 (392)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEEEEEC-------S-SS-CCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEec-------C-Cc-ccHHHHHHHHHhhccCCCC
Confidence 3567899999977 57887753 246666543 33456555431 0 11 3567777787761 027
Q ss_pred CcEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 281 IPVFLDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+||++++ +.+..++.+++..| +|.|++-
T Consensus 257 iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 257 VLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp CEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred ccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999 99999999999998 7998884
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=2.2 Score=41.41 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=34.4
Q ss_pred cHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
+++.+.++++.+ ++||+.= ++.+.+|+.+++.+|||+|.++
T Consensus 293 ~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 293 TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp HHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence 577788888776 5999885 4789999999999999999884
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=87.67 E-value=2.2 Score=39.84 Aligned_cols=90 Identities=24% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-cc---CCCCccchHH----HHHHHHHHccCCCcEEEec-
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~---~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G- 287 (370)
++++.+ .+-|+.+-++-+.-.|+.+.++|+|+|.+|+.+ +. ..|.++-+++ .+..|.+.. ++||++|.
T Consensus 11 lr~l~~-~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~d 87 (295)
T 1s2w_A 11 LKQMLN-SKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDAD 87 (295)
T ss_dssp HHHHHH-SSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECC
T ss_pred HHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEecCC
Confidence 444443 256888888899999999999999999998632 11 1233333333 233444433 79999997
Q ss_pred -CCCCHHHHH----HHHHhCCCEEEEc
Q 017492 288 -GVRRGTDVF----KALALGASGIFIG 309 (370)
Q Consensus 288 -GI~~~~dv~----kalalGAd~V~ig 309 (370)
|..+..++. +.+..||.+|.|=
T Consensus 88 ~Gyg~~~~v~~~v~~l~~aGaagv~iE 114 (295)
T 1s2w_A 88 TGYGNFNNARRLVRKLEDRGVAGACLE 114 (295)
T ss_dssp SSCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 555655544 3556899999873
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=5.3 Score=35.04 Aligned_cols=87 Identities=22% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHHHHHhc-CCcE--EEEecCCHH-HHHHHHHcCccEEEEccCCccCCCCccchHH-HHHHHHHHccCCCcEEE-ec
Q 017492 214 WKDVKWLQTIT-KLPI--LVKGVLTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFL-DG 287 (370)
Q Consensus 214 ~~~i~~ir~~~-~~Pv--~vK~v~~~~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvi~-~G 287 (370)
.+.++++|+.+ +.|+ -+|....++ .++.+.++|+|+|++...++ ...+. .+..+.+. .++.++ .=
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~~---g~~~~~d~l 117 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADEL---NGEIQIEIY 117 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHHh---CCccceeee
Confidence 46789999884 5555 456654444 47889999999999943221 12222 33333332 455554 34
Q ss_pred CCCCHHHHHHHHHhCCCEEEEc
Q 017492 288 GVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~ig 309 (370)
|+.|.+++..+...|+|.+.+.
T Consensus 118 ~~~T~~~~~~~~~~g~d~v~~~ 139 (218)
T 3jr2_A 118 GNWTMQDAKAWVDLGITQAIYH 139 (218)
T ss_dssp SSCCHHHHHHHHHTTCCEEEEE
T ss_pred ecCCHHHHHHHHHcCccceeee
Confidence 5678888988888999987653
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.49 E-value=2.5 Score=40.43 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.|.+.+.+.+++.+++|++-+-+++... .
T Consensus 43 ~D~~atv~Qi~~l~~aG~diVRvavp~~---------------------------------------------------~ 71 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCEIVRVAVPHK---------------------------------------------------E 71 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEECCSH---------------------------------------------------H
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCh---------------------------------------------------H
Confidence 4567777888888999999988875310 0
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..+.+++|++.+++|++.=.-+++..|..++++|+|.+.+-
T Consensus 72 ~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRIN 112 (366)
T 3noy_A 72 DVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRIN 112 (366)
T ss_dssp HHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEEC
Confidence 24568889999999998776689999999999999998873
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=87.48 E-value=3 Score=37.99 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=60.3
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-cc---CCCCccchHH----HHHHHHHHccCCCcEEEec-
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~---~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G- 287 (370)
++++++. +-|+++-++-+.-.|+.+.++|+|.|.+++.+ +. ..|.++-+++ ....|.+.. ++||++|.
T Consensus 12 lr~l~~~-~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~--~~pviaD~~ 88 (255)
T 2qiw_A 12 FASDHES-GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV--SIPVSVDVE 88 (255)
T ss_dssp HHHHHHT-CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC--SSCEEEECT
T ss_pred HHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC--CCCEEeccC
Confidence 4444432 56888777888999999999999999998531 11 1244444544 334444444 69999987
Q ss_pred -CCCC--HHHHHHHHHhCCCEEEEc
Q 017492 288 -GVRR--GTDVFKALALGASGIFIG 309 (370)
Q Consensus 288 -GI~~--~~dv~kalalGAd~V~ig 309 (370)
|... ...+.+.+..||++|.+=
T Consensus 89 ~Gyg~~~~~~~~~l~~aGa~gv~iE 113 (255)
T 2qiw_A 89 SGYGLSPADLIAQILEAGAVGINVE 113 (255)
T ss_dssp TCTTCCHHHHHHHHHHTTCCEEEEC
T ss_pred CCcCcHHHHHHHHHHHcCCcEEEEC
Confidence 4322 456667778999999873
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=18 Score=33.29 Aligned_cols=176 Identities=15% Similarity=0.089 Sum_probs=98.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCCCceEEEEeecCChHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~~~~~~Qly~~~d~~~~~~ 140 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ +| +.+.+.||-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~ 82 (293)
T 1w3i_A 5 TPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIR 82 (293)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHH
Confidence 4455666432223333334666666778876443 32 3456666533 22223 344432 335566778
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
+.+.|+++|++++.+. .|..-++ | + .+-..+..+.|
T Consensus 83 la~~A~~~Gadavlv~--~P~y~~~----------~---s-----------------------------~~~l~~~f~~v 118 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASY--APYYYPR----------M---S-----------------------------EKHLVKYFKTL 118 (293)
T ss_dssp HHHHGGGSCCSEEEEE--CCCSCSS----------C---C-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCCCCCC----------C---C-----------------------------HHHHHHHHHHH
Confidence 8888999999998875 3432000 0 0 00123345667
Q ss_pred HHhcCCcEEEEec-------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 221 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 221 r~~~~~Pv~vK~v-------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.+.+++||++=.+ ++++...+ .-.+-+|.-+. ..+..+.++.+ .+++..| .+|- ..
T Consensus 119 a~a~~lPiilYn~P~~tg~~l~~~~~~~--~pnIvgiKds~----------gd~~~~~~~~~-~~~~f~v-~~G~---d~ 181 (293)
T 1w3i_A 119 CEVSPHPVYLYNYPTATGKDIDAKVAKE--IGCFTGVKDTI----------ENIIHTLDYKR-LNPNMLV-YSGS---DM 181 (293)
T ss_dssp HHHCSSCEEEEECHHHHSCCCCHHHHHH--HCCEEEEEECC----------SCHHHHHHHHH-HCTTSEE-EECC---ST
T ss_pred HhhCCCCEEEEECchhhCcCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEE-EEcc---HH
Confidence 7778999998764 46666655 23344454432 12344455555 4445555 4442 13
Q ss_pred HHHHHHHhCCCEEEEcHH
Q 017492 294 DVFKALALGASGIFIGRP 311 (370)
Q Consensus 294 dv~kalalGAd~V~igr~ 311 (370)
.++.++.+|++++..+.+
T Consensus 182 ~~~~~l~~G~~G~is~~a 199 (293)
T 1w3i_A 182 LIATVASTGLDGNVAAGS 199 (293)
T ss_dssp THHHHHHTTCCEEECGGG
T ss_pred HHHHHHHcCCCEEEeCHH
Confidence 467788999999998874
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.55 Score=42.10 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHcCccEEEEccC---CccCCCCccchHHHHHHHH---HHccCCCcEEEe-----cCCCCH--------HH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVV---KATQGRIPVFLD-----GGVRRG--------TD 294 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~---gg~~~~~~~~~~~~l~~i~---~~~~~~ipvi~~-----GGI~~~--------~d 294 (370)
.+.+++..|.+.|||-|.+... ||. .|++-.+..++ +.+ ++||.+. |++... .|
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~~~~--~ipV~vMIRPR~GdF~Ys~~E~~~M~~D 81 (224)
T 2bdq_A 9 ENLTDLTRLDKAIISRVELCDNLAVGGT-----TPSYGVIKEANQYLHEK--GISVAVMIRPRGGNFVYNDLELRIMEED 81 (224)
T ss_dssp ETTTTGGGCCTTTCCEEEEEBCGGGTCB-----CCCHHHHHHHHHHHHHT--TCEEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCc-----CCCHHHHHHHHHhhhhc--CCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence 5788899999999999998753 443 45566666666 665 7888774 444333 37
Q ss_pred HHHHHHhCCCEEEEcH
Q 017492 295 VFKALALGASGIFIGR 310 (370)
Q Consensus 295 v~kalalGAd~V~igr 310 (370)
+..+..+|||+|.+|-
T Consensus 82 i~~~~~~GadGvV~G~ 97 (224)
T 2bdq_A 82 ILRAVELESDALVLGI 97 (224)
T ss_dssp HHHHHHTTCSEEEECC
T ss_pred HHHHHHcCCCEEEEee
Confidence 7778889999999994
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=87.20 E-value=2.1 Score=39.59 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=61.5
Q ss_pred HHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC----------Cccch---HHHHHHHHHHccC
Q 017492 215 KDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD----------YVPAT---IMALEEVVKATQG 279 (370)
Q Consensus 215 ~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~----------~~~~~---~~~l~~i~~~~~~ 279 (370)
+.++.++++. +.||+--+.-+--.|+.+.+.|+|.|++-|.|..... .+.+. .+.-.++.-.+ .
T Consensus 15 ~il~~l~~~i~~~~~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v-~ 93 (286)
T 2p10_A 15 ELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV-R 93 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC-S
T ss_pred HHHHHHHHHHhcCCceEEEecccchhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccC-C
Confidence 4578888776 7899888888889999999999999999886532111 12111 12222232222 3
Q ss_pred CCcEEEec-C---CCCHHHHHHHHH-hCCCEEEEcHH
Q 017492 280 RIPVFLDG-G---VRRGTDVFKALA-LGASGIFIGRP 311 (370)
Q Consensus 280 ~ipvi~~G-G---I~~~~dv~kala-lGAd~V~igr~ 311 (370)
++||++-= + .++-.++++.|. +|+++| +=-|
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~p 129 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFP 129 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECS
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECC
Confidence 78998731 1 134456667776 899999 5444
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=7.2 Score=37.03 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs 253 (370)
+.++.++++|+.+++||+.-+. .++++|..+++.| +|.|.++
T Consensus 264 ~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iG 307 (343)
T 3kru_A 264 YQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALG 307 (343)
T ss_dssp TTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEES
T ss_pred eeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHH
Confidence 4688899999999999988764 6899999999998 9999873
|
| >3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A | Back alignment and structure |
|---|
Probab=87.15 E-value=3 Score=39.78 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC----------Cc----cchHHHHHHHHHH
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD----------YV----PATIMALEEVVKA 276 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~----------~~----~~~~~~l~~i~~~ 276 (370)
+|+-++.++... ++++-+=.+.+...+..+.++|+..|... -||-.| .+ .+.+..+.++.+.
T Consensus 163 T~eGi~A~~~L~~eGI~vN~TliFS~~Qa~~aAeAGa~~ISPF--VGRidD~~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 240 (345)
T 3tkf_A 163 TWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPF--VGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKL 240 (345)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHHTTCSSCCCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEee--cchHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 566544444332 88998888999999999999999999874 122111 11 2344455555443
Q ss_pred c---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 277 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 277 ~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+ +.+..|++ -.+|+..++.. .+|+|.+-+.-.++..+..
T Consensus 241 yk~~g~~T~Vl~-ASfRn~~~V~a--LaG~d~vTipp~lL~~L~~ 282 (345)
T 3tkf_A 241 YKSHGFKTIVMG-ASFRNVEQVIA--LAGCDALTISPVLLEELKN 282 (345)
T ss_dssp HHHHTCCSEEEE-BCCSSHHHHHT--TTTSSEEEECHHHHHHHHT
T ss_pred HHHcCCCCEEEe-CCCCCHHHHHH--HhCCCEEECCHHHHHHHHh
Confidence 3 33555555 55999999983 4699999999888877654
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=86.90 E-value=3.5 Score=37.98 Aligned_cols=88 Identities=28% Similarity=0.305 Sum_probs=58.1
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c-c--CCCCccchHH----HHHHHHHHccCCCcEEEec-
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R--QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g-~--~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G- 287 (370)
++++.+. + +.+-++-+.-.|+.+.++|+|+|.+|+.+ + . ..|.++-+++ .+..|.+.+ ++||++|.
T Consensus 10 lr~l~~~-~--i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~--~~pviaD~d 84 (275)
T 2ze3_A 10 FHALHQT-G--FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV--AIPVNADIE 84 (275)
T ss_dssp HHHHHHH-C--EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC--SSCEEEECT
T ss_pred HHHHhhC-C--eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc--CCCEEeecC
Confidence 4444443 3 77777788999999999999999998531 1 1 1344444554 344455554 68999998
Q ss_pred -CCC-CHHHH----HHHHHhCCCEEEEc
Q 017492 288 -GVR-RGTDV----FKALALGASGIFIG 309 (370)
Q Consensus 288 -GI~-~~~dv----~kalalGAd~V~ig 309 (370)
|.. ++.++ .+.+..||.+|.+=
T Consensus 85 ~Gyg~~~~~~~~~v~~l~~aGaagv~iE 112 (275)
T 2ze3_A 85 AGYGHAPEDVRRTVEHFAALGVAGVNLE 112 (275)
T ss_dssp TCSSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 544 45444 34566899999873
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=86.89 E-value=2.4 Score=39.11 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+ -|...|+..+ .++++ +-.+|||++++-.|++
T Consensus 25 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~~t-~~ai~la~~A~~~Gadavlv~~P~y 101 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR--VIVQVASLNA-DEAIALAKYAESRGAEAVASLPPYY 101 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCSSH-HHHHHHHHHHHHTTCSEEEECCSCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCCCH-HHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 455778999999997654421111111 22345555555543 3444555444 44433 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~ 332 (370)
+. .-.++++.++++.+.
T Consensus 102 ~~--~~s~~~l~~~f~~va 118 (286)
T 2r91_A 102 FP--RLSERQIAKYFRDLC 118 (286)
T ss_dssp ST--TCCHHHHHHHHHHHH
T ss_pred CC--CCCHHHHHHHHHHHH
Confidence 64 014566555555443
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=86.65 E-value=3.6 Score=38.38 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=47.5
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe---cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~---GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
-++...++|+|.|.+ + ++.+.+.+.++.+.+ ++|+++. +|-.-.-++.+.-++|.+.|.+|...+.
T Consensus 176 Ra~ay~~AGAD~if~--~-------~~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~r 244 (298)
T 3eoo_A 176 RAIAYVEAGADMIFP--E-------AMKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYR 244 (298)
T ss_dssp HHHHHHHTTCSEEEE--C-------CCCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHH
T ss_pred HHHhhHhcCCCEEEe--C-------CCCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHH
Confidence 367788999999988 3 245678888888888 5888663 4322112344455689999999988776
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 245 a 245 (298)
T 3eoo_A 245 A 245 (298)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=86.52 E-value=3.7 Score=38.72 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=61.0
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-c-c---CCCCccchHHH----HHHHHHHccCCCcEEEec
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIMA----LEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g-~---~~~~~~~~~~~----l~~i~~~~~~~ipvi~~G 287 (370)
++++.+. +-|+.+-++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++. +..|.+.. .++||++|.
T Consensus 31 lr~l~~~-~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~-~~~PviaD~ 108 (318)
T 1zlp_A 31 MHRLIEE-HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAA-PNLCVVVDG 108 (318)
T ss_dssp HHHHHHH-SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHS-SSSEEEEEC
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhc-cCCCEEEeC
Confidence 4444432 56888888899999999999999999998642 1 1 13445555543 33444443 279999998
Q ss_pred --CCCCHHHHH----HHHHhCCCEEEE
Q 017492 288 --GVRRGTDVF----KALALGASGIFI 308 (370)
Q Consensus 288 --GI~~~~dv~----kalalGAd~V~i 308 (370)
|..++.++. +.+..||.+|.|
T Consensus 109 d~Gyg~~~~v~~tv~~l~~aGaagv~i 135 (318)
T 1zlp_A 109 DTGGGGPLNVQRFIRELISAGAKGVFL 135 (318)
T ss_dssp TTCSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 555665554 355689999987
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=86.44 E-value=16 Score=35.21 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.= ...+..++.+.++++.. .+||.
T Consensus 185 ~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 254 (388)
T 3tcs_A 185 TEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFEE--------PCPYWELAQTKQVTDAL--DIDVT 254 (388)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeEEEC--------CCCccCHHHHHHHHHhc--CCCEE
Confidence 456789999987 578888753 456654 5566778877631 01122567788888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++.-+.+..|+.+++..| +|.|++--.
T Consensus 255 ~dE~~~~~~~~~~~i~~~a~d~v~~d~~ 282 (388)
T 3tcs_A 255 GGEQDCDLPTWQRMIDMRAVDIVQPDIL 282 (388)
T ss_dssp ECTTCCCHHHHHHHHHHTCCSEECCCHH
T ss_pred cCCccCCHHHHHHHHHcCCCCEEEeCcc
Confidence 999999999999999987 788887643
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=2.2 Score=39.46 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++++ ..++.||++|..+ ++++ +..+...|.+-+.+.-.|++. .... ..+..++.+++.. ..+||+
T Consensus 118 n~~ll~~~-a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~~~~~dl~~i~~lk~~~-~~~pV~ 194 (280)
T 2qkf_A 118 QTDLVVAM-AKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF-GYDNLVVDMLGFGVMKQTC-GNLPVI 194 (280)
T ss_dssp BHHHHHHH-HHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TTCCEE
T ss_pred CHHHHHHH-HcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHhC-CCCCEE
Q ss_pred Ee-----------cCCCCH------HHHHHHHHhCCCEEEE
Q 017492 285 LD-----------GGVRRG------TDVFKALALGASGIFI 308 (370)
Q Consensus 285 ~~-----------GGI~~~------~dv~kalalGAd~V~i 308 (370)
.| ||-..+ .-...++++||++++|
T Consensus 195 ~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~I 235 (280)
T 2qkf_A 195 FDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFL 235 (280)
T ss_dssp EEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEE
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=86.14 E-value=3.6 Score=37.96 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=47.2
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G--GI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.++...++|||.|.+ .+.++.+.+.++.+.+ ++|+-... +..+ +.+.-++|.+.|.+|...+.+
T Consensus 173 Ra~ay~eAGAd~i~~---------e~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ra 238 (275)
T 2ze3_A 173 RGQAYADAGADGIFV---------PLALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLMLA 238 (275)
T ss_dssp HHHHHHHTTCSEEEC---------TTCCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHHHH
T ss_pred HHHHHHHCCCCEEEE---------CCCCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHHHH
Confidence 367788999999988 2346678888888888 67876553 3444 344456899999999887764
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=86.03 E-value=1.6 Score=43.81 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.++.+.++|++.+.+....|. ....++.+..+++..++++||+ .|++.+.+++.+++.+|||++.+|.
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~g~----~~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSDGF----SEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCC----SHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHhhhccceEEecccCc----ccchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEecc
Confidence 35577888999999988432221 1224455666666542127777 4889999999999999999998764
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=85.72 E-value=3.9 Score=39.78 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+-. ..+.++|. .+.+.|++.|.-- + ..+..++.+.++++.. .+||+
T Consensus 199 d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP------~-~~~~~~~~~~~l~~~~--~iPIa 269 (410)
T 3dip_A 199 GLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDP------I-AKMDNIPAVADLRRQT--RAPIC 269 (410)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECC------B-SCTTCHHHHHHHHHHH--CCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C-CCcccHHHHHHHHhhC--CCCEE
Confidence 567899999998 47888764 25666654 4456788877521 0 1122567788888876 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..++.+++..| +|.|++-
T Consensus 270 ~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 270 GGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 999999999999999998 7999984
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=85.46 E-value=3.3 Score=37.80 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=50.9
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++.+.....++||++|.|-.-.- +=..+.+.|..+++.+ ++||+.-==|-++.++.++-++|||+|.+=-
T Consensus 65 dp~~iA~~~~~GA~aiSVLTd~~----~F~Gs~~~L~~vr~~v--~lPvLrKDFiid~yQI~eAr~~GADaILLI~ 134 (258)
T 4a29_A 65 DPIEYAKFMERYAVGLSITTEEK----YFNGSYETLRKIASSV--SIPILMSDFIVKESQIDDAYNLGADTVLLIV 134 (258)
T ss_dssp CHHHHHHHHTTTCSEEEEECCST----TTCCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred CHHHHHHHHhCCCeEEEEeCCCC----CCCCCHHHHHHHHHhc--CCCEeeccccccHHHHHHHHHcCCCeeehHH
Confidence 45444456689999999854210 1112456778787776 8999987778999999999999999997643
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=85.35 E-value=1.2 Score=40.48 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++++.+++||++-+. .+++++..+.++|+|+++|..
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGS 231 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 231 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence 456789999988999999775 459999999999999999854
|
| >3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.33 E-value=6 Score=37.61 Aligned_cols=100 Identities=10% Similarity=0.149 Sum_probs=68.9
Q ss_pred cHHHHHHHHHh-c--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC------------ccchHHHHHHHHHH-
Q 017492 213 SWKDVKWLQTI-T--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY------------VPATIMALEEVVKA- 276 (370)
Q Consensus 213 ~~~~i~~ir~~-~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~------------~~~~~~~l~~i~~~- 276 (370)
+|+=++.++.. . ++++-+=.+.+...+..+.++|+..|..+ -||-.|+ +-+.+..+.++.+.
T Consensus 148 T~eGi~A~~~L~~~eGI~vNvTLiFS~~Qa~aaa~AGa~~iSpF--VgRidd~~~~~~~~~~~~~~d~Gv~~v~~iy~~y 225 (339)
T 3cq0_A 148 TWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPF--VGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYY 225 (339)
T ss_dssp SHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHC---CCCTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeEeeeCCHHHHHHHHHcCCcEEEec--ccHHHHHhhhhcccccccccChHHHHHHHHHHHH
Confidence 67655555544 3 89998888999999999999999988774 2331111 22344444444443
Q ss_pred --ccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 277 --TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 277 --~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
.+.+..|++ -.+|+..+|.. ..|+|.+-+.-.++..+.
T Consensus 226 ~~~~~~T~v~~-AS~r~~~~V~~--LaG~d~vTipp~~l~~l~ 265 (339)
T 3cq0_A 226 KRHGYATEVMA-ASFRNLDELKA--LAGIDNMTLPLNLLEQLY 265 (339)
T ss_dssp HHHTCCCEEEE-BCCCSHHHHHH--HTTSSEEEEEHHHHHHHH
T ss_pred HHcCCCcEEEe-cCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 333455555 55999999986 579999999988887765
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=5.9 Score=39.76 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=32.4
Q ss_pred cHHHHHHHHHhc-------CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTIT-------KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~-------~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
.|+.+.++++.+ ++||+.=| +.+.+|+.+++.+|||+|.++
T Consensus 384 ~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 384 PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 355566666655 68988854 789999999999999999884
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=85.20 E-value=1.9 Score=39.59 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=56.3
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++++ ..++.||++|..+ ++++ +..+...|-.-+.+.-.|++. .... ..+..++.+++. . ||+
T Consensus 107 n~~ll~~~-a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~~-~y~~~~~dl~~i~~lk~~---~-pVi 180 (267)
T 2nwr_A 107 QTDLLLAA-AKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTF-GYNNLVVDFRSLPIMKQW---A-KVI 180 (267)
T ss_dssp CHHHHHHH-HTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEEC-SSSCEECCTTHHHHHTTT---S-EEE
T ss_pred CHHHHHHH-HcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHc---C-CEE
Confidence 45577777 4679999999763 5555 344556787666665445431 1111 233455555442 3 999
Q ss_pred Ee---------------cCCCCH-HH-HHHHHHhCCCEEEEcHHH
Q 017492 285 LD---------------GGVRRG-TD-VFKALALGASGIFIGRPV 312 (370)
Q Consensus 285 ~~---------------GGI~~~-~d-v~kalalGAd~V~igr~~ 312 (370)
+| +|-+.. .+ +..++++||+++||=+-+
T Consensus 181 vD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~ 225 (267)
T 2nwr_A 181 YDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHP 225 (267)
T ss_dssp EETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred EcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence 97 442221 23 335678999999997744
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=5.1 Score=35.61 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=48.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCc-cchHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHH----HhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKAL----ALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~kal----alGAd~V~igr 310 (370)
.+++.|++.|||.|.+.-.-|.-.++. ....+.+..+++..+. -+|||..-+..+.+.+.++- .+|||+|=..+
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsT 154 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTST 154 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 567889999999999743211100010 1123456666666543 47888888888888777654 37999998875
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.99 E-value=7.6 Score=34.69 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=52.7
Q ss_pred cEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-hCC
Q 017492 227 PILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGA 303 (370)
Q Consensus 227 Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala-lGA 303 (370)
+..||.+ .++++++ +.++|+|+|=+.-...+. ..-+.+...+|.+.. ..|+...|=..+.+++.+.+. .|.
T Consensus 20 ~M~VKICGit~~ed~~-a~~~gaD~iGfIf~~~Sp---R~V~~~~A~~i~~~~--~~~~~~v~v~v~~~ei~~~i~~~~l 93 (228)
T 4aaj_A 20 HMFVKICGIKSLEELE-IVEKHADATGVVVNSNSK---RRIPLEKAREIIENS--AIPVFLVSTMVGFSEWAMAIERTGA 93 (228)
T ss_dssp CCEEEECCCCSHHHHH-HHHTTCSEEEEECSSSST---TBCCHHHHHHHHHHC--SSCEEEEECCCCHHHHHHHHHHHTC
T ss_pred ceEEEECCCCcHHHHH-HHHcCCCEEEEEecCCCC---CCCCHHHHHHHHHhh--CCCCEEEeccCchHHHHHHHHhccc
Confidence 4678976 6789886 678999998653222211 011345556666655 577888887778888887776 789
Q ss_pred CEEEEc
Q 017492 304 SGIFIG 309 (370)
Q Consensus 304 d~V~ig 309 (370)
|.|++=
T Consensus 94 d~vQLH 99 (228)
T 4aaj_A 94 QYIQVH 99 (228)
T ss_dssp SEEEEC
T ss_pred hheecc
Confidence 999984
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=84.95 E-value=3.3 Score=38.84 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=45.0
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~---~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++...++|+|.|.+ + ++.+.+.+.++.+.+. .+|+++ .||-...-.+.+.-.+|.+.|..+..++.+
T Consensus 184 a~ay~eAGAD~ifi--~-------~~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~ra 253 (307)
T 3lye_A 184 LRAARDEGADVGLL--E-------GFRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAP 253 (307)
T ss_dssp HHHHHHTTCSEEEE--C-------CCSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHH
T ss_pred HHHHHHCCCCEEEe--c-------CCCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHHH
Confidence 56678999999988 2 2456678888888773 377754 344221122344456899999998876654
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=84.80 E-value=3.6 Score=37.27 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHhc-----CCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~-----~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..++.|+++|+.. +.+|.|=|..+++.+..+.++|||.++++
T Consensus 177 ~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 177 AMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp THHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 3567777777753 47888888888899999999999999884
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=84.77 E-value=14 Score=35.34 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=64.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|+..|. + ...+..++.+.++++.. .+||+
T Consensus 180 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~ipIa 249 (382)
T 3dgb_A 180 DLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDLIE-------Q-PISRNNRAGMVRLNASS--PAPIM 249 (382)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCCEE-------C-CBCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCeee-------C-CCCccCHHHHHHHHHhC--CCCEE
Confidence 456788888887 46777764 2456654 445566776663 1 11223577788888876 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++.-+.+..|+.+++..| +|.|++--.
T Consensus 250 ~dE~~~~~~~~~~~~~~~~~d~v~~k~~ 277 (382)
T 3dgb_A 250 ADESIECVEDAFNLAREGAASVFALKIA 277 (382)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECHH
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence 999999999999999987 799998643
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=4.5 Score=39.00 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEEc
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVS 253 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~vs 253 (370)
+ ++++|+.+++||+.-+..+++++..+++.| +|.|.++
T Consensus 298 ~-~~~ir~~~~iPvi~~G~it~~~a~~~l~~g~aD~V~ig 336 (379)
T 3aty_A 298 V-VAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFG 336 (379)
T ss_dssp H-HHHHHTTCCSCEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred H-HHHHHHHCCCcEEEECCCCHHHHHHHHHcCCCeEEEec
Confidence 6 889999999999987766999999999998 9999873
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=84.64 E-value=15 Score=35.39 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEe--cCCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~--v~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+.+.++.+|+.+ +.++.+-- ..+.++|. .+.+.|++.|.= - .+.++.+.++++.. .+||.+
T Consensus 199 d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEq---------P-~~d~~~~~~l~~~~--~iPIa~ 266 (398)
T 4dye_A 199 DVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLED---------P-CVGIEGMAQVKAKV--RIPLCT 266 (398)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC---------C-SSHHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEcC---------C-CCCHHHHHHHHhhC--CCCEEe
Confidence 456788888887 56676653 24566654 344567776631 0 11667788887776 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
+.-+.+..|+.+++..| +|.|++--.
T Consensus 267 dE~~~~~~~~~~~i~~~a~d~v~~k~~ 293 (398)
T 4dye_A 267 NMCVVRFEDFAPAMRLNAVDVIHGDVY 293 (398)
T ss_dssp SSSCCSGGGHHHHHHTTCCSEEEECHH
T ss_pred CCcCCCHHHHHHHHHhCCCCEEEeCcc
Confidence 99999999999999988 899988754
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=84.31 E-value=3.2 Score=38.58 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 315 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 315 (370)
+.++...++|||.|.+ +++ .++.+.+.++.+.+...+|+++.-.-...-++.+.-++| .+.|.+|...+.+
T Consensus 170 ~Ra~ay~eAGAd~i~~--e~~------~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ra 241 (290)
T 2hjp_A 170 RRGQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_dssp HHHHHHHHTTCSEEEE--CCC------CSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred HHHHHHHHcCCcEEEe--CCC------CCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHH
Confidence 4477889999999998 321 455567788888884459999752100112344445689 9999999987765
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=84.23 E-value=16 Score=34.98 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=83.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++++.+.|++++=+.++++... .++.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~--------------------------------------------~~~~ 178 (386)
T 3fv9_G 143 GDTPEAMRAKVARHRAQGFKGHSIKIGASEAE--------------------------------------------GGPA 178 (386)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCCTTT--------------------------------------------THHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--------------------------------------------CCHH
Confidence 35677777777888889999988776543100 0111
Q ss_pred ccHHHHHHHHHhc--CCcEEEEe--cCCHHHHHHHHH-c--CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDARIAVQ-A--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~~a~~-a--G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.+.+.++.+|+.+ +.++.+.- ..+.++|.+..+ . +.+. .+= + -.+.++.+.++++.. .+||.
T Consensus 179 ~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i-~iE-----e---P~~~~~~~~~l~~~~--~iPIa 247 (386)
T 3fv9_G 179 LDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDI-VLE-----A---PCASWAETKSLRARC--ALPLL 247 (386)
T ss_dssp HHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCC-EEE-----C---CCSSHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCc-EEe-----c---CCCCHHHHHHHHhhC--CCCEE
Confidence 2456788899887 56777764 356777655432 2 2221 221 1 112566677776654 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++.-+.+..|+.+++..| +|.|++--.
T Consensus 248 ~dE~~~~~~~~~~~~~~~a~d~v~~k~~ 275 (386)
T 3fv9_G 248 LDELIQTETDLIAAIRDDLCDGVGLKVS 275 (386)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEEEHH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEECcc
Confidence 999999999999999987 899998643
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=83.85 E-value=20 Score=32.76 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+.+...+.+++..+.|++.|+|+..++
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~ 58 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPT 58 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcC
Confidence 455556666777789999999987653
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=2.6 Score=39.12 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal----alGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|.+.++-|-...-... -.+.+..+++.+.+ -|...|+..+ .++++.. .+|||++++-.|+++
T Consensus 27 ~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~~t-~~ai~la~~A~~~Gadavlv~~P~y~ 103 (293)
T 1w3i_A 27 ENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNL-DDAIRLAKLSKDFDIVGIASYAPYYY 103 (293)
T ss_dssp HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCH-HHHHHHHHHGGGSCCSEEEEECCCSC
T ss_pred HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC--EEEecCCCCH-HHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 45678999999997654321111111 11234444444433 2444555444 4444322 279999999999876
Q ss_pred HHHhcCHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~ 332 (370)
. .-.++++.++++.+.
T Consensus 104 ~--~~s~~~l~~~f~~va 119 (293)
T 1w3i_A 104 P--RMSEKHLVKYFKTLC 119 (293)
T ss_dssp S--SCCHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHH
Confidence 3 014565555554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 370 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 1e-123 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 1e-105 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 1e-103 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 1e-103 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 2e-61 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 6e-57 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 3e-16 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 3e-15 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 7e-09 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 2e-08 | |
| d1juba_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 8e-06 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 1e-04 | |
| d1tv5a1 | 409 | c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase { | 2e-04 | |
| d1d3ga_ | 367 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human ( | 0.002 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 0.004 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 357 bits (917), Expect = e-123
Identities = 322/358 (89%), Positives = 344/358 (96%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 311 bits (798), Expect = e-105
Identities = 147/355 (41%), Positives = 222/355 (62%), Gaps = 3/355 (0%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A G
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQ R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 122 DLWFQ-LYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 180
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243
F+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA +
Sbjct: 181 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240
Query: 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGA 298
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 299 EAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 306 bits (784), Expect = e-103
Identities = 155/353 (43%), Positives = 217/353 (61%), Gaps = 8/353 (2%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T+ G +IS PI I+PTA +A P+GE A A + S S S + VA+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
+ + L + + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 DLRALK-------EEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 303 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 307 bits (787), Expect = e-103
Identities = 140/379 (36%), Positives = 216/379 (56%), Gaps = 17/379 (4%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE------YATARAASAAGTIMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P I TL+S S +
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
K + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 202 NTKAGPKAMK------KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 289
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 349
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375
Query: 350 ITRDHIVTEWDASLPRPVP 368
+ D + + VP
Sbjct: 376 LKPDLLDLSTLKARTVGVP 394
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 198 bits (503), Expect = 2e-61
Identities = 60/349 (17%), Positives = 118/349 (33%), Gaps = 67/349 (19%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMTLSSWSTSSVEEVASTGPGI------RFFQLYVYKDRNVVAQLVRRAERAGFK 151
S AG + + S ++ + I AQ E G
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211
A+ + ++ + ++
Sbjct: 123 ALQIHLNVIQEIVMPEGDRSFSG------------------------------------- 145
Query: 212 LSWKDVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-- 266
+ K ++ + + +P++VK V A +AGAA + + +G +
Sbjct: 146 -ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRR 204
Query: 267 --------------IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312
+L E+ + GG++ DV KA+ALGAS +
Sbjct: 205 QRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHF 263
Query: 313 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 361
+ +L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 264 LKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGET 312
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 186 bits (472), Expect = 6e-57
Identities = 64/335 (19%), Positives = 99/335 (29%), Gaps = 54/335 (16%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155
AA A G M L S A F++ + ++ A L
Sbjct: 61 AAEALGVGMMLGSGRILLERPEALRS-----FRVRKVAPKALL--------IANLGLAQL 107
Query: 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215
R ++ L + V
Sbjct: 108 RRYGRDDLLRLVEMLEADALAFHVNPLQE------------------AVQRGDTDFRGLV 149
Query: 216 DVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 272
+ P++VK V E A A + V+ G V + E
Sbjct: 150 ERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEV 209
Query: 273 V-----------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315
V+ +P+ GGV GTD KALALGA + + RP++
Sbjct: 210 RHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR- 268
Query: 316 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 350
A EG + V + EE A+ G R+ KE
Sbjct: 269 PALEGAERVAAWIGDYLEELRTALFAIGARNPKEA 303
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 74.5 bits (182), Expect = 3e-16
Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 8/188 (4%)
Query: 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQGL 187
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247
++ + Q + + V +++T ++ + T E+A+ A + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 248 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 305
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 306 IFIGRPVV 313
+G +
Sbjct: 201 SVVGGAIT 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 72.2 bits (176), Expect = 3e-15
Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 18/189 (9%)
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD----- 188
++ + + A+ AG I +I+ LP +K
Sbjct: 31 TGGIMPLMAKAAQEAGAVGIRANSVRD-----IKEIQAITDLPIIGIIKKDYPPQEPFIT 85
Query: 189 ------LGKMDEANDSGLAAYVAGQIDRSLS-WKDVKWLQTITKLPILVKGVLTAEDARI 241
L ++ ++ +L+ + T ++ +
Sbjct: 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV 145
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A QAG + + G A + + + I V +G + + K L
Sbjct: 146 AHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKINDL 204
Query: 302 GASGIFIGR 310
G +GI +G
Sbjct: 205 GVAGIVVGG 213
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 54.9 bits (132), Expect = 7e-09
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 47/195 (24%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVSNHGARQLDYVPATIM---- 268
+ L+ I + VK V + IA +A A I++S + P T +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 269 -----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 310
L EV + + R+ + DGG++ G D+ A LGA IG
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGC 680
Query: 311 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 351
+ + V + L EE +A G RSL E+
Sbjct: 681 IMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740
Query: 352 -RDHIVTEWDASLPR 365
R ++ +
Sbjct: 741 GRTDLLHQVSRGAEH 755
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 53.8 bits (129), Expect = 2e-08
Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 47/187 (25%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVS-----NHGARQ--LDYV-- 263
+ L I + + VK V IA +A A I +S + + +
Sbjct: 589 IYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648
Query: 264 PATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 310
P + + EV + + R+ + DGG++ G DV A +GA G
Sbjct: 649 P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGC 707
Query: 311 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 351
+ V + EE +A G RSL +I
Sbjct: 708 IMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDII 767
Query: 352 -RDHIVT 357
R ++
Sbjct: 768 GRTDLLK 774
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 59/322 (18%), Positives = 91/322 (28%), Gaps = 51/322 (15%)
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
+NTT K + P M A E AS AG +T S
Sbjct: 2 LNTTFANAKFANPFMNASGVHCM----TIEDLEELKASQAGAYIT------KSSTLEKRE 51
Query: 121 G-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
G P R+ L N + + + + + G I
Sbjct: 52 GNPLPRYVDLE-LGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA 110
Query: 180 TLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237
LK Q D + E N + D + K +K + T P+ VK +
Sbjct: 111 MLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFD 170
Query: 238 D------ARIAVQAGAAGIIVSNH-----------------------GARQLDYVPATIM 268
A I Q + N G P +
Sbjct: 171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230
Query: 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 328
+ + I + GG+ G D F+ L GA+ + IG + EG R++
Sbjct: 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGPAIFDRII 286
Query: 329 EMLREEFELAMALSGCRSLKEI 350
+ L E M G +S+ +
Sbjct: 287 KELEE----IMNQKGYQSIADF 304
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 323
P + A+ + +A G P+ GG+ + L GAS + + V +
Sbjct: 240 PIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV 294
Query: 324 VRRVLEMLREEFE 336
++ L+
Sbjct: 295 IQDYCTGLKALLY 307
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 30/172 (17%)
Query: 205 AGQIDRSLSWKDVKWLQTITKLPILVK------GVLTAEDARIAVQAGAAGIIVSN-HGA 257
+ + + + T K + VK E A + ++ G+I+SN
Sbjct: 246 NSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 305
Query: 258 RQLDYVPATIM--------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
+ E+ T +IP+ GG+ G D + + GA
Sbjct: 306 INDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGA 365
Query: 304 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDH 354
S + +V+ G K ++ L + G +LKE R H
Sbjct: 366 SVCQLYSCLVF----NGMKSAVQIKRELNHL----LYQRGYYNLKEAIGRKH 409
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 331
E+ TQGR+P+ GGV G D + + GAS + + + + G V +V L
Sbjct: 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPPVVGKVKREL 345
Query: 332 REEFELAMALSGCRSLKEIT-RDH 354
+ G + + DH
Sbjct: 346 EAL----LKEQGFGGVTDAIGADH 365
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 36.1 bits (82), Expect = 0.004
Identities = 53/316 (16%), Positives = 91/316 (28%), Gaps = 46/316 (14%)
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++ + G + PI+ A + EYA + G+IM +
Sbjct: 7 LSVKLPGLDLKNPIIPA-SGCFGFG---EEYAKYYDLNKLGSIMV------KATTLHPRF 56
Query: 121 G-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
G P R + N + E + + + A++
Sbjct: 57 GNPTPRVAETASG-MLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVA 115
Query: 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQI---DRSLSWKDVKWLQTITKLPILVKGVLTA 236
K E N S GQ D ++ VK + ++K+P+ VK
Sbjct: 116 VCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV 175
Query: 237 EDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------------ 280
D + AGA G+ + N + L + G
Sbjct: 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQ 235
Query: 281 ------IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 334
IP+ GGV DV + GAS + +G ++++ L E
Sbjct: 236 VAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGT-----ANFADPFVCPKIIDKLPEL 290
Query: 335 FELAMALSGCRSLKEI 350
M SL+ +
Sbjct: 291 ----MDQYRIESLESL 302
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.94 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.92 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.92 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.91 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.91 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.89 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.88 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.85 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.84 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.82 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.79 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.78 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.76 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.74 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.73 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.58 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.49 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.44 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.32 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.11 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.1 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.86 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.77 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.76 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.63 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 98.63 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 98.58 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.53 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.51 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.51 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.5 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.48 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.42 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.38 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.29 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.26 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.24 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.23 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.22 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.21 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.2 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.16 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.14 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.11 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 98.06 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.06 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 97.99 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.95 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.91 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.9 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.88 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.76 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.75 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.72 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.7 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.7 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.67 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.44 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.42 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 97.38 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.37 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.3 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.21 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 97.16 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.06 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.99 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.92 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 96.9 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.84 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.8 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 96.7 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.67 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.59 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.48 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.35 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.31 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 96.27 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.21 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.21 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 96.15 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 96.04 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.01 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 96.0 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 95.86 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 95.84 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.81 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.74 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 95.48 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 95.18 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.03 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 94.93 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 94.89 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 94.84 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.78 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 94.73 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.65 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 94.61 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.59 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.56 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 94.01 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 93.82 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 93.4 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 93.03 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 92.88 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 92.87 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 92.79 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 92.7 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 92.42 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 92.23 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 92.21 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 91.88 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 91.39 | |
| d1onra_ | 316 | Transaldolase {Escherichia coli [TaxId: 562]} | 91.34 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.26 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 91.25 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 91.13 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 90.88 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 90.81 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 90.74 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 90.67 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 90.65 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 90.08 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 89.9 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 89.76 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 89.37 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.99 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 88.9 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 88.03 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 88.02 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 87.3 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 87.02 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 86.8 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 86.75 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 86.71 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 86.45 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 86.44 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 86.29 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 86.15 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 86.05 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 85.77 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 85.61 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 85.39 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 85.25 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 84.99 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 84.77 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 84.76 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 84.7 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 84.12 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 83.91 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 83.72 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 83.34 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.1 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 82.89 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 82.76 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 82.68 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 82.65 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 82.52 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 82.3 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 82.02 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 81.19 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 80.69 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 80.65 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 80.1 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.4e-75 Score=567.97 Aligned_cols=346 Identities=46% Similarity=0.755 Sum_probs=314.7
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|++++++||+|+|||+++++||+||||++++
T Consensus 2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~ 81 (349)
T d1tb3a1 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (349)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
..|+++|..+|++|+++|+++++|++++.+.|++.+..+ ++.|||+|.+.+++...+++++++++|+.++++|+|.|+.
T Consensus 82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~ 161 (349)
T d1tb3a1 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (349)
T ss_dssp GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence 999999999999999999999999999999999987766 6899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
++|++|++++|.+|......++..+...... ........++.++|+.++|+++.+++|+++|++.+.+++..+
T Consensus 162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a 234 (349)
T d1tb3a1 162 GNRRRDKRNQLNLEANILLKDLRALKEEKPT-------QSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (349)
T ss_dssp CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHH
T ss_pred cchhhhhhccccCCcccchhhhhhhhhcccc-------ccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHH
Confidence 9999999999988765544433222111100 001112235678999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|.||||||+++++++++.+.|+++++.+++++|||+|||||+|.||+|||+||||+|++||||+|+++++|++
T Consensus 235 ~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~ 314 (349)
T d1tb3a1 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (349)
T ss_dssp HHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
||.++++.|++||+.+|.++|+++++||+++.|.
T Consensus 315 gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~i~ 348 (349)
T d1tb3a1 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence 9999999999999999999999999999998774
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=2.6e-72 Score=549.56 Aligned_cols=357 Identities=90% Similarity=1.352 Sum_probs=327.5
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||++||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+|++++||||+|||+++++||+||||+++
T Consensus 2 ~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg 81 (359)
T d1goxa_ 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 81 (359)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeecccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+..|+++|+.++++|.++|+++++|++++.+.+++.+..+++.|+|+|...+......++++++.+|++++++|+|.|+.
T Consensus 82 ~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~ 161 (359)
T d1goxa_ 82 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 161 (359)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhh
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
+.|++++++++..|......++..............+....+....++.++|++++++++.++.|+++|++.+.+++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a 241 (359)
T d1goxa_ 162 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241 (359)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred hhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHH
Confidence 99999999999887766555443222221111122233344555668889999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|++++.++||||+++++++++.+.|+++++.+.+++|||+|||||+|.||+|||+||||+|++|||+|++++..|++
T Consensus 242 ~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~ 321 (359)
T d1goxa_ 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 321 (359)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
||+++++.|++||+.+|.++|++|++||++..|+..+
T Consensus 322 gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~ 358 (359)
T d1goxa_ 322 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADW 358 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhccCCC
Confidence 9999999999999999999999999999999987654
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-68 Score=530.60 Aligned_cols=356 Identities=38% Similarity=0.659 Sum_probs=309.8
Q ss_pred CCCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccc
Q 017492 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTA 80 (370)
Q Consensus 1 ~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~ 80 (370)
+++++|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|+|++++||||+|||+++++||+||||+
T Consensus 22 ~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g 101 (414)
T d1kbia1 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATA 101 (414)
T ss_dssp GGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCS
T ss_pred hhhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCh---hhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC---CceEEEEeecCChHHHHHHHHHHHHcCCcEEE
Q 017492 81 MQKMAHPE---GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (370)
Q Consensus 81 ~~~~~~~~---~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~---~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~ 154 (370)
++++.|+. .+++.++++...|+++++|+.++.+++++.+..+ .+.|+|+|.+.+++....++++++++|+++++
T Consensus 102 ~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~ 181 (414)
T d1kbia1 102 LCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALF 181 (414)
T ss_dssp CGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEE
T ss_pred hhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCcccc
Confidence 99999983 3345555555689999999999999999987665 45899999999999999999999999999999
Q ss_pred EecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC
Q 017492 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234 (370)
Q Consensus 155 itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~ 234 (370)
+|+|.|+.++|++|+++.+..+....... ..... ....+....+....++.++|++++|++..++.|+++|++.
T Consensus 182 ~tvD~~~~g~re~d~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~ 255 (414)
T d1kbia1 182 VTVDAPSLGQREKDMKLKFSNTKAGPKAM----KKTNV--EESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255 (414)
T ss_dssp EECSCSSCCCCHHHHHHHHTTCC-----------CCCC--SSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEEC
T ss_pred cccccccccccHHHHHhcccccccchhhh----hcccc--cccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccc
Confidence 99999999999999998875332111000 00000 0011112223334566789999999999999999999999
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+++..+.++|+++++++||||+++++.+++...++++.+.+ .+++|||+|||||+|.||+|||+||||+|++|
T Consensus 256 ~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgig 335 (414)
T d1kbia1 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 335 (414)
T ss_dssp SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999999999999999999998887653 46799999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCC
Q 017492 310 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362 (370)
Q Consensus 310 r~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~ 362 (370)
||||+++++.|++||.++++.|++||+.+|.++|++|++||+++.|..+....
T Consensus 336 rp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~ 388 (414)
T d1kbia1 336 RPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKA 388 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHcccccccc
Confidence 99999999999999999999999999999999999999999999988665443
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.9e-67 Score=511.90 Aligned_cols=352 Identities=42% Similarity=0.746 Sum_probs=317.4
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|+.|||+.||++||+..|+|+.||++||.|+++|+++||+|+|+||+|+|++++||+|+|||+++++||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+..++++|..+|++|+++|+++++|++++.+.+++.+..+...|+|.+ ..+......++++++..|++++++|+|.|..
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~ 159 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDVAVN 159 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeec-cccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence 999999999999999999999999999999999998887767777755 5678888999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
+.|+.|.++++..|...........................+..+.++.++|+.++++++.++.|+++|++.+.+++..+
T Consensus 160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a 239 (353)
T d1p4ca_ 160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 239 (353)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence 99999999998877654443322211111111111223345555667788999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.+.|+|++.++||||+++++.+++...++++.... ++|||+|||||+|.||+|||+||||+|++||||+++++..|.+
T Consensus 240 ~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~e 317 (353)
T d1p4ca_ 240 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 317 (353)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HhcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 99999999999999999999999999999998776 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
||+++++.|++||+.+|.++|+++++||+++.|+.
T Consensus 318 gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 352 (353)
T d1p4ca_ 318 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence 99999999999999999999999999999998875
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.8e-47 Score=367.09 Aligned_cols=280 Identities=21% Similarity=0.266 Sum_probs=227.7
Q ss_pred hhcccceeeeccc--CCCCCCccceeEcCeeecCceeecccc-cccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017492 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (370)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~s~~l~g~~l~~Pi~iapm~-~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei 117 (370)
.+||+|+|+|++| .|++++||+|+|||++++.||++|||+ +....+++++.++|++|++.|+++++|++++.+.++.
T Consensus 3 tgfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~ 82 (329)
T d1p0ka_ 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPS 82 (329)
T ss_dssp CSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHH
T ss_pred CCcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHH
Confidence 3699999999999 578999999999999999999999995 4455678899999999999999999999987776654
Q ss_pred hccC------CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCc
Q 017492 118 ASTG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (370)
Q Consensus 118 ~~~~------~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (370)
.... ..+.++|++............+.+++.|++++.+++++|....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~----------------------- 139 (329)
T d1p0ka_ 83 ERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEG----------------------- 139 (329)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC----------------------------
T ss_pred HHhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccc-----------------------
Confidence 3211 13456666655455555556667788999999999998753211100
Q ss_pred cccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccCCC-------
Q 017492 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLD------- 261 (370)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~~~------- 261 (370)
..+....|+.++++++.++.|+++|++ .++++++.+.++|+|+|+|+||||++++
T Consensus 140 ---------------~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~ 204 (329)
T d1p0ka_ 140 ---------------DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRR 204 (329)
T ss_dssp ------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC--------------
T ss_pred ---------------cccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhc
Confidence 012234689999999999999999997 6799999999999999999999998643
Q ss_pred ---------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHH
Q 017492 262 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 262 ---------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~ 332 (370)
++.+....+.++.... +++|||+|||||++.|++|||++|||+|++||+++|++++.|++||.++++.|+
T Consensus 205 ~~~~g~~~~~~~~~~~~l~~~~~~~-~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~ 283 (329)
T d1p0ka_ 205 QRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLIL 283 (329)
T ss_dssp -CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccchhHhHHHHHHHHHHHHhhc-CCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHH
Confidence 3556777888887765 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhhhcccceeecc
Q 017492 333 EEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 333 ~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
+||+..|.++|++|++||++..++..+
T Consensus 284 ~el~~~m~~~G~~~i~el~~~~lv~~~ 310 (329)
T d1p0ka_ 284 EELKLIMTVLGARTIADLQKAPLVIKG 310 (329)
T ss_dssp HHHHHHHHHHTCCBHHHHTTCCEEECH
T ss_pred HHHHHHHHHhCCCCHHHhCcCCEEecc
Confidence 999999999999999999999887643
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-45 Score=348.50 Aligned_cols=273 Identities=25% Similarity=0.249 Sum_probs=221.5
Q ss_pred HhHhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHH
Q 017492 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (370)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e 115 (370)
+|+.+|++|+|+||+|+ |++++||||+|||+++++||++|||+++...++.++.++|++|++.|+++++|+++..+.+
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 48999999999999995 7889999999999999999999999988777777889999999999999999987543333
Q ss_pred H-------HhccCC-CceEEEEeecCChHHHHHHHHHH-HHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017492 116 E-------VASTGP-GIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 116 e-------i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra-~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
+ +.+..+ ...++|++.....+...+.+.++ +..+++++.++++++.. . .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~---~------------- 138 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQE------A---V------------- 138 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHH------H---H-------------
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchh------h---h-------------
Confidence 2 122233 56889998776666655556555 44789999998875421 0 0
Q ss_pred cccCccccccchhhHHHhhhcCCCCc-cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccCC--
Q 017492 187 LDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~~-- 260 (370)
. ..+..+ .|.++.+.+..++.|+++|++ .++++++.+.++|+|+|+|+||||++.
T Consensus 139 ------------------~-~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~ 199 (310)
T d1vcfa1 139 ------------------Q-RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199 (310)
T ss_dssp ------------------T-TSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHH
T ss_pred ------------------c-ccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhh
Confidence 0 011222 455666667778999999998 689999999999999999999999642
Q ss_pred ----------------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH
Q 017492 261 ----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 324 (370)
Q Consensus 261 ----------------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v 324 (370)
+.+.++.+.+.++.+.. .++|||+||||+++.|++|||++|||+|++||||+|++. .|.++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv 277 (310)
T d1vcfa1 200 VEEWVRFGEVRHPELCEIGIPTARAILEVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERV 277 (310)
T ss_dssp HHHTC--------CCTTCSCBHHHHHHHHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHH
T ss_pred cccccccCchhhhhhhhcchHHHHHHHHHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHH
Confidence 24567888888887764 589999999999999999999999999999999999754 589999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.++++.|++||+.+|.++|++|++||++.
T Consensus 278 ~~~l~~l~~El~~~m~~~G~~~i~el~g~ 306 (310)
T d1vcfa1 278 AAWIGDYLEELRTALFAIGARNPKEARGR 306 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSGGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 99999999999999999999999999865
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.94 E-value=1.1e-25 Score=219.58 Aligned_cols=255 Identities=20% Similarity=0.271 Sum_probs=179.7
Q ss_pred hcccceeeeccc-CCCCCCccceeE-cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l-~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- .+.+++|++++| .+.++..||+-|||...+ |..+|.+.+++|...++. ..+++|+..+
T Consensus 9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt------~~~mAi~ma~~GGlgVih--r~~~ie~q~~ 80 (388)
T d1eepa_ 9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQRK 80 (388)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHHHH
T ss_pred CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCC------CHHHHHHHHHCCCEEEEe--CCCCHHHHHH
Confidence 699999999643 344789999999 578999999999996553 779999999999999995 4566765432
Q ss_pred cCC---CceEEEEeecCCh---------------------------------------------------HHHHHHHHHH
Q 017492 120 TGP---GIRFFQLYVYKDR---------------------------------------------------NVVAQLVRRA 145 (370)
Q Consensus 120 ~~~---~~~~~Qly~~~d~---------------------------------------------------~~~~~~l~ra 145 (370)
... ...+ +.....+. +...+.++.+
T Consensus 81 ~v~~Vk~~~~-~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L 159 (388)
T d1eepa_ 81 EIEKVKTYKF-QKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEEL 159 (388)
T ss_dssp HHHHHHTCC---------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHH
T ss_pred HHHHhhhccc-cccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHH
Confidence 100 0000 00000000 0011111222
Q ss_pred HHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-
Q 017492 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT- 224 (370)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~- 224 (370)
.++|++.++|. + ..++.....+.++++++..
T Consensus 160 ~~aG~D~ivID--~----------------------------------------------AhG~s~~~~~~i~~ik~~~~ 191 (388)
T d1eepa_ 160 VKAHVDILVID--S----------------------------------------------AHGHSTRIIELIKKIKTKYP 191 (388)
T ss_dssp HHTTCSEEEEC--C----------------------------------------------SCCSSHHHHHHHHHHHHHCT
T ss_pred Hhhccceeeee--c----------------------------------------------cccchHHHHHHHHHHHHHCC
Confidence 22333333221 0 0112223467899999887
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHHHHHHHHHccC-CCcEEEecCCCCHHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK 297 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~k 297 (370)
++||++..+.+.+.++.++++|||+|.|.-.+|. ....|.|.+.++.++.+.... .+|||+||||+++.|++|
T Consensus 192 ~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~K 271 (388)
T d1eepa_ 192 NLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVK 271 (388)
T ss_dssp TCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHH
T ss_pred CCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceee
Confidence 7999999999999999999999999999765553 234578889999888877643 799999999999999999
Q ss_pred HHHhCCCEEEEcHHHH--------------------HHHHh-------------------------cCHH-------HHH
Q 017492 298 ALALGASGIFIGRPVV--------------------YSLAA-------------------------EGEK-------GVR 325 (370)
Q Consensus 298 alalGAd~V~igr~~l--------------------~~~~~-------------------------~G~~-------~v~ 325 (370)
||++|||+||+|++|. ++++. +|.+ .+.
T Consensus 272 Ala~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~ 351 (388)
T d1eepa_ 272 AIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLK 351 (388)
T ss_dssp HHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC------------------------------------CEECCBCHH
T ss_pred eEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhccccccccccccccccccccCceEEEeCCCCCHH
Confidence 9999999999999984 22111 1111 267
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 326 RVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 326 ~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+++.+|...||..|.++|+++|+||++.
T Consensus 352 ~~~~~l~gglrs~m~y~Ga~~l~e~~~~ 379 (388)
T d1eepa_ 352 DILTQLKGGLMSGMGYLGAATISDLKIN 379 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred HHHHHHHHHHHHHhhccCcccHHHHhhC
Confidence 8899999999999999999999999854
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.1e-23 Score=201.16 Aligned_cols=254 Identities=21% Similarity=0.298 Sum_probs=184.6
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|... ...+++|++|.|- ...+..||+-|||.... +..+|.+.+++|...++... .++++..+
T Consensus 6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~------~~~mA~als~~GGlGvi~r~--~~~e~~~~ 77 (330)
T d1vrda1 6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT------EAALAKALAREGGIGIIHKN--LTPDEQAR 77 (330)
T ss_dssp CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHTTTCEEEECSS--SCHHHHHH
T ss_pred ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeEEeecc--cchhhhHH
Confidence 699999999754 2335789999985 57899999999997653 66899999999999888644 34554322
Q ss_pred c------CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 120 ~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
. .......-+ ..+++ ..+.++.+.++|++.++|.+- .
T Consensus 78 ~i~~vk~~~~~v~~~v--gv~~~-~~e~~~~li~agvd~ivId~A--~-------------------------------- 120 (330)
T d1vrda1 78 QVSIVKKTRLLVGAAV--GTSPE-TMERVEKLVKAGVDVIVIDTA--H-------------------------------- 120 (330)
T ss_dssp HHHHHHTCCBCCEEEE--CSSTT-HHHHHHHHHHTTCSEEEECCS--C--------------------------------
T ss_pred HHHHHhhhccEEEEEE--ecCHH-HHHHHHHHHHCCCCEEEEecC--C--------------------------------
Confidence 1 111112222 22222 335566677889998877421 1
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccch
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPAT 266 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~ 266 (370)
+++....+.++++|+.. ++||++..+.+.+.++.++++|||+|.|...+|.. ...+.|.
T Consensus 121 --------------G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~ 186 (330)
T d1vrda1 121 --------------GHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ 186 (330)
T ss_dssp --------------CSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred --------------CCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceecccccc
Confidence 01112345688888876 79999999999999999999999999996544431 1245667
Q ss_pred HHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc--------------------------
Q 017492 267 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------- 319 (370)
Q Consensus 267 ~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-------------------------- 319 (370)
+..+.++.+... .++|||+||||+++.|++|||++|||+||+|+.|.-...+.
T Consensus 187 ~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~ 266 (330)
T d1vrda1 187 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSG 266 (330)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC--------
T ss_pred chhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccC
Confidence 776666655542 37999999999999999999999999999999985311110
Q ss_pred -----C--------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 320 -----G--------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 320 -----G--------~~----------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+ +| .+.+.++.|...||..|.++|+++|+||++.-
T Consensus 267 ~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~ 324 (330)
T d1vrda1 267 SADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 324 (330)
T ss_dssp -----------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred chhhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcCC
Confidence 0 12 27889999999999999999999999999753
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.92 E-value=4.1e-24 Score=206.25 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=187.7
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||+|.|+|..- .+.+++|+++.|- ...+..||+-|||... .+..+|.+..++|...++.-+ .++++..
T Consensus 12 l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV------~~~~mA~~ls~~Gglgvlhr~--~~~~e~~ 83 (365)
T d1zfja1 12 YTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTV------TGSKMAIAIARAGGLGVIHKN--MSITEQA 83 (365)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECCS--SCHHHHH
T ss_pred CCcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCc------CCHHHHHHHHHCCCceEEcCc--cCHHHHH
Confidence 3799999999643 3447899999995 5899999999999654 366899999999999999643 4565543
Q ss_pred ccC------CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcc
Q 017492 119 STG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (370)
Q Consensus 119 ~~~------~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (370)
+.. .....+..-.....+. .+.++.+.++|++.|+|. .. ++
T Consensus 84 ~~~~~~~~~~~~~~v~aavGv~~~~-~er~~~l~~agvd~ivID--~A----------~G-------------------- 130 (365)
T d1zfja1 84 EEVRKVKRSEGRLLVAAAVGVTSDT-FERAEALFEAGADAIVID--TA----------HG-------------------- 130 (365)
T ss_dssp HHHHHHHHHTSCBCCEEEECSSTTH-HHHHHHHHHHTCSEEEEC--CS----------CT--------------------
T ss_pred HHhhhhhhccCceEEEEEeccCchH-HHHHHHHHHcCCCEEEEE--CC----------cc--------------------
Confidence 211 1112222222223222 245566667899988764 21 11
Q ss_pred ccccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccc
Q 017492 193 DEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPA 265 (370)
Q Consensus 193 ~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~ 265 (370)
+.....+.++++|+.. +.||++..+.+++.++.++++|||+|.|...+|.. .-.+.|
T Consensus 131 ----------------~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvP 194 (365)
T d1zfja1 131 ----------------HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVP 194 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCC
T ss_pred ----------------cccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeecc
Confidence 1112355788888887 78999999999999999999999999997655531 335678
Q ss_pred hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------HHh------
Q 017492 266 TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA------ 318 (370)
Q Consensus 266 ~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~--------------------~~~------ 318 (370)
.+.++.++.++.. ..+|||+||||+++.|++|||++|||+||+|++|.-. ++.
T Consensus 195 q~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~ 274 (365)
T d1zfja1 195 QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKK 274 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC
T ss_pred chhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhc
Confidence 8888888866543 3799999999999999999999999999999987311 000
Q ss_pred -------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+.+.+|...||..|.++|+++|+||++.
T Consensus 275 ~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~ 335 (365)
T d1zfja1 275 GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 335 (365)
T ss_dssp --------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ccccccccccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence 010 02678899999999999999999999999864
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.91 E-value=2.8e-24 Score=208.65 Aligned_cols=254 Identities=19% Similarity=0.261 Sum_probs=184.4
Q ss_pred hcccceeeeccc-CCCCCCccceeE-cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l-~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- .+.+++|++|+| ....+..||+-|||...+ +..+|.+.+++|...++.. ..++|+..+
T Consensus 15 tfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt------~~~mA~als~~GGLGvLhr--~~~~e~~~~ 86 (378)
T d1jr1a1 15 TYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT------EAGMAIAMALTGGIGFIHH--NCTPEFQAN 86 (378)
T ss_dssp CGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTC------SHHHHHHHHHHTCEEEECC--SSCHHHHHH
T ss_pred CcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcC------CHHHHHHHHHCCCeeEEcC--CCCHHHHHH
Confidence 589999999753 344689999999 667999999999996553 6689999999999999964 455665432
Q ss_pred c-------CCCceEE-----EEe----ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 120 T-------GPGIRFF-----QLY----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 120 ~-------~~~~~~~-----Qly----~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
. ...+... +|. .+.. +.....++...++|++.+++.+-.+
T Consensus 87 ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g----------------------- 142 (378)
T d1jr1a1 87 EVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQG----------------------- 142 (378)
T ss_dssp HHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSC-----------------------
T ss_pred HHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCc-----------------------
Confidence 1 1111100 111 1111 2223344555668888877643211
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
......+.++++++.. ++||++..+.+++.++.++++|||+|.|...+|..
T Consensus 143 -------------------------~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctT 197 (378)
T d1jr1a1 143 -------------------------NSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICIT 197 (378)
T ss_dssp -------------------------CSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCH
T ss_pred -------------------------cchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccccc
Confidence 1112345678888877 79999999999999999999999999997655532
Q ss_pred ---CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------H
Q 017492 260 ---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------S 315 (370)
Q Consensus 260 ---~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~ 315 (370)
...|.|.+..+.++.++.. .++|||+||||+++.|++|||++|||+||+|++|.- +
T Consensus 198 r~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~g 277 (378)
T d1jr1a1 198 QEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRG 277 (378)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEEC
T ss_pred ccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccc
Confidence 1236677888877776553 279999999999999999999999999999998841 1
Q ss_pred HHh------------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 316 LAA------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 316 ~~~------------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
++. .|. -.+.+++..|..+||..|.++|+++|+||++
T Consensus 278 m~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~ 345 (378)
T d1jr1a1 278 MGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA 345 (378)
T ss_dssp TTSTTTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred cchhhhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence 110 010 1278899999999999999999999999985
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.91 E-value=3.3e-24 Score=207.38 Aligned_cols=253 Identities=20% Similarity=0.237 Sum_probs=185.7
Q ss_pred hcccceeeeccc--CC-CCCCccceeEc--------CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCC
Q 017492 42 AFSRILFRPRIL--ID-VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS 110 (370)
Q Consensus 42 ~~~~i~l~pr~l--~~-~~~vd~s~~l~--------g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~ 110 (370)
.||++.|+|... .. -+++|++++|. +..+..||+-|||-.. ++..+|.+.++.|...++. .
T Consensus 10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTV------t~~~mA~~la~~Gglgvih--R 81 (362)
T d1pvna1 10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV------SGEKMAIALAREGGISFIF--G 81 (362)
T ss_dssp CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTT------CSHHHHHHHHHTTCEEEEC--C
T ss_pred CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCc------CCHHHHHHHHHCCCEEEEe--e
Confidence 799999999864 32 58999999984 5678999999999544 3778999999999999994 4
Q ss_pred CCCHHHHhccC----C-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccc
Q 017492 111 TSSVEEVASTG----P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 111 ~~~~eei~~~~----~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
.+++|+..+.. . ...........+ ..+.++...++|++.++|.+ .. ++
T Consensus 82 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~ag~d~i~IDv--Ah----------G~------------ 134 (362)
T d1pvna1 82 SQSIESQAAMVHAVKNFRYLVGAGINTRD---FRERVPALVEAGADVLCIDS--SD----------GF------------ 134 (362)
T ss_dssp SSCHHHHHHHHHHHHTCCCCCEEEECSSS---HHHHHHHHHHHTCSEEEECC--SC----------CC------------
T ss_pred cCCHHHHHHHhhhhhhcccccccccchhh---hHHHHHHHhhcCceEEeech--hc----------cc------------
Confidence 56777654321 1 111111111122 22345556678999887743 11 11
Q ss_pred ccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC----
Q 017492 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (370)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~---- 259 (370)
.....+.++++++.. +.||++..+.|++.++.++++|+|+|.|.-.+|+.
T Consensus 135 ------------------------~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr 190 (362)
T d1pvna1 135 ------------------------SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITR 190 (362)
T ss_dssp ------------------------BHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHH
T ss_pred ------------------------hhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccch
Confidence 011345677777655 58999999999999999999999999998665542
Q ss_pred --CCCccchHHHHHHHHHHcc-------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH-----------------
Q 017492 260 --LDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV----------------- 313 (370)
Q Consensus 260 --~~~~~~~~~~l~~i~~~~~-------~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l----------------- 313 (370)
...|.|.+.++.+++++.+ ..+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 191 ~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~ 270 (362)
T d1pvna1 191 EQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVM 270 (362)
T ss_dssp HHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEE
T ss_pred hhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeecccee
Confidence 3356788888888876532 25999999999999999999999999999999874
Q ss_pred ---HHHHh--------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 314 ---YSLAA--------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 314 ---~~~~~--------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
|+++. +|. -.+.+++..|..+||..|.++|+++|+||+..
T Consensus 271 k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~ 340 (362)
T d1pvna1 271 KEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK 340 (362)
T ss_dssp EEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred eeeeccccccccccccccccccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 22211 011 13889999999999999999999999999863
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=7.1e-23 Score=198.09 Aligned_cols=251 Identities=20% Similarity=0.277 Sum_probs=182.5
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- .+-.++|++++|- ..++..||+-|||-.. ++..+|.+.+++|...++. ..+++|+..+
T Consensus 14 tfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV------~~~~mA~~la~~Gglgvlh--r~~~~e~~~~ 85 (368)
T d2cu0a1 14 TFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTV------TEWEMAVAMAREGGLGVIH--RNMGIEEQVE 85 (368)
T ss_dssp CGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEEC--SSSCHHHHHH
T ss_pred CcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCc------CCHHHHHHHHHCCCeeEec--ccCCHHHHHH
Confidence 899999999753 3445799999996 5899999999999654 3678999999999999996 3456665322
Q ss_pred c---------CC-------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 120 T---------GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 120 ~---------~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
. .+ ....+-.-.. ++. .+.+....++|++.|+|.+-. ++
T Consensus 86 ~v~~v~~~e~~~~~~~d~~~~~~v~~~~~--~~~-~~r~~~l~~aGvd~ivID~A~------------Gh---------- 140 (368)
T d2cu0a1 86 QVKRVKRAEKYKNAVRDENGELLVAAAVS--PFD-IKRAIELDKAGVDVIVVDTAH------------AH---------- 140 (368)
T ss_dssp HHHHHHTCCCCTTCCBCTTSCBCCEEEEC--TTC-HHHHHHHHHTTCSEEEEECSC------------CC----------
T ss_pred HHHhhhhhhhccccccccCccEEEEeccC--hHH-HHHHHHHHHcCCCEEEecCcc------------cc----------
Confidence 1 11 1111111111 111 123445567899998875311 10
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC----
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~---- 259 (370)
.....+.++++++..+.||++..+.+++.+..+ .|+|+|.|.-++|..
T Consensus 141 --------------------------~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr 192 (368)
T d2cu0a1 141 --------------------------NLKAIKSMKEMRQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTR 192 (368)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHH
T ss_pred --------------------------hhhhhhhhhhhhhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccch
Confidence 111345789999999999999999999887654 699999997666642
Q ss_pred --CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HH
Q 017492 260 --LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SL 316 (370)
Q Consensus 260 --~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~ 316 (370)
.-.|.|.+.++.++.+... ..+|||+||||+++.|++|||++|||+||+|++|-- ++
T Consensus 193 ~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm 272 (368)
T d2cu0a1 193 IVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGM 272 (368)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECT
T ss_pred hhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCc
Confidence 3357888888888876543 279999999999999999999999999999998631 11
Q ss_pred Hh-------------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 317 AA-------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 317 ~~-------------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+. +|. ..+.+++..|..+||..|.++|+++|+||++.
T Consensus 273 ~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~ 341 (368)
T d2cu0a1 273 GSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 341 (368)
T ss_dssp TSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred ccccccccCCcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhC
Confidence 00 010 13688999999999999999999999999853
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.88 E-value=2.2e-21 Score=184.02 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=165.5
Q ss_pred cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC-----------------------------
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------------- 111 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~----------------------------- 111 (370)
+||+|+|.+|+.||++|+.... .+....+.+.++|..+++...-+
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~~------~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~ 74 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS 74 (312)
T ss_dssp CCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred CcEEECCEEcCCCcEECCcCCC------CCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence 6899999999999999984333 36678888889998776632110
Q ss_pred ---------CCH----HHHh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcC
Q 017492 112 ---------SSV----EEVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (370)
Q Consensus 112 ---------~~~----eei~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~ 174 (370)
... +++. ...+ .+....+....+.+...+..+.+++.|++++.+|+.||..... ++ +
T Consensus 75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~-~~----~- 148 (312)
T d1gtea2 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGE-RG----M- 148 (312)
T ss_dssp EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC----------
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccc-cc----c-
Confidence 001 1111 1122 2334444445667777778888889999999999999963110 00 0
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC---CH-HHHHHHHHcCccEE
Q 017492 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL---TA-EDARIAVQAGAAGI 250 (370)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~---~~-~~a~~a~~aG~d~I 250 (370)
+... ..++....+.++++++.+++||++|... +. +.++.+.++|+|+|
T Consensus 149 --------------------------~~~~--~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi 200 (312)
T d1gtea2 149 --------------------------GLAC--GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGV 200 (312)
T ss_dssp ---------------------------SBG--GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEE
T ss_pred --------------------------chhh--hhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccce
Confidence 0000 0233445567899999999999999753 23 44778889999999
Q ss_pred EEccCC-ccC------------------CC---Ccc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 251 IVSNHG-ARQ------------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 251 ~vs~~g-g~~------------------~~---~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++.|+- ++. .. +|+ .+++.+.++++.+ .++|||++|||++++|++++|++|||
T Consensus 201 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~-~~ipIi~~GGI~~~~d~~~~l~aGA~ 279 (312)
T d1gtea2 201 TATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL-PGFPILATGGIDSAESGLQFLHSGAS 279 (312)
T ss_dssp EECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCCSHHHHHHHHHTTCS
T ss_pred EEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHc-CCCcEEEEcCCCCHHHHHHHHHcCCC
Confidence 998752 110 00 122 2456777777766 36999999999999999999999999
Q ss_pred EEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 305 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 305 ~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+|++|+++++ .|+. +++.+.++|+.+|...|++
T Consensus 280 ~Vqv~ta~~~----~G~~----~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 280 VLQVCSAVQN----QDFT----VIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp EEEESHHHHT----SCTT----HHHHHHHHHHHHHHHTTCG
T ss_pred eeEECHhhhc----cChH----HHHHHHHHHHHHHHHcCCC
Confidence 9999999986 4654 7789999999999999974
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.85 E-value=3.5e-20 Score=175.35 Aligned_cols=240 Identities=18% Similarity=0.139 Sum_probs=158.2
Q ss_pred cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------C
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------S 113 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~--------------------------~ 113 (370)
++|+|+|.+|+.||++|+.... .+....+.+..+|..+++. |.... .
T Consensus 2 Ls~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g 75 (311)
T d1juba_ 2 LNTTFANAKFANPFMNASGVHC------MTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred eeEEECCEecCCCCEECCCCCC------CCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCch
Confidence 6899999999999999973221 2567888888888876552 21110 1
Q ss_pred H----HHHh----ccCC-CceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 114 V----EEVA----STGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 114 ~----eei~----~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
+ +++. +..+ .+.+..+. ..+.+...+..+..+.++ ++++.+|+.||.... .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~pvi~si~-~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~----------------~~~ 138 (311)
T d1juba_ 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPG----------------EPQ 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS----------------CCC
T ss_pred hHHHHHHHHHhhhhcccCCCceeecc-ccccchhHHHHHHHhhccccceeeeccccccccc----------------ccc
Confidence 1 1111 1111 34445543 233333344444555544 567777777764200 000
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC--HH----HHHHHHHcCccEEEEccCCc
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AE----DARIAVQAGAAGIIVSNHGA 257 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~--~~----~a~~a~~aG~d~I~vs~~gg 257 (370)
...++....+.++++++.++.|+++|.... .. .++.+.+.|++++...|...
T Consensus 139 ----------------------~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (311)
T d1juba_ 139 ----------------------LAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp ----------------------GGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred ----------------------ccccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEecccccc
Confidence 001222345578999999999999999742 22 25566788899998876422
Q ss_pred cC----------------CCC---ccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 258 RQ----------------LDY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 258 ~~----------------~~~---~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.. ..+ +++ ++..+.++++....++|||++|||++++|+++++.+|||+|++++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~ 276 (311)
T d1juba_ 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred ccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh
Confidence 10 001 111 3345566666565689999999999999999999999999999999987
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
. |+. +++.+.+||+.+|...|+++++|+++.
T Consensus 277 ~----Gp~----~i~~i~~~L~~~m~~~G~~si~e~~G~ 307 (311)
T d1juba_ 277 E----GPA----IFDRIIKELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp H----CTH----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred c----ChH----HHHHHHHHHHHHHHHcCCCCHHHhcCc
Confidence 3 553 788999999999999999999999874
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.84 E-value=2.4e-20 Score=176.17 Aligned_cols=242 Identities=18% Similarity=0.188 Sum_probs=164.0
Q ss_pred CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceee-cCC--------------------------
Q 017492 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW-------------------------- 109 (370)
Q Consensus 57 ~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-s~~-------------------------- 109 (370)
++..++|+|+|.+|+.||++|+..... +..+.+.+...|..+++ .+.
T Consensus 3 ~~~~L~~~~~Gl~l~nPi~~aAG~~~~------~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~ 76 (311)
T d1ep3a_ 3 ENNRLSVKLPGLDLKNPIIPASGCFGF------GEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTTSSTT------STTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCcceEEECCEEcCCCcEECCCCCCC------CHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccc
Confidence 567899999999999999999621111 11233333444443332 110
Q ss_pred CCCCHHHH--------hccCC-CceEEEEeecCChHHHHHHHHHHH-HcCCcEEEEecCCCCCcchhHHhhhhcCCCCcc
Q 017492 110 STSSVEEV--------ASTGP-GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (370)
Q Consensus 110 ~~~~~eei--------~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~-~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~ 179 (370)
.+..++.+ .+..+ .+.+.|+. ..+.+...+.+++.. .+|+++|.+|+.||....
T Consensus 77 ~~~g~~~~~~~~~~~~~~~~~~~pii~si~-~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~--------------- 140 (311)
T d1ep3a_ 77 QNPGLEVIMTEKLPWLNENFPELPIIANVA-GSEEADYVAVCAKIGDAANVKAIELNISCPNVKH--------------- 140 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEEC-CSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG---------------
T ss_pred cchhHHHHhhhhhhhhhcccCCCccccccc-chhhhHHHHHHHHHhhcccccccccccCCCcccc---------------
Confidence 11223322 12222 57888986 345555556665553 479999999999995210
Q ss_pred ccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC----CHHHHHHHHHcCccEEEEccC
Q 017492 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~----~~~~a~~a~~aG~d~I~vs~~ 255 (370)
... .. ..++....+.++++++..+.|+++|... ..+.++.+.++|+|+++++|.
T Consensus 141 ~~~--------------------~~--~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~ 198 (311)
T d1ep3a_ 141 GGQ--------------------AF--GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp TTE--------------------EG--GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCC
T ss_pred ccc--------------------cc--ccCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEee
Confidence 000 00 0133334556788888889999999863 356788899999999999875
Q ss_pred CccC-----------C--C---Ccc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 256 GARQ-----------L--D---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 256 gg~~-----------~--~---~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.+.. . . .|+ .+++.+.++++.+ ++|||++|||++++|+.+++.+|||+||+||+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~- 275 (311)
T d1ep3a_ 199 LMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA- 275 (311)
T ss_dssp EEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-
T ss_pred ccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-
Confidence 3210 0 0 122 2456677776655 89999999999999999999999999999999864
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 316 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
++ .++..+.++|..+|+..|+++++|+++.
T Consensus 276 ----~P----~i~~~I~~~L~~~m~~~g~~si~e~~g~ 305 (311)
T d1ep3a_ 276 ----DP----FVCPKIIDKLPELMDQYRIESLESLIQE 305 (311)
T ss_dssp ----CT----THHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ----CC----hHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 22 2578889999999999999999999764
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.3e-19 Score=171.14 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=171.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC------C--HHHHhcc-CCCceEEEEeecCChHHHHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------S--VEEVAST-GPGIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~------~--~eei~~~-~~~~~~~Qly~~~d~~~~~~~l~ 143 (370)
.|.+|||.+.+ |.++++.|.+.|...+.|+|.+. . ..++... .+.|..+||+ ++|++.+.+..+
T Consensus 2 ki~LAPM~g~t------d~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~-g~~p~~~~~aa~ 74 (305)
T d1vhna_ 2 KVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELSEAAR 74 (305)
T ss_dssp EEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHHHHHH
T ss_pred eEEEECcCCCc------cHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEe-ccchhhhhhhhh
Confidence 47899998875 88999999999999988988431 1 1122221 1268999998 678888777776
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+ +.|++.|.+|++||.. ++... +.+..++ .+|+...+.++.+++.
T Consensus 75 ~~-~~~~~~IdlN~GCP~~---------------~v~~~----------------g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (305)
T d1vhna_ 75 IL-SEKYKWIDLNAGCPVR---------------KVVKE----------------GAGGALL--KDLRHFRYIVRELRKS 120 (305)
T ss_dssp HH-TTTCSEEEEEECCCCH---------------HHHHT----------------TCGGGGG--SCHHHHHHHHHHHHHH
T ss_pred hh-hhheeeeeEEEEecch---------------hhccc----------------ccceeec--cCHHHHHHHhhhhhhh
Confidence 54 4599999999999973 11111 1122333 4777788899999999
Q ss_pred cCCcEEEEecC------CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH
Q 017492 224 TKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 297 (370)
Q Consensus 224 ~~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k 297 (370)
+++||.+|... ..+.++.+.++|++.|+|.+.-..|...+++.|+.+++++ .++||++.|||.+.+|+.+
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~----~~ipvi~NGdI~s~~d~~~ 196 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE----KRIPTFVSGDIFTPEDAKR 196 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC----CSSCEEEESSCCSHHHHHH
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh----hhhhhhcccccccHHHHHH
Confidence 99999999863 2466889999999999994332335667888888876543 3799999999999999999
Q ss_pred HHH-hCCCEEEEcH-----HHHHHHHh----cCH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcccce
Q 017492 298 ALA-LGASGIFIGR-----PVVYSLAA----EGE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHI 355 (370)
Q Consensus 298 ala-lGAd~V~igr-----~~l~~~~~----~G~---~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~~~~l 355 (370)
++. .|+|+||+|| ||++.-.. ++. ....+.++.+.+.++......|.. .+..++++..
T Consensus 197 ~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~ 268 (305)
T d1vhna_ 197 ALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268 (305)
T ss_dssp HHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred HHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 997 6999999999 66665321 111 123456667777777777766643 4566666543
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.2e-18 Score=166.70 Aligned_cols=272 Identities=18% Similarity=0.167 Sum_probs=164.4
Q ss_pred hhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC
Q 017492 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST 111 (370)
Q Consensus 33 ~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~ 111 (370)
|.+++-....+ ++.+.|.. +.....+++|+|+|.+++.||++|+ |.. ++....+.+.++|..+++. |...
T Consensus 24 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~v~~~Gl~~~nPi~lAs-G~~------~~~~~i~~~~~~G~G~vv~kTit~ 94 (367)
T d1d3ga_ 24 ESAHRLAVRFT-SLGLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GFD------KHGEAVDGLYKMGFGFVEIGSVTP 94 (367)
T ss_dssp HHHHHHHHHHH-HTTCCC----CCCCGGGCEEETTEEESSSEEECT-TSS------TTSSSHHHHHHHTCSEEEEEEECS
T ss_pred HHHHHHHHHHH-HhcCcccc-ccCCCCCCceEECCEecCCCcEeCc-CCC------CCHHHHHHHhhcCCcEEeeccccc
Confidence 33333333333 35556653 3345667999999999999999987 221 1223567777888776662 2211
Q ss_pred C----------------------------CHHHHhc-------------cCCCceEEEEeecCC---hHHHHHHHHHHHH
Q 017492 112 S----------------------------SVEEVAS-------------TGPGIRFFQLYVYKD---RNVVAQLVRRAER 147 (370)
Q Consensus 112 ~----------------------------~~eei~~-------------~~~~~~~~Qly~~~d---~~~~~~~l~ra~~ 147 (370)
. ..+.+.+ ...-|....+....+ .........+..+
T Consensus 95 ~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~ 174 (367)
T d1d3ga_ 95 KPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLG 174 (367)
T ss_dssp SCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHG
T ss_pred cccccCCchhhhhhccccccccccCcCCcchHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhh
Confidence 0 1111110 000134444432211 1122233344455
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCc
Q 017492 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 227 (370)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~P 227 (370)
.+++++.+|+-||.... . ... + ....... +.....+...+++...++|
T Consensus 175 ~~ad~lelNiScPn~~~--------------~--~~~--------~-----~~~~~~~---~~~~~~~~~~~~~~~~~~P 222 (367)
T d1d3ga_ 175 PLADYLVVNVSSPNTAG--------------L--RSL--------Q-----GKAELRR---LLTKVLQERDGLRRVHRPA 222 (367)
T ss_dssp GGCSEEEEESCCTTSTT--------------C-------------------CHHHHHH---HHHHHHHHHHTSCGGGCCE
T ss_pred hcccccccccccccccc--------------c--ccc--------c-----ccchhhh---HHHHHHHhhhhcccccCCc
Confidence 68888888888875310 0 000 0 0000000 0000111223333345789
Q ss_pred EEEEecCC--HH----HHHHHHHcCccEEEEccCC-ccC---------CCC---cc----chHHHHHHHHHHccCCCcEE
Q 017492 228 ILVKGVLT--AE----DARIAVQAGAAGIIVSNHG-ARQ---------LDY---VP----ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 228 v~vK~v~~--~~----~a~~a~~aG~d~I~vs~~g-g~~---------~~~---~~----~~~~~l~~i~~~~~~~ipvi 284 (370)
+++|...+ .. .++.+.++|+|+|++.|.- +.. ..+ |+ .....+..+++..+.++|||
T Consensus 223 v~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIi 302 (367)
T d1d3ga_ 223 VLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII 302 (367)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE
T ss_pred cccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEE
Confidence 99999743 32 3677889999999998752 110 011 22 24456777777666689999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
++|||.+++|+++.|.+||++|++|+++++. |+. +++.+.++|+.+|+..|+++++|+++.
T Consensus 303 g~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~----Gp~----ii~~I~~~L~~~l~~~G~~si~dl~G~ 363 (367)
T d1d3ga_ 303 GVGGVSSGQDALEKIRAGASLVQLYTALTFW----GPP----VVGKVKRELEALLKEQGFGGVTDAIGA 363 (367)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHTTCSSHHHHTTG
T ss_pred EECCCCCHHHHHHHHHcCCCHHHhhHHHHhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHhcCh
Confidence 9999999999999999999999999998763 664 788999999999999999999999875
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.78 E-value=1.4e-17 Score=171.00 Aligned_cols=265 Identities=20% Similarity=0.184 Sum_probs=180.2
Q ss_pred ecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccC----CCceEEEEeecCChHHHHHHHHHH
Q 017492 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRRA 145 (370)
Q Consensus 70 l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~----~~~~~~Qly~~~d~~~~~~~l~ra 145 (370)
+-.||.++.|+++.++ ++.-.+++++|.+.|.....++.. .+.+...... .+..++|+. ......+.+.+
T Consensus 427 I~k~f~isaMSfGALS-~~A~~aLa~ga~~~g~~~ntGEGG-~~~~~~~~~~~~~~~~~~i~q~a-sgrfG~~~~~l--- 500 (771)
T d1ea0a2 427 IRKRFITPGMSMGALS-PEAHGTLNVAMNRIGAKSDSGEGG-EDPARFRPDKNGDNWNSAIKQVA-SGRFGVTAEYL--- 500 (771)
T ss_dssp HHTTEEEEECCBTTBC-HHHHHHHHHHHHHTTCEEECCTTC-CCGGGSSBCTTSCBCCCSEEEEC-SSCTTCCHHHH---
T ss_pred hheeeccccccccccC-HHHHHHHHHHHHhcCCeeecCCCC-CChhhccccCCCcccccccceec-CCcCCcCHHHh---
Confidence 3469999999999764 567789999999999988777764 4444432211 134678865 33444444443
Q ss_pred HHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCc-cHH----HHHH
Q 017492 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWK----DVKW 219 (370)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~----~i~~ 219 (370)
..+++|.|-+.--. ++. .|-.+|. +++. .+..+. ........+++..++++ +.+ .|.+
T Consensus 501 --~~~~~ieIK~~QGA---KpG---~GG~Lpg~KVt~-~IA~~R-------~~~~G~~~iSP~~h~di~siedL~~~I~~ 564 (771)
T d1ea0a2 501 --NQCRELEIKVAQGA---KPG---EGGQLPGFKVTE-MIARLR-------HSTPGVMLISPPPHHDIYSIEDLAQLIYD 564 (771)
T ss_dssp --TSCSEEEEECCCTT---STT---TCCEECGGGCCH-HHHHHH-------TCCTTCCEECCSSCTTCSSHHHHHHHHHH
T ss_pred --cccceeEEeeeccc---ccc---cccccccccCCH-HHHHhc-------CCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 45677777654221 000 0011111 1110 000000 00000112233334443 444 4778
Q ss_pred HHHhc-CCcEEEEecCC--H-HHHHHHHHcCccEEEEccC-CccC-------CCCccchHHHHHHHHHHc-----cCCCc
Q 017492 220 LQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIP 282 (370)
Q Consensus 220 ir~~~-~~Pv~vK~v~~--~-~~a~~a~~aG~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ip 282 (370)
+|+.. +.||.||.+.. . ..+..+.++|+|.|+|+++ ||+. .+.|.|....|.++.+++ ++++.
T Consensus 565 Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~ 644 (771)
T d1ea0a2 565 LKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVR 644 (771)
T ss_dssp HHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSE
T ss_pred HHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceE
Confidence 88876 79999999743 3 4466677999999999997 4542 236788888899888875 46899
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc---------------------------CHHHHHHHHHHHHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEMLREEF 335 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~---------------------------G~~~v~~~l~~l~~el 335 (370)
++++||++++.|++|+++||||+|.+||++|+++.|. ..+.|.+++..+.+|+
T Consensus 645 l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e~ 724 (771)
T d1ea0a2 645 LRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEV 724 (771)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998862 2467999999999999
Q ss_pred HHHHHHcCCCChhhh-ccccee
Q 017492 336 ELAMALSGCRSLKEI-TRDHIV 356 (370)
Q Consensus 336 ~~~m~~~G~~~l~~l-~~~~l~ 356 (370)
+..|..+|.++++|+ .+.++.
T Consensus 725 ~~~~~~~G~~s~~~lvG~~dll 746 (771)
T d1ea0a2 725 REILAGLGFRSLNEVIGRTDLL 746 (771)
T ss_dssp HHHHHHHTCSCSGGGTTCGGGE
T ss_pred HHHHHHHcCCCHHHhccchhhh
Confidence 999999999999998 345543
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.76 E-value=1.5e-17 Score=162.87 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=98.0
Q ss_pred CCcEEEEecC--CH----HHHHHHHHcCccEEEEccCC-ccC-------CCCcc-------chHHHHHHHHHHccCCCcE
Q 017492 225 KLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVP-------ATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 225 ~~Pv~vK~v~--~~----~~a~~a~~aG~d~I~vs~~g-g~~-------~~~~~-------~~~~~l~~i~~~~~~~ipv 283 (370)
..||++|+.. +. +.+..+.++|+|+|+++|.- ++. ..+|. .+...+.++++.+.+++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 4589999975 32 34677889999999999852 211 12222 2446778888877778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
|++|||.+++|+++.+.+||++|++|+.+++. |+. +++.+.+||..+|+..|+++++|+++.
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~----Gp~----~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc----ChH----HHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 99999999999999999999999999999873 554 678999999999999999999999864
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.74 E-value=7.6e-17 Score=166.08 Aligned_cols=264 Identities=19% Similarity=0.158 Sum_probs=173.6
Q ss_pred ecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhcc--------------------CC--CceEE
Q 017492 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST--------------------GP--GIRFF 127 (370)
Q Consensus 70 l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~--------------------~~--~~~~~ 127 (370)
+-.||.++.|+++.+. ++.-.+++++|.+.|.....++.. .+.+..... .. .....
T Consensus 436 I~k~f~~~aMS~GslS-~~a~~ala~aa~~~G~~~ntGEGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~ 513 (809)
T d1ofda2 436 IVKRFCTGGMSLGALS-REAHETLAIAMNRLGAKSNSGEGG-EDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIK 513 (809)
T ss_dssp HHTTEECCCBCTTTSC-HHHHHHHHHHHHHHTCBCEECTTC-CCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEE
T ss_pred hhhhhccccccccccc-HHHHHHHHHHHHHhCceecCCCCC-CCceeeeccCccccccCcccccccccccCCCCCcchhH
Confidence 4579999999998764 557789999999999988887775 333322100 00 12345
Q ss_pred EEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhh
Q 017492 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 128 Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
|+- .....++.+.+..+ +.|.|-+.--. ++. .|-.+|. +++. .+..+. ........+++
T Consensus 514 q~a-sgrfGv~~~~l~~~-----~~ieIK~~QGA---KPG---~GG~Lpg~KVt~-~IA~~R-------~~~~G~~liSP 573 (809)
T d1ofda2 514 QIA-SGRFGVTPEYLMSG-----KQLEIKMAQGA---KPG---EGGQLPGKKVSE-YIAMLR-------RSKPGVTLISP 573 (809)
T ss_dssp EEC-TTCTTCCHHHHHHC-----SEEEEECCCTT---STT---SCCEECGGGCCH-HHHHHH-------TSCTTCCEECC
T ss_pred hhh-hcccCCChhhhccc-----ceEEEEEeccc---ccc---cccccchhhcCH-HHHhhc-------CCCCCCCCCCC
Confidence 643 34445555555443 55555543211 000 0001111 1110 000000 00000112233
Q ss_pred cCCCCc-cHH----HHHHHHHhc-CCcEEEEecCC--H-HHHHHHHHcCccEEEEccC-CccC-------CCCccchHHH
Q 017492 207 QIDRSL-SWK----DVKWLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMA 269 (370)
Q Consensus 207 ~~d~~~-~~~----~i~~ir~~~-~~Pv~vK~v~~--~-~~a~~a~~aG~d~I~vs~~-gg~~-------~~~~~~~~~~ 269 (370)
..++++ +.+ .|.++|+.. +.||.||.+.. . ..+....++|+|.|.|+++ ||+. .+.|.|....
T Consensus 574 ~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~g 653 (809)
T d1ofda2 574 PPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELG 653 (809)
T ss_dssp SSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHH
Confidence 334443 444 377788776 67999999843 3 3455667899999999997 4553 2357788888
Q ss_pred HHHHHHHc-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-------------------------
Q 017492 270 LEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------- 319 (370)
Q Consensus 270 l~~i~~~~-----~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~------------------------- 319 (370)
|.++.+++ ++++.++++||++++.|++|+++||||+|.+||.+|+++.|.
T Consensus 654 l~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~ 733 (809)
T d1ofda2 654 VTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRF 733 (809)
T ss_dssp HHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTC
T ss_pred HHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhC
Confidence 88888765 468999999999999999999999999999999999998762
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccce
Q 017492 320 --GEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHI 355 (370)
Q Consensus 320 --G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~-~~~l 355 (370)
.++.|.+++..+.+|++..|+.+|.++++|+. +.++
T Consensus 734 ~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvGr~dl 772 (809)
T d1ofda2 734 KGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDL 772 (809)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhcChHhh
Confidence 24579999999999999999999999999984 4444
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.73 E-value=1.5e-17 Score=157.21 Aligned_cols=240 Identities=18% Similarity=0.173 Sum_probs=150.1
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------~ 112 (370)
+++|+|+|.+|+.||++|+-... .+....+.+.+.|..+++. |... .
T Consensus 1 sL~v~~~Gl~l~nPi~~aaG~~~------~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~ 74 (312)
T d2b4ga1 1 SLKVNILGHEFSNPFMNAAGVLC------TTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNL 74 (312)
T ss_dssp CCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBS
T ss_pred CCcEEECCEECCCCcEeCcCCCC------CCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcc
Confidence 57999999999999999862121 2446777888888877653 2110 1
Q ss_pred CHHH----HhccC---CCceEEEEeecCChHHHHHHHHH---HHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 113 SVEE----VASTG---PGIRFFQLYVYKDRNVVAQLVRR---AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 113 ~~ee----i~~~~---~~~~~~Qly~~~d~~~~~~~l~r---a~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
.++. +.+.. ..+.+..+... ..+...+..++ ..+.+++++.+|+-||.... .+
T Consensus 75 G~~~~~~~l~~~~~~~~~pii~si~g~-~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~----------------~~ 137 (312)
T d2b4ga1 75 GVDFYLSYAAQTHDYSRKPLFLSMSGL-SVEESVEMVKKLVPITKEKGTILELNLSCPNVPG----------------KP 137 (312)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEECCS-SHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTT----------------CC
T ss_pred hHHHHHHHHHHhhhccccceecccccc-ccccHHHHHHHHHHhhhhcccceeeccccCCcCc----------------ch
Confidence 1221 22111 12344444322 22222223322 23456677777777764200 00
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC--HHH----HHHHHHc-CccEEEEccC
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AED----ARIAVQA-GAAGIIVSNH 255 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~--~~~----a~~a~~a-G~d~I~vs~~ 255 (370)
. +. .+++...+.++++++.+++|+++|.... ... +..+.++ +++++...|.
T Consensus 138 ~--------------------~~--~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt 195 (312)
T d2b4ga1 138 Q--------------------VG--YDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNS 195 (312)
T ss_dssp C--------------------GG--GCHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCC
T ss_pred h--------------------hh--ccHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhccc
Confidence 0 00 1223345678999999999999999743 222 2223233 4555544442
Q ss_pred Ccc---------CC-------CC---ccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 256 GAR---------QL-------DY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 256 gg~---------~~-------~~---~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
-+. +. .+ |++ ++..+..+++.++ ..||++.|||++++|+++++.+||++|++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal 274 (312)
T d2b4ga1 196 IGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTAL 274 (312)
T ss_dssp EEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHH
T ss_pred ccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhh
Confidence 111 00 11 222 3456666666653 567999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 313 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
++. |+. +++.+.+||..+|+..|++|++|+++.
T Consensus 275 ~~~----Gp~----~i~~i~~~L~~~l~~~G~~si~e~~G~ 307 (312)
T d2b4ga1 275 HDE----GPI----IFARLNKELQEIMTNKGYKTLDEFRGR 307 (312)
T ss_dssp HHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred Hhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHHcCe
Confidence 873 663 788999999999999999999999875
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=8.9e-14 Score=132.34 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHHHhcCCcEEEEecCCH------HHHHHHHHcCccEEEEccCC-ccC---------CCC---ccc----hHHHHHHHH
Q 017492 218 KWLQTITKLPILVKGVLTA------EDARIAVQAGAAGIIVSNHG-ARQ---------LDY---VPA----TIMALEEVV 274 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v~~~------~~a~~a~~aG~d~I~vs~~g-g~~---------~~~---~~~----~~~~l~~i~ 274 (370)
.+.+...++||++|+..+. +.+..+.+.|++++...|.- ++. ..+ |++ ++..+.+++
T Consensus 204 ~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~ 283 (336)
T d1f76a_ 204 LQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS 283 (336)
T ss_dssp HHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH
T ss_pred hhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 3444456899999997532 23667788999999998742 111 112 222 445677777
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017492 275 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 275 ~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.++.++|||++|||.+++|+.+.+.+||++|++|+++++. |+. +++.+.+|
T Consensus 284 ~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~----Gp~----ii~~I~~e 335 (336)
T d1f76a_ 284 LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFK----GPP----LIKEIVTH 335 (336)
T ss_dssp HHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CHH----HHHHHHHH
T ss_pred HHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhc----ChH----HHHHHHhh
Confidence 77767899999999999999999999999999999998763 665 44555554
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.49 E-value=3.5e-13 Score=120.60 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccch-HHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.|+.+++++..+..+++.+.+.+.++++.+.++|+|+|.++++++++.+..... ...+.++.... ++||+++|||++
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t 194 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHS 194 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCS
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCCCCC
Confidence 578899999988888888999999999999999999999988877655443332 22344444444 899999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
++|+.+++++|||+|++|+++.
T Consensus 195 ~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 195 PEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp HHHHHHHHTTCCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999999875
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.44 E-value=1.8e-12 Score=115.04 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=83.9
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC----ccchHHHHHHHHHHccCCCcEEEecC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.++.++++++....+++...+.+.+++..+.+.|+|+|.+.+++++.... ..+.++.+.++.+.+ ++||+++||
T Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GG 183 (222)
T d1y0ea_ 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (222)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCC
Confidence 45678888888888888899999999999999999999998886543322 234567778887776 899999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
|+|++|+.+++++|||+|++||++.
T Consensus 184 I~t~~d~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 184 VITPDMYKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEchhhc
Confidence 9999999999999999999999875
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=1.2e-10 Score=110.51 Aligned_cols=227 Identities=18% Similarity=0.167 Sum_probs=138.9
Q ss_pred ceeEcCeeecCceeecccccccccCCh-----hhHHHHHHHHHcCCceeecCCCC--------------CCHH------H
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWST--------------SSVE------E 116 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~-----~e~~la~aa~~~G~~~~~s~~~~--------------~~~e------e 116 (370)
..+|.+.++++-|++|||+-.....++ -.+..-+.-++-|+.+++++... .+.+ +
T Consensus 7 P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~ 86 (337)
T d1z41a1 7 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 86 (337)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHH
Confidence 367889999999999999633211111 12343334445677777754311 1111 1
Q ss_pred Hhcc---CCCceEEEEeecC---------------------------Ch-------HHHHHHHHHHHHcCCcEEEEecCC
Q 017492 117 VAST---GPGIRFFQLYVYK---------------------------DR-------NVVAQLVRRAERAGFKAIALTVDT 159 (370)
Q Consensus 117 i~~~---~~~~~~~Qly~~~---------------------------d~-------~~~~~~l~ra~~~G~~ai~itvd~ 159 (370)
+.+. .....++||+-.. .. +...+..++|+++|++.+.|+...
T Consensus 87 l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ah 166 (337)
T d1z41a1 87 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 166 (337)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccC
Confidence 2221 2256788986422 11 333444567888999999999642
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec------
Q 017492 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------ 233 (370)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v------ 233 (370)
|+ +-+.|--| ..+.++ ..-+.+. . ....|..|+++.||+.++.|++++..
T Consensus 167 ---Gy----Ll~qFlSp-~~N~Rt----------DeYGGs~---e---nR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 167 ---GY----LIHEFLSP-LSNHRT----------DEYGGSP---E---NRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 222 (337)
T ss_dssp ---TS----HHHHHHCT-TTCCCC----------STTSSSH---H---HHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred ---cc----eeeeecCC-cccccc----------ccccchh---h---hhhhHHHHHHHHHhhhhcccceEEeccccccc
Confidence 21 22233111 111110 0000000 0 11135788999999999999999975
Q ss_pred --CCHH----HHHHHHHcCccEEEEccCCccCCC--Cccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-C
Q 017492 234 --LTAE----DARIAVQAGAAGIIVSNHGARQLD--YVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (370)
Q Consensus 234 --~~~~----~a~~a~~aG~d~I~vs~~gg~~~~--~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-A 303 (370)
.+.+ .++.+.++|+|.+.++.......+ ..+. .......+++.+ ++||++.|+|.+++++.++|+-| |
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~ 300 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRA 300 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSC
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc--CceEEEeCCcCCHHHHHHHHHCCCc
Confidence 2333 367788999999999754322111 1111 334556677777 89999999999999999999999 9
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|.|++||+++.
T Consensus 301 D~V~~gR~~ia 311 (337)
T d1z41a1 301 DLIFIGRELLR 311 (337)
T ss_dssp SEEEECHHHHH
T ss_pred ceehhhHHHHh
Confidence 99999999985
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.4e-09 Score=101.00 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=73.9
Q ss_pred CccHHHHHHHHHhc--CCcEEEEec--------CCHHH----HHHHHHcCccEEEEccCCcc--CCC-Cc--c-c-hHHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QLD-YV--P-A-TIMA 269 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~~gg~--~~~-~~--~-~-~~~~ 269 (370)
.|..|.|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|.+.++..+.. ... .. + . ....
T Consensus 192 Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (330)
T d1ps9a1 192 RFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWV 271 (330)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHH
Confidence 35788999999998 478888874 23443 56778899999998753221 111 11 1 1 1223
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
...+++.+ ++||++.|+|++++++.++|+-| ||+|++||+|+.
T Consensus 272 ~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 272 TRKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp HHHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHHhhC--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 34454444 79999999999999999999999 999999999984
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.10 E-value=1e-09 Score=103.94 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=74.4
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC---------C----HHHHHHHHHcCccEEEEccCCccC----CC-----Cccch
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL---------T----AEDARIAVQAGAAGIIVSNHGARQ----LD-----YVPAT 266 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~---------~----~~~a~~a~~aG~d~I~vs~~gg~~----~~-----~~~~~ 266 (370)
.|..|+++.||+.+ +.||.+|... . ...+..+.+.|+|.+.++...-.+ .. .....
T Consensus 200 Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~ 279 (340)
T d1djqa1 200 RFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHT 279 (340)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTT
T ss_pred HHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCcccc
Confidence 35788999999999 5789999641 1 123556778999999997532111 00 11113
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+.....+++.+ ++|||+.|||++++++.++|+.| ||.|++||+++.
T Consensus 280 ~~~~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia 326 (340)
T d1djqa1 280 IPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (340)
T ss_dssp HHHHHHHHTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence 33445555554 89999999999999999999999 999999999974
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=1.3e-08 Score=89.05 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=118.5
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+.+....+.+...++++.+.+.|++.+.||+.+|..-.-.++++..+. |. .+...++... ...+.....+....+
T Consensus 11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~~~~vGaGTV~~~--~~~~~a~~aGa~fiv 87 (202)
T d1wa3a1 11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-KGAIIGAGTVTSV--EQCRKAVESGAEFIV 87 (202)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-TTCEEEEESCCSH--HHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-CCcEEEecccccH--HHHHHHHhhcccEEe
Confidence 4555557788888889999999999999999999875444444443221 21 1222222100 000111111222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.++..++ .++|++ -++.|+.++..+.++|+|.+.++-.. ..|+ ..+..+...+ .++|++
T Consensus 88 ----sP~~~~~v~~~~~~-~~i~~i-PGv~TpsEi~~A~~~G~~~lK~fPa~----~~G~---~~lk~l~~p~-p~i~~i 153 (202)
T d1wa3a1 88 ----SPHLDEEISQFCKE-KGVFYM-PGVMTPTELVKAMKLGHTILKLFPGE----VVGP---QFVKAMKGPF-PNVKFV 153 (202)
T ss_dssp ----CSSCCHHHHHHHHH-HTCEEE-CEECSHHHHHHHHHTTCCEEEETTHH----HHHH---HHHHHHHTTC-TTCEEE
T ss_pred ----CCCCcHHHHHHHHh-cCCcee-CCcCcHHHHHHHHHCCCCEEEecchh----hcCH---HHHHHHhCcc-cCCcEE
Confidence 34556666666665 477765 77999999999999999999995321 0111 3445444434 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 335 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el 335 (370)
.+||| +.+++..++.+||.+|++|+.++. ...+.+.+..+.+.+.+
T Consensus 154 ptGGI-~~~n~~~~l~aga~avg~Gs~l~~----~~~~~i~~~a~~~~~~~ 199 (202)
T d1wa3a1 154 PTGGV-NLDNVCEWFKAGVLAVGVGSALVK----GTPDEVREKAKAFVEKI 199 (202)
T ss_dssp EBSSC-CTTTHHHHHHHTCSCEEECHHHHC----SCHHHHHHHHHHHHHHH
T ss_pred eeCCC-CHHHHHHHHHCCCeEEEEchhhcC----CCHHHHHHHHHHHHHHH
Confidence 99999 679999999999999999998763 22444444444444433
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.77 E-value=3.1e-07 Score=83.51 Aligned_cols=157 Identities=16% Similarity=0.144 Sum_probs=103.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.+.+.++++.+.+.|++.+.+.+ |.. -|.- +.+..+ .+....+......+
T Consensus 27 ~P~~~~~~~~~~~l~~~GaDiiElGi--PfS------------DP~a---------DGpvIq----~a~~~al~~G~~~~ 79 (267)
T d1qopa_ 27 DPGIEQSLKIIDTLIDAGADALELGV--PFS------------DPLA---------DGPTIQ----NANLRAFAAGVTPA 79 (267)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEEC--CCS------------CCTT---------CCHHHH----HHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------cccc---------cchHHH----hhhhhcccccchhh
Confidence 34678889999999999999988753 321 1210 000001 11122222222223
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCcc---------C
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR---------Q 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg~---------~ 259 (370)
..++.++.+|+.. +.|+++-+..+ .+.++.+.++|+|++.+-. ||-. .
T Consensus 80 ~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~ 159 (267)
T d1qopa_ 80 QCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNAD 159 (267)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCC
T ss_pred hhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEeccccc
Confidence 3567788899885 79999887533 2457899999999999842 1100 0
Q ss_pred -------------------C--CCc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------L--DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~--~~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
. -+| ....+.+.++++.. ++||++-.||++++|+.+++..|||+|.+|+++
T Consensus 160 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAi 237 (267)
T d1qopa_ 160 DDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAI 237 (267)
T ss_dssp HHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECHHH
Confidence 0 011 11234566666654 899999999999999999999999999999999
Q ss_pred HHHHH
Q 017492 313 VYSLA 317 (370)
Q Consensus 313 l~~~~ 317 (370)
+..+.
T Consensus 238 vk~i~ 242 (267)
T d1qopa_ 238 VKIIE 242 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.76 E-value=3.6e-07 Score=82.77 Aligned_cols=178 Identities=22% Similarity=0.259 Sum_probs=109.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.++++...++|++.|.+.+ |.. -|- - +.+..+ .+....+......+
T Consensus 27 ~P~~~~~~~~l~~l~~~G~DiiElGi--PfS------------DP~--a-------DGpvIq----~a~~rAL~~G~~~~ 79 (261)
T d1rd5a_ 27 DPDLATTAEALRLLDGCGADVIELGV--PCS------------DPY--I-------DGPIIQ----ASVARALASGTTMD 79 (261)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEEC--CCS------------CCT--T-------SCHHHH----HHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CcC--c-------CCccee----eeeeeccccCcchh
Confidence 44688889999999999999988753 321 121 0 000001 11112222212222
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHH---HHHHHHcCccEEEEcc---------------CCc---------c------
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAED---ARIAVQAGAAGIIVSN---------------HGA---------R------ 258 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~---a~~a~~aG~d~I~vs~---------------~gg---------~------ 258 (370)
-.++.++++|+..+.|+++-...++-. .+.+.++|+|++.+-. ||= +
T Consensus 80 ~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~ 159 (261)
T d1rd5a_ 80 AVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMK 159 (261)
T ss_dssp HHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHH
T ss_pred hhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHH
Confidence 356778999988899998776543311 4566788999888731 110 0
Q ss_pred ----------------CCCCc-----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 259 ----------------QLDYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 259 ----------------~~~~~-----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
...+. ....+.+..+++.. ++||++-.||++++|+.+....|||+|.+|++++.-+.
T Consensus 160 ~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~ 237 (261)
T d1rd5a_ 160 EITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLG 237 (261)
T ss_dssp HHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 00011 11234666666654 89999999999999999888899999999999998654
Q ss_pred hcC--HHHHHHHHHHHHHHHHHHH
Q 017492 318 AEG--EKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 318 ~~G--~~~v~~~l~~l~~el~~~m 339 (370)
... .+.+ +.++.+.++|+.++
T Consensus 238 ~~~~~~~~~-~~~~~~~~~lk~al 260 (261)
T d1rd5a_ 238 EAASPKQGL-RRLEEYARGMKNAL 260 (261)
T ss_dssp SSSSHHHHH-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHH-HHHHHHHHHHHHhh
Confidence 322 2222 34555566665543
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.63 E-value=4.5e-07 Score=81.41 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C--
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q-- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~-- 259 (370)
..++.++++|+..+.|+++-+..++ +.++.+.++|+|++.+-. ||-. .
T Consensus 67 ~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~ 146 (248)
T d1geqa_ 67 EAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPD 146 (248)
T ss_dssp HHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCH
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchh
Confidence 3677899999988999998876443 447889999999999831 1100 0
Q ss_pred ------------------CC--Cc----c--chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------------------LD--YV----P--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------------------~~--~~----~--~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.. +| . ...+.+.++++.. ++||++--||++++|+.+++..|||+|.+|++++
T Consensus 147 ~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv 224 (248)
T d1geqa_ 147 ERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp HHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 00 11 1 1234566776664 8999999999999999999999999999999999
Q ss_pred HHHHhcCH
Q 017492 314 YSLAAEGE 321 (370)
Q Consensus 314 ~~~~~~G~ 321 (370)
.-+...+.
T Consensus 225 ~~i~~~~~ 232 (248)
T d1geqa_ 225 KIIGEKGR 232 (248)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhCc
Confidence 86644343
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=98.63 E-value=2.2e-06 Score=81.22 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHhcC-CcEEEEecC------------CHHH----HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHH
Q 017492 212 LSWKDVKWLQTITK-LPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 273 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v~------------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i 273 (370)
|..|+++.||+.++ -+|.++... +.++ ++.+.+.|+|+|.+|... ...+++ .......+
T Consensus 212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~ 288 (363)
T d1vyra_ 212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKV 288 (363)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHH
Confidence 57889999999984 457777641 1233 567788999999998532 112222 22334455
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++||++.| +.+++++.++|+-| ||.|++||+++.
T Consensus 289 ~~~~--~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 289 RERF--HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp HHHC--CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHhc--CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHH
Confidence 5555 67887766 56899999999999 899999999985
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=2.3e-06 Score=81.34 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=69.4
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecC----------CH-----HHHHHHHHcCccEEEEccCCccCCCC-ccchHHHHHHH
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVL----------TA-----EDARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEEV 273 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~----------~~-----~~a~~a~~aG~d~I~vs~~gg~~~~~-~~~~~~~l~~i 273 (370)
.|..|+|+.||+.+ +..|+++... .. ..+..+...|++.+.++...-..... -+.. ....+
T Consensus 214 Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~--~~~~i 291 (374)
T d1gwja_ 214 RFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEG--FREQM 291 (374)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTT--HHHHH
T ss_pred hhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHH--HHHHH
Confidence 36788999999998 3556666541 01 22445667899999987532111111 1111 23456
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++||++.|+| +++.+.++|+-| ||.|++||+++.
T Consensus 292 ~~~~--~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 292 RQRF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp HHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHc--CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHH
Confidence 6666 8999999999 789999999998 999999999985
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=98.53 E-value=1.4e-06 Score=82.53 Aligned_cols=100 Identities=15% Similarity=-0.005 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHhcC-CcEEEEecC---------CHHH------HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH
Q 017492 212 LSWKDVKWLQTITK-LPILVKGVL---------TAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v~---------~~~~------a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (370)
|..|+|+.||+.++ .+|+++.+. +.++ +..+...+++.+.++...-...............+++
T Consensus 210 f~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (364)
T d1icpa_ 210 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK 289 (364)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred HHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH
Confidence 57789999999984 567777642 1122 2233345566666543211111011111122345566
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 276 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 276 ~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+ +.|+++.||+ +++++.++|+-| ||.|++||+++.
T Consensus 290 ~~--~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 290 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hc--CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHH
Confidence 66 7899998886 789999999987 999999999985
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.51 E-value=1.6e-06 Score=76.53 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..+.++++++.++.+ .+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.+++++.|
T Consensus 104 v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~i 178 (225)
T d1mzha_ 104 VVEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----PRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp HHHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----SSCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC----CCCCCHHHHHHHHHHhCCCceE
Confidence 445688888877544 35876 44444 5678899999999986422 2235667777777777778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
-++||||+.+|+.+++.+||+.++..+.
T Consensus 179 KasGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 179 KASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred ECcCCCCCHHHHHHHHHhchhheecCcH
Confidence 9999999999999999999998877764
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=7e-07 Score=78.27 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=121.2
Q ss_pred CCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccC
Q 017492 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLG 190 (370)
Q Consensus 112 ~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~ 190 (370)
.+.+++....| .+-+....+.+...++++.+.+.|++.+.||+++|..-.....++..| |. .++..++... .
T Consensus 6 ~~~~~~l~~~~---iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~--p~~~vGaGTV~~~--~ 78 (213)
T d1wbha1 6 TSAESILTTGP---VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PEAIVGAGTVLNP--Q 78 (213)
T ss_dssp SCHHHHHHSCS---EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TTSEEEEESCCSH--H
T ss_pred cCHHHHHHhCC---EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCeeeccccccH--H
Confidence 56777776653 333444678888889999999999999999999987655556666655 32 1222222110 0
Q ss_pred ccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHH
Q 017492 191 KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 270 (370)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l 270 (370)
..+.....|....+ .|.++.+.++..++ .++|++ -|+.|+.++..+.++|++.+.++-... ......+
T Consensus 79 ~~~~a~~aGa~Fiv----SP~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~------~Gg~~~l 146 (213)
T d1wbha1 79 QLAEVTEAGAQFAI----SPGLTEPLLKAATE-GTIPLI-PGISTVSELMLGMDYGLKEFKFFPAEA------NGGVKAL 146 (213)
T ss_dssp HHHHHHHHTCSCEE----ESSCCHHHHHHHHH-SSSCEE-EEESSHHHHHHHHHTTCCEEEETTTTT------TTHHHHH
T ss_pred HHHHHHHCCCcEEE----CCCCCHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEeccchh------cChHHHH
Confidence 00011111222222 24456667776665 578875 889999999999999999999964211 1123455
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
..+..-+ .+++++.+|||.- +++.+++.+|+.++++|+.++
T Consensus 147 kal~~p~-p~~~~~ptGGV~~-~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 147 QAIAGPF-SQVRFCPTGGISP-ANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp HHHHTTC-TTCEEEEBSSCCT-TTHHHHHTSTTBSCEEEGGGS
T ss_pred HHhcCcc-cCCceeeeCCCCH-HHHHHHHhCCCEEEEEChhhC
Confidence 5555444 4799999999975 899999999999999999765
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.50 E-value=5.8e-07 Score=78.78 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=112.4
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...++++.+.+.|++.+.||+++|..-.-...++..+ |. .++..++... .........+....+
T Consensus 16 iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~--p~~~vGaGTV~~~--~~~~~a~~aGa~Fiv 91 (212)
T d1vhca_ 16 IVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PDFLIAAGTVLTA--EQVVLAKSSGADFVV 91 (212)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEESCCSH--HHHHHHHHHTCSEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcC--CCceEeeeecccH--HHHHHHHhhCCcEEE
Confidence 444455677788888888889999999999999987544445555544 32 1222222110 000111111222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.++..++ .++|++ -|++|+.++..|.++|++.+.++-.+. ......+..+..-+ .+++++
T Consensus 92 ----SP~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vK~FPA~~------~gG~~~lkal~~p~-p~~~~~ 158 (212)
T d1vhca_ 92 ----TPGLNPKIVKLCQD-LNFPIT-PGVNNPMAIEIALEMGISAVKFFPAEA------SGGVKMIKALLGPY-AQLQIM 158 (212)
T ss_dssp ----CSSCCHHHHHHHHH-TTCCEE-CEECSHHHHHHHHHTTCCEEEETTTTT------TTHHHHHHHHHTTT-TTCEEE
T ss_pred ----CCCCCHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEEccccc------cchHHHHHHHhccc-cCCeEE
Confidence 24456666666655 488875 889999999999999999999964321 11233455554444 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+|||.. +++.++|++|+.++++|+.++
T Consensus 159 ptGGV~~-~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 159 PTGGIGL-HNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp EBSSCCT-TTHHHHHTSTTBCCEEECGGG
T ss_pred ecCCCCH-HHHHHHHhCCCEEEEEChhhC
Confidence 9999965 899999999999999999876
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=2.2e-06 Score=74.92 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=72.5
Q ss_pred cHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..++++.+++.++. ..+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.+++++.|
T Consensus 104 v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~i 178 (211)
T d1ub3a_ 104 LEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQV 178 (211)
T ss_dssp HHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC----CCCCCHHHHHHHHHHhCCCceE
Confidence 45578888888753 346876 45544 4668899999999986321 2235667777777777778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
-++||||+.+++.+.+.+||+-++..++.
T Consensus 179 KasGGIrt~~~a~~~l~aGa~riGtSs~~ 207 (211)
T d1ub3a_ 179 KAAGGIRDRETALRMLKAGASRLGTSSGV 207 (211)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred ECcCCCCCHHHHHHHHHHhhhHhccCcHH
Confidence 99999999999999999999998876653
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=3.2e-06 Score=75.72 Aligned_cols=95 Identities=23% Similarity=0.184 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
...+.|+.+++.++ +..+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.+++++.
T Consensus 136 ~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~----~~gat~e~V~~m~~~~~~~~g 210 (251)
T d1o0ya_ 136 YVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMG 210 (251)
T ss_dssp HHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCCCC----CCCcCHHHHHHHHHHhCCCce
Confidence 34567888888875 3456876 34443 5668899999999986422 234566667666777777899
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
|-++|||++.+|+.+.+.+||+.++..+.
T Consensus 211 iKasGGIrt~~~a~~~i~aGa~riGtSs~ 239 (251)
T d1o0ya_ 211 VKASGGIRTFEDAVKMIMYGADRIGTSSG 239 (251)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EeccCCcCCHHHHHHHHHHhhHHhCCCcH
Confidence 99999999999999999999998776553
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.38 E-value=6.6e-06 Score=73.39 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+-+.++++++.++|++.|-+-|.. +.+-........++...++.++.+++.|||.+.+|+.+...+|+|+|.||.++
T Consensus 159 vh~~~El~~a~~~~a~iIGINnRn---L~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaL 235 (247)
T d1a53a_ 159 INDENDLDIALRIGARFIGINSRD---LETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSL 235 (247)
T ss_dssp ECSHHHHHHHHHTTCSEEEEESBC---TTTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHH
T ss_pred cCCHHHHHHHHhCCCCeEeeeccC---hhhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 345555555555555555444432 22222334445556666767889999999999999999889999999999999
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
|.
T Consensus 236 mk 237 (247)
T d1a53a_ 236 MR 237 (247)
T ss_dssp HH
T ss_pred cC
Confidence 86
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=4.2e-06 Score=75.10 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=80.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc-------------------------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN------------------------------------- 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~------------------------------------- 254 (370)
..+.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.|+++.
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~ 141 (251)
T d1ka9f_ 62 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVH 141 (251)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEE
Confidence 46678999999999998876 5889999999999999999952
Q ss_pred -CCccC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 255 -HGARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 255 -~gg~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
+|++. .|+ ..+.++.+.++.+.. ++|++++||+++.+|+.+++..|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~ 219 (251)
T d1ka9f_ 142 VAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAE 219 (251)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCC
Confidence 11110 011 123567777777765 7999999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++|+++
T Consensus 220 gviig~al~~g 230 (251)
T d1ka9f_ 220 AALAASVFHFG 230 (251)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhHHHHcC
Confidence 99999998763
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=3.6e-06 Score=75.66 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=78.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Cc-------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA------------------- 257 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg------------------- 257 (370)
.++.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.|+++.. |.
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 62 MLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 46789999999999999986 58899999999999999998520 11
Q ss_pred ----cC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 258 ----RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 258 ----~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
+. .|+ ..+.++.+.++.+.. ++|++++||+++.+|+.+++.+|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~ 219 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGAD 219 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCC
Confidence 00 011 123455666665543 8999999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++|+++
T Consensus 220 gvivgsal~~~ 230 (253)
T d1thfd_ 220 AALAASVFHFR 230 (253)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEchHHHcC
Confidence 99999998763
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=3.5e-06 Score=74.07 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++..+.+.+. +.-|..=...++..++++.++||..|---+.. |+ ..|..+.+.|..|.+.. ++|||+|+||.+
T Consensus 114 tl~Aae~Lv~e-GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~ 188 (251)
T d1xm3a_ 114 TLKASEQLLEE-GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGS 188 (251)
T ss_dssp HHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCS
T ss_pred HHHHHHHHHhC-CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCC
Confidence 44445555443 56666555678899999999999998754321 11 13466778888888875 899999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+.+++++|||+|++-+++-
T Consensus 189 pSdAa~AMElG~daVLvNTAIA 210 (251)
T d1xm3a_ 189 PKDAAYAMELGADGVLLNTAVS 210 (251)
T ss_dssp HHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHccCCEEEechhhh
Confidence 9999999999999999999874
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=5.4e-06 Score=75.04 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEccC---------------Cc---------cC-
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNH---------------GA---------RQ- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~~---------------gg---------~~- 259 (370)
..++.++++|+..+.|+++-+..++ +.++.+.++|+|++++-.- |= +.
T Consensus 78 ~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~ 157 (271)
T d1ujpa_ 78 GALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTD 157 (271)
T ss_dssp HHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCH
T ss_pred hHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcch
Confidence 3677899999989999998876433 3478899999999998321 00 00
Q ss_pred ------------------CC--Ccc------chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------------------~~--~~~------~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.. +|. ...+.+.++++. .++||++--||++++|+.++ .|||+|.+||+++
T Consensus 158 eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~--t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV 233 (271)
T d1ujpa_ 158 ARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVAVGFGVSGKATAAQA--AVADGVVVGSALV 233 (271)
T ss_dssp HHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHH
T ss_pred HHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhcc--ccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHH
Confidence 00 111 112345555554 38999999999999998653 5999999999999
Q ss_pred HHHHh
Q 017492 314 YSLAA 318 (370)
Q Consensus 314 ~~~~~ 318 (370)
..+..
T Consensus 234 ~~i~e 238 (271)
T d1ujpa_ 234 RALEE 238 (271)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 86543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.22 E-value=6.9e-06 Score=73.74 Aligned_cols=101 Identities=29% Similarity=0.443 Sum_probs=80.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc-------------------------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN------------------------------------- 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~------------------------------------- 254 (370)
.++.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.|++..
T Consensus 64 ~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~ 143 (252)
T d1h5ya_ 64 FIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 143 (252)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEE
T ss_pred HHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEE
Confidence 56779999999999999886 5789999999999999999941
Q ss_pred -CCccC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 255 -HGARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 255 -~gg~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
||++. .++ ..+.++.+.++.+.. ++|++++||+++.+|+.++..+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~ 221 (252)
T d1h5ya_ 144 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGAD 221 (252)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred EeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCC
Confidence 11110 011 123466777777665 7999999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++|+++
T Consensus 222 gv~~gs~l~~~ 232 (252)
T d1h5ya_ 222 AVLAASLFHFR 232 (252)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhhHHHcC
Confidence 99999999864
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.21 E-value=3.3e-05 Score=73.20 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=63.1
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecC----------CH-HH----H------HHHHHcCccEEEEccCCccCC---C---C
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVL----------TA-ED----A------RIAVQAGAAGIIVSNHGARQL---D---Y 262 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~----------~~-~~----a------~~a~~aG~d~I~vs~~gg~~~---~---~ 262 (370)
.|..++|+.||+.++ -+++++... .. +. + ..+...+++++.++....... . .
T Consensus 210 Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 289 (380)
T d1q45a_ 210 RFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQ 289 (380)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC------------
T ss_pred hhHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCccccccccccccc
Confidence 357889999999983 334444321 11 11 1 112236788888875322110 0 0
Q ss_pred ccc--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 263 VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 263 ~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++. .......+++.+ ++||+++||+ +++++.++|+.| ||.|++||+|+.
T Consensus 290 ~~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 290 GSDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp ---CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CchhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHH
Confidence 111 122345555555 7999999998 689999999998 999999999985
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=2.9e-05 Score=69.31 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=48.6
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.+++.++.++|++.|-|-|..=+.+.....+...|.++....+.++.+++.+||.+.+|+ +.+..|+|+|.||.++|.
T Consensus 163 ~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv-~~l~~g~davLIGesLm~ 241 (254)
T d1vc4a_ 163 TERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEEL-KALEGLFDAVLIGTSLMR 241 (254)
T ss_dssp SHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHH-HTTTTTCSEEEECHHHHT
T ss_pred cHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHH-HHHHcCCCEEEEChhhcC
Confidence 3444444444444444443322122223333444454444443346789999999999997 556889999999999986
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.16 E-value=1.7e-05 Score=75.75 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 273 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 273 i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+++.+ ++|||+.|||.+..++.+.+..| ||.|++||++|.
T Consensus 312 ik~~~--~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 312 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 45555 89999999999988988888765 999999999985
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.14 E-value=9e-06 Score=75.42 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHHH
Q 017492 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 315 (370)
Q Consensus 265 ~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 315 (370)
+.++.+.++.+.+ ++|||++||+++.+|+.+++.. |+++|.+|+.|.+.
T Consensus 251 ~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~ 300 (323)
T d1jvna1 251 YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300 (323)
T ss_dssp CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred cchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcC
Confidence 4667888887776 8999999999999999999875 69999999999863
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.11 E-value=1.3e-05 Score=71.18 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=77.9
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------------------------Ccc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------------------------GAR 258 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------------------------gg~ 258 (370)
..+.++.+.+.+.+|+.+.+ +.+.++++.+.+.|++.|+++.. |..
T Consensus 62 ~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~ 141 (239)
T d1vzwa1 62 NRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 141 (239)
T ss_dssp CHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred hHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccce
Confidence 56788999999999999986 58899999999999999999521 100
Q ss_pred C--------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---CCCEEE
Q 017492 259 Q--------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIF 307 (370)
Q Consensus 259 ~--------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---GAd~V~ 307 (370)
. .++ ..+.++.+..+.+.. ++|++++|||++.+|+.+.-.+ |+++|.
T Consensus 142 ~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvi 219 (239)
T d1vzwa1 142 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAI 219 (239)
T ss_dssp CCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred eeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEee
Confidence 0 011 123556777776655 7999999999999999876554 999999
Q ss_pred EcHHHHHH
Q 017492 308 IGRPVVYS 315 (370)
Q Consensus 308 igr~~l~~ 315 (370)
+|++|+++
T Consensus 220 vg~al~~g 227 (239)
T d1vzwa1 220 VGKALYAK 227 (239)
T ss_dssp ECHHHHTT
T ss_pred EhHHHHCC
Confidence 99998763
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.06 E-value=3.1e-05 Score=68.49 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHHhc-CCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH-ccCCCc
Q 017492 214 WKDVKWLQTIT-KLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-TQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~-~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~-~~~~ip 282 (370)
|+.++++.+.. ..+..+|.+ ++.++ ++.+.++|+|+|..|..-+. .+ .+...+..+.+. .+.++.
T Consensus 119 ~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~~---~g-at~~~~~~l~~~~~~~~vg 194 (234)
T d1n7ka_ 119 YREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYT---KG-GDPVTVFRLASLAKPLGMG 194 (234)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSC---CC-CSHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeecccccC---CC-CCHHHHHHHHHHhcCCCCc
Confidence 44444444332 223457876 45444 45677999999998753111 11 122222222222 234799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
|-++||||+.+|+.+++.+||+-++..+.
T Consensus 195 IKasGGIrt~~~a~~~i~aGa~rIGtSs~ 223 (234)
T d1n7ka_ 195 VKASGGIRSGIDAVLAVGAGADIIGTSSA 223 (234)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred EEeeCCcCCHHHHHHHHHccCceeecchH
Confidence 99999999999999999999998766553
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.06 E-value=1.6e-05 Score=70.31 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=65.8
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGA 303 (370)
+.-|..=...++..++++.+.|+..+.--+.. |+ ..|....+.+..+.+.. ++|||+|+||.++.|+.+++++||
T Consensus 127 gF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGs--g~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~ 202 (243)
T d1wv2a_ 127 GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGC 202 (243)
T ss_dssp TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTC
T ss_pred ceEEEeccCCCHHHHhHHHHcCceeeeeccccccc--ccccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccC
Confidence 44444444567888999999999998764431 21 12345556777777655 899999999999999999999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|.+.+++..
T Consensus 203 dgVLvnsaIa~ 213 (243)
T d1wv2a_ 203 EAVLMNTAIAH 213 (243)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEechHhhc
Confidence 99999998754
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.99 E-value=9.7e-05 Score=64.83 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCc-c--------CCCCccchHHHHHHHHH
Q 017492 214 WKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGA-R--------QLDYVPATIMALEEVVK 275 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg-~--------~~~~~~~~~~~l~~i~~ 275 (370)
.++++.+++.++ +..+|.+ ++.++ ++.+.++|+|+|..|+.-+ . .....+.....+.++.+
T Consensus 101 ~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~ 179 (226)
T d1vcva1 101 RRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIK 179 (226)
T ss_dssp HHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHH
Confidence 345777877764 4457876 34433 4567799999999986411 1 01112333445555555
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHh-------CCCEEEEcH
Q 017492 276 ATQGRIPVFLDGGVRRGTDVFKALAL-------GASGIFIGR 310 (370)
Q Consensus 276 ~~~~~ipvi~~GGI~~~~dv~kalal-------GAd~V~igr 310 (370)
..+.++.|-++||||+.+++.+.+.+ ||.-++..+
T Consensus 180 ~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 180 EKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 55668999999999999999999987 887766554
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.95 E-value=5.6e-05 Score=65.43 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 017492 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 305 (370)
Q Consensus 228 v~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~ 305 (370)
++.--+-+.+++..+.+.|+|++.++--.-+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~g 177 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDG 177 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSE
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 33334578899999999999999997533221 223345778888888776 8999999999 558899999999999
Q ss_pred EEEcHHHHH
Q 017492 306 IFIGRPVVY 314 (370)
Q Consensus 306 V~igr~~l~ 314 (370)
|.+.+.++.
T Consensus 178 vAvis~I~~ 186 (206)
T d1xi3a_ 178 IAVISAVMG 186 (206)
T ss_dssp EEESHHHHT
T ss_pred EEEhHHHHC
Confidence 999999864
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.0001 Score=65.60 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
....++...++.++.+++.+||++.+|+.. +..|+|+|.||..+|.
T Consensus 196 ~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~ 241 (254)
T d1piia2 196 NRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSALMA 241 (254)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHT
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhC
Confidence 334444555666788999999999999855 6889999999999986
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=2.1e-05 Score=70.09 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=73.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC--C--------------c------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--G--------------A------------------ 257 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~--g--------------g------------------ 257 (370)
+++++..+++.+++||..|- +.++.....+..+|||+|.+--. . |
T Consensus 89 s~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~ 168 (251)
T d1i4na_ 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHT
T ss_pred CHHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhc
Confidence 56788999999999999997 47788888888899999887421 0 0
Q ss_pred -----------cCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 258 -----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 258 -----------~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
|.+..-........++...++.+..+++.+||++.+|+. .+..|+|+|.||+.+|.+
T Consensus 169 ~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~-~l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 169 VIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELK-DLRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp TCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHH-HHTTTCSEEEECHHHHHC
T ss_pred ccccceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHH-HHHhCCCEEEEChHHhCC
Confidence 001111112223344445556678899999999999985 567899999999999963
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.88 E-value=2.8e-05 Score=67.94 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=111.2
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...++++.+.+.|++.+.||++.|..-.....++..| |. .++..++... .........+....+
T Consensus 19 iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~--p~~~vGaGTV~~~--~~~~~a~~aGa~Fiv 94 (216)
T d1mxsa_ 19 ILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQR--PELCVGAGTVLDR--SMFAAVEAAGAQFVV 94 (216)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHC--TTSEEEEECCCSH--HHHHHHHHHTCSSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhC--CCcceeeeeeecH--HHHHHHHhCCCCEEE
Confidence 334455677888888999999999999999999987555556666655 32 1222222110 000011111222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.+++-++ .++|++ -|+.|+.++..+.++|++.+.++-.+- ......+..+..-+ .+++++
T Consensus 95 ----sP~~~~~v~~~a~~-~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~------~~g~~~ikal~~p~-p~~~fi 161 (216)
T d1mxsa_ 95 ----TPGITEDILEAGVD-SEIPLL-PGISTPSEIMMGYALGYRRFKLFPAEI------SGGVAAIKAFGGPF-GDIRFC 161 (216)
T ss_dssp ----CSSCCHHHHHHHHH-CSSCEE-CEECSHHHHHHHHTTTCCEEEETTHHH------HTHHHHHHHHHTTT-TTCEEE
T ss_pred ----CCCCcHHHHHHHHh-cCCCcc-CCcCCHHHHHHHHHCCCCEEEeccccc------cccHHHHHHHhccc-ccCcee
Confidence 34556677776554 588875 889999999999999999999963110 01223444444434 479999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+|||.. +++..+|++|+-+++.|+.++
T Consensus 162 ptGGV~~-~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 162 PTGGVNP-ANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp EBSSCCT-TTHHHHHHSTTBCCEEECTTS
T ss_pred ccCCCCH-HHHHHHHhcCCeEEEEccccC
Confidence 9999975 899999999988888787654
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.76 E-value=0.00013 Score=63.48 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=74.7
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------CCcc------------CC----------
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------HGAR------------QL---------- 260 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~gg~------------~~---------- 260 (370)
+.+.++++.+.+++||..|-. ...-+++.+...|+|+|.=|- |-.+ .+
T Consensus 46 dp~~i~ei~~~vsipvmak~righ~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~Eg 125 (254)
T d1znna1 46 DPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEG 125 (254)
T ss_dssp CHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcccccccccCCCchHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHH
Confidence 567899999999999999974 677889999999999998762 2111 00
Q ss_pred --------CCc------------------------------------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHH
Q 017492 261 --------DYV------------------------------------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 261 --------~~~------------------------------------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ 296 (370)
..+ ..+.+.+.++.+.-+-.+|++++|||.++.|+.
T Consensus 126 AamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa 205 (254)
T d1znna1 126 ASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAA 205 (254)
T ss_dssp CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHH
T ss_pred HHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHH
Confidence 000 012233344443322368999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHH
Q 017492 297 KALALGASGIFIGRPVVY 314 (370)
Q Consensus 297 kalalGAd~V~igr~~l~ 314 (370)
.++.+|+|+|++|+.+..
T Consensus 206 ~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 206 LMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp HHHHTTCSEEEECGGGGG
T ss_pred HHHHcCCCEEEEcchhhc
Confidence 999999999999998754
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=8.4e-05 Score=65.88 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--------------------------------CCccC--
Q 017492 215 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------------------------HGARQ-- 259 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--------------------------------~gg~~-- 259 (370)
..++.+++ ...|+.+.+ +.+.++++.+.+.|+|.|++.. ||++.
T Consensus 64 ~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~ 142 (241)
T d1qo2a_ 64 PVLEKLSE-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEE 142 (241)
T ss_dssp HHHHHGGG-GGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCS
T ss_pred hheehhcc-cccchhhhhhhhhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCcccce
Confidence 34455554 457998876 6799999999999999998852 11110
Q ss_pred -C------------------------C--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC------CCEE
Q 017492 260 -L------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGI 306 (370)
Q Consensus 260 -~------------------------~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG------Ad~V 306 (370)
. + ...+.++.+..+.+.. ++|++++||+++.+|+.++..+| +++|
T Consensus 143 ~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gv 220 (241)
T d1qo2a_ 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGV 220 (241)
T ss_dssp CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred eeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeE
Confidence 0 0 1123567777777665 89999999999999999998766 7899
Q ss_pred EEcHHHHHH
Q 017492 307 FIGRPVVYS 315 (370)
Q Consensus 307 ~igr~~l~~ 315 (370)
.+|++|+++
T Consensus 221 ivG~al~~g 229 (241)
T d1qo2a_ 221 IVGRAFLEG 229 (241)
T ss_dssp EECHHHHTT
T ss_pred EEHHHHHCC
Confidence 999999753
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.72 E-value=0.00061 Score=59.28 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=88.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
..|...+.+.++++++.|++.+=+.+ |. .|. | +-
T Consensus 10 ~~d~~~l~~~i~~~~~~g~d~iHiDimDg------------~Fv-p--------------------------------n~ 44 (217)
T d2flia1 10 AADYANFASELARIEETDAEYVHIDIMDG------------QFV-P--------------------------------NI 44 (217)
T ss_dssp GSCGGGHHHHHHHHHHTTCCEEEEEEEBS------------SSS-S--------------------------------CB
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEEcccC------------cCC-C--------------------------------cc
Confidence 45677778889999999998764421 10 010 1 11
Q ss_pred CccHHHHHHHHHhcCCcEEEEec-CCHH-HHHHHHHcCccEEEEccC---------------Cc---------cC-----
Q 017492 211 SLSWKDVKWLQTITKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v-~~~~-~a~~a~~aG~d~I~vs~~---------------gg---------~~----- 259 (370)
.+..+.++++++.+++|+=+-+. .+++ ......++|+|.|.+.-. |- +.
T Consensus 45 s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~ 124 (217)
T d2flia1 45 SFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALE 124 (217)
T ss_dssp CBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGG
T ss_pred ccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence 23556788888888888777653 4443 467778888888888411 10 00
Q ss_pred -----CC-----------C----ccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD-----------Y----VPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~-----------~----~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| + -+..++-+.++++.. ..+++|.+||||+. +.+.+...+|||.+.+|++++
T Consensus 125 ~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 125 PLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN-KTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp GGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHH
T ss_pred hHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCH-HHHHHHHHCCCCEEEEchHHh
Confidence 00 1 133555555565543 23689999999975 678888899999999998755
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00037 Score=59.30 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.+.+..+.+.|++.+.+......+..+.......+..+++..+...++..+||++ ++++.+++..|||.+.+||+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~ 193 (213)
T d1q6oa_ 115 WTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIR 193 (213)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhc
Confidence 567888889999999887743210011112223344555555444578999999985 6899999999999999999986
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
.+ +-..+.++.++++++.
T Consensus 194 ~a------~dp~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 194 DA------ASPVEAARQFKRSIAE 211 (213)
T ss_dssp TS------SCHHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHH
Confidence 42 1223455666666543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.70 E-value=0.00016 Score=63.47 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=73.6
Q ss_pred HHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 218 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++|+..+..++.--+-+.++++.+.+.|+|+|.++.-..+. .+..+ .....+..+.+. ..++||++-||| +.++
T Consensus 107 ~~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~-~~~~Pv~AiGGI-~~~n 184 (226)
T d2tpsa_ 107 KEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVGIGGI-TIDN 184 (226)
T ss_dssp HHHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEEESSC-CTTT
T ss_pred hhhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHh-cCCCCEEEecCC-CHHH
Confidence 334444443344333578999999999999999997643322 12222 234555555442 137999999999 7799
Q ss_pred HHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
+.+++.+||++|.+.+.++.+ .. ....++.+++.++.
T Consensus 185 i~~l~~~Ga~giAvis~I~~a---~d---p~~~~~~~~~~~~~ 221 (226)
T d2tpsa_ 185 AAPVIQAGADGVSMISAISQA---ED---PESAARKFREEIQT 221 (226)
T ss_dssp SHHHHHTTCSEEEESHHHHTS---SC---HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEhHHhhcC---CC---HHHHHHHHHHHHHH
Confidence 999999999999999988742 12 23344555555443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=7.7e-05 Score=66.49 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=59.9
Q ss_pred cHHHHHHHHHhc-CCcEEEEecC------CHHH---H-HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH--ccC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVL------TAED---A-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQG 279 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~------~~~~---a-~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~ 279 (370)
..+.++.+++.+ ..++.+|.+. +.+. + +.+.++|+|+|..|+.-+. ....+.....+.++.+. .+.
T Consensus 118 v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~-~gat~~~v~~m~~~i~~~~~~~ 196 (250)
T d1p1xa_ 118 GFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVA-VNATPESARIMMEVIRDMGVEK 196 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCC-CCCCHHHHHHHHHHhhhhccCc
Confidence 445677777765 3556778762 2332 2 4568999999999864221 11122233333333322 134
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
++.|-++||||+.+|+.+++.+||+.+
T Consensus 197 ~vgIKasGGIrt~~~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 197 TVGFKPAGGVRTAEDAQKYLAIADELF 223 (250)
T ss_dssp TCEEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred ceeeEecCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999998753
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.44 E-value=0.001 Score=58.01 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHH----HHHHHHccCCCcEEEecCCCCHHHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l----~~i~~~~~~~ipvi~~GGI~~~~dv~ka 298 (370)
++.+++ -+.+.+++..+.+.+.+.|..-.. .|+.....+...+.+ ..+.+ ...++||+..|||.++.|+..+
T Consensus 114 gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~-~~~~i~vlygGgV~~~n~~~~~ 191 (226)
T d1w0ma_ 114 GLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSR-HFPEVSVITGAGIESGDDVAAA 191 (226)
T ss_dssp TCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHH-HCTTSEEEEESSCCSHHHHHHH
T ss_pred CCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhc-cCCCceEEEecCcCChHHHHHH
Confidence 554444 346788889999999998876432 222111112222222 22222 2358999999999999999999
Q ss_pred HHhCCCEEEEcHHHHH
Q 017492 299 LALGASGIFIGRPVVY 314 (370)
Q Consensus 299 lalGAd~V~igr~~l~ 314 (370)
+..|+|+|.+|++++.
T Consensus 192 ~~~g~dGvLVGsA~l~ 207 (226)
T d1w0ma_ 192 LRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHTTCSEEEECHHHHT
T ss_pred hcCCCCEEEechheec
Confidence 9999999999999985
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.42 E-value=0.0025 Score=55.32 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+..++-+.++++.. .+++|.+||||+. +.+.+...+|||.+.+||.++
T Consensus 153 ~~~l~kI~~l~~~~-~~~~I~VDGGIn~-~~i~~l~~aGad~~V~GS~if 200 (220)
T d1h1ya_ 153 PEMMEKVRALRKKY-PSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIF 200 (220)
T ss_dssp GGGHHHHHHHHHHC-TTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHH
T ss_pred hhhhHHHHHHHhcC-CCceEEEEecCCH-HHHHHHHHCCCCEEEECHHHH
Confidence 44566677776643 4799999999988 688888899999999999854
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.38 E-value=0.0069 Score=52.35 Aligned_cols=99 Identities=21% Similarity=0.163 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~ 292 (370)
.++.+.+. ++++-+=.+.+.+.+..|.++|+++|... -||-.+.|......+.++.+.+ +.+..|++ +.+|+.
T Consensus 95 ai~~L~~~-Gi~~n~Tavfs~~Qa~~Aa~aga~yispy--~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~ 170 (218)
T d1vpxa_ 95 AVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHP 170 (218)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSH
T ss_pred HHHHHHHc-CCceeeEEecCHHHHHHHHhcCCCEEEee--ecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCCH
Confidence 45555543 78998888999999999999999998763 3443344445555565555443 34677777 669999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 293 TDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
.++.+++..|||.+-+.-.++..+..
T Consensus 171 ~~v~~a~~~G~d~iTip~~v~~~l~~ 196 (218)
T d1vpxa_ 171 MHVVEAALMGVDIVTMPFAVLEKLFK 196 (218)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEcCHHHHHHHHC
Confidence 99999999999999999999887653
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.37 E-value=0.001 Score=55.30 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=67.5
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+++... .+| .-.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+..++.+-++|||. .+
T Consensus 68 ~~~~~~~~~~~~~~I-eVEv~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI~-~~ 135 (167)
T d1qapa1 68 QAVEKAFWLHPDVPV-EVEVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNVT-AE 135 (167)
T ss_dssp HHHHHHHHHSTTSCE-EEEESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCSC-HH
T ss_pred hhhHHHhhcCCCceE-EEecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCCC-HH
Confidence 45666666543 444 35678999999999999999999884 2345556666666788999999994 58
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q 017492 294 DVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l 313 (370)
.+.++...|+|.+.+|.+..
T Consensus 136 ni~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 136 TLREFAETGVDFISVGALTK 155 (167)
T ss_dssp HHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHHcCCCEEECCcccC
Confidence 99999889999999998754
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.30 E-value=0.0012 Score=57.41 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=59.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEcc-----CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~-----~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal 299 (370)
++.+++. +....+++.+.+.+.+.|-.-. +|.+....-+..+....+..+....++||+..|||.++.|+..++
T Consensus 116 gl~~i~c-v~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~ 194 (224)
T d1hg3a_ 116 GLMTMVC-SNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAI 194 (224)
T ss_dssp TCEEEEE-ESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred CCceeec-hhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHH
Confidence 5554433 4567778888888888776533 221111111222222222223345689999999999999999999
Q ss_pred HhCCCEEEEcHHHHH
Q 017492 300 ALGASGIFIGRPVVY 314 (370)
Q Consensus 300 alGAd~V~igr~~l~ 314 (370)
.+|+|+|.+|++++.
T Consensus 195 ~~g~dGvLVGsAsl~ 209 (224)
T d1hg3a_ 195 ELGTVGVLLASGVTK 209 (224)
T ss_dssp HTTCSEEEESHHHHT
T ss_pred hCCCCEEEEcceeec
Confidence 999999999999985
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.00071 Score=56.50 Aligned_cols=90 Identities=9% Similarity=-0.000 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
+.++.+++..+..-+.-.+.+.++++.+.++|+|.|.+.|. .|..+....+..+.....+.+-++||| +.+.
T Consensus 68 ~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaSGgI-~~~n 139 (169)
T d1qpoa1 68 DALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESSGGL-SLQT 139 (169)
T ss_dssp HHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEESSC-CTTT
T ss_pred hhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEeCCC-CHHH
Confidence 35777777664333445578999999999999999999884 233333222233333457889999999 5688
Q ss_pred HHHHHHhCCCEEEEcHHH
Q 017492 295 VFKALALGASGIFIGRPV 312 (370)
Q Consensus 295 v~kalalGAd~V~igr~~ 312 (370)
+.++...|+|.+.+|.+.
T Consensus 140 i~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 140 AATYAETGVDYLAVGALT 157 (169)
T ss_dssp HHHHHHTTCSEEECGGGT
T ss_pred HHHHHHcCCCEEECCccc
Confidence 999989999999999754
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.16 E-value=0.0012 Score=58.84 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHhcCCcEEEEecC------CHHH---HH-HHHHcCccEEEEccCCccCCCCccchHHHHHHHHH-H------ccC
Q 017492 217 VKWLQTITKLPILVKGVL------TAED---AR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-A------TQG 279 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~------~~~~---a~-~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~-~------~~~ 279 (370)
+..+++... +..+|.|. +.+. +. .+.++|+|+|..|..-+. ....+.....+.++.+ . .++
T Consensus 126 i~~~~~~~~-~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~~-~gat~~~v~~m~~~v~e~~~~~~~~g~ 203 (256)
T d2a4aa1 126 TQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQ-INATPSSVEYIIKAIKEYIKNNPEKNN 203 (256)
T ss_dssp HHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHhhcc-CCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHHHhccCCCC-CCCCHHHHHHHHHHHHHHHhhccccCC
Confidence 444444432 34468762 2232 33 346899999999863111 1112333333333322 1 146
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
++.|-++||||+.+++.+++.+|++.+
T Consensus 204 ~~gVKASGGIrt~~~a~~~i~~g~~~l 230 (256)
T d2a4aa1 204 KIGLKVSGGISDLNTASHYILLARRFL 230 (256)
T ss_dssp CCEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999998854
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.06 E-value=0.013 Score=50.94 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHH-HHHHHHHcCccEEEEccC-----------------Cc---------cC----
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAE-DARIAVQAGAAGIIVSNH-----------------GA---------RQ---- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~-~a~~a~~aG~d~I~vs~~-----------------gg---------~~---- 259 (370)
+..+.++++++.+++|+=+=+ +.+++ ......++|+|.|++.-+ |- +.
T Consensus 55 ~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l 134 (230)
T d1rpxa_ 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 134 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGG
T ss_pred cChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Confidence 455678888877777766654 34553 466778888888887521 00 00
Q ss_pred ------CC-----------Cc----cchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------~~-----------~~----~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++.. ..++.|.+||||.. +.+.+...+|||.+.+|+.++
T Consensus 135 ~~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if 211 (230)
T d1rpxa_ 135 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 211 (230)
T ss_dssp TTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHH
T ss_pred HHHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHH
Confidence 00 11 23455555554433 23788999999987 678888899999999998765
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.99 E-value=0.0026 Score=56.27 Aligned_cols=76 Identities=26% Similarity=0.290 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+...+.|+|.+.+..-.+. ..........+.++.+.. .+|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 35688888999999987542221 122345567788888776 89999999999999999999999999999997654
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0026 Score=56.31 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=58.4
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.|.+-.--+ .........+.+.++.+.. .+|+...||||+-+|+.+.+.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 567888899999998854221 1112234556677777654 89999999999999999999999999999997764
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0058 Score=52.94 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~ 291 (370)
+.++++.+ -++++-+=.+.+...+..|.++|+++|.. .-||-.+.|....+.+.++.+.+ +.+..|++ +.+|+
T Consensus 94 ~ai~~L~~-~Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~ 169 (220)
T d1l6wa_ 94 AAIKMLKA-EGIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKT 169 (220)
T ss_dssp HHHHHHHH-HTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSS
T ss_pred chhhhhhh-cccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCC
Confidence 34555543 38899888899999999999999999877 33554445556666666665543 34666666 67999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
..++.++..+|||.+-+.-.++..+.
T Consensus 170 ~~~v~~~~~~G~d~iTip~~v~~~l~ 195 (220)
T d1l6wa_ 170 PRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHh
Confidence 99999999999999999999988754
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.84 E-value=0.014 Score=50.43 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 265 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 265 ~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
..++-+.++++.. ..++.|.+||||.. +.+.+...+|||.+.+|++++
T Consensus 153 ~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if 203 (221)
T d1tqja_ 153 EVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVF 203 (221)
T ss_dssp GGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHH
T ss_pred hhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHh
Confidence 3445555554443 24688999999986 577788889999999998764
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.0035 Score=55.31 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=57.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..-.+. ........+.+.++.+.+ .+|+.++||||+.+++.+.+.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 5578888999999988642221 112234556677777655 79999999999999999999999999999997653
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=96.70 E-value=0.007 Score=51.99 Aligned_cols=98 Identities=22% Similarity=0.181 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~ 292 (370)
.++.+++ .++++-+=.+.+...+..|.++|+++|.. .-||-.+.+......+.++.+.+ +.+..|++ +.+|+.
T Consensus 102 a~~~L~~-~Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~ 177 (211)
T d1wx0a1 102 ACKRLSA-EGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHP 177 (211)
T ss_dssp HHHHHHH-TTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSH
T ss_pred HHHHHhh-cCCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCH
Confidence 3455544 37899998899999999999999999877 33554445555666666665544 34677777 559999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
.++.+++.+|+|.+-+.-+++..+.
T Consensus 178 ~~~~~~~~~G~d~vTi~~~v~~~l~ 202 (211)
T d1wx0a1 178 RHVTEAALLGADIATMPHAVFKQLL 202 (211)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCHHHHHHHh
Confidence 9999999999999999988876543
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.67 E-value=0.0054 Score=52.32 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCcEEE--EecC---CH-HHHHHHHHcCccEEEEccCCccC----------------CC----------
Q 017492 214 WKDVKWLQTITKLPILV--KGVL---TA-EDARIAVQAGAAGIIVSNHGARQ----------------LD---------- 261 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~v--K~v~---~~-~~a~~a~~aG~d~I~vs~~gg~~----------------~~---------- 261 (370)
.+.++++++..+.||++ |..- +. ..++.+.++|+|.++|...+|.. +.
T Consensus 40 ~~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (206)
T d2czda1 40 VDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINP 119 (206)
T ss_dssp TTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGG
T ss_pred HHHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccH
Confidence 34678888777888765 5542 22 34677789999999997655520 00
Q ss_pred ------------------CccchHHHHHHHHHHccCCCcEEEecCCC-CHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 262 ------------------YVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 262 ------------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~-~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.+....+.+..+++..+....+++ .||+ .+.+..+++..|||.+.+||++..+ +
T Consensus 120 ~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i~~-pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a------~ 192 (206)
T d2czda1 120 LTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILA-PGIGAQGGKAKDAVKAGADYIIVGRAIYNA------P 192 (206)
T ss_dssp GHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEE-CCCCSSTTHHHHHHHHTCSEEEECHHHHTS------S
T ss_pred HHHHHHHHHHhcccccccccccCchhhhhhhhhhcccceEEC-CCccccCCCHHHHHHhCCCEEEEChhhccC------C
Confidence 001111233344444433455555 4554 3457778899999999999998742 1
Q ss_pred HHHHHHHHHHHHHH
Q 017492 323 GVRRVLEMLREEFE 336 (370)
Q Consensus 323 ~v~~~l~~l~~el~ 336 (370)
-..+.++.++++|+
T Consensus 193 dP~~aa~~i~~~ik 206 (206)
T d2czda1 193 NPREAAKAIYDEIR 206 (206)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhC
Confidence 22345666666653
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0022 Score=53.39 Aligned_cols=89 Identities=25% Similarity=0.233 Sum_probs=64.7
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+++..+ .+|.| .+.+.+++..+.++|+|.|.+.|- .|..+..+.+..+....++.+-++|||.-
T Consensus 66 ~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~-------~pe~~k~~~~~lk~~~~~i~lEaSGGI~~- 136 (170)
T d1o4ua1 66 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL-------SPEEVKDISRRIKDINPNVIVEVSGGITE- 136 (170)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CHHHHHHHHHHHHHHCTTSEEEEEECCCT-
T ss_pred HHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCc-------ChhhHhHHHHHHHhhCCcEEEEEECCCCH-
Confidence 35777777653 44544 478899999999999999999873 23333333333333456899999999955
Q ss_pred HHHHHHHHhCCCEEEEcHHH
Q 017492 293 TDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~ 312 (370)
+++.++...|+|.+.+|.+.
T Consensus 137 ~ni~~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 137 ENVSLYDFETVDVISSSRLT 156 (170)
T ss_dssp TTGGGGCCTTCCEEEEGGGT
T ss_pred HHHHHHHHcCCCEEEcCccc
Confidence 77877777999999999764
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.48 E-value=0.0037 Score=54.68 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.|+...+.|+|.|.+..-.+.. ........+..+.+.+ .+|+.+.|||++-+|+.+.+.+||+.|.+++..+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~ 107 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 107 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhh
Confidence 356778889999999986422211 1234556778887776 7999999999999999999999999999999764
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0076 Score=51.83 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=63.1
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+...+.|+.++++. ++-|.+..+.+.++++.+.++|+++++--+ ...+.+..+.+ . ++|++- |+
T Consensus 51 p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~-~--~i~~iP--Gv 115 (213)
T d1wbha1 51 ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKAATE-G--TIPLIP--GI 115 (213)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHHHHH-S--SSCEEE--EE
T ss_pred hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC----------CCHHHHHHHHh-c--CCCccC--Cc
Confidence 34567899999987 677888888999999999999999996422 12234443333 2 566665 78
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 017492 290 RRGTDVFKALALGASGIFI 308 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~i 308 (370)
.|+.++..|+.+||+.|=+
T Consensus 116 ~TpsEi~~A~~~G~~~vKl 134 (213)
T d1wbha1 116 STVSELMLGMDYGLKEFKF 134 (213)
T ss_dssp SSHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHCCCCEEEe
Confidence 9999999999999999854
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.31 E-value=0.0064 Score=52.29 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
...+.|++++++. ++-|.+..+++.++++.+.++|+++++--+ ...+.+..+.+ . ++|++ =|+.
T Consensus 51 ~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~-~--~i~~i--PGv~ 115 (212)
T d1vhca_ 51 AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD-L--NFPIT--PGVN 115 (212)
T ss_dssp THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-T--TCCEE--CEEC
T ss_pred hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC----------CCHHHHHHHHh-c--CCCcc--CCcC
Confidence 4567899998887 677888889999999999999999985311 12234443333 2 56655 4799
Q ss_pred CHHHHHHHHHhCCCEEEE
Q 017492 291 RGTDVFKALALGASGIFI 308 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~i 308 (370)
|+.++..|+.+||+.|=+
T Consensus 116 TpsEi~~A~~~G~~~vK~ 133 (212)
T d1vhca_ 116 NPMAIEIALEMGISAVKF 133 (212)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998854
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.27 E-value=0.011 Score=51.94 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++|+.+.. +.++++++.+.+.|+|+++|+.
T Consensus 179 ~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 221 (248)
T d1geqa_ 179 AYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS 221 (248)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECH
Confidence 35579999999999999984 6899999999999999999953
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.21 E-value=0.018 Score=49.65 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcEEEEe--cCCHHHHHHHHH-cCccEEEEcc-C-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 216 DVKWLQTITKLPILVKG--VLTAEDARIAVQ-AGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~--v~~~~~a~~a~~-aG~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.++++++. +..+.+-. ..+.+......+ ..+|.|.+-. + |..+....+..++-+.++++.. .++.|.+||||.
T Consensus 103 ~i~~i~~~-g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~-~~~~I~VDGGIn 180 (221)
T d1tqxa_ 103 LAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY-KNLNIQVDGGLN 180 (221)
T ss_dssp HHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCC
T ss_pred HHHHHHhc-CCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhc-CCcceEEEcccC
Confidence 35555554 33333333 244566666664 4689887643 2 3223334456777777776653 478999999996
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
. +.+.+...+|||.+.+||.++. .+...+.++.|++.+++
T Consensus 181 ~-~~i~~l~~aGad~iV~GS~if~------~~d~~~~i~~Lr~~i~k 220 (221)
T d1tqxa_ 181 I-ETTEISASHGANIIVAGTSIFN------AEDPKYVIDTMRVSVQK 220 (221)
T ss_dssp H-HHHHHHHHHTCCEEEESHHHHT------CSSHHHHHHHHHHHHHH
T ss_pred H-HhHHHHHHcCCCEEEEChHHHC------CCCHHHHHHHHHHHHhh
Confidence 6 7788888999999999997643 12234456666666553
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.21 E-value=0.094 Score=45.75 Aligned_cols=82 Identities=33% Similarity=0.522 Sum_probs=55.1
Q ss_pred HhcCCcEEEEec---------CCHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 222 TITKLPILVKGV---------LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 222 ~~~~~Pv~vK~v---------~~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
..+++|+++-.. .+++ -++.+.+.|+|.|.+-- +...+...++.+.. ..+||+..||
T Consensus 133 ~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~---------p~~~~~~~~~v~~a-~~~pv~~~gG 202 (251)
T d1ojxa_ 133 VKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKY---------TGDPKTFSWAVKVA-GKVPVLMSGG 202 (251)
T ss_dssp HHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECC---------CSSHHHHHHHHHHT-TTSCEEEECC
T ss_pred HHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecC---------CCcHHHHHHHHHhc-CCCceEEeCC
Confidence 346899886643 1232 26778899999999842 22334445444432 3689888888
Q ss_pred CC--CHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 289 VR--RGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~--~~~dv~k----alalGAd~V~igr~~l 313 (370)
-. +.+++++ ++..||.++.+||.+.
T Consensus 203 ~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~ 233 (251)
T d1ojxa_ 203 PKTKTEEDFLKQVEGVLEAGALGIAVGRNVW 233 (251)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEeechhhh
Confidence 65 4666655 5567999999999875
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=96.15 E-value=0.19 Score=45.02 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCHHHHHH-HHHcCccEEEEcc---CCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCC-------------------
Q 017492 234 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 289 (370)
Q Consensus 234 ~~~~~a~~-a~~aG~d~I~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI------------------- 289 (370)
.++++|+. +.+.|+|.+-++. ||-+.....+ -.++.|.+|.+.+ ++|+..=||=
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCC
Confidence 46888877 4578999999974 5543221112 3678899999887 7999988842
Q ss_pred ---CCHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 290 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 290 ---~~~~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
...+|+.+++..|..-|-+++-+..+... .. ..-.....+.+++-++..|+.+|..
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~ 302 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23589999999999999999976544221 01 1123334566677777778887754
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=96.04 E-value=0.018 Score=51.22 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.+++||.+.. +.+++++..+.+.|+|+++|+.
T Consensus 193 ~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 235 (267)
T d1qopa_ 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (267)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence 45679999999999999984 7899999999999999999953
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.01 E-value=0.0069 Score=52.23 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.++.|+.++++. ++-|.+..+++.++++.+.++|+++++--+ ...+.+..+.+ . ++|.+- |+.|
T Consensus 55 a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a~~-~--~i~~iP--Gv~T 119 (216)
T d1mxsa_ 55 GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAGVD-S--EIPLLP--GIST 119 (216)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHHHH-C--SSCEEC--EECS
T ss_pred HHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHHHh-c--CCCccC--CcCC
Confidence 567899999987 677888889999999999999999985311 12234443332 2 566654 7899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
+.++.+|+.+||+.|=+=
T Consensus 120 psEi~~A~~~G~~~vKlF 137 (216)
T d1mxsa_ 120 PSEIMMGYALGYRRFKLF 137 (216)
T ss_dssp HHHHHHHHTTTCCEEEET
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999998664
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.34 Score=42.86 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=72.8
Q ss_pred CCHHHHHH-HHHcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~-a~~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+. ..+.|+|.+-++. ||-+ .+.+ .++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|
T Consensus 154 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~Ki 228 (284)
T d1gvfa_ 154 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 228 (284)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCC---SSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHhCCCEEeeecCceeecc---CCCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEE
Confidence 56788765 4578999999974 5543 2333 557899999887 7999988855444 56677888999999
Q ss_pred EEcHHHHHHHHh-------cCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G~------~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+-.+... ..+ .-.....+.+++.++..|..+|..
T Consensus 229 Ni~T~l~~a~~~~~~~~l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~ 280 (284)
T d1gvfa_ 229 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 280 (284)
T ss_dssp EECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EechHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 110 123344566677777778877754
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=95.86 E-value=0.036 Score=48.45 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=83.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.+++.|++.+++.+-. .|
T Consensus 66 Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~------------------------------------------------~d 97 (247)
T d1twda_ 66 YSDGEFAAILEDVRTVRELGFPGLVTGVLD------------------------------------------------VD 97 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBC------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEEEC------------------------------------------------CC
Confidence 555556777888888999999998864211 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. ++|+.+=-. .++ +..+.+.+.|++.|-.|++.. .....++.|.++.+...+.+ |
T Consensus 98 g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~----~a~~G~~~L~~L~~~a~~~i-I 172 (247)
T d1twda_ 98 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRDAPI-I 172 (247)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSSCCE-E
T ss_pred CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCC----chhHHHHHHHHHHHhcCCcE-E
Confidence 345677788887776 677766432 344 446788999999998865322 22334556666665433344 8
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++.|||+. ..+.+.+..|++.+=.
T Consensus 173 m~GgGI~~-~Ni~~l~~~g~~e~H~ 196 (247)
T d1twda_ 173 MAGAGVRA-ENLHHFLDAGVLEVHS 196 (247)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEE
T ss_pred EecCCCCH-HHHHHHHHcCCCEEEE
Confidence 88899876 5677777789887654
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.023 Score=49.18 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
|...+.+..+...+.||..+--+-|-|+..+|..|+--..-+|-+ . -+.+ +..-.+
T Consensus 110 D~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlg------------s-----------PIGS-g~Gl~n 165 (251)
T d1xm3a_ 110 DPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGA------------S-----------PIGS-GQGILN 165 (251)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECS------------S-----------STTC-CCCCSC
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhh------------h-----------hhhc-CCCcCC
Confidence 444555555555666777776666666665555543111101100 0 0000 122346
Q ss_pred HHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
...|+.|++..++||+|= |+-++.+|..++|.|+|+|-+
T Consensus 166 ~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 166 PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 778999999999999995 678999999999999999977
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.81 E-value=0.0058 Score=55.97 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH-----------HHHHHHhC
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALG 302 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d-----------v~kalalG 302 (370)
.+.|+...+.|||.|.+-.--+.. ...-.+.++.+.++.+.+ .+||.+.||||+-+| +.+.+.+|
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 466888899999999874321110 001123456677776655 899999999999765 57888999
Q ss_pred CCEEEEcHHHHH
Q 017492 303 ASGIFIGRPVVY 314 (370)
Q Consensus 303 Ad~V~igr~~l~ 314 (370)
||-|.+|+..+.
T Consensus 129 adKVvI~T~ai~ 140 (323)
T d1jvna1 129 ADKVSIGTDAVY 140 (323)
T ss_dssp CSEEEECHHHHH
T ss_pred CCeEEechHHhh
Confidence 999999998764
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.74 E-value=0.023 Score=49.16 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.+..+.+.+ .++|+++.+||++++++.+ ++.|||+|.+|+++..
T Consensus 169 ~~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~-v~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 169 IEAVKKTKAVL-ETSTLFYGGGIKDAETAKQ-YAEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHHTC-SSSEEEEESSCCSHHHHHH-HHTTCSEEEECTHHHH
T ss_pred chhHHHHHhhc-cCcceEEEcccCCHHHHHH-HHcCCCEEEECHHHHh
Confidence 34455555543 5799999999999999966 5579999999999864
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.48 E-value=0.011 Score=51.23 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=36.8
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.+..+++.. .++||++.+||++++++.++. -+||+|.+|++++.
T Consensus 175 ~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaive 220 (231)
T d2f6ua1 175 PELVAEVKKVL-DKARLFYGGGIDSREKAREML-RYADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHH-HHSSEEEECHHHHH
T ss_pred hhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHhc
Confidence 34555566654 479999999999999997755 58999999999864
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.18 E-value=0.03 Score=47.53 Aligned_cols=83 Identities=24% Similarity=0.165 Sum_probs=60.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.|+++++.. ++-|.+..+.+.++++.+.++|+++++ |-+ .+.+.+..+.+. .+|++ =|+.
T Consensus 47 a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv-sP~---------~~~~v~~~~~~~---~i~~i--PGv~ 111 (202)
T d1wa3a1 47 ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV-SPH---------LDEEISQFCKEK---GVFYM--PGVM 111 (202)
T ss_dssp HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE-CSS---------CCHHHHHHHHHH---TCEEE--CEEC
T ss_pred HHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe-CCC---------CcHHHHHHHHhc---CCcee--CCcC
Confidence 456788877543 455777788999999999999999995 211 123444444433 55555 4799
Q ss_pred CHHHHHHHHHhCCCEEEEcH
Q 017492 291 RGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr 310 (370)
|+.++.+++.+|++.+-+--
T Consensus 112 TpsEi~~A~~~G~~~lK~fP 131 (202)
T d1wa3a1 112 TPTELVKAMKLGHTILKLFP 131 (202)
T ss_dssp SHHHHHHHHHTTCCEEEETT
T ss_pred cHHHHHHHHHCCCCEEEecc
Confidence 99999999999999997643
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=95.03 E-value=0.36 Score=40.06 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCcEEEE--ec---------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 215 KDVKWLQTITKLPILVK--GV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK--~v---------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.++++++..+.|+... .. ...++.+.+.++|+|.|.+...-. ........+.+..+.+. ...+
T Consensus 46 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~ 120 (222)
T d1y0ea_ 46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQ--QRPKETLDELVSYIRTH---APNV 120 (222)
T ss_dssp HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS--CCSSSCHHHHHHHHHHH---CTTS
T ss_pred HHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEEEeecccc--ccccchHHHHHHHHHHh---CCce
Confidence 34556666666665422 11 346778889999999998754211 01112233444444443 3345
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+..+++.+..+..++.+.|+|.+.++
T Consensus 121 ~v~~~~~t~~~a~~~~~~g~d~i~~~ 146 (222)
T d1y0ea_ 121 EIMADIATVEEAKNAARLGFDYIGTT 146 (222)
T ss_dssp EEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred EEeecCCCHHHHHHHHHcCCCeEEEe
Confidence 56677999999999999999999875
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.93 E-value=0.25 Score=41.55 Aligned_cols=93 Identities=16% Similarity=0.039 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCcEEEEe-----------cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITKLPILVKG-----------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-----------v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++++|+.++.|+.... ....++...+..+|+|.+.+...-+.. ......++.+..+.... ..
T Consensus 55 ~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~- 130 (230)
T d1yxya1 55 VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDR-HDGLDIASFIRQVKEKY--PN- 130 (230)
T ss_dssp HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCC-TTCCCHHHHHHHHHHHC--TT-
T ss_pred hhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccc-cchhhHHHHHHHHHhcC--CC-
Confidence 4556677777777765432 134577888999999999886532211 11233455666555543 22
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++..+++.+.+++.+++.+|||.+.++.
T Consensus 131 ~~v~~~v~t~~~a~~a~~~Gad~i~~~~ 158 (230)
T d1yxya1 131 QLLMADISTFDEGLVAHQAGIDFVGTTL 158 (230)
T ss_dssp CEEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred ceEecCCCCHHHHHHHHhcCCCEEEeec
Confidence 4555679999999999999999998765
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=94.89 E-value=0.045 Score=46.22 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=58.6
Q ss_pred HHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCc-----cCCCCccc-----hHHHHHHHHHHcc--CCC
Q 017492 216 DVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDYVPA-----TIMALEEVVKATQ--GRI 281 (370)
Q Consensus 216 ~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg-----~~~~~~~~-----~~~~l~~i~~~~~--~~i 281 (370)
..+.+|+.. +-||++-++.+.-.|+.+.++|+|+|.+++.|- .....+.. ....+....+.+. .++
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~i 87 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHT 87 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhcccC
Confidence 455666654 689999999999999999999999999986431 11111111 1122222222221 379
Q ss_pred cEEEecC----CCCHHH-HHHHHHhCCCEEEE
Q 017492 282 PVFLDGG----VRRGTD-VFKALALGASGIFI 308 (370)
Q Consensus 282 pvi~~GG----I~~~~d-v~kalalGAd~V~i 308 (370)
|||+|.. ..+... +.+..++|+.+|++
T Consensus 88 PviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 88 PVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp CEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred ceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 9999864 333334 44445599999986
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.84 E-value=0.045 Score=48.83 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=57.2
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+++++||++.-|=.+.+++++ |..+|||++++..|+++
T Consensus 35 ~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~ 114 (296)
T d1xxxa1 35 NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYS 114 (296)
T ss_dssp HHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 45678999999997654432111111 22345555666677899988777777666655 44589999999999876
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
. .+.+++.++++.+
T Consensus 115 ~---~~~~~l~~~~~~v 128 (296)
T d1xxxa1 115 K---PPQRGLQAHFTAV 128 (296)
T ss_dssp C---CCHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHH
Confidence 3 2455554444443
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.78 E-value=0.036 Score=47.13 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCcEE--EEecCCH----HHHHHHHHcCccEEEEccCCccC---------------------CC-----
Q 017492 214 WKDVKWLQTITKLPIL--VKGVLTA----EDARIAVQAGAAGIIVSNHGARQ---------------------LD----- 261 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~--vK~v~~~----~~a~~a~~aG~d~I~vs~~gg~~---------------------~~----- 261 (370)
.+.++++++..+.||+ .|..--+ ..++.+.++|+|.++|...+|.. +.
T Consensus 43 ~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~ 122 (212)
T d1km4a_ 43 MDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAE 122 (212)
T ss_dssp THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGG
T ss_pred HHHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhh
Confidence 4568888888888887 4654222 33667789999999997655520 00
Q ss_pred -----------------------CccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 262 -----------------------YVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 262 -----------------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~igr~~l~ 314 (370)
++....+.+..+++..+ .-.++.++||+. +.+...++ .|||.+.+||+...
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~ 197 (212)
T d1km4a_ 123 MFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYL 197 (212)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHT
T ss_pred hhhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhcc
Confidence 00112233444444432 345778899974 23333333 58999999999874
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=94.73 E-value=0.054 Score=48.04 Aligned_cols=89 Identities=15% Similarity=0.303 Sum_probs=55.8
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-... -...+..+.++.++++||++.-|=.+..++++ +..+|||++++.-|++
T Consensus 30 i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~ 109 (292)
T d1xkya1 30 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109 (292)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 345678999999996654421111111 22345566666667899998777666666544 4558999999999876
Q ss_pred HHHHhcCHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~ 330 (370)
+. ..++++.++++.
T Consensus 110 ~~---~s~~~i~~~~~~ 123 (292)
T d1xkya1 110 NK---PSQEGMYQHFKA 123 (292)
T ss_dssp SC---CCHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHH
Confidence 53 234444444433
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.65 E-value=0.04 Score=51.48 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+-+..+.++|+|.|++....|+ .....+.+..+++.. .++|||+ |++.|.+.+...+..|||+|-+|-
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~----s~~~~~~i~~ik~~~-~~v~vIa-GNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHhhccceeeeeccccc----hHHHHHHHHHHHHHC-CCCceee-ccccCHHHHHHHHhcCCCeeeecc
Confidence 46688899999999999753332 122345666776654 4788766 889999999988889999998873
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.054 Score=48.11 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=60.9
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH----hCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala----lGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++...+++||++..|=.+..++++... +|||++++..|++
T Consensus 28 i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~ 107 (292)
T d2a6na1 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCC
Confidence 355678899999997664421111111 12355556666677899999988888888877554 6999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~v~~ 124 (292)
T d2a6na1 108 NR---PSQEGLYQHFKAIAE 124 (292)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHhh
Confidence 53 235555555554433
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.59 E-value=0.073 Score=49.17 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.+..+.++|+|.|+++...|+ .......+.++++.. .+++|| .|.+.|.+.+.+.+..|||+|-+|
T Consensus 109 ~er~~~l~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~-~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLI-AGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCccc----ccchhHHHHHHHhhC-CCccee-ecccccHHHHHHHHhcCCceEEee
Confidence 35688889999999999754332 122345677776654 477877 499999999999999999999887
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=94.56 E-value=0.032 Score=48.45 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=52.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..-.+. ..+.+.....+..+.+ . .+|+...|||++.+|+.+.+..||+-|.+++.++.
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 5688888999999987532110 0011222333333332 3 57999999999999999999999999999997653
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=94.01 E-value=0.074 Score=47.05 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=42.1
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (370)
..+.++.+|+.+++|+.+. |+.++++++.+ .++|+++|+.+--+.+..+......+.++.+.+
T Consensus 190 ~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e~~~~~~~~~~i~~~l 253 (271)
T d1ujpa_ 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5667999999999999998 47889999875 599999995421111111123334455565554
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.077 Score=47.01 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=49.9
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc---hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 311 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~ 311 (370)
++.+.+.|+++|.+.++.|-. ...+ -.+.+..+.+...+++||++.-|=.+-.++++ |-.+|||++++.-|
T Consensus 28 i~~l~~~Gv~Gi~v~GstGE~--~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 28 VRYQLENGVNALIVLGTTGES--PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp HHHHHHTTCCEEEESSGGGTG--GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHcCCCEEEECeeccch--hhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778999999996653321 1122 12344455555667899999888777777554 34479999999988
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
+++
T Consensus 106 ~y~ 108 (295)
T d1o5ka_ 106 YYN 108 (295)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.40 E-value=0.089 Score=45.60 Aligned_cols=40 Identities=33% Similarity=0.518 Sum_probs=35.0
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...++.+++..++||++- |+.++.||..+++.|+|+|-+
T Consensus 167 n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 167 NPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 4557788888889999986 678999999999999999977
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=93.03 E-value=0.51 Score=41.66 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=54.4
Q ss_pred HHHHHHhcCCcEEEEecC---------C-H----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 217 VKWLQTITKLPILVKGVL---------T-A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~---------~-~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
+.+.+..+++|+++=.+. + + +-++.+.+.|+|.+.+---|-. ....-.......++.+.. .+|
T Consensus 145 l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~-~~~~~~~~~~~~~~~~~~--~~p 221 (291)
T d1to3a_ 145 FNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYG-KGARSDLLTASQRLNGHI--NMP 221 (291)
T ss_dssp HHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGG-CSCHHHHHHHHHHHHHTC--CSC
T ss_pred HHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCc-hhhhHHHHHHHHHHhhcC--CCc
Confidence 333345568998876431 1 2 2256677999999988421100 000011222344444433 688
Q ss_pred -EEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 283 -VFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 283 -vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
|+.+||. +.+++.+ |+..||.++.+||.+.+
T Consensus 222 ~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~ 257 (291)
T d1to3a_ 222 WVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS 257 (291)
T ss_dssp EEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred EEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence 7777776 4455555 44589999999998754
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=92.88 E-value=0.17 Score=45.99 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.+..+.++|+|.|+++...|+ .....+.+..+++.. .++||++ |.+.+.+.+.+.+..|||+|-+|
T Consensus 100 ~e~~~~li~agvd~ivId~A~G~----~~~~~~~ik~ik~~~-~~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADY-PDLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEecCCCC----chhHHHHHHHHHHhC-CCCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 45577889999999998754332 122345667776654 3677766 78999999988888999999775
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=92.87 E-value=0.23 Score=43.04 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHcCccEEEEccC---CccCCCCccchHHHHHHHHHHccCCCcEEEe-----cCC-CCH-------HHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGV-RRG-------TDVF 296 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~-----GGI-~~~-------~dv~ 296 (370)
+.+.++|..|.+.|||-|.+... ||. .|+...+..+++.+ ++||.+. |.+ .+. .|+.
T Consensus 7 v~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~ 79 (247)
T d1twda_ 7 CYSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVR 79 (247)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999643 332 45677788887776 7998875 333 233 4666
Q ss_pred HHHHhCCCEEEEcH
Q 017492 297 KALALGASGIFIGR 310 (370)
Q Consensus 297 kalalGAd~V~igr 310 (370)
.+..+|||+|.+|-
T Consensus 80 ~~k~~G~dGvV~G~ 93 (247)
T d1twda_ 80 TVRELGFPGLVTGV 93 (247)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHcCCCeEEEEE
Confidence 77789999999994
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=92.79 E-value=2.7 Score=36.31 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=104.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeec-----CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-----~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-..-.+.++-...++-..+.|+...+- ++.+.|.+|.. +.. + .+.+++.- ..+-+.
T Consensus 8 ~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~ 86 (292)
T d1xkya1 8 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHA 86 (292)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred eeeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHH
Confidence 466666764333333444456777777788754442 23345666632 222 2 35666654 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
+.++.++|+++|++++.+. .|.. .. .+.+-.++..
T Consensus 87 ~i~~a~~a~~~Gad~ilv~--pP~~----------------~~---------------------------~s~~~i~~~~ 121 (292)
T d1xkya1 87 SIDLTKKATEVGVDAVMLV--APYY----------------NK---------------------------PSQEGMYQHF 121 (292)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCS----------------SC---------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCC----------------CC---------------------------CCHHHHHHHH
Confidence 7788999999999999885 3321 00 0001124456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.+.+.+++|+++=.. .+++...++.+. ++-+|.-+. ........+.+....+..++ .|+
T Consensus 122 ~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~giK~~~----------~~~~~~~~~~~~~~~~~~v~-~G~- 189 (292)
T d1xkya1 122 KAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAVY-SGD- 189 (292)
T ss_dssp HHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEEE-ESS-
T ss_pred HHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEEeccc----------cchhhhheeeeecCCCCEEE-ECC-
Confidence 7777788999998542 566666665542 233333211 12334445555554455555 343
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
.......+.+|+++++.|..-+
T Consensus 190 --~~~~~~~~~~G~~G~~~~~~n~ 211 (292)
T d1xkya1 190 --DGLTLPAMAVGAKGIVSVASHV 211 (292)
T ss_dssp --GGGHHHHHHTTCCEEEESTHHH
T ss_pred --ccccchHHHcCCCccccchhhH
Confidence 2446678889999999998644
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=92.70 E-value=2.4 Score=36.63 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++||.+|++-. -+.+...+|.+.+ ++|+|.-|
T Consensus 163 ~~a~~le~AGa~~ivlE~----------Vp~~va~~It~~~--~iptIgIG 201 (260)
T d1o66a_ 163 NDAKAHDDAGAAVVLMEC----------VLAELAKKVTETV--SCPTIGIG 201 (260)
T ss_dssp HHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHhhhhehhhhh----------ccHHHHHHHHhhh--cceeeecc
Confidence 678999999999999843 1335667777777 89999766
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.31 Score=43.24 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=59.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----CCCCccchH----HHHHHHHHHccCCCcEEEec--CCCC-H
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-G 292 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~ipvi~~G--GI~~-~ 292 (370)
+-|+.+-++-++-.|+.+.++|.+++.+|+.+-. ..|.+.-++ +.+.+|.+.+ ++||++|+ |..+ +
T Consensus 15 ~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~D~d~GyG~~~ 92 (289)
T d1muma_ 15 ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDADIGFGSSA 92 (289)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEECTTCSSSSH
T ss_pred CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeeecccccccccc
Confidence 6799999999999999999999999999864211 134444333 3456666665 89999998 4443 4
Q ss_pred HHH----HHHHHhCCCEEEEc
Q 017492 293 TDV----FKALALGASGIFIG 309 (370)
Q Consensus 293 ~dv----~kalalGAd~V~ig 309 (370)
..+ .++...|+.+|.|=
T Consensus 93 ~~v~~~v~~~~~aGvagi~iE 113 (289)
T d1muma_ 93 FNVARTVKSMIKAGAAGLHIE 113 (289)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHCCCCEEEec
Confidence 343 44556899999874
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=92.23 E-value=0.16 Score=45.44 Aligned_cols=87 Identities=23% Similarity=0.409 Sum_probs=60.1
Q ss_pred CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017492 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (370)
Q Consensus 121 ~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (370)
.+-|..+.+-.+.|.+...+.++.++++|++.+.||--+.. ++
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~---------q~---------------------------- 163 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QS---------------------------- 163 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TT----------------------------
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhh---------hc----------------------------
Confidence 34456666666556666677888888899999988732110 00
Q ss_pred HHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 201 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
..+..+|+.|+.+++ ++||+.-| +.+.+++..+.+ .|+|+|-++
T Consensus 164 -------~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiG 209 (305)
T d1vhna_ 164 -------FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 209 (305)
T ss_dssp -------TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred -------cccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehh
Confidence 122346777777766 58988765 689999998875 699999883
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=92.21 E-value=0.22 Score=43.92 Aligned_cols=84 Identities=25% Similarity=0.234 Sum_probs=57.3
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchH----HHHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+-|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-++ +.+.+|.+.+ ++||++|+ |..++.+
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN 92 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecccccccchH
Confidence 5788888999999999999999999999875311 123332222 3445555554 89999987 7777665
Q ss_pred HH----HHHHhCCCEEEEcH
Q 017492 295 VF----KALALGASGIFIGR 310 (370)
Q Consensus 295 v~----kalalGAd~V~igr 310 (370)
+. ++...||.+|.|=-
T Consensus 93 v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhccceeEeec
Confidence 54 45558999998753
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=91.88 E-value=0.11 Score=45.73 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.+++||.+.. +.++++++.+.+.|+|+++|+.
T Consensus 189 ~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 189 ESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 4579999999999999984 6899999999999999999954
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=91.39 E-value=0.66 Score=40.20 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.|+...+.||++|.|-.-.. +-...++.|..+++.+ ++||+.--=|.+..++.++..+|||+|.+--+++
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~----~F~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCceEEEEcCcc----cccccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHHH
Confidence 4568888999999999864210 1122456778787777 8999999999999999999999999999887653
|
| >d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.68 Score=41.47 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHH
Q 017492 212 LSWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKA 276 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~ 276 (370)
.+|+=|+.++... ++++-+=.+.+.+.|..+.++|+.+|... -||-.| .+.+....+.++.+.
T Consensus 134 aT~eGi~A~~~L~~~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 211 (316)
T d1onra_ 134 STWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQY 211 (316)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHH
Confidence 3677666655543 89999999999999999999999998774 233111 123344555555544
Q ss_pred c---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 277 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 277 ~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
. +.+..|++ ..+|+..++... +|+|.+-+.-.++..+.
T Consensus 212 ~k~~g~~t~v~~-AS~r~~~~v~~l--aG~D~~Ti~p~~l~~l~ 252 (316)
T d1onra_ 212 YKEHGYETVVMG-ASFRNIGEILEL--AGCDRLTIAPALLKELA 252 (316)
T ss_dssp HHHTTCCCEEEE-BCCSSHHHHHHT--TTSSEEEECHHHHHHHH
T ss_pred HHHcCCCceeeh-hhccchhhHHHH--hcCCceecCHHHHHHHh
Confidence 3 33555666 559999999653 69999999888877654
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.26 E-value=0.31 Score=42.88 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=47.9
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++|+++.-|=.+-.++.+ +-.+|||++++-.|+++
T Consensus 30 ~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~ 109 (295)
T d1hl2a_ 30 QFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYY 109 (295)
T ss_dssp HHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS
T ss_pred HHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeecccc
Confidence 45678899999997654421111111 22345555666667899988555555555544 33489999999988765
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.25 E-value=1.6 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++||.+|++-. -+.+...+|.+.+ ++|+|.-|
T Consensus 166 ~da~~le~AGa~~ivlE~----------Vp~~la~~It~~~--~IPtIGIG 204 (262)
T d1oy0a_ 166 ADAIAVAEAGAFAVVMEM----------VPAELATQITGKL--TIPTVGIG 204 (262)
T ss_dssp HHHHHHHHHTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHhCCcEEEeccc----------ccHhHHHHHHhhC--CceEEEec
Confidence 568889999999999843 1345667777777 89999766
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=91.13 E-value=1.3 Score=44.22 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=98.8
Q ss_pred CCCccHHHHHHHHHhcCCc-----EEEEecC---CH--------HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHH
Q 017492 209 DRSLSWKDVKWLQTITKLP-----ILVKGVL---TA--------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 272 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~P-----v~vK~v~---~~--------~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~ 272 (370)
.|-++.+.+++|++..+.+ +..+.-. +. ++|..+++.|+..|++|..+-..-....|.+-++..
T Consensus 125 sPILs~~e~~~i~~~~~~~~~~id~~f~~~~g~~~L~~AL~~l~~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~a 204 (771)
T d1ea0a2 125 SPVLTTAEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILATGA 204 (771)
T ss_dssp CSBCCHHHHHHHHHHHGGGEEEEECEEESTTCTTHHHHHHHHHHHHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHH
T ss_pred CCccCHHHHHHHHccCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHHHHHhCCCcEEEEeccccccchhhhHHHHHHHH
Confidence 3445777788887654332 2222111 12 347788999999999997643222233455556666
Q ss_pred HHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEcHHHH--HHHHhc-------CHHHHHHHHHHHHHHHHH
Q 017492 273 VVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVV--YSLAAE-------GEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 273 i~~~~-----~~~ipvi~-~GGI~~~~dv~kalalGAd~V~igr~~l--~~~~~~-------G~~~v~~~l~~l~~el~~ 337 (370)
+..++ +.++-||+ +|-+|+.-|++-.+-.||++|.=--++- ..+... -++.+.++.+.+.++|..
T Consensus 205 VHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlK 284 (771)
T d1ea0a2 205 VHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLK 284 (771)
T ss_dssp HHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccChHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 65554 34566555 5678999999888889999996433221 111111 146788999999999999
Q ss_pred HHHHcCCCChhhhcccceeec
Q 017492 338 AMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 338 ~m~~~G~~~l~~l~~~~l~~~ 358 (370)
.|..+|.+.++--++.-+...
T Consensus 285 IMSKMGIStl~SY~GaqiFEa 305 (771)
T d1ea0a2 285 IMSKMGISVISSYRGGGNFEA 305 (771)
T ss_dssp HHHTTTCCCHHHHTTSCCEEE
T ss_pred HHHHhchhhhhHHHHhhhhcc
Confidence 999999999999987766543
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.88 E-value=0.7 Score=42.84 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=67.0
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
|.|+.|-+.-+.+.+.++++.+++.|+++++++-..... .. .....+ ..+..+|. .
T Consensus 268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~--~~-----------~~~~~~---------~~GGlSG~--~ 323 (409)
T d1tv5a1 268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI--ND-----------IKSFEN---------KKGGVSGA--K 323 (409)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCC--CC-----------CGGGTT---------CCSEEEEH--H
T ss_pred ceEEEeCCCCCchhhHHHHHHHHhccccceecccccccc--cc-----------cccccc---------cCCcccch--h
Confidence 567777766677888999999999999999876432211 00 000000 00011111 1
Q ss_pred hhhcCCCCccHHHHHHHHHhcC--CcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 204 VAGQIDRSLSWKDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~--~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+. +...+.++++++.++ +||+ +.||.+.+||...+.+||+.|.+..
T Consensus 324 l~-----~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T 372 (409)
T d1tv5a1 324 LK-----DISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS 372 (409)
T ss_dssp HH-----HHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESH
T ss_pred HH-----HHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhhh
Confidence 11 135678999999884 8854 5678999999999999999999853
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=90.81 E-value=1.5 Score=39.24 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=62.8
Q ss_pred hccCCCceEEEEee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCc
Q 017492 118 ASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (370)
Q Consensus 118 ~~~~~~~~~~Qly~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (370)
.+..+.+.++-+-. ..+.+...++++..+++|.+.+.++...... +.
T Consensus 204 r~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~-------------~~-------------- 256 (337)
T d1z41a1 204 KQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH-------------AD-------------- 256 (337)
T ss_dssp HHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC-------------CC--------------
T ss_pred hhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccc-------------cc--------------
Confidence 33444455555432 2356667778888888999888776543211 00
Q ss_pred cccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
....+.+..+..+.+|+.+++||++-+ +.++++|+.+++.| +|.|.+
T Consensus 257 --------------~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 257 --------------INVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp --------------CCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred --------------cccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 001223456678899999999998755 46899999999998 998876
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.74 E-value=2 Score=32.59 Aligned_cols=93 Identities=10% Similarity=0.152 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHH------cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~------aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
..+.++.+-+.++... +....+.++|..+.+ ...|.|.+.-+.. +...++.+.++++....++|||+-
T Consensus 13 ~~~~l~~~L~~~g~~~-v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~piI~l 86 (128)
T d2r25b1 13 NQEVIKRMLNLEGIEN-IELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-----KVDGLLSTKMIRRDLGYTSPIVAL 86 (128)
T ss_dssp HHHHHHHHHHHTTCCC-EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-----SSCHHHHHHHHHHHSCCCSCEEEE
T ss_pred HHHHHHHHHHHcCCeE-EEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCC-----CCCHHHHHHHHHHccCCCCeEEEE
Confidence 3445666666666542 345567777755443 3578887764321 133567888887655557899999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+..+..+..+++.+||+.. +-.|+
T Consensus 87 T~~~~~~~~~~~~~~G~~~~-l~KP~ 111 (128)
T d2r25b1 87 TAFADDSNIKECLESGMNGF-LSKPI 111 (128)
T ss_dssp ESCCSHHHHHHHHHTTCSEE-EESSC
T ss_pred ECCCCHHHHHHHHHcCCCEE-EECCC
Confidence 99999999999999999987 44554
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=90.67 E-value=0.28 Score=44.93 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=50.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++.+.++|+|.|.+....|+. ....+.+..+++...+.+||++ |.|-|++.+...+..|||+|-+|
T Consensus 113 ~~~~~L~~ag~d~i~IDvAhG~~----~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 113 ERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHTCSEEEECCSCCCB----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHhhcCceEEeechhccch----hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence 45778899999999997654431 2234566666555544677765 88999999988888999999888
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.65 E-value=1.3 Score=38.92 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 212 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..++.++++++.+ ++||+.= |+.+.+|+...+.+|||+|.|..
T Consensus 241 ~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~t 285 (312)
T d1gtea2 241 IALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCS 285 (312)
T ss_dssp HHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred hhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECH
Confidence 3577889999888 5898765 47899999999999999999953
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=90.08 E-value=5.1 Score=34.35 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=97.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHhc-------cCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~~-------~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+. ..-.+.++-..+.+-.-+.|+...+ |++.+.|.+|..+ ... .+.+++.- ..+.+..
T Consensus 8 ~~~~TPf~-d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~st~~a 85 (295)
T d1o5ka_ 8 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKT 85 (295)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred eeeEcCcC-CCcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecc-cccHHHH
Confidence 44555653 2223333334566666677876543 2334567776421 112 35666653 3456677
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|... . . ..+-.++..+
T Consensus 86 i~~a~~A~~~Gad~v~v~--pP~y~----------------~-~--------------------------s~~~i~~~~~ 120 (295)
T d1o5ka_ 86 LKLVKQAEKLGANGVLVV--TPYYN----------------K-P--------------------------TQEGLYQHYK 120 (295)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------------C-C--------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEe--CCCCC----------------C-C--------------------------CHHHHHHHHH
Confidence 788999999999999875 23210 0 0 0001344567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.+.+.+++|+++=.. .+++...++.+.- +-++.-+. + .......+....+... ..-.+..|.
T Consensus 121 ~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~iK~~~--~-----~~~~~~~~~~~~~~~~-~~~~v~~g~- 191 (295)
T d1o5ka_ 121 YISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEAN--P-----DIDQIDRTVSLTKQAR-SDFMVWSGN- 191 (295)
T ss_dssp HHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC--C-----CHHHHHHHHHHHHHHC-TTCEEEESS-
T ss_pred HHHhccCCCeeEEeccchhcccchhHHHHHHHhhcccccceecCC--c-----chhhhhhHHHHhhhcC-Ccceecccc-
Confidence 777788999988643 5677766665432 33333221 1 0112222222222222 222333343
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
...+..++.+||++++.|..
T Consensus 192 --~~~~~~~~~~Ga~G~i~~~~ 211 (295)
T d1o5ka_ 192 --DDRTFYLLCAGGDGVISVVS 211 (295)
T ss_dssp --GGGHHHHHHHTCCEEEESGG
T ss_pred --ccchhhhhhcCCCccccccc
Confidence 24466788999999999974
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.29 Score=41.72 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=42.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH----------HHHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~----------dv~kalalGAd~V 306 (370)
+.+..+.+.|++++..+.+ .+..+.+.. +.-.++.+.||+-.. ...+|+..|||.+
T Consensus 142 ~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 207 (231)
T d1eixa_ 142 RLAALTQKCGLDGVVCSAQ-------------EAVRFKQVF-GQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYM 207 (231)
T ss_dssp HHHHHHHHTTCSEEECCGG-------------GHHHHHHHH-CSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEE
T ss_pred HHHHHHHHhccccccccch-------------hhhhhhhhc-CCccceecCCcccCCCCccCccccCCHHHHHHcCCCEE
Confidence 3467788899999876432 223333333 244578888886522 1456778999999
Q ss_pred EEcHHHHH
Q 017492 307 FIGRPVVY 314 (370)
Q Consensus 307 ~igr~~l~ 314 (370)
.+||+.+.
T Consensus 208 IVGR~It~ 215 (231)
T d1eixa_ 208 VIGRPVTQ 215 (231)
T ss_dssp EECHHHHT
T ss_pred EECCcccC
Confidence 99999874
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.52 Score=41.33 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHc-CccEEEEccCCccCCCCccc---hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 241 IAVQA-GAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 241 ~a~~a-G~d~I~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
.+++. |+++|.+.++.|-. ...+ -.+.+..+.+..++++||++.=|=.+..|+++ +-.+|||++++..|+
T Consensus 32 ~li~~~Gv~gi~v~GttGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~ 109 (293)
T d1f74a_ 32 HNIDKMKVDGLYVGGSTGEN--FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 109 (293)
T ss_dssp HHHHTSCCSEEEESSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred HHHHhCCCCEEEECccCcch--hhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCcc
Confidence 34554 99999996553321 1122 22344555666667899987655566666654 334899999999988
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
++
T Consensus 110 ~~ 111 (293)
T d1f74a_ 110 YY 111 (293)
T ss_dssp SS
T ss_pred cc
Confidence 75
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=89.37 E-value=1.2 Score=34.66 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCCCcEEEecCCC
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..++..+-+..+.-|+.=|. .++++ +..+.+.++|.|-+|...++. .+.. +.+..+++....++||++-|++.
T Consensus 20 ~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~----~~~~~~~~~~l~~~~~~~i~iivGG~~~ 95 (137)
T d1ccwa_ 20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG----EIDCKGLRQKCDEAGLEGILLYVGGNIV 95 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH----HHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc----hHHHHHHHHHHHHhccCCCEEEEeCCcC
Confidence 34566665556777765554 45544 677889999999998754321 1111 23333333322479999988885
Q ss_pred C----HHH-HHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 291 R----GTD-VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 291 ~----~~d-v~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
+ ..+ ..+.-++|.|.|.=.. .....+++.++++|+
T Consensus 96 ~~~~~~~~~~~~l~~~Gv~~if~~~-----------t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 96 VGKQHWPDVEKRFKDMGYDRVYAPG-----------TPPEVGIADLKKDLN 135 (137)
T ss_dssp SSSCCHHHHHHHHHHTTCSEECCTT-----------CCHHHHHHHHHHHHT
T ss_pred CCccccHHHHHHHHHcCCCEEECCC-----------CCHHHHHHHHHHHhC
Confidence 4 444 4445578999874221 122345666666653
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=88.99 E-value=0.28 Score=42.08 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=50.0
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH----------HHHHHHhCCCEEE
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIF 307 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d----------v~kalalGAd~V~ 307 (370)
.+..+.+.|+++++.+.+ .+..+++.. +.-.++.+.||+-..+ ..+|+..|||.+.
T Consensus 147 ~~~~~~~~g~~g~v~s~~-------------~~~~~r~~~-~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iI 212 (237)
T d1dbta_ 147 YSKQAEESGLDGVVCSVH-------------EAKAIYQAV-SPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIV 212 (237)
T ss_dssp HHHHHHHTTCSEEECCGG-------------GHHHHTTTS-CTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEE
T ss_pred HHHhhhhcCcceeecchh-------------hhhhhcccc-ccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEE
Confidence 356677889999877532 233333332 2445678888865322 5678889999999
Q ss_pred EcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 308 IGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 308 igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
+||+.+.+ +-..+.++.++++++
T Consensus 213 VGR~I~~s------~dP~~aa~~i~~~ie 235 (237)
T d1dbta_ 213 VGRSITKA------EDPVKAYKAVRLEWE 235 (237)
T ss_dssp ECHHHHTS------SCHHHHHHHHHHHHH
T ss_pred ECCcccCC------CCHHHHHHHHHHHHc
Confidence 99998753 112345566666654
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.90 E-value=0.6 Score=42.90 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+.+..+.++|+|.|++....|+ .....+.+..+++.. .++||+ .|.+.|.+.+...+.+|||+|-+|-
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~-~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGN----SIFQINMIKYMKEKY-PNLQVI-GGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCC----SHHHHHHHHHHHHHS-TTCEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhccceEeeeccCcc----chhhHHHHHHHHHHC-CCCcee-ecccccHHHHHHHHHhCCCEEeecc
Confidence 3467788999999999654332 122344556665553 367776 5889999999998899999998774
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=88.03 E-value=1.5 Score=39.43 Aligned_cols=267 Identities=19% Similarity=0.220 Sum_probs=137.5
Q ss_pred cCCccchhhH-HHhHhhcccceeeecccCC-------CCCCccceeEcCeee---cCceeecccccccccCChhhHHHHH
Q 017492 27 ASGAEDQWTL-QENRNAFSRILFRPRILID-------VSKIDMNTTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATAR 95 (370)
Q Consensus 27 ~~ga~~~~t~-~~n~~~~~~i~l~pr~l~~-------~~~vd~s~~l~g~~l---~~Pi~iapm~~~~~~~~~~e~~la~ 95 (370)
-|-.||+..+ ....++|..+.=+-|+..+ ...-|+.+++.|.++ +..+|-.|...-+ .+--..+|+
T Consensus 39 ig~iGd~~~~~~~~~~~l~~Ve~v~~i~~pykl~SR~~~~~~t~I~v~gv~iG~~~l~lIAGPC~vES---~e~~~~~A~ 115 (338)
T d1vr6a1 39 IGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEG---REMLMETAH 115 (338)
T ss_dssp EEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSBCCC---HHHHHHHHH
T ss_pred EEEECCccccCHHHHhcCCcceEEEecCCchhhhhCccCCCCceEEeCCEEECCCceEEEecCCCCCC---HHHHHHHHH
Confidence 4555555444 3345666666555555433 223355555555444 2456667765432 222247899
Q ss_pred HHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH-cCCcEEEEecCCCCCcchhHHhhhhcC
Q 017492 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFT 174 (370)
Q Consensus 96 aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~d~~~~~~ 174 (370)
.+++.|..+..+.. -.+ +. .+.-|| +.. +.-.+.++++++ .|...+ | | +.-.+.-+....+
T Consensus 116 ~lke~g~~~~r~g~-fKp-----Rt--sp~sf~---g~g-~~gL~~l~~~k~~~glpvv--T-d--V~~~~~~~~~~e~- 177 (338)
T d1vr6a1 116 FLSELGVKVLRGGA-YKP-----RT--SPYSFQ---GLG-EKGLEYLREAADKYGMYVV--T-E--ALGEDDLPKVAEY- 177 (338)
T ss_dssp HHHHTTCCEEECBS-CCC-----CC--STTSCC---CCT-HHHHHHHHHHHHHHTCEEE--E-E--CSSGGGHHHHHHH-
T ss_pred HHHHhCccccccce-ecc-----cc--cccccc---cch-HHHHHHHHHHHhhcCceeE--E-e--ccchhhhhhhhce-
Confidence 99999988777432 111 11 223344 112 344466666654 576433 2 1 1111111111000
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCcc
Q 017492 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAA 248 (370)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d 248 (370)
..+.++ +... ....+.++++-+ ++.||.+|-. .++++ ++.+...|-+
T Consensus 178 -------~DilQI-------------~A~~------~~n~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~ 230 (338)
T d1vr6a1 178 -------ADIIQI-------------GARN------AQNFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNT 230 (338)
T ss_dssp -------CSEEEE-------------CGGG------TTCHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCC
T ss_pred -------eeeEEe-------------chhh------ccCHHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCc
Confidence 000000 0011 124556676654 6899999964 67776 5666779999
Q ss_pred EEEEccCCccCCC-Cc--cchHHHHHHHHHHccCCCcEEEe----cCCCCHHH--HHHHHHhCCCEEEEcHHHHHH-HHh
Q 017492 249 GIIVSNHGARQLD-YV--PATIMALEEVVKATQGRIPVFLD----GGVRRGTD--VFKALALGASGIFIGRPVVYS-LAA 318 (370)
Q Consensus 249 ~I~vs~~gg~~~~-~~--~~~~~~l~~i~~~~~~~ipvi~~----GGI~~~~d--v~kalalGAd~V~igr~~l~~-~~~ 318 (370)
-|++.-.|-+... .. ...+..++.+++.. ..||++| ||-+...- +..|+++|||++++=.-.=-. .-+
T Consensus 231 ~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~Als 308 (338)
T d1vr6a1 231 KIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 308 (338)
T ss_dssp CEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSS
T ss_pred cceeeeccccccccccccchhhcccceeeccc--cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCC
Confidence 9998766643222 11 12444666666553 6899986 66665543 335788999999997611000 001
Q ss_pred cCHHH-HHHHHHHHHHHHHHHHHHcC
Q 017492 319 EGEKG-VRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 319 ~G~~~-v~~~l~~l~~el~~~m~~~G 343 (370)
.|+.. --+.++.|.++++..-...|
T Consensus 309 Dg~q~l~~~~~~~ll~~l~~i~~~vg 334 (338)
T d1vr6a1 309 DGKQSLDFELFKELVQEMKKLADALG 334 (338)
T ss_dssp CGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhc
Confidence 22211 01245666677776666655
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=88.02 E-value=5.9 Score=32.71 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=59.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +..+.+=. ..++++| +.+.+.|+..+-= ...+..+..+.++++.. ++||.
T Consensus 43 di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iEe--------P~~~~~~~~~~~l~~~~--~ipia 112 (227)
T d2mnra1 43 DLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQ 112 (227)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhhhcC--------cccccchhhhHHHHHHc--CCccc
Confidence 456678888876 34554421 2456654 4455667666531 11223566788887765 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGR 310 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr 310 (370)
++-.+.+..+...++..| +|.+++--
T Consensus 113 ~gE~~~~~~~~~~~~~~~~~d~~~~d~ 139 (227)
T d2mnra1 113 MGENWLGPEEMFKALSIGACRLAMPDA 139 (227)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred cCceeEeechhhhhHhcCceeeeeccc
Confidence 999999999999999998 57877754
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=87.30 E-value=3.4 Score=41.19 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=84.7
Q ss_pred HHHHHHHHcCccEEEEccCC-ccCCC---CccchHHHHHHHHHHc-----cCCCcEE-EecCCCCHHHHHHHHHhCCCEE
Q 017492 237 EDARIAVQAGAAGIIVSNHG-ARQLD---YVPATIMALEEVVKAT-----QGRIPVF-LDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~g-g~~~~---~~~~~~~~l~~i~~~~-----~~~ipvi-~~GGI~~~~dv~kalalGAd~V 306 (370)
++|..+++.|+..|++|..+ +...+ ...|.+-++..+..++ +.++-|+ =+|-+|+.-|++-.+-.||++|
T Consensus 155 ~ea~~AV~~G~~ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AV 234 (809)
T d1ofda2 155 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 234 (809)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEeccccccccCCCccchhHHHHHHHHHHHHHHcCCCceeeeeeehHHHHHHHHhHHHHhccHHHH
Confidence 44777899999999999875 22122 1245555555555543 3455554 5678999999998888999999
Q ss_pred EEcHHHH--HHHH---------hc-------CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017492 307 FIGRPVV--YSLA---------AE-------GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 358 (370)
Q Consensus 307 ~igr~~l--~~~~---------~~-------G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~ 358 (370)
.=--++= ..+. .. -.+.+.++.+.+.++|...|..+|.+.++.-++..+.-.
T Consensus 235 nPYLA~eti~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiFEa 304 (809)
T d1ofda2 235 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEA 304 (809)
T ss_dssp ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCEEE
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhccCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhcc
Confidence 7433321 1111 01 135688999999999999999999999999887766543
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=8 Score=32.82 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.9
Q ss_pred HHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 268 MALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 268 ~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+++.++.+... ..+++-.- ..+++++.+.+.+|++++.+|.=
T Consensus 194 ~ai~~v~~~~~~~gk~~g~~--~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 194 KAIQHIFNRASAHGKPSGIL--APVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHHHHHHHHHTTCCEEEE--CCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHHHHHHHHHHHcCCCeEEe--cCCHHHHHHHHHcCCCEEEehHH
Confidence 34555554432 35555433 35899999999999999999984
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.80 E-value=2.1 Score=39.59 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCc------c---CCCCccchH----HHHHHHHHHc--------------
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA------R---QLDYVPATI----MALEEVVKAT-------------- 277 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg------~---~~~~~~~~~----~~l~~i~~~~-------------- 277 (370)
+-+|..-|+.++-.|..+.++|.++|.+|+.+- . ..|.+.-+. +.+.+|...+
T Consensus 63 ~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~ 142 (418)
T d1f61a_ 63 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS 142 (418)
T ss_dssp SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 457777888999999999999999999986320 0 123332222 2333332221
Q ss_pred --cCCCcEEEec--CCCCHHHHHH----HHHhCCCEEEEcH
Q 017492 278 --QGRIPVFLDG--GVRRGTDVFK----ALALGASGIFIGR 310 (370)
Q Consensus 278 --~~~ipvi~~G--GI~~~~dv~k----alalGAd~V~igr 310 (370)
...+|||+|+ |..+...+.+ +..+||.+|.|=-
T Consensus 143 ~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiED 183 (418)
T d1f61a_ 143 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWED 183 (418)
T ss_dssp CSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEec
Confidence 1258999997 6666666553 3447999998865
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=86.75 E-value=4.4 Score=31.06 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc--------CccEEEEccCCccCCCCccchHHHHHHHHHHcc-CCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a--------G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipv 283 (370)
..+.++.+-+..+...-+-...+.++|...++. -.|.|.+.-.- -+...++.+.++++.-. .++||
T Consensus 15 ~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~m-----P~~~G~el~~~ir~~~~~~~iPv 89 (144)
T d1i3ca_ 15 DSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-----PKKDGREVLAEIKQNPDLKRIPV 89 (144)
T ss_dssp HHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-----SSSCHHHHHHHHHHCTTTTTSCE
T ss_pred HHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcc-----ccccchHHHHHHHhCcccCCCeE
Confidence 344565555545544444445677777666543 25777665321 11235678888876422 36999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
|+-.+-.+..+..+++.+||+....= |+
T Consensus 90 i~lT~~~~~~~~~~a~~~Ga~~yl~K-P~ 117 (144)
T d1i3ca_ 90 VVLTTSHNEDDVIASYELHVNCYLTK-SR 117 (144)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEEC-CS
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEC-CC
Confidence 99999999999999999999987654 54
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=0.88 Score=41.28 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=64.3
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
|.++.+-+..+...+.++++.+.++|++++++. ++.. +.+. +..... + ...+..++. .
T Consensus 222 Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~-nt~~-~~~~-~~~~~~--~---------------~~~gg~sG~--~ 279 (367)
T d1d3ga_ 222 AVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT-NTTV-SRPA-GLQGAL--R---------------SETGGLSGK--P 279 (367)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC-CCBS-CCCT-TCCCTT--T---------------TSSSEEEEG--G
T ss_pred ccccccCcccchhhhhhhHHHHHhhhhheeecc-cccc-cccc-cccccc--c---------------ccccccccc--c
Confidence 678888776677788888999999999998864 3221 1110 000000 0 000000110 0
Q ss_pred hhhcCCCCccHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEcc
Q 017492 204 VAGQIDRSLSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+ .......++++++.+ ++||+- .|+.+.+||...+.+|||.|.+..
T Consensus 280 ~-----~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~T 328 (367)
T d1d3ga_ 280 L-----RDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 328 (367)
T ss_dssp G-----HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred c-----hhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhH
Confidence 0 112455677777766 588654 568999999999999999999853
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.45 E-value=1.5 Score=37.60 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++.+.....+.||++|.|-.-. .+=..+++.|..+++.+ ++||+.-==|-+..++.++.++|||+|.+=-.++
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd~----~~F~Gs~~dl~~v~~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 136 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTEE----KYFNGSYETLRKIASSV--SIPILMKDFIVKESQIDDAYNLGADTVLLIVKIL 136 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECCC----TTTCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGS
T ss_pred CHHHHHHHHHhCCCeEEEecCc----cccccchHHHHHHHhcc--ccceeecccccChHHHHHHHHhhcchhhhhhhhc
Confidence 4555445778999999985310 01012567888888877 8999998889999999999999999998765443
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=86.44 E-value=1.8 Score=34.88 Aligned_cols=84 Identities=23% Similarity=0.172 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH---c-cCCCcEEEecCC
Q 017492 216 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---T-QGRIPVFLDGGV 289 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~-~~~ipvi~~GGI 289 (370)
.+...-+..+.-|+.-+. .++++ +..+.+.++|.|.+|..-+. ....++++.+. . ..+++|++ ||+
T Consensus 56 ~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~-------~~~~~~~l~~~L~~~g~~~v~Viv-GG~ 127 (168)
T d7reqa2 56 VIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILITV-GGV 127 (168)
T ss_dssp HHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC-------HHHHHHHHHHHHHHTTCTTSEEEE-EES
T ss_pred HHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc-------chHHHHHHHHHHHhcCCCCeEEEE-eCC
Confidence 344444445777766444 45655 67888999999999975432 22333333332 2 23577765 666
Q ss_pred CCHHHHHHHHHhCCCEEE
Q 017492 290 RRGTDVFKALALGASGIF 307 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~ 307 (370)
--..|..+...+|.+.|.
T Consensus 128 ip~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 128 IPEQDFDELRKDGAVEIY 145 (168)
T ss_dssp CCGGGHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHhCCCCEEE
Confidence 667888888889998864
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=9.2 Score=32.74 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++|+.+.++||.+|++-.- +.+...+|.+.+ ++|+|.-|
T Consensus 163 ~~a~~le~AGaf~ivlE~v----------p~~va~~It~~~--~IPtIGIG 201 (262)
T d1m3ua_ 163 SDALALEAAGAQLLVLECV----------PVELAKRITEAL--AIPVIGIG 201 (262)
T ss_dssp HHHHHHHHHTCCEEEEESC----------CHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHhhcceEEEEecc----------cHHHHHHHHhhh--cceeEeec
Confidence 5678899999999998531 335667777777 89999766
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.15 E-value=0.55 Score=43.03 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+.+..+.++|+|.|+++...|+. ....+.+.++++.+ ++|||+ |++.+++-+. .+ .|||+|-+|
T Consensus 118 ~~r~~~l~~aGvd~ivID~A~Gh~----~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~-~l-~gaD~VkVG 182 (368)
T d2cu0a1 118 IKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFIV-GNIANPKAVD-DL-TFADAVKVG 182 (368)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEEE-EEECCHHHHT-TC-TTSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCcccch----hhhhhhhhhhhhhc--ccceee-ccccCHHHHH-hh-hcCcceeec
Confidence 456777889999999998643431 22445677777655 688887 9999987764 33 699999887
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.05 E-value=8.3 Score=32.01 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.+++..+++++.+++||..-.. .+..+.+.+++.| +|.+.+.-. .-+|......+..+++.. .++++..+..
T Consensus 94 ~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~----~~GGit~~~~i~~~A~~~--gi~v~~h~~~ 167 (243)
T d1r0ma1 94 DDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLKVA----RVGGHAESRRVHDVAQSF--GAPVWCGGML 167 (243)
T ss_dssp TCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCCC
T ss_pred cchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccceecccc----eeccHHHHHHHHHHHHHC--CCceeccccc
Confidence 3678899999999999987764 5788888877765 788877431 112344444455555544 7999998877
Q ss_pred CCHHHHHHHHHhC
Q 017492 290 RRGTDVFKALALG 302 (370)
Q Consensus 290 ~~~~dv~kalalG 302 (370)
.++--....+.+.
T Consensus 168 ~~~i~~~a~~h~~ 180 (243)
T d1r0ma1 168 ESGIGRAHNIHLS 180 (243)
T ss_dssp CCHHHHHHHHHHT
T ss_pred ccchhhhHHHHHH
Confidence 7766665555444
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=85.77 E-value=7.5 Score=33.39 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
..+....+..+++++ =.+.+.+.+..+.+.|++.+.+... -...+..|..+.+ ...||+.+-|..+-.+
T Consensus 93 ~~l~~~~k~~~i~~~-~s~fd~~s~~~~~~~~~~~~KIaS~-------d~~n~~Li~~i~k---~~kpiiiStG~s~~~E 161 (280)
T d2zdra2 93 IKLKEYVESKGMIFI-STPFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS---FGKPIILSTGMNSIES 161 (280)
T ss_dssp HHHHHHHHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCHHH
T ss_pred HHHHHHHHhcCCccc-cccchhhcccccccccccceeccch-------hccccHhhhhhhh---ccCceeecccccchhH
Confidence 334444444566654 2356788899999999999999532 1234556666654 3789999999999999
Q ss_pred HHHHHH----hCCCEEEE
Q 017492 295 VFKALA----LGASGIFI 308 (370)
Q Consensus 295 v~kala----lGAd~V~i 308 (370)
+.+++. .+.+.+.+
T Consensus 162 I~~av~~~~~~~~~~~ll 179 (280)
T d2zdra2 162 IKKSVEIIREAGVPYALL 179 (280)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhhhhhccccceEE
Confidence 999887 36665554
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=1.3 Score=38.21 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.++.++....+.||++|.|-....+ + ...++.|..+++.+ ++||+.-==|-+..++.++-.+|||+|.+=-..
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~~~-F---~Gs~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~ 140 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDEKY-F---QGSFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSV 140 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCSTT-T---CCCTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT
T ss_pred chhHHHHHHHHhccCceEEeccccc-C---CCCHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhh
Confidence 4566666778899999998652110 1 11345677777776 799998888999999999999999999875443
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=85.39 E-value=1 Score=37.33 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=38.6
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
...|+.++++++..++||+.=|..+.+.+..+.++|+++|.+..
T Consensus 139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis 182 (206)
T d1xi3a_ 139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 182 (206)
T ss_dssp CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEEhH
Confidence 35788999999999999988777888999999999999998853
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=85.25 E-value=9.2 Score=31.85 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+=.- .+.++| +.+.+.+...+-= ...+..++.+.++++.. ++||+
T Consensus 48 D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~ipia 117 (244)
T d2chra1 48 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--RVAIM 117 (244)
T ss_dssp HHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEC--------CSCSSCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHHHhhhhHHHHhh--------hhhhccchhhhhhccce--eeeee
Confidence 456788888887 455544321 345554 4445566554421 01123567788888877 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIGRPV 312 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 312 (370)
++--+.+..++..++..| +|.|++.-..
T Consensus 118 ~~E~~~~~~~~~~~i~~~~~d~v~~d~~~ 146 (244)
T d2chra1 118 ADESLSTLASAFDLARDRSVDVFSLKLCN 146 (244)
T ss_dssp ESSSCCSHHHHHHHHTTTCCSEECCCHHH
T ss_pred ecccccccchhhhhhhcceeEEEeecccc
Confidence 999999999999999987 7899888644
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=84.99 E-value=9.3 Score=31.67 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
.+++..+++++.++.||..-.. .++.+...+++.| +|.+.+.-+ .-+|.....-+..+++.. .+++...+-.
T Consensus 94 ~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~----~~GGit~~~ki~~~a~~~--gi~v~~h~~~ 167 (244)
T d1wufa1 94 KDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLA----RVGGMSSALKIAEYCALN--EILVWCGGML 167 (244)
T ss_dssp SCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTG----GGTSHHHHHHHHHHHHHT--TCEEEECCCC
T ss_pred cchhhhhccccccccccccCccccchhhhhhhccccccceeecccc----cccchhhHHHHHHHHHHc--CCEEecCCCC
Confidence 3678899999999999987765 6788888888887 688877432 012233333344444443 7888876656
Q ss_pred CCHHHHHHHHHh
Q 017492 290 RRGTDVFKALAL 301 (370)
Q Consensus 290 ~~~~dv~kalal 301 (370)
.++-....++.+
T Consensus 168 ~~~i~~~~~~~~ 179 (244)
T d1wufa1 168 EAGVGRAHNIAL 179 (244)
T ss_dssp CCHHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 666555554443
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=84.77 E-value=8.3 Score=33.40 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=53.7
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.|..+....+..+++++ =.+.+.+.+..+.+.|++.+.+... -......|.++.+ ...||+.+-|-.+.
T Consensus 89 ~~~~l~~~~k~~gi~~~-~s~fd~~s~~~l~~l~~~~iKIaS~-------d~~n~~Li~~i~k---~~kpviistG~~~~ 157 (295)
T d1vlia2 89 WILPLLDYCREKQVIFL-STVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVAR---LNRPMIFSTAGAEI 157 (295)
T ss_dssp GHHHHHHHHHHTTCEEE-CBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCH
T ss_pred HhhhHHHHhhhccccee-eecccceeeeeecccCcceeEeccc-------ccccHHHHHHHHh---cCCchheechhhhh
Confidence 45555555555676654 3356788899999999999999531 1234556666554 36899998888998
Q ss_pred HHHHHHHH
Q 017492 293 TDVFKALA 300 (370)
Q Consensus 293 ~dv~kala 300 (370)
.++.+++.
T Consensus 158 ~ei~~~~~ 165 (295)
T d1vlia2 158 SDVHEAWR 165 (295)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 88877765
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=84.76 E-value=5.9 Score=29.16 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHH-HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a-~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.+.++.+-+.++.-++ ....+.++| ..+.+.-.|.|.+.-+- .+...++.+.++++. ..++||++-.+-.+.
T Consensus 14 ~~~l~~~L~~~g~~v~-~~a~~~~~al~~~~~~~~dliilD~~m-----p~~~G~e~~~~ir~~-~~~~pvi~ls~~~~~ 86 (118)
T d1u0sy_ 14 RMMLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITM-----PEMNGIDAIKEIMKI-DPNAKIIVCSAMGQQ 86 (118)
T ss_dssp HHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSC-----GGGCHHHHHHHHHHH-CTTCCEEEEECTTCH
T ss_pred HHHHHHHHHHcCCceE-EEECCHHHHHHHHHhccCCEEEEecCC-----CCCCHHHHHHHHHHh-CCCCcEEEEEccCCH
Confidence 3455555566676553 234566665 45566788998886431 113466788888765 357999999999999
Q ss_pred HHHHHHHHhCCCEEEEcHHH
Q 017492 293 TDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~ 312 (370)
..+.+++.+||+.... .|+
T Consensus 87 ~~~~~a~~~Ga~~yl~-KP~ 105 (118)
T d1u0sy_ 87 AMVIEAIKAGAKDFIV-KPF 105 (118)
T ss_dssp HHHHHHHHTTCCEEEE-SSC
T ss_pred HHHHHHHHcCCCEEEE-CCC
Confidence 9999999999998744 675
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=84.70 E-value=11 Score=32.18 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=98.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccC-C-CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~-~-~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-..-.+.+.-...++-..+.|+...+ + ++.+.+.+|.. +.. + .+.+...- ....+..
T Consensus 7 ~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~~ 85 (292)
T d2a6na1 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEA 85 (292)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeEECCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHHH
Confidence 5556666433323333334566666677876433 2 33446776632 221 2 24444432 3445666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|+++|++++.+. .|... + . ..+-..+..+
T Consensus 86 i~~~~~a~~~Gad~~~~~--pP~~~------------~--~-----------------------------~~~~i~~~f~ 120 (292)
T d2a6na1 86 ISLTQRFNDSGIVGCLTV--TPYYN------------R--P-----------------------------SQEGLYQHFK 120 (292)
T ss_dssp HHHHHTTTTSSCCEEEEE--CCCSS------------C--C-----------------------------CHHHHHHHHH
T ss_pred HHHhccHHhcCCcceecc--CCCCC------------C--C-----------------------------CHHHHHHHHH
Confidence 677788888999998875 23320 0 0 0001244567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.+.+.+++||++=.. .+++...++.+. .+-+|.-+. ........+.+..+++..++ .|
T Consensus 121 ~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~~pnv~giK~~~----------~~~~~~~~~~~~~~~~~~~~-~g--- 186 (292)
T d2a6na1 121 AIAEHTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEAT----------GNLTRVNQIKELVSDDFVLL-SG--- 186 (292)
T ss_dssp HHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCTTHHHHHHTTSCTTSEEE-EC---
T ss_pred HHhhccCCcEEEEEeccccCCccCHHHHHHHhcCCCEEEEEecc----------CcchhhhhhhhhcCCccEEe-ec---
Confidence 778888999987653 467777777654 333333211 11223333333343344443 34
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.......+.+||++.+.+...
T Consensus 187 ~~~~~~~~~~~G~~G~i~~~~~ 208 (292)
T d2a6na1 187 DDASALDFMQLGGHGVISVTAN 208 (292)
T ss_dssp CGGGHHHHHHTTCCEEEESGGG
T ss_pred chhhhhhHhhCCceEEEeecch
Confidence 2355677888999999998744
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.12 E-value=6.4 Score=29.11 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHH-HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~-a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+-+..+.--++....+.++|.. +.+...|.|.+.-+-. +...++.+.++++......||++..+-.+..
T Consensus 15 ~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~~ 89 (123)
T d1dz3a_ 15 SLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERIRAGFEHQPNVIMLTAFGQED 89 (123)
T ss_dssp HHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHHHHHCSSCCEEEEEEETTCHH
T ss_pred HHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCCCCeEEEEECcCCHH
Confidence 344444443332233455567777655 4556789888865321 1245678888876554456788888889999
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
+..+++.+||+.... .|+
T Consensus 90 ~~~~a~~~Ga~~~l~-KP~ 107 (123)
T d1dz3a_ 90 VTKKAVELGASYFIL-KPF 107 (123)
T ss_dssp HHHHHHHTTCEEEEE-CSS
T ss_pred HHHHHHHCCCCEEEE-CCC
Confidence 999999999998644 564
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=83.91 E-value=4.1 Score=34.79 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHcCccEEEEcc-CCccCCCCccchHHHHHHHHHHcc-CC-CcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GR-IPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~-~~-ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
..++..++.+..+|.|+|.+.. || +-.++.+..+..++. .. .|++=.- -.+...+.++|.+||++|++=
T Consensus 24 ~~~p~~~ei~a~~G~Dfv~iD~EHg-------~~~~~~~~~~i~a~~~~g~~~~VRvp-~~~~~~i~~~LD~Ga~GIivP 95 (253)
T d1dxea_ 24 LSNPISTEVLGLAGFDWLVLDGEHA-------PNDISTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYNFLIP 95 (253)
T ss_dssp SCSHHHHHHHTTSCCSEEEEESSSS-------SCCHHHHHHHHHHTTTCSSEEEEECS-SSCHHHHHHHHHTTCCEEEES
T ss_pred CCCHHHHHHHHcCCCCEEEEecccC-------CCChhHHHHHHHHHhccCCCceecCC-CCCHHHHHHHHhcCccEEEec
Confidence 3678889999999999999986 44 334455555555442 23 3444444 368899999999999999885
Q ss_pred H
Q 017492 310 R 310 (370)
Q Consensus 310 r 310 (370)
.
T Consensus 96 ~ 96 (253)
T d1dxea_ 96 F 96 (253)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=83.72 E-value=4.6 Score=33.78 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcC-ccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG-~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
-+++.++++++.+++||..-.. .+.++...+++.| +|.+.+.- .|| ......+..+++.. ++++...+
T Consensus 100 ~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GG------it~~~~i~~~a~~~--gi~~~~~~ 171 (243)
T d1nu5a1 100 ANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGG------IANTLKVAAVAEAA--GISSYGGT 171 (243)
T ss_dssp TCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTS------HHHHHHHHHHHHHH--TCEEEECC
T ss_pred ccccccccchhccccccccccccccchhhhhccccccccccccccccccc------hHHHHHHHHHHHHc--CCCccccc
Confidence 3688899999999999988765 6788999888887 67877642 233 33444444444444 78888776
Q ss_pred CCCCHHHHHHHHHhC
Q 017492 288 GVRRGTDVFKALALG 302 (370)
Q Consensus 288 GI~~~~dv~kalalG 302 (370)
...++--..-.+.++
T Consensus 172 ~~~s~i~~~a~~h~~ 186 (243)
T d1nu5a1 172 MLDSTVGTAAALHVY 186 (243)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHH
Confidence 666665555554444
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=2.7 Score=37.27 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=62.7
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
|.++.|.+..+.+...+.++.+.+.|++.+... +... + +..+. .. ...... +..++ ..
T Consensus 213 Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~i-nt~~-~-~~~~~--~~--~~~~~~-------------GGlSG--~~ 270 (336)
T d1f76a_ 213 PIAVKIAPDLSEEELIQVADSLVRHNIDGVIAT-NTTL-D-RSLVQ--GM--KNCDQT-------------GGLSG--RP 270 (336)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHHTTCSEEEEC-CCBC-C-CTTST--TS--TTTTCS-------------SEEEE--GG
T ss_pred CcccccchhhhhhhhhhhHHHHHhcCccchhhh-hhhh-c-ccccc--cc--cccccc-------------ccccc--ch
Confidence 467777666667777888888888898887654 2211 1 00000 00 000000 00011 01
Q ss_pred hhhcCCCCccHHHHHHHHHhc--CCcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 204 VAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+ .....+.++++++.+ ++||+ +.||.+.+|+...+.+||+.|.|..
T Consensus 271 i-----~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~T 319 (336)
T d1f76a_ 271 L-----QLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYS 319 (336)
T ss_dssp G-----HHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred h-----HHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHH
Confidence 1 123566788888887 68865 4568999999999999999999853
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.10 E-value=13 Score=31.78 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=99.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|-++.|+.-..-.+.++-....+-+-+.|+...+ |+..+.+.+|.. +... .+.+.+.. ..+.+.+
T Consensus 13 ~a~~TPf~~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~-~~s~~~~ 91 (296)
T d1xxxa1 13 TAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHS 91 (296)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHH
T ss_pred eeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccc-cchhHHH
Confidence 4455666433333334445677777778876433 233456777642 1222 34555543 3456777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++.+.|++.|++++.+. .|... .. +.+-..+..+
T Consensus 92 i~~a~~a~~~Gad~v~i~--~P~~~----------------~~---------------------------~~~~l~~~~~ 126 (296)
T d1xxxa1 92 IRLAKACAAEGAHGLLVV--TPYYS----------------KP---------------------------PQRGLQAHFT 126 (296)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS----------------CC---------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEE--eccCC----------------CC---------------------------CHHHHHHHHH
Confidence 889999999999999875 23210 00 0001344567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.+.+.+++||++=.. .+++..+++.+.. +-+|.-+ .+.+..+.+.... ...-+ ..|+
T Consensus 127 ~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~~p~i~giK~~----------s~d~~~~~~~~~~--~~~~~-~~g~-- 191 (296)
T d1xxxa1 127 AVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDA----------KADLHSGAQIMAD--TGLAY-YSGD-- 191 (296)
T ss_dssp HHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEEC----------SCCHHHHHHHHHH--HCCEE-EECS--
T ss_pred HHHHhcCCCEEEEECccccCCCCCHHHHHHhcCCCCeeeeccc----------cccHHHHHhhhcc--ccccc-ccCc--
Confidence 777888999987532 5677777776542 2222221 1123333333222 13333 3332
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
..-++..+.+||++.+.|...+
T Consensus 192 -~~~~~~~~~~G~~G~is~~~n~ 213 (296)
T d1xxxa1 192 -DALNLPWLAMGATGFISVIAHL 213 (296)
T ss_dssp -GGGHHHHHHHTCCEEEESTHHH
T ss_pred -ccccchhhhcccccccchhccc
Confidence 2346778889999999997644
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=82.89 E-value=6.2 Score=30.00 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=61.4
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc--------CccEEEEccCCccCCCCccchHHHHHHHHHHcc-CCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a--------G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipv 283 (370)
..+.++..-+..+...-+-.+.+.++|...++. ..|.|.+.-+- -+...++.+.++++.-. .++||
T Consensus 14 ~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~m-----P~~dG~el~~~ir~~~~~~~iPv 88 (140)
T d1k68a_ 14 DIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNL-----PKKDGREVLAEIKSDPTLKRIPV 88 (140)
T ss_dssp HHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-----SSSCHHHHHHHHHHSTTGGGSCE
T ss_pred HHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeecc-----ccccChHHHHHHHhCcccCCCcE
Confidence 344455544444554444556778887665532 25677765431 11235677888776321 26899
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
|+-.+-.+..++.+++.+||+... -.|+
T Consensus 89 I~ls~~~~~~~~~~a~~~Ga~~yl-~KP~ 116 (140)
T d1k68a_ 89 VVLSTSINEDDIFHSYDLHVNCYI-TKSA 116 (140)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEE-ECCS
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEE-ECCC
Confidence 999999999999999999999864 4564
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=82.76 E-value=1.5 Score=37.82 Aligned_cols=73 Identities=16% Similarity=0.048 Sum_probs=52.8
Q ss_pred CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++.+.....+.||++|.|-.--. ..+ .+++.|..+++.+ ++||+.-==|-++.++.++..+|||+|.+=-.++
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~~--~F~--Gs~~~l~~vr~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 134 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEKH--YFK--GDPAFVRAARNLT--CRPILAKDFYIDTVQVKLASSVGADAILIIARIL 134 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCS--SSC--CCTHHHHHHHTTC--CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGS
T ss_pred cHHHHHHHHhcCCcceEEecccC--CCC--CCHHHHHHHhhcc--cCchhhhhhhhCHHHHHHHHhhccceEEeecccc
Confidence 45554455578999999864210 001 1345677777665 8999998889999999999999999998765544
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=82.68 E-value=1.2 Score=39.28 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhcC-CcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITK-LPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.+.++++.++ .||+ +.|+.+.+||...+.+||+.|.+..
T Consensus 229 al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~T 272 (312)
T d2b4ga1 229 ALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGT 272 (312)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESH
T ss_pred hhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeeh
Confidence 5667888888874 4443 3346899999999999999999854
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.65 E-value=2.4 Score=37.78 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...++++..+++|.+.+.++...... ..|.. . .. ......
T Consensus 226 ~~~~~~~~~~~l~~~g~d~~~~~~g~~~~-----------~~~~~-~------------------------~~-~~~~~~ 268 (330)
T d1ps9a1 226 TFAETVELAQAIEAAGATIINTGIGWHEA-----------RIPTI-A------------------------TP-VPRGAF 268 (330)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECBTTC-----------SSCSS-S------------------------TT-SCTTTT
T ss_pred CHHHHHHHHHHHHHhhhhhhhcccccccc-----------ccccc-C------------------------CC-CcchhH
Confidence 45667788888888999998877542210 00100 0 00 011123
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
....+++|+.+++||++-+ +.+++.|..+++.| +|.|-+
T Consensus 269 ~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 269 SWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSM 309 (330)
T ss_dssp HHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHh
Confidence 4467889999999998766 46899999999988 998876
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.52 E-value=2.3 Score=37.92 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=35.2
Q ss_pred CccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 211 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
...++..+.+|+.+++||+.=+ +.+++++..+++.| +|.|-+
T Consensus 277 ~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~ 320 (340)
T d1djqa1 277 GHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGC 320 (340)
T ss_dssp TTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEE
T ss_pred cccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhh
Confidence 3456778899999999999655 56899999999998 999877
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=82.30 E-value=7.1 Score=29.46 Aligned_cols=89 Identities=9% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHH-HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~-~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+-+..+.-|. ...+.++|..+. +...|.|.+.-.- .+...++.+..+++. ..++|||+..|-.+..
T Consensus 14 ~~l~~~L~~~g~~v~--~a~~~~eAl~~l~~~~~dlvilD~~m-----p~~~G~e~~~~lr~~-~~~~piI~lT~~~~~~ 85 (137)
T d1ny5a1 14 GLLEEYLSMKGIKVE--SAERGKEAYKLLSEKHFNVVLLDLLL-----PDVNGLEILKWIKER-SPETEVIVITGHGTIK 85 (137)
T ss_dssp HHHHHHHHHHTCEEE--EESSHHHHHHHHHHSCCSEEEEESBC-----SSSBHHHHHHHHHHH-CTTSEEEEEEETTCHH
T ss_pred HHHHHHHHHCCCEEE--EECCHHHHHHHhhccccccchHHHhh-----hhhhHHHHHHHHHHh-CCCCCEEEEECCCCHH
Confidence 345555555565543 467888876655 5679988886431 112456778877764 3479999999999999
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
++.+++.+||+.... .|+
T Consensus 86 ~~~~a~~~Ga~dyl~-KP~ 103 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLT-KPC 103 (137)
T ss_dssp HHHHHHTTTCCEEEE-ESC
T ss_pred HHHHHHHcCCCEEEe-CCC
Confidence 999999999987654 565
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=82.02 E-value=5 Score=33.86 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=47.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kal----alGAd~V~ig 309 (370)
.+++.+++.|||-|.+--.-+... ...++.+.++.+.. +.-+.||..-+.-+.+.+.++- ..|||+|--+
T Consensus 92 ~E~~~Ai~~GAdEID~Vin~~~~~---~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTS 168 (234)
T d1n7ka_ 92 VEAQTVLEAGATELDVVPHLSLGP---EAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTS 168 (234)
T ss_dssp HHHHHHHHHTCCEEEECCCGGGCH---HHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESC
T ss_pred HHHHHHHHcCCCeEEEEechhhhh---hhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeec
Confidence 568889999999999753211100 11233344444332 2247899999999988887754 4799999877
Q ss_pred HHH
Q 017492 310 RPV 312 (370)
Q Consensus 310 r~~ 312 (370)
+.|
T Consensus 169 TG~ 171 (234)
T d1n7ka_ 169 TGV 171 (234)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=8.4 Score=28.36 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHH-HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a-~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.+...-+.++.- +....+.++| ..+.+.-.|.|.+.-... +...++.+..+++. .++||++-.|-.+..
T Consensus 16 ~~l~~~L~~~g~~--v~~a~~~~~al~~l~~~~~dlii~D~~mp-----~~~G~~~~~~~r~~--~~~pii~lt~~~~~~ 86 (121)
T d1xhfa1 16 NTLKSIFEAEGYD--VFEATDGAEMHQILSEYDINLVIMDINLP-----GKNGLLLARELREQ--ANVALMFLTGRDNEV 86 (121)
T ss_dssp HHHHHHHHTTTCE--EEEESSHHHHHHHHHHSCCSEEEECSSCS-----SSCHHHHHHHHHHH--CCCEEEEEESCCSHH
T ss_pred HHHHHHHHHCCCE--EEEECChHHHHHHHHhcCCCEEEeecccC-----CccCcHHHHHHHhc--CCCcEEEEECCCCHH
Confidence 4455554555654 3456788777 455567788888864311 12345677776664 379999999999999
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
+..+++.+||+.... .||
T Consensus 87 ~~~~a~~~Ga~dyl~-KP~ 104 (121)
T d1xhfa1 87 DKILGLEIGADDYIT-KPF 104 (121)
T ss_dssp HHHHHHHHTCSEEEE-SSC
T ss_pred HHHHHHHcCCCEEEe-CCC
Confidence 999999999998654 465
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=80.69 E-value=10 Score=31.57 Aligned_cols=119 Identities=8% Similarity=-0.005 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.+++..+.||+++=+.++.. +.+.
T Consensus 19 ~~~~~~~~~~~~~~~~Gf~~~Kikvg~~------------------------------------------------~~~~ 50 (247)
T d1tzza1 19 KGLSMLRGEMRGYLDRGYNVVKMKIGGA------------------------------------------------PIEE 50 (247)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSSS------------------------------------------------CHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCC------------------------------------------------CHHH
Confidence 4677788888888889999887654310 1112
Q ss_pred cHHHHHHHHHhc--CCcEEEEe--cCCHHHHH----HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~--v~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.. +..|.+=. ..+.++|. .+.+.+...+-= ...+..++.+.++++.. .+||.
T Consensus 51 di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wiEe--------P~~~~d~~~~~~l~~~~--~ipia 120 (247)
T d1tzza1 51 DRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE--------VGDPLDYALQAALAEFY--PGPMA 120 (247)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHTTTC--CSCEE
T ss_pred HHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhhcc--------ccccccchhhhhhhhcc--ccccc
Confidence 455677888776 34444332 14555543 344455544420 01122456677776654 79999
Q ss_pred EecCCCCHHHHHHHHHhCC-----CEEEEc
Q 017492 285 LDGGVRRGTDVFKALALGA-----SGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGA-----d~V~ig 309 (370)
++-.+.+..|....+..|| |.+++.
T Consensus 121 ~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d 150 (247)
T d1tzza1 121 TGENLFSHQDARNLLRYGGMRPDRDWLQFD 150 (247)
T ss_dssp ECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred cchhhhhhHHHHHHHHccCCcCcceeEeec
Confidence 9999999999999999987 677774
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=80.65 E-value=2.6 Score=36.73 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.+.++++.+ ++||+. .|+.+.+|+...+.+|||.|.+..
T Consensus 228 al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~t 272 (311)
T d1juba_ 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeH
Confidence 456678888877 488665 457999999999999999999853
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=80.10 E-value=0.82 Score=40.11 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+|+.++++++.+++||+. .++.+.+|+...+.+|||+|.+.
T Consensus 228 ~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig 270 (311)
T d1ep3a_ 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEec
Confidence 4788999999999999875 45799999999999999999884
|