Citrus Sinensis ID: 017513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHccccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHcccccccccccccccccccccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHccccEEHcHHHHHHHccccEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccccccccEEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccHHHcc
Coil and Loop (DISEMBL)
MWGIIRQKVaagggspvarirpVVSNLRNYSSAVKQMMVREALNSALdeemsadpkvfLMGEEVGEYQGAYKISKGLlekygpervldtpiteagftgIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAaksnymssgqisvpivfrgpngaaagvgaqhSHCYAAWyasvpglkvlspyssEDARGLLKaairdpdpvvflenellygesfpvsaevldssfclpigkakieregkdvTITAFSKIVGLSLKAAEILAKEGISAEVINlrsirpldrstinasvrktnrlvtveegfpqhgvgAEICASVIEEsfgyldapveriagadvpmpyaanlermavPQVEDIVRAAKRACyrsvpmaaaa
Flexible Loop (DISEMBL)
MWGIIRQKvaagggspvarirpvvsNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGkakieregkdvtITAFSKIVGLSLKAAEILAKEgisaevinlrsirpldrstinasvrktnrlvtveegfpqhgvGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA
Low Complexity Region (SEG)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA
Disordered region (IsUnstruct)
***IIR**VA******VARIRPVVSNLRNY*************************KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR********
Disordered Region (DISOPRED)
************************************MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS*P*****
Disordered Region (DISEMBL)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA
Disordered Region (DISPRO)
*********************************VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
Q6Z1G7	374	Pyruvate dehydrogenase E1	yes	no	0.908	0.898	0.919	0.0
Q38799	363	Pyruvate dehydrogenase E1	yes	no	0.978	0.997	0.848	0.0
Q0J0H4	376	Pyruvate dehydrogenase E1	no	no	1.0	0.984	0.835	0.0
P52904	359	Pyruvate dehydrogenase E1	N/A	no	0.970	1.0	0.856	1e-179
Q86HX0	356	Pyruvate dehydrogenase E1	yes	no	0.943	0.980	0.630	1e-130
P32473	366	Pyruvate dehydrogenase E1	yes	no	0.924	0.934	0.634	1e-124
Q09171	366	Pyruvate dehydrogenase E1	yes	no	0.894	0.904	0.636	1e-123
P11966	359	Pyruvate dehydrogenase E1	yes	no	0.883	0.910	0.640	1e-121
Q9R9N4	460	Pyruvate dehydrogenase E1	yes	no	0.872	0.702	0.628	1e-121
Q9D051	359	Pyruvate dehydrogenase E1	yes	no	0.881	0.908	0.633	1e-120

>sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2 SV=1

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/336 (91%), Positives = 327/336 (97%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
           K+M VREALNSALDEEMSADP VFLMGEEVGEYQGAYKISKGLL+KYGP+RVLDTPITEA
Sbjct: 39  KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEA 98

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GFTGIGVGAAY GL+PVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGA
Sbjct: 99  GFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGA 158

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AAGVGAQHS CYAAWYA VPGLKVL+PYS+EDARGLLKAAIRDPDPVVFLENELLYGESF
Sbjct: 159 AAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESF 218

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
           PVSAEVLDSSFCLPIGKAKIE+EGKDVTITAFSK+VG +L+AAEIL+KEGISAEVINLRS
Sbjct: 219 PVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRS 278

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334
           IRPLDR+TINASVRKTNRLVT+EEGFPQHGVGAEIC SV+E+SF YLDAPVERIAGADVP
Sbjct: 279 IRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVP 338

Query: 335 MPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 370
           MPYAANLERMAVPQVEDIVRAAKRACYR+VPMAA A
Sbjct: 339 MPYAANLERMAVPQVEDIVRAAKRACYRAVPMAATA 374

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1

>sp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/363 (84%), Positives = 337/363 (92%), Gaps = 1/363 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct: 1   MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct: 60  GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct: 120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct: 180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct: 240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRAC
Sbjct: 300 PQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRAC 359

Query: 361 YRS 363
           YRS
Sbjct: 360 YRS 362

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q0J0H4|ODPB2_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0509200 PE=2 SV=1

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/376 (83%), Positives = 341/376 (90%), Gaps = 6/376 (1%)

Query: 1   MWGIIRQKVAAGG--GSPVARIRPVVSNLRNYSSAV----KQMMVREALNSALDEEMSAD 54
           M G  R+++ +G   G  + R+RP  +   + + A     K+M VREALNSALDEEMSAD
Sbjct: 1   MLGAARRQLGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSAD 60

Query: 55  PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114
           P VFLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGI VGAAY GL+PVVEF
Sbjct: 61  PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120

Query: 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVP 174
           MTFNFSMQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWYA VP
Sbjct: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180

Query: 175 GLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKI 234
           GLKVL PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+SAEVLDSSF LPIGKAKI
Sbjct: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240

Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294
           EREGKDVTITA+SK+VG +L+AA+IL+KEGISAEVINLRSIRPLDR+TINASVRKTNRLV
Sbjct: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300

Query: 295 TVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 354
           T+EE FPQHG+GAEIC SV+EESF YLDAPVERIAGADVPMPYAANLERMAVPQV+DIVR
Sbjct: 301 TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR 360

Query: 355 AAKRACYRSVPMAAAA 370
           AAKRACYR+VPMAA A
Sbjct: 361 AAKRACYRAVPMAATA 376

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1

 Score =  628 bits (1619), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/370 (85%), Positives = 331/370 (89%), Gaps = 11/370 (2%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           IRP  S  R   S+ KQM VR+ALNSALD EMSAD KVFLM
Sbjct: 1   MLGVIRNKT----------IRPSFSAFRF-FSSAKQMTVRDALNSALDVEMSADSKVFLM 49

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 50  GEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 109

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRG NG AAGVGAQHSHCYA+WY S PGLKVL 
Sbjct: 110 MQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLV 169

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           P+S+EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKD
Sbjct: 170 PHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKD 229

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGF
Sbjct: 230 VTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGF 289

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEIC SVIEESFGYLDA VERI GADVPMPYA NLER+ VP VEDIVRAAKRAC
Sbjct: 290 PQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRAC 349

Query: 361 YRSVPMAAAA 370
           +RSVP+AAAA
Sbjct: 350 HRSVPLAAAA 359

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/352 (63%), Positives = 284/352 (80%), Gaps = 3/352 (0%)

Query: 15  SPVARIRP-VVSNLR--NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
           S + +I+P ++ N R    + A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAY
Sbjct: 4   SILKKIQPSLLVNFRIITRTYATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAY 63

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+
Sbjct: 64  KITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSS 123

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK++YMS G++  PIV+RGPNG    VGAQHS C+AAWY SVPGLKV++P+S+ D RGLL
Sbjct: 124 AKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLL 183

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           K+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV 
Sbjct: 184 KSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVS 243

Query: 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICA 311
             ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A
Sbjct: 244 NCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISA 303

Query: 312 SVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 363
            ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR   R+
Sbjct: 304 LMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDB1 PE=1 SV=2

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 264/345 (76%), Gaps = 3/345 (0%)

Query: 15  SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS 74
           +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+S
Sbjct: 17  APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVS 76

Query: 75  KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS 134
           KGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK+
Sbjct: 77  KGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKT 136

Query: 135 NYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194
           +YMS G     +VFRGPNGAA GVGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAA
Sbjct: 137 HYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAA 196

Query: 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
           IRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL
Sbjct: 197 IRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSL 255

Query: 255 KAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313
           +AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V
Sbjct: 256 EAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQV 315

Query: 314 IE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 357
           +E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct: 316 MESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdb1 PE=4 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTP
Sbjct: 32  SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTP 91

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           ITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFRG
Sbjct: 92  ITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRG 151

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           PNG AA V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LY
Sbjct: 152 PNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211

Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEV 269
           G++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEV
Sbjct: 212 GKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEV 271

Query: 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERI 328
           INLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER+
Sbjct: 272 INLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERV 331

Query: 329 AGADVPMPYAANLERMAVPQVEDIVRAAKRACY 361
           + ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct: 332 SMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/328 (64%), Positives = 256/328 (78%), Gaps = 1/328 (0%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+
Sbjct: 29  AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 88

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G  SVPIVFRGPN
Sbjct: 89  EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPN 148

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           GA+AGV AQHS C+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV LENEL+YG 
Sbjct: 149 GASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGV 208

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
            F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINL
Sbjct: 209 PFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINL 268

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGA 331
           R+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GA
Sbjct: 269 RTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGA 328

Query: 332 DVPMPYAANLERMAVPQVEDIVRAAKRA 359
           DVPMPYA  LE  +VPQV+DI+ A K+ 
Sbjct: 329 DVPMPYAKILEDNSVPQVKDIIFAIKKT 356

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti (strain 1021) GN=pdhB PE=3 SV=2

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/326 (62%), Positives = 257/326 (78%), Gaps = 3/326 (0%)

Query: 37  MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96
           M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF
Sbjct: 138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGF 197

Query: 97  TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
            G+GVGAA  GL+P+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGP+GAAA
Sbjct: 198 AGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAA 257

Query: 157 GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV 216
            V AQHS CYAAWY+ +PGLKV+ PY++ DA+GLLKAAIRDP+PV+FLENE+LYG+SF V
Sbjct: 258 RVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEV 317

Query: 217 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR 276
               LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IR
Sbjct: 318 PK--LD-DFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIR 374

Query: 277 PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP 336
           P+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMP
Sbjct: 375 PMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMP 434

Query: 337 YAANLERMAVPQVEDIVRAAKRACYR 362
           YAANLE++A+P V ++V A K  CY+
Sbjct: 435 YAANLEKLALPNVAEVVDAVKAVCYK 460

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 257/327 (78%), Gaps = 1/327 (0%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+
Sbjct: 29  AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 88

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPN
Sbjct: 89  EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPN 148

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           GA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG 
Sbjct: 149 GASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGV 208

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
           +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINL
Sbjct: 209 AFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINL 268

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGA 331
           R+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GA
Sbjct: 269 RTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGA 328

Query: 332 DVPMPYAANLERMAVPQVEDIVRAAKR 358
           DVPMPYA  LE  +VPQV+DI+ A K+
Sbjct: 329 DVPMPYAKVLEDNSVPQVKDIIFAVKK 355

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
118481185	373	unknown [Populus trichocarpa]	1.0	0.991	0.908	0.0
296088722	429	unnamed protein product [Vitis vinifera]	0.991	0.855	0.891	0.0
224053535	358	predicted protein [Populus trichocarpa]	0.967	1.0	0.912	0.0
225425166	367	PREDICTED: pyruvate dehydrogenase E1 com	0.991	1.0	0.891	0.0
224075515	351	predicted protein [Populus trichocarpa]	0.948	1.0	0.934	0.0
449445580	372	PREDICTED: pyruvate dehydrogenase E1 com	0.994	0.989	0.883	0.0
449519858	372	PREDICTED: LOW QUALITY PROTEIN: pyruvate	0.994	0.989	0.883	0.0
255543140	368	pyruvate dehydrogenase, putative [Ricinu	0.991	0.997	0.897	0.0
357501349	361	Pyruvate dehydrogenase E1 component subu	0.975	1.0	0.889	0.0
363807782	360	uncharacterized protein LOC100805001 [Gl	0.972	1.0	0.889	0.0

>gi|118481185|gb|ABK92544.1| unknown [Populus trichocarpa]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/373 (90%), Positives = 358/373 (95%), Gaps = 3/373 (0%)

Query: 1   MWGIIRQKVAAGGGSPVA---RIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKV 57
           M+GI+RQK++AGG   +A   RIRP VS  R YSSA K++ VREALNSALDEEMSADPKV
Sbjct: 1   MFGIVRQKISAGGSPLLAFGQRIRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKV 60

Query: 58  FLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117
           FLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTF
Sbjct: 61  FLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTF 120

Query: 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK 177
           NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLK
Sbjct: 121 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLK 180

Query: 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE 237
           VL+PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIERE
Sbjct: 181 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIERE 240

Query: 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297
           GKDVTITAFSK+VG +LKAAEILAKEGI+AEVINLRSIRPLDR TINASVRKTNRLVTVE
Sbjct: 241 GKDVTITAFSKMVGYALKAAEILAKEGINAEVINLRSIRPLDRDTINASVRKTNRLVTVE 300

Query: 298 EGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 357
           EGFPQHGVGAEICASV+EESFGYLDAPVERIAGADVPMPYAANLER+AVPQVEDIVRAAK
Sbjct: 301 EGFPQHGVGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERLAVPQVEDIVRAAK 360

Query: 358 RACYRSVPMAAAA 370
           RACYRSVPMAAAA
Sbjct: 361 RACYRSVPMAAAA 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088722|emb|CBI38172.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/370 (89%), Positives = 346/370 (93%), Gaps = 3/370 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+ +KV    G  + RIRP V  LRNYSSA KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 63  MLGIVSRKVL---GQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLM 119

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 120 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 179

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKVLS
Sbjct: 180 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLS 239

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPV+FLENELLYGESFP+SAEVLDSSFCLPIGKAKIEREG+D
Sbjct: 240 PYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRD 299

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAA+ILAK+GISAE+INLRSIRPLD  TINASVRKTNRLVTVEEGF
Sbjct: 300 VTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGF 359

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEIC +V+EESFGYLDAPVERIAGADVPMPYAANLERMAVPQ+EDIVRAAKRAC
Sbjct: 360 PQHGVGAEICMAVVEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRAC 419

Query: 361 YRSVPMAAAA 370
           YRS  MAA A
Sbjct: 420 YRSTAMAATA 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053535|ref|XP_002297861.1| predicted protein [Populus trichocarpa] gi|222845119|gb|EEE82666.1| predicted protein [Populus trichocarpa]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/364 (91%), Positives = 345/364 (94%), Gaps = 6/364 (1%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GIIRQK          RIRP VS  R YSSA K+M VREALNSALDEEMSADPKVFLM
Sbjct: 1   MLGIIRQKAFG------QRIRPAVSAWRGYSSAAKEMTVREALNSALDEEMSADPKVFLM 54

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTFNFS
Sbjct: 55  GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTFNFS 114

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHSHCYAAWYAS PGLKVL+
Sbjct: 115 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCPGLKVLA 174

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFCLPIGKAKIE+EGKD
Sbjct: 175 PYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCLPIGKAKIEKEGKD 234

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAEILAKEGISAEVINLRSIRPLDR+TINASVRKTNRLVTVEEGF
Sbjct: 235 VTITAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRNTINASVRKTNRLVTVEEGF 294

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEICASV+EESFGYLDAPVERIAGADVPMPYAANLER+AVPQVEDIVRAAKRAC
Sbjct: 295 PQHGVGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERLAVPQVEDIVRAAKRAC 354

Query: 361 YRSV 364
           YRSV
Sbjct: 355 YRSV 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425166|ref|XP_002264210.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 1 [Vitis vinifera] gi|359473798|ref|XP_003631360.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 2 [Vitis vinifera]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/370 (89%), Positives = 346/370 (93%), Gaps = 3/370 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+ +KV    G  + RIRP V  LRNYSSA KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 1   MLGIVSRKVL---GQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLM 57

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 58  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 117

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKVLS
Sbjct: 118 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLS 177

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPV+FLENELLYGESFP+SAEVLDSSFCLPIGKAKIEREG+D
Sbjct: 178 PYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRD 237

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAA+ILAK+GISAE+INLRSIRPLD  TINASVRKTNRLVTVEEGF
Sbjct: 238 VTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGF 297

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEIC +V+EESFGYLDAPVERIAGADVPMPYAANLERMAVPQ+EDIVRAAKRAC
Sbjct: 298 PQHGVGAEICMAVVEESFGYLDAPVERIAGADVPMPYAANLERMAVPQIEDIVRAAKRAC 357

Query: 361 YRSVPMAAAA 370
           YRS  MAA A
Sbjct: 358 YRSTAMAATA 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075515|ref|XP_002304661.1| predicted protein [Populus trichocarpa] gi|222842093|gb|EEE79640.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/351 (93%), Positives = 342/351 (97%)

Query: 20  IRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE 79
           IRP VS  R YSSA K++ VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL+
Sbjct: 1   IRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLD 60

Query: 80  KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSS 139
           KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTFNFSMQAIDHIINSAAKSNYMSS
Sbjct: 61  KYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTFNFSMQAIDHIINSAAKSNYMSS 120

Query: 140 GQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199
           GQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLKVL+PYSSEDARGLLKAAIRDPD
Sbjct: 121 GQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLKVLAPYSSEDARGLLKAAIRDPD 180

Query: 200 PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
           PVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIEREGKDVTITAFSK+VG +LKAAEI
Sbjct: 181 PVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIEREGKDVTITAFSKMVGYALKAAEI 240

Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFG 319
           LAKEGI+AEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEICASV+EESFG
Sbjct: 241 LAKEGINAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGFPQHGVGAEICASVVEESFG 300

Query: 320 YLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 370
           YLDAPVERIAGADVPMPYAANLER+AVPQVEDIVRAAKRACYRSVPMAAAA
Sbjct: 301 YLDAPVERIAGADVPMPYAANLERLAVPQVEDIVRAAKRACYRSVPMAAAA 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445580|ref|XP_004140550.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/370 (88%), Positives = 347/370 (93%), Gaps = 2/370 (0%)

Query: 1   MWGIIRQKVAAGGGS--PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVF 58
           MWGI+RQKV AG  S   +  +RP  S  R YSSA K+M VR+ALNSALDEEMS DPKVF
Sbjct: 1   MWGIVRQKVGAGASSIPALQSLRPAASASRYYSSAAKEMTVRDALNSALDEEMSVDPKVF 60

Query: 59  LMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118
           LMGEEVGEYQGAYKI+KGLLEKYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFN
Sbjct: 61  LMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFN 120

Query: 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKV 178
           FSMQAIDHIINSAAK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKV
Sbjct: 121 FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKV 180

Query: 179 LSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG 238
           L+PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF  PIGKAKIEREG
Sbjct: 181 LAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREG 240

Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298
           KDVTITAFSK+VG +LKAAE+L+KEGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEE
Sbjct: 241 KDVTITAFSKMVGYALKAAEVLSKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEE 300

Query: 299 GFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 358
           GFPQHGVGAEIC SV+EESFGYLDAPVERIAGAD+PMPYAANLERMAVPQVEDIVRAAKR
Sbjct: 301 GFPQHGVGAEICTSVVEESFGYLDAPVERIAGADIPMPYAANLERMAVPQVEDIVRAAKR 360

Query: 359 ACYRSVPMAA 368
           ACYR+VP+AA
Sbjct: 361 ACYRAVPLAA 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519858|ref|XP_004166951.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/370 (88%), Positives = 347/370 (93%), Gaps = 2/370 (0%)

Query: 1   MWGIIRQKVAAGGGS--PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVF 58
           MWGI+RQKV AG  S   +  +RP  S  R YSSA K+M VR+ALNSALDEEMSADPK F
Sbjct: 1   MWGIVRQKVGAGASSIPALQSLRPAASASRYYSSAAKEMTVRDALNSALDEEMSADPKXF 60

Query: 59  LMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118
           LMGEEVGEYQGAYKI+KGLLEKYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFN
Sbjct: 61  LMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFN 120

Query: 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKV 178
           FSMQAIDHIINSAAK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKV
Sbjct: 121 FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKV 180

Query: 179 LSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG 238
           L+PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF  PIGKAKIEREG
Sbjct: 181 LAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREG 240

Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298
           KDVTITAFSK+VG +LKAAE+L+KEGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEE
Sbjct: 241 KDVTITAFSKMVGYALKAAEVLSKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEE 300

Query: 299 GFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 358
           GFPQHGVGAEIC SV+EESFGYLDAPVERIAGAD+PMPYAANLERMAVPQVEDIVRAAKR
Sbjct: 301 GFPQHGVGAEICTSVVEESFGYLDAPVERIAGADIPMPYAANLERMAVPQVEDIVRAAKR 360

Query: 359 ACYRSVPMAA 368
           ACYR+VP+AA
Sbjct: 361 ACYRAVPLAA 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543140|ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223548594|gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/371 (89%), Positives = 347/371 (93%), Gaps = 4/371 (1%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFL 59
           M GII+QK     G  + RIRP V S  R YSSA K+M VREALNSALDEEMSADPKVFL
Sbjct: 1   MLGIIKQKAL---GKSLQRIRPAVASAWRAYSSAAKEMTVREALNSALDEEMSADPKVFL 57

Query: 60  MGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119
           MGEEVGEYQGAYKI+KGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFNF
Sbjct: 58  MGEEVGEYQGAYKITKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFNF 117

Query: 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVL 179
           SMQAIDHIINSAAKS YMS+GQ+SVPIVFRGPNGAAAGVGAQHS CYA+WYAS PGLKVL
Sbjct: 118 SMQAIDHIINSAAKSTYMSAGQLSVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVL 177

Query: 180 SPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGK 239
           +PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFC PIGKAKIEREGK
Sbjct: 178 APYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCTPIGKAKIEREGK 237

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           DVTITAFSK+VG +LKAAE+LAKEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEG
Sbjct: 238 DVTITAFSKMVGYALKAAELLAKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEG 297

Query: 300 FPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 359
           FPQHGVGAEICASVIE+SFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA
Sbjct: 298 FPQHGVGAEICASVIEDSFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 357

Query: 360 CYRSVPMAAAA 370
           CYRSVP AA A
Sbjct: 358 CYRSVPTAATA 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501349|ref|XP_003620963.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|217073128|gb|ACJ84923.1| unknown [Medicago truncatula] gi|355495978|gb|AES77181.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|388521205|gb|AFK48664.1| unknown [Medicago truncatula]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/370 (88%), Positives = 344/370 (92%), Gaps = 9/370 (2%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           +RP  S  R+ SS+ KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 1   MLGVIRNK---------NLLRPSFSAFRHLSSSAKQMTVRDALNSALDEEMSADPKVFLM 51

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 52  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 111

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHSHCYA+WY S PGLKVL+
Sbjct: 112 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLA 171

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD
Sbjct: 172 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 231

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAE L KEGISAEVINLRSIRPLDR+TINASVRKTNRLVTVEEGF
Sbjct: 232 VTITAFSKMVGFALKAAETLEKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGF 291

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLER+AVPQ+EDIVRAAKRAC
Sbjct: 292 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQIEDIVRAAKRAC 351

Query: 361 YRSVPMAAAA 370
           +RSVPMAA A
Sbjct: 352 HRSVPMAATA 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807782|ref|NP_001242433.1| uncharacterized protein LOC100805001 [Glycine max] gi|255635914|gb|ACU18304.1| unknown [Glycine max]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/370 (88%), Positives = 344/370 (92%), Gaps = 10/370 (2%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           IRP  S +R+ SSA K++ VREALNSALDEEMSADPKVFLM
Sbjct: 1   MLGVIRHK----------SIRPAFSAIRHLSSAAKEITVREALNSALDEEMSADPKVFLM 50

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAYYGL+PVVEFMTFNFS
Sbjct: 51  GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFS 110

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYA+WY S PGLKVLS
Sbjct: 111 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYGSCPGLKVLS 170

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD
Sbjct: 171 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 230

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITA+SK+VG +LKAAE LAKEGISAEVINLRSIRPLDRSTIN SVRKTNRLVTVEEGF
Sbjct: 231 VTITAYSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGF 290

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
           PQHGVGAEIC SVIEESFGYLDAPVERIAGADVPMP+AANLERMAVPQVEDIVRAAKRAC
Sbjct: 291 PQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPHAANLERMAVPQVEDIVRAAKRAC 350

Query: 361 YRSVPMAAAA 370
           YRSVP+AA+A
Sbjct: 351 YRSVPLAASA 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2152745	363	MAB1 "MACCI-BOU" [Arabidopsis	0.978	0.997	0.848	3.5e-162
FB|FBgn0039635	365	CG11876 [Drosophila melanogast	0.913	0.926	0.684	1.8e-119
DICTYBASE|DDB_G0276417	356	pdhB "pyruvate dehydrogenase E	0.943	0.980	0.630	1e-116
UNIPROTKB|F1N823	360	PDHB "Uncharacterized protein"	0.948	0.975	0.632	9.4e-114
UNIPROTKB|Q2GHV6	332	ECH_0149 "Putative pyruvate de	0.891	0.993	0.633	1.8e-112
TIGR_CMR|ECH_0149	332	ECH_0149 "putative pyruvate de	0.891	0.993	0.633	1.8e-112
CGD|CAL0003677	379	PDB1 [Candida albicans (taxid:	0.886	0.865	0.654	2.9e-112
POMBASE|SPBC30D10.13c	366	pdb1 "pyruvate dehydrogenase e	0.894	0.904	0.636	7.6e-112
ZFIN|ZDB-GENE-040426-2173	359	pdhb "pyruvate dehydrogenase (	0.881	0.908	0.645	7.6e-112
SGD|S000000425	366	PDB1 "E1 beta subunit of the p	0.924	0.934	0.634	1.6e-111

TAIR|locus:2152745 MAB1 "MACCI-BOU" [Arabidopsis thaliana (taxid:3702)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 308/363 (84%), Positives = 337/363 (92%)

Query:     1 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
             M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct:     1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query:    61 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
             GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct:    60 GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query:   121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
             MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct:   120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query:   181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
             PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct:   180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query:   241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
             VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct:   240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query:   301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
             PQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRAC
Sbjct:   300 PQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRAC 359

Query:   361 YRS 363
             YRS
Sbjct:   360 YRS 362

GO:0003824 "catalytic activity" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

FB|FBgn0039635 CG11876 [Drosophila melanogaster (taxid:7227)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 232/339 (68%), Positives = 275/339 (81%)

Query:    33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
             A KQM VR+ALNSALD+E++ D +VF++GEEV +Y GAYK+S+GL +KYG +RV+DTPIT
Sbjct:    25 AAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPIT 84

Query:    93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
             E GF GI VGAA  GL+PV EFMT+NFSMQAIDHIINSAAK+ YMS+G ++VPIVFRGPN
Sbjct:    85 EMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPN 144

Query:   153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
             GAA+GV AQHS C+AAWYA  PGLKVLSPY +EDARGLLK+AIRDPDPVVFLENEL+YG 
Sbjct:   145 GAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENELVYGT 204

Query:   213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
             +FPV+  V D  F +PIGKAK+ R GKD+T+ A SK V  SL AA  LAK+GI AEVINL
Sbjct:   205 AFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGIEAEVINL 264

Query:   273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE-SFGYLDAPVERIAGA 331
             RSIRPLD +TI ASVRKT+ LVTVE G+PQHGVGAEICA ++E+ +F  LDAPV R AG 
Sbjct:   265 RSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVWRCAGV 324

Query:   332 DVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 370
             DVPMPYA  LE  A+P+V+D+V A  +     V  AAAA
Sbjct:   325 DVPMPYAKTLEAHALPRVQDLVEATLKVLGGKVGKAAAA 363

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

DICTYBASE|DDB_G0276417 pdhB "pyruvate dehydrogenase E1 beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 222/352 (63%), Positives = 284/352 (80%)

Query:    15 SPVARIRP-VVSNLR--NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
             S + +I+P ++ N R    + A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAY
Sbjct:     4 SILKKIQPSLLVNFRIITRTYATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAY 63

Query:    72 KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
             KI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+
Sbjct:    64 KITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSS 123

Query:   132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
             AK++YMS G++  PIV+RGPNG    VGAQHS C+AAWY SVPGLKV++P+S+ D RGLL
Sbjct:   124 AKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLL 183

Query:   192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
             K+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV 
Sbjct:   184 KSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVS 243

Query:   252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICA 311
               ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A
Sbjct:   244 NCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISA 303

Query:   312 SVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 363
              ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR   R+
Sbjct:   304 LMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355

GO:0008152 "metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA;ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1N823 PDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 225/356 (63%), Positives = 271/356 (76%)

Query:     8 KVAAGGGS----PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEE 63
             K+AA G      P  R+ P    LR  + A  Q+ VR+ALN ALDEE+  D +VFL+GEE
Sbjct:     1 KMAAAGALRLLVPRGRLLPPRRGLRLSAPAAIQVTVRDALNQALDEELERDERVFLLGEE 60

Query:    64 VGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQA 123
             V +Y GAYKIS+GL +KYG +R++DTPI+E GFTGI VGAA  GL+PV EFMTFNFSMQA
Sbjct:    61 VAQYDGAYKISRGLWKKYGDKRIIDTPISEMGFTGIAVGAAMAGLRPVCEFMTFNFSMQA 120

Query:   124 IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYS 183
             ID +INSAAK+ YMS+G I VPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP+S
Sbjct:   121 IDQVINSAAKTCYMSAGTIPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWS 180

Query:   184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTI 243
             SEDA+GLLKA+IRD +PVV LENELLYG  F +S +     F +PIGKAKIEREG  VT+
Sbjct:   181 SEDAKGLLKASIRDDNPVVMLENELLYGVPFEMSEQAQSKDFVVPIGKAKIEREGTHVTL 240

Query:   244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH 303
              A S+ VG  L+AA ILAKEG+  EVINLR+IRP+D  T+ ASV KTN LVTVE G+PQ 
Sbjct:   241 VAHSRPVGHCLEAASILAKEGVECEVINLRTIRPMDIETVEASVAKTNHLVTVEGGWPQF 300

Query:   304 GVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 358
             GVG+EICA ++E  +F YLDAP  R+ GADVPMPYA  LE   +PQV+DI+ A K+
Sbjct:   301 GVGSEICARIMEGPAFNYLDAPAVRVTGADVPMPYAKILEDNCIPQVKDIIFAVKK 356

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q2GHV6 ECH_0149 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 209/330 (63%), Positives = 268/330 (81%)

Query:    34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE 93
             ++ + VREAL  A+ EEM  D  V +MGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE
Sbjct:     1 MRTLTVREALCEAIREEMERDHTVLIMGEEVGEYQGAYKVTQGLLEQFGPDRVIDTPITE 60

Query:    94 AGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG 153
              GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK++YMS GQ++ PIVFRGPNG
Sbjct:    61 HGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTSYMSGGQLNCPIVFRGPNG 120

Query:   154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 213
             AAA VGAQHS CYA+WYA +PGLKV+SPY + D +GLLKAAIRD +PVVFLENE+ YG  
Sbjct:   121 AAARVGAQHSQCYASWYAHIPGLKVVSPYFAADCKGLLKAAIRDLNPVVFLENEIAYGHK 180

Query:   214 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273
               +  EV  S +   IGKA I +EG D+TITAFS  V  +L+AAE+LAKEGI+AEVI+LR
Sbjct:   181 HEIPNEVSTSDYITEIGKAAIVKEGTDITITAFSLQVKFALEAAELLAKEGINAEVIDLR 240

Query:   274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 333
             ++RPLD  TI  S++KTN+++++EEG+P  G+G+EI A ++E +F  LDAP+ RI G DV
Sbjct:   241 TLRPLDTETILRSIKKTNKIISIEEGWPYSGIGSEIAALIMEYAFDDLDAPMIRITGKDV 300

Query:   334 PMPYAANLERMAVPQVEDIVRAAKRACYRS 363
             P+PYA NLE++A+PQ+EDI+ AA+  C R+
Sbjct:   301 PLPYATNLEKLALPQIEDILEAARALCIRN 330

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|ECH_0149 ECH_0149 "putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 209/330 (63%), Positives = 268/330 (81%)

Query:    34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE 93
             ++ + VREAL  A+ EEM  D  V +MGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE
Sbjct:     1 MRTLTVREALCEAIREEMERDHTVLIMGEEVGEYQGAYKVTQGLLEQFGPDRVIDTPITE 60

Query:    94 AGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG 153
              GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK++YMS GQ++ PIVFRGPNG
Sbjct:    61 HGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTSYMSGGQLNCPIVFRGPNG 120

Query:   154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 213
             AAA VGAQHS CYA+WYA +PGLKV+SPY + D +GLLKAAIRD +PVVFLENE+ YG  
Sbjct:   121 AAARVGAQHSQCYASWYAHIPGLKVVSPYFAADCKGLLKAAIRDLNPVVFLENEIAYGHK 180

Query:   214 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273
               +  EV  S +   IGKA I +EG D+TITAFS  V  +L+AAE+LAKEGI+AEVI+LR
Sbjct:   181 HEIPNEVSTSDYITEIGKAAIVKEGTDITITAFSLQVKFALEAAELLAKEGINAEVIDLR 240

Query:   274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 333
             ++RPLD  TI  S++KTN+++++EEG+P  G+G+EI A ++E +F  LDAP+ RI G DV
Sbjct:   241 TLRPLDTETILRSIKKTNKIISIEEGWPYSGIGSEIAALIMEYAFDDLDAPMIRITGKDV 300

Query:   334 PMPYAANLERMAVPQVEDIVRAAKRACYRS 363
             P+PYA NLE++A+PQ+EDI+ AA+  C R+
Sbjct:   301 PLPYATNLEKLALPQIEDILEAARALCIRN 330

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

CGD|CAL0003677 PDB1 [Candida albicans (taxid:5476)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 216/330 (65%), Positives = 261/330 (79%)

Query:    31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
             S+ VK++ VR+ALN AL EE+  D  VFLMGEEV +Y GAYK+S+GLL+K+G +RV+DTP
Sbjct:    46 STPVKEITVRDALNQALSEELDRDEDVFLMGEEVAQYNGAYKVSRGLLDKFGEKRVIDTP 105

Query:    91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
             ITE GFTG+ VGAA +GLKPV+EFMT+NF+MQ IDHI+NSAAK+ YMS G+    I FRG
Sbjct:   106 ITEMGFTGLAVGAALHGLKPVLEFMTWNFAMQGIDHILNSAAKTLYMSGGKQPCNITFRG 165

Query:   151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
             PNGAAAGV AQHS CYAAWY S+PGLKVLSPYS+ED +GLLKAAIRDP+PVVFLENE+ Y
Sbjct:   166 PNGAAAGVAAQHSQCYAAWYGSIPGLKVLSPYSAEDYKGLLKAAIRDPNPVVFLENEIAY 225

Query:   211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269
             GE+F VS E     F LPIGKAKIE+EG D+TI   S+ +  +++AAEIL K+ GI AEV
Sbjct:   226 GETFKVSEEFSSPDFILPIGKAKIEKEGTDLTIVGHSRALKFAVEAAEILEKDFGIKAEV 285

Query:   270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERI 328
             +NLRSI+PLD   I  SV+KTN LVTVE GFP  GVG+EICA ++E E+F YLDAPVER+
Sbjct:   286 LNLRSIKPLDVPAIVDSVKKTNHLVTVENGFPGFGVGSEICAQIMESEAFDYLDAPVERV 345

Query:   329 AGADVPMPYAANLERMAVPQVEDIVRAAKR 358
              G +VP PYA  LE  A P  E I+RA K+
Sbjct:   346 TGCEVPTPYAKELEDFAFPDTEVILRACKK 375

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

POMBASE|SPBC30D10.13c pdb1 "pyruvate dehydrogenase e1 component beta subunit Pdb1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 212/333 (63%), Positives = 268/333 (80%)

Query:    31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
             S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTP
Sbjct:    32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTP 91

Query:    91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
             ITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFRG
Sbjct:    92 ITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRG 151

Query:   151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
             PNG AA V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LY
Sbjct:   152 PNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211

Query:   211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEV 269
             G++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEV
Sbjct:   212 GKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEV 271

Query:   270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERI 328
             INLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER+
Sbjct:   272 INLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERV 331

Query:   329 AGADVPMPYAANLERMAVPQVEDIVRAAKRACY 361
             + ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct:   332 SMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=EXP;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=EXP;ISS;IMP

GO:0006096 "glycolysis" evidence=IEA

GO:0006526 "arginine biosynthetic process" evidence=IMP

GO:0006542 "glutamine biosynthetic process" evidence=IMP

ZFIN|ZDB-GENE-040426-2173 pdhb "pyruvate dehydrogenase (lipoamide) beta" [Danio rerio (taxid:7955)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 211/327 (64%), Positives = 259/327 (79%)

Query:    33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
             A  Q+ VR+ALN A+DEE+  D +VFL+GEEV +Y GAYK+S+GL +KYG +R++DTPIT
Sbjct:    29 AAVQVTVRDALNQAMDEELERDERVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIT 88

Query:    93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
             E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G  +VPIVFRGPN
Sbjct:    89 EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQAVPIVFRGPN 148

Query:   153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
             GA+AGV AQHS C+AAWY   PGLKVLSP++SEDARGLLKAAIRD +PVVFLENEL+YG 
Sbjct:   149 GASAGVAAQHSQCFAAWYGHCPGLKVLSPWNSEDARGLLKAAIRDDNPVVFLENELMYGV 208

Query:   213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
              F +S EV    F +PIGKAKIER+G  +T+ + S++VGL L AA +LAKEGI  EVINL
Sbjct:   209 PFEMSEEVQSKDFVIPIGKAKIERQGNHITLVSHSRMVGLCLDAAAVLAKEGIECEVINL 268

Query:   273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGA 331
             RSIRPLD  TI  S+ KTN LVTVE G+PQ GVGAEI A ++E  +F YLDAP  R+ G 
Sbjct:   269 RSIRPLDADTIETSITKTNHLVTVEGGWPQFGVGAEILARIMEGPAFNYLDAPAVRVTGV 328

Query:   332 DVPMPYAANLERMAVPQVEDIVRAAKR 358
             D+PMPYA  LE  ++PQ++DI+ + K+
Sbjct:   329 DIPMPYAKILEDNSIPQIKDIIFSVKK 355

GO:0003824 "catalytic activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

SGD|S000000425 PDB1 "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 219/345 (63%), Positives = 264/345 (76%)

Query:    15 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS 74
             +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+S
Sbjct:    17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVS 76

Query:    75 KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS 134
             KGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK+
Sbjct:    77 KGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKT 136

Query:   135 NYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194
             +YMS G     +VFRGPNGAA GVGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAA
Sbjct:   137 HYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAA 196

Query:   195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
             IRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL
Sbjct:   197 IRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSL 255

Query:   255 KAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313
             +AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V
Sbjct:   256 EAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQV 315

Query:   314 IE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 357
             +E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct:   316 MESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;IMP

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P37941	ODBB_BACSU	1, ., 2, ., 4, ., 4	0.4236	0.8432	0.9541	yes	no
P11966	ODPB_BOVIN	1, ., 2, ., 4, ., 1	0.6402	0.8837	0.9108	yes	no
Q5SLR3	ODBB_THET8	1, ., 2, ., 4, ., 4	0.4307	0.8594	0.9814	yes	no
P26269	ODPB_ASCSU	1, ., 2, ., 4, ., 1	0.5892	0.9054	0.9279	N/A	no
Q72GU2	ODBB_THET2	1, ., 2, ., 4, ., 4	0.4276	0.8594	0.9814	yes	no
P32473	ODPB_YEAST	1, ., 2, ., 4, ., 1	0.6347	0.9243	0.9344	yes	no
Q0J0H4	ODPB2_ORYSJ	1, ., 2, ., 4, ., 1	0.8351	1.0	0.9840	no	no
Q6GAC0	ODPB_STAAS	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no
Q5HGZ0	ODPB_STAAC	1, ., 2, ., 4, ., 1	0.3876	0.8675	0.9876	yes	no
P11177	ODPB_HUMAN	1, ., 2, ., 4, ., 1	0.6177	0.8810	0.9080	yes	no
Q9R9N4	ODPB_RHIME	1, ., 2, ., 4, ., 1	0.6288	0.8729	0.7021	yes	no
P52904	ODPB_PEA	1, ., 2, ., 4, ., 1	0.8567	0.9702	1.0	N/A	no
O44451	ODPB_CAEEL	1, ., 2, ., 4, ., 1	0.6333	0.8891	0.9346	yes	no
O66113	ODPB_ZYMMO	1, ., 2, ., 4, ., 1	0.6207	0.8756	0.7012	yes	no
Q86HX0	ODPB_DICDI	1, ., 2, ., 4, ., 1	0.6306	0.9432	0.9803	yes	no
Q6GHZ1	ODPB_STAAR	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no
Q09171	ODPB_SCHPO	1, ., 2, ., 4, ., 1	0.6366	0.8945	0.9043	yes	no
Q38799	ODPB1_ARATH	1, ., 2, ., 4, ., 1	0.8484	0.9783	0.9972	yes	no
Q5RE79	ODPB_PONAB	1, ., 2, ., 4, ., 1	0.6177	0.8810	0.9080	yes	no
Q9D051	ODPB_MOUSE	1, ., 2, ., 4, ., 1	0.6330	0.8810	0.9080	yes	no
Q1RJX3	ODPB_RICBR	1, ., 2, ., 4, ., 1	0.6042	0.8702	0.9907	yes	no
Q68XA8	ODPB_RICTY	1, ., 2, ., 4, ., 1	0.5805	0.8783	0.9969	yes	no
P99063	ODPB_STAAN	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no
Q4UKQ7	ODPB_RICFE	1, ., 2, ., 4, ., 1	0.6048	0.8783	0.9969	yes	no
P49432	ODPB_RAT	1, ., 2, ., 4, ., 1	0.6269	0.8810	0.9080	yes	no
Q92IS2	ODPB_RICCN	1, ., 2, ., 4, ., 1	0.5927	0.8783	0.9969	yes	no
P0A0A2	ODPB_STAAW	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no
Q9ZDR3	ODPB_RICPR	1, ., 2, ., 4, ., 1	0.5835	0.8783	0.9969	yes	no
P0A0A3	ODPB_STAAU	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no
Q6Z1G7	ODPB1_ORYSJ	1, ., 2, ., 4, ., 1	0.9196	0.9081	0.8983	yes	no
P0A0A1	ODPB_STAAM	1, ., 2, ., 4, ., 1	0.3846	0.8675	0.9876	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	0.998
4th Layer	1.2.4.1	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_I0194	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_II001653	SubName- Full=Putative uncharacterized protein; (355 aa)	•	•	•		•	•	•		0.992
	gw1.X.5451.1	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)	•	•	•	•	•	•	•		0.988
	grail3.0009040502	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)	•	•	•	•	•	•	•		0.988
	gw1.97.147.1	dihydrolipoamide acetyltransferase (448 aa)	•		•		•	•	•		0.975
	estExt_Genewise1_v1.C_410201	hypothetical protein (414 aa)	•		•			•	•		0.971
	fgenesh4_pg.C_LG_III000191	SubName- Full=Putative uncharacterized protein; (512 aa)	•		•		•	•	•		0.970
	LPD1	precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)	•			•	•	•	•		0.969
	gw1.XIX.2128.1	hypothetical protein (435 aa)	•		•			•	•		0.969
	estExt_fgenesh4_pg.C_LG_VIII0227	hypothetical protein (588 aa)	•		•		•	•	•		0.962
	LPD3	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)	•					•	•		0.936

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
PLN02683	356	PLN02683, PLN02683, pyruvate dehydrogenase E1 comp	0.0
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.0
PRK09212	327	PRK09212, PRK09212, pyruvate dehydrogenase subunit	0.0
PTZ00182	355	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro	0.0
COG0022	324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	0.0
CHL00144	327	CHL00144, odpB, pyruvate dehydrogenase E1 componen	1e-105
cd07036	167	cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY	1e-105
pfam02779	172	pfam02779, Transket_pyr, Transketolase, pyrimidine	2e-49
pfam02780	124	pfam02780, Transketolase_C, Transketolase, C-termi	1e-46
COG3958	312	COG3958, COG3958, Transketolase, C-terminal subuni	5e-29
smart00861	136	smart00861, Transket_pyr, Transketolase, pyrimidin	2e-27
COG1154	627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	5e-22
PRK05444	580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	8e-21
cd07033	156	cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin	5e-19
cd06586	154	cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding	9e-18
TIGR00204	617	TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn	1e-17
PRK12571	641	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate	6e-15
PLN02234	641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	5e-12
PRK12315	581	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate	2e-10
PLN02582	677	PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate	1e-09
PLN02225	701	PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate	6e-07
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	2e-04

>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta

 Score =  688 bits (1778), Expect = 0.0
 Identities = 315/355 (88%), Positives = 335/355 (94%), Gaps = 1/355 (0%)

Query: 13  GGSPVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
            G  + R RP  +   R Y+SA K+M VR+ALNSALDEEMSADPKVF+MGEEVGEYQGAY
Sbjct: 2   LGQLLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAY 61

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGLL+KYGP+RVLDTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSA
Sbjct: 62  KITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSA 121

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS C+AAWY+SVPGLKVL+PYSSEDARGLL
Sbjct: 122 AKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLL 181

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTI AFSK+VG
Sbjct: 182 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVG 241

Query: 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICA 311
            +LKAAEILAKEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEG+PQHGVGAEICA
Sbjct: 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICA 301

Query: 312 SVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPM 366
           SV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQVEDIVRAAKRACYRSVPM
Sbjct: 302 SVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQVEDIVRAAKRACYRSVPM 356

Length = 356

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  596 bits (1538), Expect = 0.0
 Identities = 226/328 (68%), Positives = 268/328 (81%), Gaps = 3/328 (0%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
             M VREAL  A+ EEM  D  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE 
Sbjct: 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEH 199

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGPNGA
Sbjct: 200 GFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGA 259

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AA V AQHS  YAAWY+ +PGLKV++PYS+ DA+GLLKAAIRDP+PV+FLENE+LYG+SF
Sbjct: 260 AARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSF 319

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
            V    LD  F LPIGKA+I REGKDVTI +FS  +  +LKAAE LAKEGI AEVI+LR+
Sbjct: 320 DVP--KLD-DFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT 376

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334
           IRP+D  TI  SV+KTNRLVTVEEG+PQ GVGAEI A V+E++F YLDAPV R+ G DVP
Sbjct: 377 IRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVP 436

Query: 335 MPYAANLERMAVPQVEDIVRAAKRACYR 362
           MPYAANLE++A+P V ++V A K  CYR
Sbjct: 437 MPYAANLEKLALPSVAEVVEAVKAVCYR 464

Length = 464

>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated

 Score =  539 bits (1390), Expect = 0.0
 Identities = 222/330 (67%), Positives = 269/330 (81%), Gaps = 4/330 (1%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VREAL  A+ EEM  DPKVFLMGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE 
Sbjct: 2   AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEH 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF G+ VGAA+ GL+P+VEFMTFNFSMQAID I+NSAAK+NYMS GQ+  PIVFRGPNGA
Sbjct: 62  GFAGLAVGAAFAGLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AA V AQHS CYAAWY+ +PGLKV++PY + D +GLLK AIRDP+PV+FLENE+LYG S 
Sbjct: 122 AARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSH 181

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
               EV +    +PIGKA I REG DVTI  FS  V L+L+AAE+L KEGIS EVI+LR+
Sbjct: 182 ----EVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334
           +RPLD  TI  SV+KTNRLV VEEG+P  GVGAEI A +++E+F YLDAPVER+ G DVP
Sbjct: 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVP 297

Query: 335 MPYAANLERMAVPQVEDIVRAAKRACYRSV 364
           +PYAANLE++A+P  EDI+ A K+ CYRS+
Sbjct: 298 LPYAANLEKLALPSEEDIIEAVKKVCYRSI 327

Length = 327

>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional

 Score =  531 bits (1369), Expect = 0.0
 Identities = 194/344 (56%), Positives = 238/344 (69%), Gaps = 7/344 (2%)

Query: 21  RPVVSNLRNYS----SAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG 76
               S  R+ S     A  +M VREA+NSALDEE++ DPKVF++GE+V +Y G YK +KG
Sbjct: 15  NSFSSASRSSSTESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKG 74

Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNY 136
           LL+KYGP+RV DTPITE GF G  +GAA  GL+P+ EFM  +F   A D I+N AAK  Y
Sbjct: 75  LLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRY 134

Query: 137 MSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR 196
           MS GQ   PIV RGPNGA    GA HS  + A++A VPGLKV++P   EDA+GLLKAAIR
Sbjct: 135 MSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIR 194

Query: 197 DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256
           DP+PVVF E +LLY ES  V  E     + LP+GKAK+ REGKDVTI  +   V ++LKA
Sbjct: 195 DPNPVVFFEPKLLYRESVEVVPEA---DYTLPLGKAKVVREGKDVTIVGYGSQVHVALKA 251

Query: 257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316
           AE LAKEGIS EVI+LRS+RP DR TI  SV+KT R V V E  P  G+GAEI A ++E+
Sbjct: 252 AEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMED 311

Query: 317 SFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360
            F YL+AP++R+ GAD P PYA NLE   +P  E +V AAKR  
Sbjct: 312 CFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVVEAAKRVL 355

Length = 355

>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

 Score =  505 bits (1303), Expect = 0.0
 Identities = 175/326 (53%), Positives = 225/326 (69%), Gaps = 3/326 (0%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + EA+N A+DEEM  D +V ++GE+VG Y G ++++KGL EK+G ERV+DTPI E+G
Sbjct: 1   QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESG 60

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             GI VGAA  GL+P+VE    +F   A D I+N AAK  Y S GQ +VPIV R PNG  
Sbjct: 61  IAGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGG 120

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
            G GAQHS    A +A +PGLKV+ P +  DA+GLLKAAIRDPDPV+FLE++ LY     
Sbjct: 121 IGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSF-- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +P+GKAKI REG DVTI  +  +V  +L+AAE L KEGISAEVI+LR++
Sbjct: 179 -KGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
            PLD+ TI ASV+KT RLV V E     G+GAEI A + EE+F YLDAP+ R+AG D P+
Sbjct: 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPV 297

Query: 336 PYAANLERMAVPQVEDIVRAAKRACY 361
           PY+A LE+  +P  E IV A K+   
Sbjct: 298 PYSAALEKAYLPNPERIVAAVKKVLE 323

Length = 324

>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated

 Score =  311 bits (798), Expect = e-105
 Identities = 141/325 (43%), Positives = 214/325 (65%), Gaps = 4/325 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           ++ + EAL  A+DEEM+ DP+VF++GE+VG Y G+YK++KGL EKYG  RVLDTPI E  
Sbjct: 3   EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENS 62

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           FTG+ +GAA  GL+P+VE M   F + A + I N+A   +Y S G  ++PIV RGP G  
Sbjct: 63  FTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG 122

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
             +GA+HS    +++ SVPGL++++  +  +A+GLLK+AIR  +PV+F E+ LLY     
Sbjct: 123 RQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYN---- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
           +  E+ D+ + LP+ KA++ R G D+TI  +S++    L+A ++L ++G   E+I+L S+
Sbjct: 179 LKEEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
           +PLD  TI+ SV+KT++++ VEE     G+GAE+ A + E  F  LDAP+ R++  DVP 
Sbjct: 239 KPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPT 298

Query: 336 PYAANLERMAVPQVEDIVRAAKRAC 360
           PY   LE   V Q   I+ A ++  
Sbjct: 299 PYNGPLEEATVIQPAQIIEAVEQII 323

Length = 327

>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

 Score =  305 bits (783), Expect = e-105
 Identities = 99/167 (59%), Positives = 129/167 (77%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A+N ALDEEM  DP+V ++GE+VG+Y G +K++KGLL+K+GP+RV+DTPI EAG  G+ 
Sbjct: 1   QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLA 60

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           VGAA  GL+P+VE M  +F++ A D I+N AAK  YMS GQ  VPIV RGPNG   G GA
Sbjct: 61  VGAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGA 120

Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENE 207
           QHS    AW+A +PGLKV++P +  DA+GLLKAAIRD DPV+FLE++
Sbjct: 121 QHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFLEHK 167

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites lying between PYR and PP domains of separate subunits, the PYR domains are arranged on the beta subunit, the PP domains on the alpha subunits. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 167

>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain

 Score =  163 bits (416), Expect = 2e-49
 Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
           K++  R+A   AL E    DP+V   G +V    G + ++KGLL   G  RV+DT I E 
Sbjct: 1   KKIATRKASGEALAELAKRDPRVVGGGADVA--GGTFTVTKGLLHPQGDGRVIDTGIAEQ 58

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVP-IVFRGPNG 153
              GI  G A +GL P VE    +F+           A  +Y + G++ VP +V R P G
Sbjct: 59  AMVGIANGMALHGLLPPVEATFGDFAN------RADDAIRHYAALGKLPVPFVVTRDPIG 112

Query: 154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
                    S    A+  ++P LKV+ P  + + +GLL+AAI D  PVV      L   
Sbjct: 113 VGEDGPTHQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIEDDGPVVLRLPRQLLRH 171

This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 172

>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain

 Score =  155 bits (393), Expect = 1e-46
 Identities = 65/122 (53%), Positives = 85/122 (69%)

Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289
           GKA+I REG DVTI A+  +V  +L+AAE LAKEGISAEVI+LR+++PLD  TI  SV+K
Sbjct: 1   GKAEILREGDDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKK 60

Query: 290 TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349
           T RLV VEE   + G G+E+ A++ EE F YLDAPV R+ G D P+P+   LE   +   
Sbjct: 61  TGRLVVVEEAVKRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHGPALELAYLGLT 120

Query: 350 ED 351
            +
Sbjct: 121 AE 122

The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Length = 124

>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

 Score =  113 bits (286), Expect = 5e-29
 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 28/284 (9%)

Query: 39  VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTG 98
           +R+     L E    +  + ++  ++           G   K  P+R  +  I E    G
Sbjct: 9   LRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPDRFFNVGIAEQDMVG 63

Query: 99  IGVGAAYYGLKPVVEFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
              G A  G KP V      F+     +A + I NS A +N      ++V IV       
Sbjct: 64  TAAGLALAGKKPFV----STFAAFLSRRAWEQIRNSIAYNN------LNVKIVATHAGVT 113

Query: 155 AAGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
               G+ H       A    +P + V++P  + + R +L        PV ++    L   
Sbjct: 114 YGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAILDQIADYKGPV-YMR---LGRG 168

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
             PV  +    +F   IGKA + R+G D+TI A   +V  +L+AAEIL KEGISA VIN+
Sbjct: 169 KVPVVVDEGGYTF--EIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINM 226

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316
            +I+P+D   I  + R+T R+VT EE     G+G+ +   + E 
Sbjct: 227 FTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSEN 270

Length = 312

>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain

 Score =  104 bits (263), Expect = 2e-27
 Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 12/128 (9%)

Query: 87  LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPI 146
           +DT I E    G   G A +GL+PVVE   F F  +A D I ++ A  N        VP+
Sbjct: 18  IDTGIAEQAMVGFAAGLALHGLRPVVEIF-FTFFDRAKDQIRSAGASGN--------VPV 68

Query: 147 VFR-GPNGAAAGVGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDP-VVF 203
           VFR    G     G   HS    A   ++PGLKV++P    +A+GLL+AAIRD  P V+ 
Sbjct: 69  VFRHDGGGGVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRDDGPVVIR 128

Query: 204 LENELLYG 211
           LE + LY 
Sbjct: 129 LERKSLYR 136

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 136

>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

 Score = 97.3 bits (243), Expect = 5e-22
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 27/235 (11%)

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYMSSG 140
           P+R  D  I E        G A  G+KPVV  + TF   +Q A D +I+  A  N     
Sbjct: 357 PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTF---LQRAYDQLIHDVAIQN----- 408

Query: 141 QISVPIVF---RGPNGAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR 196
              +P+ F   R   G     G  H   +  ++   +P + +++P   E+ R +L  A+ 
Sbjct: 409 ---LPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALA 463

Query: 197 -DPDPVVF-LENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
            D  PV          G       E L       IGK ++ +EG+ V I AF  ++  +L
Sbjct: 464 QDDGPVAIRYPRGNGVGVILTPELEPL------EIGKGELLKEGEKVAILAFGTMLPEAL 517

Query: 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           K AE L   GIS  V++ R ++PLD + +    +  + +VT+EE     G G+ +
Sbjct: 518 KVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAV 572

Length = 627

>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 93.6 bits (234), Expect = 8e-21
 Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 58/270 (21%)

Query: 79  EKYGPERVLDTPITE------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINS 130
           +++ P+R  D  I E      A       G A  GLKPVV  + TF   +Q A D +I+ 
Sbjct: 317 KRF-PDRYFDVGIAEQHAVTFAA------GLATEGLKPVVAIYSTF---LQRAYDQVIHD 366

Query: 131 AAKSNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPY 182
            A  N        +P+ F   R      AG+    G  H   +  ++   +P + +++P 
Sbjct: 367 VALQN--------LPVTFAIDR------AGLVGADGPTHQGAFDLSYLRCIPNMVIMAPS 412

Query: 183 SSEDARGLLKAAIRDPD-PVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGK 239
              + R +L  A+   D P+        Y  G    V    L+    LPIGK ++ REG+
Sbjct: 413 DENELRQMLYTALAYDDGPIAIR-----YPRGNGVGVELPELEP---LPIGKGEVLREGE 464

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           DV I AF  ++  +LKAAE LA    SA V++ R ++PLD   +     K + +VTVEEG
Sbjct: 465 DVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEG 520

Query: 300 FPQHGVGAEICASVIEESFGYLDAPVERIA 329
               G G+ +   + +     LD PV  + 
Sbjct: 521 AIMGGFGSAVLEFLADHG---LDVPVLNLG 547

Length = 580

>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

 Score = 82.5 bits (205), Expect = 5e-19
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A   AL E    DP++  +  ++G   G  K +K       P+R +D  I E    GI 
Sbjct: 1   KAFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKF-----PDRFIDVGIAEQNMVGIA 55

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
            G A +GLKP V   +F F  +A D I +  A  N        +P+ F G   A   VG 
Sbjct: 56  AGLALHGLKPFVSTFSF-FLQRAYDQIRHDVALQN--------LPVKFVG-THAGISVGE 105

Query: 161 ----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203
                      A   ++P + VL P  + +    L+AA+    PV  
Sbjct: 106 DGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYI 152

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Like many TPP-dependent enzymes DXS and TK are homodimers having a PYR and a PP domain on the same subunit. TK has two active sites per dimer which lie between PYR and PP domains of different subunits. For DXS each active site is located at the interface of a PYR and a PP domain from the same subunit. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites but having the PYR and PP domains arranged on separate subunits, the PYR domains on the beta subunits, the PP domains on the alpha subunits. DXS is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis, it catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. TK also plays a central role in the Calvin cycle in plants. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. This subfamily includes the beta subunits of the E1 component of the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 156

>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

 Score = 78.9 bits (195), Expect = 9e-18
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 46  ALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE--KYGPERVLDTPITEAGFTGIGVGA 103
           A  E ++A     + G    E          LL+  + G +R++DT I E G  G   G 
Sbjct: 2   AFAEVLTAWGVRHVFGYPGDEI-------SSLLDALREGDKRIIDTVIHELGAAGAAAGY 54

Query: 104 AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ 161
           A  G  PVV   +    + AI+ + ++AA+          +P+VF       +A      
Sbjct: 55  ARAGGPPVVIVTSGTGLLNAINGLADAAAE---------HLPVVFLIGARGISAQAKQTF 105

Query: 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFLENE 207
            S      Y S+P   + SP  +E   G+  A         PVV     
Sbjct: 106 QSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154

>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 21/266 (7%)

Query: 76  GLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSN 135
               K+ P+R  D  I E        G A  G KP V   +  F  +A D +++      
Sbjct: 345 KFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYS-TFLQRAYDQVVHDVCIQK 402

Query: 136 YMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193
                   +P++F        G  G  H   +  ++   +P + +++P    + R +L  
Sbjct: 403 --------LPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454

Query: 194 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL 252
               D  P+        Y     V  E+      LPIGK+++ R+G+ + I  F  +V  
Sbjct: 455 GYHYDDGPIAVR-----YPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPE 509

Query: 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICAS 312
           +L+ AE L ++GI A V++ R ++PLD   I        +LVTVEE     G G+ +   
Sbjct: 510 ALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAV-LE 568

Query: 313 VIEESFGYLDAPVERIAGADVPMPYA 338
            + +    L  PV+R+   D  +P+ 
Sbjct: 569 FLMDQ-NKL-VPVKRLGIPDFFIPHG 592

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617

>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 32/306 (10%)

Query: 76  GLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSN 135
             L+K  P RV D  I E        G A  GLKP     +  F  +  D +++  A  N
Sbjct: 353 DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS-TFLQRGYDQLLHDVALQN 411

Query: 136 YMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDA 187
                   +P+ F   R      AG+    GA H+  +  A+  ++P + V++P    + 
Sbjct: 412 --------LPVRFVLDR------AGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAEL 457

Query: 188 RGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAF 246
           R +L+ A   D  P+        +     V  E+      L IGK ++ REG DV I + 
Sbjct: 458 RHMLRTAAAHDDGPIAVR-----FPRGEGVGVEIPAEGTILGIGKGRVPREGPDVAILSV 512

Query: 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG 306
              +   L AA++L  EGIS  V + R ++PLD +  +  VR    ++  E+G    G G
Sbjct: 513 GAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHHIVVIVEEQG-AMGGFG 571

Query: 307 AEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV--EDIVRAAKRACYRSV 364
           A +   + +         +  +   D  + +A+  E  A   +   DI  A   A  R  
Sbjct: 572 AHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGALARLS 631

Query: 365 PMAAAA 370
            +    
Sbjct: 632 GVPERE 637

Length = 641

>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 67.0 bits (163), Expect = 5e-12
 Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 46  ALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105
           AL  E  AD  +  +   +G   G   ++  L E   P R  D  I E        G A 
Sbjct: 366 ALIAEAEADKDIVAIHAAMG---GGTMLN--LFESRFPTRCFDVGIAEQHAVTFAAGLAC 420

Query: 106 YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC 165
            GLKP     + +F  +A D +++              +P+ F        G     +HC
Sbjct: 421 EGLKPFCTIYS-SFMQRAYDQVVHDVDLQK--------LPVRFAIDRAGLMGADGP-THC 470

Query: 166 YA---AWYASVPGLKVLSPYSSEDARGLL-KAAIRDPDPVVFLENELLYGESFPVSAEVL 221
            A    + A +P + V++P    +   ++  AA  D  P  F  +    G    VS    
Sbjct: 471 GAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHR---GNGIGVSLPPG 527

Query: 222 DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS 281
           +    L IG+ +I R+G+ V +  +   V   L+AA +L++ G+   V + R  +PLD +
Sbjct: 528 NKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVA 587

Query: 282 TINASVRKTNRLVTVEEG 299
            I +  +    L+TVEEG
Sbjct: 588 LIRSLAKSHEVLITVEEG 605

Length = 641

>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 55/296 (18%)

Query: 28  RNYSSAVKQMMVRE--------ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE 79
            +YSS     ++++        A+N+A+       P VF + E   +Y            
Sbjct: 278 ESYSSVTLDYLLKKIKEGKPVVAINAAI-------PGVFGLKEFRKKY------------ 318

Query: 80  KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSS 139
              P++ +D  I E        G A  G +PV+ F+   F  +A D + +  A +N    
Sbjct: 319 ---PDQYVDVGIAEQESVAFASGIAANGARPVI-FVNSTFLQRAYDQLSHDLAINNN--- 371

Query: 140 GQISVPIVFRGPNGAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIRDP 198
                P V     G+ +G    H   +     +++P L  L+P + E+   +L+ A+   
Sbjct: 372 -----PAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQH 426

Query: 199 D-PVVFL--ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK 255
           + PV     E+ +  G          D S      K ++ + G+ V I A      L  K
Sbjct: 427 EHPVAIRVPEHGVESGP-----TVDTDYSTL----KYEVTKAGEKVAILALGDFYELGEK 477

Query: 256 AAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLV-TVEEGFPQHGVGAEI 309
            A+ L +E GI A +IN + I  LD   +   +++ + LV T+E+G    G G +I
Sbjct: 478 VAKKLKEELGIDATLINPKFITGLDEELLE-KLKEDHELVVTLEDGILDGGFGEKI 532

Length = 581

>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P R  D  I E        G A  GLKP     +  F  +  D +++             
Sbjct: 397 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS-FLQRGYDQVVHDVDLQK------- 448

Query: 143 SVPIVFRGPNGAAAGVGAQH-SHCYA---AWYASVPGLKVLSPYSSEDARGLL-KAAIRD 197
            +P+ F      A  VGA   +HC A    + A +P + V++P    +   ++  AA  D
Sbjct: 449 -LPVRF--AMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAID 505

Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
             P  F       G    V     +    + +GK +I  EG+ V +  +   V   L AA
Sbjct: 506 DRPSCF---RYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAA 562

Query: 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
            +L + G+SA V + R  +PLDR+ I +  +    L+TVEEG
Sbjct: 563 SLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEG 604

Length = 677

>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 38/284 (13%)

Query: 23  VVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYG 82
           +V + R YS    + +V EA       E   D  V   G E+      ++      E++ 
Sbjct: 376 MVKDRRTYSDCFVEALVMEA-------EKDRDIVVVHAGMEMDASLITFQ------ERF- 421

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P+R  +  + E        G +  GLKP    +   F  +A D +++   +       + 
Sbjct: 422 PDRFFNVGMAEQHAVTFSAGLSSGGLKPFC-IIPSAFLQRAYDQVVHDVDRQ------RK 474

Query: 143 SVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD-PV 201
           +V  V        +    Q      A+ +S+P +  ++P   ++   ++  A    D PV
Sbjct: 475 AVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPV 534

Query: 202 VFLENELLYGESFPVSAEVLDSSFCLP------IGKAKIEREGKDVTITAFSKIVGLSLK 255
            F          FP    +++ ++ +P      IG+ ++  EG+DV +  +  +V   L 
Sbjct: 535 CF---------RFP-RGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLH 584

Query: 256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           A  +L+K G++  V + R  +PLD   +    +    L+TVEEG
Sbjct: 585 AHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEG 628

Length = 701

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR------ 280
                  + R+  DV + A    V L+L+AA+ L  EGI   V+++ S    D       
Sbjct: 461 GVAKGGYVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYK 520

Query: 281 -STINASVRKTNRLVTVEEG 299
            S + A+V      V VE G
Sbjct: 521 ESVLPAAVTAR---VAVEAG 537

Length = 586

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PLN02683	356	pyruvate dehydrogenase E1 component subunit beta	100.0
CHL00144	327	odpB pyruvate dehydrogenase E1 component beta subu	100.0
COG0022	324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK09212	327	pyruvate dehydrogenase subunit beta; Validated	100.0
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	100.0
COG3958	312	Transketolase, C-terminal subunit [Carbohydrate tr	100.0
PTZ00182	355	3-methyl-2-oxobutanate dehydrogenase; Provisional	100.0
KOG0524	359	consensus Pyruvate dehydrogenase E1, beta subunit	100.0
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	100.0
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	100.0
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	100.0
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	100.0
KOG0525	362	consensus Branched chain alpha-keto acid dehydroge	100.0
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	100.0
PRK05899	624	transketolase; Reviewed	100.0
PRK12753	663	transketolase; Reviewed	100.0
KOG0523	632	consensus Transketolase [Carbohydrate transport an	100.0
PLN02790	654	transketolase	100.0
PTZ00089	661	transketolase; Provisional	100.0
PRK12754	663	transketolase; Reviewed	100.0
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	100.0
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	100.0
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	100.0
cd07036	167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	100.0
COG0021	663	TktA Transketolase [Carbohydrate transport and met	100.0
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	100.0
smart00861	168	Transket_pyr Transketolase, pyrimidine binding dom	99.97
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	99.92
PF02780	124	Transketolase_C: Transketolase, C-terminal domain;	99.91
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	99.9
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.9
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	99.9
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	99.87
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	99.86
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	99.82
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	99.81
PRK05261	785	putative phosphoketolase; Provisional	99.81
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	99.61
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.6
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	99.58
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	99.54
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	99.29
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	99.28
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	99.26
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	99.22
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	99.21
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.12
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	98.83
KOG0451	913	consensus Predicted 2-oxoglutarate dehydrogenase,	98.82
KOG0450	1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	98.8
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	98.65
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	98.61
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	97.7
PF03894	179	XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate	97.45
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	97.13
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.84
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	96.51
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	96.39
PRK08199	557	thiamine pyrophosphate protein; Validated	96.26
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	95.82
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	95.72
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	95.3
PRK08322	547	acetolactate synthase; Reviewed	95.16
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	95.09
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	95.05
PRK12474	518	hypothetical protein; Provisional	95.02
PRK07586	514	hypothetical protein; Validated	95.01
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	94.94
PRK07524	535	hypothetical protein; Provisional	94.9
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	94.83
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	94.69
PRK08617	552	acetolactate synthase; Reviewed	94.69
PRK07092	530	benzoylformate decarboxylase; Reviewed	94.47
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	94.17
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	94.16
PRK08155	564	acetolactate synthase catalytic subunit; Validated	94.11
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	93.91
PRK08611	576	pyruvate oxidase; Provisional	93.78
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	93.73
PLN02470	585	acetolactate synthase	93.59
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	93.48
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	93.45
COG4032	172	Predicted thiamine-pyrophosphate-binding protein [	93.42
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	93.39
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	93.38
PRK05858	542	hypothetical protein; Provisional	93.36
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	93.33
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	93.23
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	93.13
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	93.0
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	92.98
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	92.82
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	92.77
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	92.77
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	92.66
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	92.62
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	92.5
PRK09124	574	pyruvate dehydrogenase; Provisional	92.49
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	92.34
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	92.25
PF09363	203	XFP_C: XFP C-terminal domain; InterPro: IPR018969	92.16
PRK06457	549	pyruvate dehydrogenase; Provisional	92.01
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	91.97
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	91.95
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	91.94
PRK07064	544	hypothetical protein; Provisional	91.9
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	91.85
PRK08266	542	hypothetical protein; Provisional	91.56
PRK06112	578	acetolactate synthase catalytic subunit; Validated	91.21
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	91.21
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	91.17
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	91.01
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	91.01
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	90.78
PRK08327	569	acetolactate synthase catalytic subunit; Validated	90.77
PRK06546	578	pyruvate dehydrogenase; Provisional	90.43
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	90.36
PRK11269	591	glyoxylate carboligase; Provisional	90.27
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	90.22
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	90.11
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	90.11
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	90.04
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	89.96
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	89.41
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	89.4
PRK06163	202	hypothetical protein; Provisional	89.12
PRK08273	597	thiamine pyrophosphate protein; Provisional	88.68
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	88.62
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	88.37
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	87.87
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	87.61
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	87.47
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	87.12
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	87.08
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	86.96
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	86.96
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	86.58
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	86.18
PLN02573	578	pyruvate decarboxylase	85.95
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	85.43
PRK08155	564	acetolactate synthase catalytic subunit; Validated	85.14
PRK06457	549	pyruvate dehydrogenase; Provisional	85.08
PRK08617	552	acetolactate synthase; Reviewed	84.86
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	84.72
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	83.84
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	83.6
PRK06154	565	hypothetical protein; Provisional	82.86
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	82.51
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	81.65
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	81.49
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	81.46
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	80.67
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	80.62
PRK06546	578	pyruvate dehydrogenase; Provisional	80.34
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	80.31
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	80.22

>PLN02683 pyruvate dehydrogenase E1 component subunit beta

Probab=100.00  E-value=2.4e-75  Score=569.55  Aligned_cols=351  Identities=89%  Similarity=1.337  Sum_probs=319.8

Q ss_pred             cccccCCCCcCC-cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHH
Q 017513           16 PVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA   94 (370)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~   94 (370)
                      ..+|.||..-.- |.|....+++++|++|+++|.+++++|++++++++|++.++|+++.+++|+++|+|+||||+||+||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq   84 (356)
T PLN02683          5 LLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEA   84 (356)
T ss_pred             hccCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHH
Confidence            346677776444 8898878889999999999999999999999999999988888888889999998999999999999


Q ss_pred             HHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCC
Q 017513           95 GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVP  174 (370)
Q Consensus        95 ~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP  174 (370)
                      ||+++|+|||++|+|||+++++++|++|+||||+|++|+++||++|+.++||++++++|...+.|+||++.++++||++|
T Consensus        85 ~~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iP  164 (356)
T PLN02683         85 GFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVP  164 (356)
T ss_pred             HHHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCC
Confidence            99999999999999999999888999999999999999999999999999999999777766679999888899999999


Q ss_pred             CcEEEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHH
Q 017513          175 GLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL  254 (370)
Q Consensus       175 ~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al  254 (370)
                      ||+|++|+|+.|++.++++++++++|+|||+++.++++..+......++++.+++|+++++++|+|++||++|+++..|+
T Consensus       165 nl~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al  244 (356)
T PLN02683        165 GLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYAL  244 (356)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHH
Confidence            99999999999999999999999999999988777664332222222234677899999999999999999999999999


Q ss_pred             HHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCC
Q 017513          255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP  334 (370)
Q Consensus       255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~  334 (370)
                      +|++.|+++||+++|||++||+|||.++|.++++++++|+|+|||+..||||++|++.+.+++|+.++.|+.++|++|.+
T Consensus       245 ~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~  324 (356)
T PLN02683        245 KAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVP  324 (356)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999998876567899999999999


Q ss_pred             CCCHHHHHHHhCCCHHHHHHHHHHHHhccccc
Q 017513          335 MPYAANLERMAVPQVEDIVRAAKRACYRSVPM  366 (370)
Q Consensus       335 ~~~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~  366 (370)
                      +|+...|++.+.+++++|++++++++.++.+|
T Consensus       325 ~p~~~~le~~~~p~~~~i~~a~~~~~~~~~~~  356 (356)
T PLN02683        325 MPYAANLERLALPQVEDIVRAAKRACYRSVPM  356 (356)
T ss_pred             CCccHHHHHhhCCCHHHHHHHHHHHHHhhcCC
Confidence            98888888888889999999999999988876

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated

Probab=100.00  E-value=1.3e-74  Score=559.24  Aligned_cols=324  Identities=43%  Similarity=0.760  Sum_probs=300.4

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      ++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||||+++|+|||++|+|||+++
T Consensus         3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~   81 (327)
T CHL00144          3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG   81 (327)
T ss_pred             cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence            4689999999999999999999999999987778788889999999 88 999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                      ++++|++|+||||+|++|+++||+||+.++||+++.+++..+++|+||||..+++|+++|||+|++|+|+.|++.+++++
T Consensus        82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a  161 (327)
T CHL00144         82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSA  161 (327)
T ss_pred             ehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999764444568999988889999999999999999999999999999


Q ss_pred             HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017513          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (370)
Q Consensus       195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~  274 (370)
                      ++.++|+|||+++.+|+.+    +.++++++.+++||+.++++|+|++||+||++++.|++|++.|+++||+++|||++|
T Consensus       162 ~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~  237 (327)
T CHL00144        162 IRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS  237 (327)
T ss_pred             HhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence            9999999999999988743    234555677899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017513          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR  354 (370)
Q Consensus       275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~  354 (370)
                      |+|||+++|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.++|++|.|+++...+++.++||+++|++
T Consensus       238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~~  317 (327)
T CHL00144        238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVIQPAQIIE  317 (327)
T ss_pred             CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999887666789999999999988656677778999999999


Q ss_pred             HHHHHHhccc
Q 017513          355 AAKRACYRSV  364 (370)
Q Consensus       355 ~i~~~l~~~~  364 (370)
                      +++++++.+|
T Consensus       318 ~i~~~l~~~~  327 (327)
T CHL00144        318 AVEQIITNKK  327 (327)
T ss_pred             HHHHHHhccC
Confidence            9999996654

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

Probab=100.00  E-value=4.2e-74  Score=530.88  Aligned_cols=323  Identities=54%  Similarity=0.867  Sum_probs=310.6

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ++++++|++++|.+.|++|++|+++++|++.++|+|++|.+|.++||++|++|++|+|.+++|+|.|||+.|+||+++++
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (370)
                      +.+|+..|+|||.|++|+.+|||||...+|+|++.+.|...+.|.+|||+.+++|.++||++|++|+||.|++++|+.|+
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI  160 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI  160 (324)
T ss_pred             ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999877655678999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc
Q 017513          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI  275 (370)
Q Consensus       196 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l  275 (370)
                      ++++||++++++.+|+.   ...++|+++|.+|+||+.+.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||
T Consensus       161 rd~dPViflE~k~lY~~---~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl  237 (324)
T COG0022         161 RDPDPVIFLEHKRLYRS---FKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL  237 (324)
T ss_pred             cCCCCEEEEecHHHhcc---cccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence            99999999999999983   235678889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHH
Q 017513          276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA  355 (370)
Q Consensus       276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~  355 (370)
                      +|+|.++|.++++||+++++|+|...++|+|++|+..+.|++|.+|++|+.|++..|.|.|+...|++.+.+++++|.++
T Consensus       238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~a  317 (324)
T COG0022         238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAA  317 (324)
T ss_pred             CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHh
Q 017513          356 AKRACY  361 (370)
Q Consensus       356 i~~~l~  361 (370)
                      ++++++
T Consensus       318 v~~v~~  323 (324)
T COG0022         318 VKKVLE  323 (324)
T ss_pred             HHHHhh
Confidence            999874

>PRK09212 pyruvate dehydrogenase subunit beta; Validated

Probab=100.00  E-value=7.7e-72  Score=540.54  Aligned_cols=324  Identities=67%  Similarity=1.099  Sum_probs=298.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      +++++|++|+++|.+++++|++++++++|++.++|+|+++++|+++|+|+||||+||+||||+++|+|||++|+|||+++
T Consensus         2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~   81 (327)
T PRK09212          2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF   81 (327)
T ss_pred             CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence            35689999999999999999999999999988888888889999999899999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                      ++++|++||||||+|++|+++||++|+.++|+++++++|..+++|+||+|.++++||++|||+|++|+|+.|++.+++++
T Consensus        82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a  161 (327)
T PRK09212         82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA  161 (327)
T ss_pred             ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence            99899999999999999999999999999999999987888889999988888999999999999999999999999999


Q ss_pred             HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017513          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (370)
Q Consensus       195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~  274 (370)
                      +++++|+||++++.+|+..    ++++++++.+++||++++++|.|++||+||+++..|++|++.|+++|++++|||+++
T Consensus       162 ~~~~~Pv~i~~~~~~~~~~----~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~  237 (327)
T PRK09212        162 IRDPNPVIFLENEILYGHS----HEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT  237 (327)
T ss_pred             HhCCCcEEEEEchhhcCCC----CCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            9999999999987766531    234445577899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCC-CHHHHH
Q 017513          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVP-QVEDIV  353 (370)
Q Consensus       275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl-~~~~I~  353 (370)
                      |+|||++.|.++++++++|+|+|||+..||||+++++.+.++++..++.++.+++.+|.|.+++.. .+++++ ++++|+
T Consensus       238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~-le~~~l~~~~~I~  316 (327)
T PRK09212        238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAAN-LEKLALPSEEDII  316 (327)
T ss_pred             CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHH-HHHhcCCCHHHHH
Confidence            999999999999999999999999999999999999999988654456799999999999887644 455665 999999


Q ss_pred             HHHHHHHhcc
Q 017513          354 RAAKRACYRS  363 (370)
Q Consensus       354 ~~i~~~l~~~  363 (370)
                      ++|++++++.
T Consensus       317 ~~i~~~~~~~  326 (327)
T PRK09212        317 EAVKKVCYRS  326 (327)
T ss_pred             HHHHHHHhhc
Confidence            9999998653

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=100.00  E-value=2.8e-71  Score=555.41  Aligned_cols=323  Identities=69%  Similarity=1.112  Sum_probs=298.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      +.+++|++|+++|.+++++|++++++++|++.++|.++.+.+|.++|+|+||||+||+||+|+|+|+|||++|+|||+++
T Consensus       140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~  219 (464)
T PRK11892        140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF  219 (464)
T ss_pred             cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence            35589999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                      ++++|++|+||||+|++|+++||+||.+++||++++++|...+.|+||+++|+++|+++|||+|++|+|+.|++.+++++
T Consensus       220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~a  299 (464)
T PRK11892        220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAA  299 (464)
T ss_pred             ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHH
Confidence            88899999999999999999999999999999999987665558889999999999999999999999999999999999


Q ss_pred             HhCCCCEEEEecccccCCCCCCcccccC-CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          195 IRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      +++++|+||++++.+|+++.    .++. +++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||++
T Consensus       300 i~~~~Pv~ile~~~ry~~~~----~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~  375 (464)
T PRK11892        300 IRDPNPVIFLENEILYGQSF----DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR  375 (464)
T ss_pred             hhCCCcEEEEechhhcCCCC----CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            99999999999888787531    1221 357789999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV  353 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~  353 (370)
                      ||+|||.++|.++++++++|||+|||+..||||++|++.+.+++|++++.|+.++|++|.|.++...|+++..+++++|+
T Consensus       376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv  455 (464)
T PRK11892        376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVV  455 (464)
T ss_pred             CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999998877888999999999998876666554445999999


Q ss_pred             HHHHHHHh
Q 017513          354 RAAKRACY  361 (370)
Q Consensus       354 ~~i~~~l~  361 (370)
                      +++++++.
T Consensus       456 ~av~~~~~  463 (464)
T PRK11892        456 EAVKAVCY  463 (464)
T ss_pred             HHHHHHhh
Confidence            99998874

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.2e-71  Score=508.39  Aligned_cols=303  Identities=27%  Similarity=0.376  Sum_probs=273.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      ...++|++|+++|.++.++|++||++++|+.+++.    +..|.++| ||||||+||+||+|+|+|+|+|++|++||+++
T Consensus         5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~----~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t   79 (312)
T COG3958           5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTK----TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST   79 (312)
T ss_pred             cchHHHHHHHHHHHHHHhcCCCEEEEecccccccc----hhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence            35679999999999999999999999999986554    56899999 99999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCC-CCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~-~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (370)
                      |++|.+.|+||||||++||        .++||.+++. +|.+.+ +|+|| +.+|+++||.+||++|++|+|+.+++.++
T Consensus        80 fa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~  151 (312)
T COG3958          80 FAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAIL  151 (312)
T ss_pred             hHHHHHHHHHHHHHHHhhh--------ccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHH
Confidence            9876677999999999997        5788888874 677654 99998 45678999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEE
Q 017513          192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (370)
Q Consensus       192 ~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~  271 (370)
                      +++.++++|+|+|..|.    ++|  ..++..+|.|++||++++++|+|++||++|.|+..|++|++.|+++||++.|||
T Consensus       152 ~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~  225 (312)
T COG3958         152 DQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVIN  225 (312)
T ss_pred             HHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999997653    222  122333588999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017513          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV  349 (370)
Q Consensus       272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~  349 (370)
                      +.||||+|++.+.+.++++++|||+|||++.||||+.|++.+++++    +.|++++|++|.|+.+  ..+|.++||+|+
T Consensus       226 m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~  301 (312)
T COG3958         226 MFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDP  301 (312)
T ss_pred             cCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999999999986    5789999999999864  478889999999


Q ss_pred             HHHHHHHHHHH
Q 017513          350 EDIVRAAKRAC  360 (370)
Q Consensus       350 ~~I~~~i~~~l  360 (370)
                      ++|++++++++
T Consensus       302 ~~I~~~v~~~~  312 (312)
T COG3958         302 ESIAARVLELL  312 (312)
T ss_pred             HHHHHHHHhhC
Confidence            99999999864

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional

Probab=100.00  E-value=1e-70  Score=536.84  Aligned_cols=324  Identities=58%  Similarity=0.947  Sum_probs=301.3

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~  113 (370)
                      .++++||++|+++|.+++++||+++++++|++.++|+++.+++|+++|+|+||||+||+||+|+++|+|||++|+|||++
T Consensus        32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~  111 (355)
T PTZ00182         32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE  111 (355)
T ss_pred             ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence            55778999999999999999999999999998777778878999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      +++++|++||+|||+|++|+++||++|++++|+++++++|..+++|+||+|.++++|+++|||+|++|+|+.|++.++++
T Consensus       112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~~  191 (355)
T PTZ00182        112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKA  191 (355)
T ss_pred             echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence            87679999999999999999999999999999999988777788999998888999999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      ++++++|+||++|+.+++...+   .++.+++.+++|+++++++|.|++||+||+++..|++|++.|+++|++++|||++
T Consensus       192 a~~~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~  268 (355)
T PTZ00182        192 AIRDPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR  268 (355)
T ss_pred             HHhCCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            9999999999999988875322   2233456788999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV  353 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~  353 (370)
                      +++|||.+.|.+.++++++|+|+|||+..||||++|++.+.++++..++.|+.++|++|.|+|++..|++.+++++++|+
T Consensus       269 ~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~  348 (355)
T PTZ00182        269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVV  348 (355)
T ss_pred             eCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999988766788999999999999988889999999999999


Q ss_pred             HHHHHHH
Q 017513          354 RAAKRAC  360 (370)
Q Consensus       354 ~~i~~~l  360 (370)
                      +++++++
T Consensus       349 ~~~~~~~  355 (355)
T PTZ00182        349 EAAKRVL  355 (355)
T ss_pred             HHHHHhC
Confidence            9999864

>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]

Probab=100.00  E-value=5e-66  Score=466.26  Aligned_cols=327  Identities=70%  Similarity=1.129  Sum_probs=313.7

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~  113 (370)
                      ++.++.|+|++++|.+.+.+|+++++++++++.++|+|+++++|.++||+.|++|++|+|....|+|.|+|+.|+||+++
T Consensus        32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e  111 (359)
T KOG0524|consen   32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE  111 (359)
T ss_pred             ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      .+.-.|++.++|||.|+.++++|||||++++|+||+++.|...+.|.+|||++.+|+.++||++|++|.+++|++++++.
T Consensus       112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa  191 (359)
T KOG0524|consen  112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA  191 (359)
T ss_pred             hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHH
Confidence            98878999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      |+++++||+++++..||+..+++.++--.++|-.++||+.+.|+|+|+||+++..++..++||++.|.++|++++|||+|
T Consensus       192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr  271 (359)
T KOG0524|consen  192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR  271 (359)
T ss_pred             hccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeee
Confidence            99999999999999899877655444444678899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV  353 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~  353 (370)
                      ||+|||.++|.++++|+.++++||+.+..+|+|++|+..+.|+.|++|++|+.|+...|.|.|+...|++...+++++|+
T Consensus       272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV  351 (359)
T KOG0524|consen  272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIV  351 (359)
T ss_pred             ccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccchhhHhhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 017513          354 RAAKRAC  360 (370)
Q Consensus       354 ~~i~~~l  360 (370)
                      .++++++
T Consensus       352 ~Avk~~~  358 (359)
T KOG0524|consen  352 TAVKKLC  358 (359)
T ss_pred             HHHHHhh
Confidence            9999876

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=6.6e-64  Score=516.79  Aligned_cols=311  Identities=19%  Similarity=0.247  Sum_probs=273.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..+|+++|+++|.+++++|++||++++|+...++    +.+|+++| |+||||+||||||||++|+|||++|+|||+++|
T Consensus       380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy  454 (701)
T PLN02225        380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP  454 (701)
T ss_pred             CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEee
Confidence            5689999999999999999999999999973222    57899999 999999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + +|++||||||+|++|+        +++||++++ ++|.++.+|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus       455 s-tFlqRAyDQI~~Dval--------~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~  525 (701)
T PLN02225        455 S-AFLQRAYDQVVHDVDR--------QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVAT  525 (701)
T ss_pred             h-hHHHHHHHHHHHHHHh--------hcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence            6 8899999999999995        678999888 46777789999965 55799999999999999999999999999


Q ss_pred             HHh-CCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513          194 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (370)
Q Consensus       194 a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~  272 (370)
                      |+. .++|+|||+||..+..   ....+ .+++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||+
T Consensus       526 A~~~~~gPv~IR~pRg~~~~---~~~~~-~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdl  601 (701)
T PLN02225        526 AAYVTDRPVCFRFPRGSIVN---MNYLV-PTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADA  601 (701)
T ss_pred             HHhcCCCCEEEEecccccCC---CCcCC-CCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            985 5699999998864321   00001 124668899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017513          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE  350 (370)
Q Consensus       273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~  350 (370)
                      +|+||||++.|.++++++++|||+|||+. ||||++|++++.+++....+.+++++|++|.|+++  .++|.+.+|||++
T Consensus       602 r~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae  680 (701)
T PLN02225        602 RFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGH  680 (701)
T ss_pred             CCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHH
Confidence            99999999999999999999999999997 99999999999987521013578999999999874  5788889999999


Q ss_pred             HHHHHHHHHHhcccc
Q 017513          351 DIVRAAKRACYRSVP  365 (370)
Q Consensus       351 ~I~~~i~~~l~~~~~  365 (370)
                      +|+++|+++++..++
T Consensus       681 ~I~~~i~~~l~~~~~  695 (701)
T PLN02225        681 HIAATALSLLGRTRE  695 (701)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999965544

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=100.00  E-value=7e-62  Score=484.04  Aligned_cols=308  Identities=24%  Similarity=0.328  Sum_probs=278.5

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~  113 (370)
                      ....+|.++|+++|.+++++|++||.+++.|..-+|    +..|+++| |+||||+||||||+|++|+|||.+|+||+++
T Consensus       313 ~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtG----L~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvva  387 (627)
T COG1154         313 PSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTG----LVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA  387 (627)
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC----hHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence            456779999999999999999999999999984333    57899999 9999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLL  191 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l  191 (370)
                      +|+ +|+||||||+.||+|        ++++||+|+. |+|..|.||+||++.+ +++||+||||+|++|+|.+|++.++
T Consensus       388 IYS-TFLQRAYDQliHDva--------iqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml  458 (627)
T COG1154         388 IYS-TFLQRAYDQLIHDVA--------IQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML  458 (627)
T ss_pred             Eec-HHHHHHHHHHHHHHH--------hccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence            986 999999999999999        6999999998 6999999999997655 8999999999999999999999999


Q ss_pred             HHHHhCC-CCEEEEecccccCCCCCCcccccC-CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeE
Q 017513          192 KAAIRDP-DPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV  269 (370)
Q Consensus       192 ~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V  269 (370)
                      ++++.++ +|+.||.||+-...      .... ....+++|+++++++|.|++|+++|.++..|++|++.|.++||+++|
T Consensus       459 ~ta~~~~~gP~AiRyPrg~~~~------~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TV  532 (627)
T COG1154         459 YTALAQDDGPVAIRYPRGNGVG------VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTV  532 (627)
T ss_pred             HHHHhcCCCCeEEEecCCCCCC------CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEE
Confidence            9999986 89999988752211      1111 12347899999999999999999999999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCC
Q 017513          270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVP  347 (370)
Q Consensus       270 i~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl  347 (370)
                      ||++++||+|++.|++++++++.+||+||+.+.||+|+.|+++|.++++   ..+++++|++|.|+++  .+++...+||
T Consensus       533 vd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gL  609 (627)
T COG1154         533 VDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGL  609 (627)
T ss_pred             EcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999998763   4799999999999885  5788888999


Q ss_pred             CHHHHHHHHHHHHhccc
Q 017513          348 QVEDIVRAAKRACYRSV  364 (370)
Q Consensus       348 ~~~~I~~~i~~~l~~~~  364 (370)
                      |++.|+++|.+.++...
T Consensus       610 d~~~i~~~i~~~l~~~~  626 (627)
T COG1154         610 DAEGIARRILEWLKARS  626 (627)
T ss_pred             CHHHHHHHHHHHHhhcc
Confidence            99999999999987653

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=6.5e-61  Score=498.58  Aligned_cols=303  Identities=22%  Similarity=0.340  Sum_probs=272.6

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..+++++|+++|.+++++|++|+++++|+..+++    +.+|+++| |+||||+||+||||+++|+|||++|++||+++|
T Consensus       309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~  383 (617)
T TIGR00204       309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIY  383 (617)
T ss_pred             CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEec
Confidence            4679999999999999999999999999964333    57899999 999999999999999999999999999999996


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + .|++||+|||++++|+        +++||+++++ +|..+++|+||++.. +++|+++|||+|++|+|+.|++.++++
T Consensus       384 a-~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~  454 (617)
T TIGR00204       384 S-TFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT  454 (617)
T ss_pred             H-HHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence            5 8889999999999995        6899999985 677777999997644 699999999999999999999999999


Q ss_pred             HHhCC-CCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513          194 AIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (370)
Q Consensus       194 a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~  272 (370)
                      |++.+ +|+|||++|..++..     ..+..++.+++|+++++++|.|++||++|++++.|++|++.|+++||+++|||+
T Consensus       455 a~~~~~~Pv~ir~~r~~~~~~-----~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~  529 (617)
T TIGR00204       455 GYHYDDGPIAVRYPRGNAVGV-----ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDA  529 (617)
T ss_pred             HHhCCCCCEEEEEccCCcCCc-----ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            99975 999999987644210     011224668899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017513          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE  350 (370)
Q Consensus       273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~  350 (370)
                      +||+|||+++|.++++++++|||+|||+..||||++|++++.+++   ++.++.++|++|.|+++  .++|.+.+|||++
T Consensus       530 ~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~  606 (617)
T TIGR00204       530 RFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGLDTA  606 (617)
T ss_pred             CcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHH
Confidence            999999999999999999999999999999999999999999875   35799999999999875  4688899999999


Q ss_pred             HHHHHHHHHH
Q 017513          351 DIVRAAKRAC  360 (370)
Q Consensus       351 ~I~~~i~~~l  360 (370)
                      +|+++|++++
T Consensus       607 ~I~~~i~~~~  616 (617)
T TIGR00204       607 GMEAKILAWL  616 (617)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=4e-60  Score=492.06  Aligned_cols=309  Identities=21%  Similarity=0.282  Sum_probs=270.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..++.++|+++|.+++++|++||++++|++   |.+++ ..|+++| |+||||+||+||||+++|+|||+.|+|||+++|
T Consensus       355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f  429 (677)
T PLN02582        355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY  429 (677)
T ss_pred             CcCHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence            357999999999999999999999999987   44444 5899999 999999999999999999999999999999996


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + .|++||||||++++|        .+++||+++.. +|..+++|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus       430 s-~Fl~RA~DQI~~dva--------l~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~  500 (677)
T PLN02582        430 S-SFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT  500 (677)
T ss_pred             H-HHHHHHHHHHHHHHH--------hcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence            5 888999999999999        47899999985 6888889999976 45799999999999999999999999999


Q ss_pred             HHhC-CCCEEEEecccccCCCCCCcccccCC--CcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513          194 AIRD-PDPVVFLENELLYGESFPVSAEVLDS--SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI  270 (370)
Q Consensus       194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~--~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi  270 (370)
                      |++. ++|+|||++|.... .    ..++.+  ++.+++|+++++++|.|++|||+|++++.|++|++.|+++||+++||
T Consensus       501 al~~~~gPv~IR~pr~~~~-~----~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI  575 (677)
T PLN02582        501 AAAIDDRPSCFRYPRGNGI-G----VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA  575 (677)
T ss_pred             HHhCCCCCEEEEEecCCCC-C----cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence            9975 59999998875311 0    011211  24578999999999999999999999999999999999999999999


Q ss_pred             EeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCC
Q 017513          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQ  348 (370)
Q Consensus       271 ~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~  348 (370)
                      |++|++|||++.|.+++++++.|||+|||+. ||||+.|++++.+++......++.++|++|.|+.+  .++|.+.+|||
T Consensus       576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~  654 (677)
T PLN02582        576 DARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLT  654 (677)
T ss_pred             EcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcC
Confidence            9999999999999888877888999999998 99999999999986421112478999999999874  57888999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 017513          349 VEDIVRAAKRACYRSV  364 (370)
Q Consensus       349 ~~~I~~~i~~~l~~~~  364 (370)
                      +++|+++|+++++.++
T Consensus       655 ~e~I~~~i~~~l~~~~  670 (677)
T PLN02582        655 PSHIAATVLNVLGQTR  670 (677)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999996443

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=1.5e-59  Score=489.73  Aligned_cols=310  Identities=23%  Similarity=0.304  Sum_probs=274.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEccc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~  116 (370)
                      .+|+++|+++|.+++++||+++++++|+..+.   + ..+|+++| |+||||+||+||+|+++|+|||+.|+|||+++|+
T Consensus       319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~-~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~  393 (641)
T PRK12571        319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---G-LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS  393 (641)
T ss_pred             hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---C-hHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEehH
Confidence            57999999999999999999999999997432   2 47899999 9999999999999999999999999999999965


Q ss_pred             chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                       .|++||+|||++++|        .+++||++++ ++|..+++|+||++ .++++||++|||+|++|+|+.|++.++++|
T Consensus       394 -~Fl~ra~dQI~~~~a--------~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a  464 (641)
T PRK12571        394 -TFLQRGYDQLLHDVA--------LQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA  464 (641)
T ss_pred             -HHHHHHHHHHHHHHh--------hcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence             888999999999999        4789999998 46777889999976 447999999999999999999999999999


Q ss_pred             HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       195 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      ++. ++|+|||++|..+..     ..++.+++.+++||+.++++|.|++|||+|++++.|++|++.|+++||+++|||++
T Consensus       465 ~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~  539 (641)
T PRK12571        465 AAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPR  539 (641)
T ss_pred             HhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            995 899999998764321     11223345678999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVED  351 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~  351 (370)
                      ||+|||++.+.+++ ++.+++|+|||+..||||++|++.+.++++..++.++.++|++|.|+++  .+++.+.+|+|+++
T Consensus       540 ~lkPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~  618 (641)
T PRK12571        540 FVKPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPD  618 (641)
T ss_pred             cCCCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHH
Confidence            99999999986655 5558999999999999999999999998765456799999999999875  46788889999999


Q ss_pred             HHHHHHHHHhccccc
Q 017513          352 IVRAAKRACYRSVPM  366 (370)
Q Consensus       352 I~~~i~~~l~~~~~~  366 (370)
                      |+++|++++++.+++
T Consensus       619 I~~~i~~~l~~~~~~  633 (641)
T PRK12571        619 IAAAVTGALARLSGV  633 (641)
T ss_pred             HHHHHHHHHHhccCC
Confidence            999999999877765

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=1.5e-58  Score=478.26  Aligned_cols=299  Identities=20%  Similarity=0.225  Sum_probs=264.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..+++++|+++|.+++++|++++++++|++.   .+++ .+|.++| |+||||+||+||||+++|+|||++|+|||+.+|
T Consensus       277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~---~~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f  351 (581)
T PRK12315        277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG---VFGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN  351 (581)
T ss_pred             CcCHHHHHHHHHHHHhccCCCEEEEeCcccc---ccCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence            4579999999999999999999999999873   3443 7899999 999999999999999999999999999999887


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + .|++||+|||++++|+        +++||++++. +|.++ +|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus       352 s-~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~  421 (581)
T PRK12315        352 S-TFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEW  421 (581)
T ss_pred             H-HHHHHHHHHHHHHHHh--------cCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence            5 7889999999999994        7899999985 56665 9999965 45799999999999999999999999999


Q ss_pred             HHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEE
Q 017513          194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN  271 (370)
Q Consensus       194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~  271 (370)
                      |++. ++|+|||++|..++..       ......+..+++.++++|.|++|||+|++++.|++|++.|+++ ||+++|||
T Consensus       422 a~~~~~gP~~ir~~r~~~~~~-------~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid  494 (581)
T PRK12315        422 ALTQHEHPVAIRVPEHGVESG-------PTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLIN  494 (581)
T ss_pred             HHhCCCCcEEEEEcCCccCCC-------CCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEe
Confidence            9986 7999999988755421       1111234456889999999999999999999999999999999 99999999


Q ss_pred             eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017513          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV  349 (370)
Q Consensus       272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~  349 (370)
                      ++|++|||++.+.++.++++.+||+|||+..||||++|++++.+++     .++.++|++|.|+.+  .++|++.+|+|+
T Consensus       495 ~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~  569 (581)
T PRK12315        495 PKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTP  569 (581)
T ss_pred             cCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCH
Confidence            9999999999998888778889999999999999999999998753     478999999988864  468889999999


Q ss_pred             HHHHHHHHHHHh
Q 017513          350 EDIVRAAKRACY  361 (370)
Q Consensus       350 ~~I~~~i~~~l~  361 (370)
                      ++|+++|+++++
T Consensus       570 ~~I~~~i~~~l~  581 (581)
T PRK12315        570 EQIVEDILSVLK  581 (581)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=3.7e-57  Score=469.35  Aligned_cols=297  Identities=27%  Similarity=0.362  Sum_probs=265.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEccc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~  116 (370)
                      .+||++|+++|.+++++||+++++++|+..++   + ...|+++| |+||||+||+||+|+++|+|||++|++||+++|+
T Consensus       279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~-~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~  353 (580)
T PRK05444        279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---G-LVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYS  353 (580)
T ss_pred             ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---C-HHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeH
Confidence            67999999999999999999999999986332   2 35699999 9999999999999999999999999999999965


Q ss_pred             chHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                       .|++||+|||++++|+        +++||+++++ +|..+++|+||++ .++++||++||++|++|+|++|++.+++++
T Consensus       354 -~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a  424 (580)
T PRK05444        354 -TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA  424 (580)
T ss_pred             -HHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence             7888999999999994        7899999985 6777789999966 447999999999999999999999999999


Q ss_pred             HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       195 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      ++. ++|+|||++|..++..      ...+.+.+++|+++++++|.|++|||+|++++.|++|++.|+    +++|||++
T Consensus       425 ~~~~~~P~~ir~~r~~~~~~------~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~  494 (580)
T PRK05444        425 LAYDDGPIAIRYPRGNGVGV------ELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDAR  494 (580)
T ss_pred             HhCCCCcEEEEecCCCCCCC------CCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeC
Confidence            976 8999999987654310      011246688999999999999999999999999999999995    89999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVED  351 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~  351 (370)
                      |++|||++.+.+++++++++||+|||+..||||+++++++.++++   +.|+.++|++|.|+++  .++|++++|+|+++
T Consensus       495 ~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~  571 (580)
T PRK05444        495 FVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEG  571 (580)
T ss_pred             cCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHH
Confidence            999999999999999999999999999999999999999998754   4689999999998875  46789999999999


Q ss_pred             HHHHHHHHH
Q 017513          352 IVRAAKRAC  360 (370)
Q Consensus       352 I~~~i~~~l  360 (370)
                      |+++|++++
T Consensus       572 I~~~i~~~~  580 (580)
T PRK05444        572 IARRILELL  580 (580)
T ss_pred             HHHHHHhhC
Confidence            999998753

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=2.5e-55  Score=452.62  Aligned_cols=273  Identities=23%  Similarity=0.344  Sum_probs=237.6

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      .++++++|+++|.+++++||+|+++++|++.  |+.  +..|+++| |+||||+||+||||+++|+|||++|+|||+++|
T Consensus       356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt~--~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f  430 (641)
T PLN02234        356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GTM--LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY  430 (641)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Ccc--hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence            3689999999999999999999999999973  332  56788899 999999999999999999999999999999996


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + .|++||||||++++|        .+++||++++ ++|..+++|+||++.+ ++++|++|||+|++|+|+.|++.++++
T Consensus       431 s-~Fl~RA~DQI~~dva--------~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~  501 (641)
T PLN02234        431 S-SFMQRAYDQVVHDVD--------LQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT  501 (641)
T ss_pred             H-HHHHHHHHHHHHHHh--------hcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence            5 889999999999999        4789999998 5677777999997644 799999999999999999999999999


Q ss_pred             HHhC-CCCEEEEecccccCCCCCCcccccC--CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513          194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI  270 (370)
Q Consensus       194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi  270 (370)
                      ++.. ++|+|||++|..+...     .++.  ..+.+++|+++++++|.|++||++|++++.|++|++.|+++||+++||
T Consensus       502 a~~~~~~Pv~ir~~R~~~~~~-----~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VI  576 (641)
T PLN02234        502 AAAIDDRPSCFRYHRGNGIGV-----SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVA  576 (641)
T ss_pred             HHhCCCCCEEEEeeccccccc-----ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEE
Confidence            8865 5999999998754321     1111  134578999999999999999999999999999999999999999999


Q ss_pred             EeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017513          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI  328 (370)
Q Consensus       271 ~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i  328 (370)
                      |++|++|||.+.+.+++++++.|||+|||.. ||||++|++.+.+++......++.|.
T Consensus       577 d~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~~~~~~~~~  633 (641)
T PLN02234        577 DARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGKLKVYRT  633 (641)
T ss_pred             ecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCCCCceEEEE
Confidence            9999999999999887777888999999987 99999999999998642223355543

>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]

Probab=100.00  E-value=3.4e-53  Score=378.00  Aligned_cols=330  Identities=35%  Similarity=0.630  Sum_probs=302.0

Q ss_pred             cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513           25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (370)
Q Consensus        25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA  104 (370)
                      ++...|.. .+++..-++++++|.-.++.||+-+++++|++ .+|+|..+.+++++|+.+|+||++++||.++|+.+|+|
T Consensus        30 ~~~~e~ge-~~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~a  107 (362)
T KOG0525|consen   30 STTLEAGE-KKKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLA  107 (362)
T ss_pred             CCcccccc-cccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhh
Confidence            34444433 56788889999999999999999999999997 78999999999999999999999999999999999999


Q ss_pred             ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCC
Q 017513          105 YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYS  183 (370)
Q Consensus       105 ~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d  183 (370)
                      ..|.+.+.++++++++..|+|||.|.+++.+|+||-+.++ .++++.+.|..|..+.+|||+.+++|.+.||++|+.|.+
T Consensus       108 a~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprs  187 (362)
T KOG0525|consen  108 AMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRS  187 (362)
T ss_pred             hcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCC
Confidence            9999999999999999999999999999999999999998 578887788888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHH-h
Q 017513          184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-K  262 (370)
Q Consensus       184 ~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~-~  262 (370)
                      |.|+++++..++++++|+++.+||.||+..   ..++|..+|.+|+++++++++|+|+|+|+||..++.++|++-.-+ +
T Consensus       188 p~qakglllscirdpnp~iffepk~lyr~a---~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek  264 (362)
T KOG0525|consen  188 PRQAKGLLLSCIRDPNPCIFFEPKILYRQA---VEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEK  264 (362)
T ss_pred             cchhhceeeeeccCCCceEEechHHHHHHh---hhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHh
Confidence            999999999999999999999999999863   356788899999999999999999999999999999999887654 4


Q ss_pred             cCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHH
Q 017513          263 EGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLE  342 (370)
Q Consensus       263 ~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~  342 (370)
                      .|++++|||+++|-|||.|.+.+++.|++++++-.|.-.+||+|++|++.+.+++|-+|..|+.|++.-|.|.|+  ..+
T Consensus       265 ~giscevidlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~--vfe  342 (362)
T KOG0525|consen  265 LGISCEVIDLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH--VFE  342 (362)
T ss_pred             cCCceEEEeeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc--ccc
Confidence            499999999999999999999999999999999999999999999999999999998899999999999988764  333


Q ss_pred             HHhCCCHHHHHHHHHHHHh
Q 017513          343 RMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       343 ~~~gl~~~~I~~~i~~~l~  361 (370)
                      -.|.+|...|.++|++.++
T Consensus       343 pfy~ptk~ki~daik~~vn  361 (362)
T KOG0525|consen  343 PFYMPTKNKILDAIKKTVN  361 (362)
T ss_pred             ccccCcHhHHHHHHHHhcc
Confidence            4678999999999997653

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=100.00  E-value=1.7e-49  Score=415.52  Aligned_cols=301  Identities=19%  Similarity=0.171  Sum_probs=244.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY  105 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~  105 (370)
                      .+.|....++.++|++|+++|.++++++|+++++++|++.++.+.. -...|.++| |+||||+||+||+|+++|+|||+
T Consensus       339 ~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~  417 (653)
T TIGR00232       339 LPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIAL  417 (653)
T ss_pred             hhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHH
Confidence            3455433567899999999999999999999999999975544310 011277888 99999999999999999999999


Q ss_pred             -cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017513          106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       106 -~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P  181 (370)
                       .|++||++||+ .|++|+++|||+. |+        +++||++++. +|. .+++|+|| ..+++++||++|||+|+.|
T Consensus       418 ~gG~~p~~~tf~-~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~P  487 (653)
T TIGR00232       418 HGGFKPYGGTFL-MFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRP  487 (653)
T ss_pred             cCCCeEEEEEhH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEee
Confidence             68999999987 7788999999977 74        7899999985 554 46689999 3455899999999999999


Q ss_pred             CCHHHHHHHHHHHH-hCCCCEEEEecccccCCCCCCcccccCCC-cccccCceEEe--eeCCcEEEEEechhHHHHHHHH
Q 017513          182 YSSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAA  257 (370)
Q Consensus       182 ~d~~e~~~~l~~a~-~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk~~vl--~~g~dv~Iia~G~~~~~al~Aa  257 (370)
                      +|+.|+..++++++ +.++|+|||.+|...+.       +.+.+ ..+..|+ +++  ++|.|++||++|+++..|++|+
T Consensus       488 aD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~-------~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa  559 (653)
T TIGR00232       488 CDGNETAAAWKYALESQDGPTALILSRQNLPQ-------LEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAA  559 (653)
T ss_pred             CCHHHHHHHHHHHHhcCCCcEEEEEcCCccCC-------CCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHH
Confidence            99999999999999 56899999988653321       11122 3466776 666  6789999999999999999999


Q ss_pred             HHHHhcCCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCC
Q 017513          258 EILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP  334 (370)
Q Consensus       258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~  334 (370)
                      +.|+++||+++|||++|++|||.+.   +.+++++++.+|++|||+. +||.    ..+        +....++|+ |.|
T Consensus       560 ~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~----~~~--------~~~~~~igv-d~f  625 (653)
T TIGR00232       560 KKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY----KYA--------GLVGAILGM-DSF  625 (653)
T ss_pred             HHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH----Hhc--------CCcceEEEe-cCC
Confidence            9999999999999999999997755   7777777788999999987 4442    111        111157888 788


Q ss_pred             CCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          335 MPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       335 ~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      +.+  .++|.+++|+|+++|+++|++++
T Consensus       626 g~sg~~~~L~~~~Glt~e~I~~~i~~~~  653 (653)
T TIGR00232       626 GESAPGDKLFEEFGFTVENVVAKAKKLL  653 (653)
T ss_pred             cCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence            764  57888999999999999998763

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK05899 transketolase; Reviewed

Probab=100.00  E-value=2e-49  Score=414.96  Aligned_cols=289  Identities=22%  Similarity=0.222  Sum_probs=237.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHH------HHhCCCcEeechhhHHHHHHHHHHHhccC-
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL------EKYGPERVLDTPITEAGFTGIGVGAAYYG-  107 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~------~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-  107 (370)
                      +.+++|++|+++|.+++++||+++++++|++.+++.    ..+.      ++| |+||||+||+||+|+++|+|||+.| 
T Consensus       317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~----~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~  391 (624)
T PRK05899        317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNT----KIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG  391 (624)
T ss_pred             cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc----ccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence            456789999999999999999999999999743321    2233      467 8999999999999999999999999 


Q ss_pred             CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCC-CCCCCcc-hHHHHHHHccCCCcEEEeeCCH
Q 017513          108 LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQH-SHCYAAWYASVPGLKVLSPYSS  184 (370)
Q Consensus       108 ~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~-~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~  184 (370)
                      ++||++||+ .|++|+++||++. ++        +++||++++ ++|.+ +++|+|| +.+++++||++|||+|++|+|+
T Consensus       392 ~~pv~~t~~-~F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~  461 (624)
T PRK05899        392 FIPFGGTFL-VFSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADA  461 (624)
T ss_pred             CeEEEEEcH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCH
Confidence            999999987 5679999999985 63        678999997 46764 5689998 3355799999999999999999


Q ss_pred             HHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccC--CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHH
Q 017513          185 EDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA  261 (370)
Q Consensus       185 ~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~  261 (370)
                      +|++.+++++++. ++|+|||++|...+       .+.+  ..+.++.|+ +++++|.|++||++|++++.|++|++.|+
T Consensus       462 ~e~~~~l~~a~~~~~~P~~ir~~r~~~~-------~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~  533 (624)
T PRK05899        462 NETAAAWKYALERKDGPSALVLTRQNLP-------VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELE  533 (624)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeCCCCC-------CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHH
Confidence            9999999999998 89999998764221       1111  124577886 88899999999999999999999999999


Q ss_pred             hcCCceeEEEeccccCCCHHH---HHHHH-hcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017513          262 KEGISAEVINLRSIRPLDRST---INASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY  337 (370)
Q Consensus       262 ~~Gi~v~Vi~~~~l~P~d~~~---i~~~~-~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~  337 (370)
                      ++||+++|||++||+|||.+.   +...+ .....++++|++.. +||.    .++        +.++.++|++| |+.+
T Consensus       534 ~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~~----~~~--------~~~~~~iGv~~-f~~~  599 (624)
T PRK05899        534 AEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGWY----KYV--------GLDGKVLGIDT-FGAS  599 (624)
T ss_pred             hcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cchh----hhc--------CCCceEEECCC-CCCC
Confidence            999999999999999999993   44445 33456788887665 6661    122        33678999999 8764


Q ss_pred             --HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          338 --AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       338 --~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                        .++|.+++|+|+++|+++|++++
T Consensus       600 g~~~~l~~~~gl~~~~I~~~i~~~~  624 (624)
T PRK05899        600 APADELFKEFGFTVENIVAAAKELL  624 (624)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence              57888999999999999998763

>PRK12753 transketolase; Reviewed

Probab=100.00  E-value=1.1e-48  Score=409.13  Aligned_cols=294  Identities=20%  Similarity=0.158  Sum_probs=238.0

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc-cCCeeE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPV  111 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~-~G~rp~  111 (370)
                      ++++++|++++++|.++++++|+++++++|++.++.+ +.-...|.++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus       352 ~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~  430 (663)
T PRK12753        352 PAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY  430 (663)
T ss_pred             ccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence            5678999999999999999999999999999865443 12235688888 99999999999999999999999 789999


Q ss_pred             EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHH
Q 017513          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDAR  188 (370)
Q Consensus       112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~  188 (370)
                      ++||+ .|++|++||||+. |+        +++||++++. +|.+ ++||+||+ .+|+++||.+|||+|+.|+|++|+.
T Consensus       431 ~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~  500 (663)
T PRK12753        431 TATFL-MFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAA  500 (663)
T ss_pred             EEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHH
Confidence            99987 7788999999976 74        7899999974 5654 66999993 4668999999999999999999999


Q ss_pred             HHHHHHHh-CCCCEEEEecccccCCCCCCcccccCC---CcccccCceEEeeeCC---cEEEEEechhHHHHHHHHHHHH
Q 017513          189 GLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEILA  261 (370)
Q Consensus       189 ~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~---~~~~~~Gk~~vl~~g~---dv~Iia~G~~~~~al~Aa~~L~  261 (370)
                      .+++++++ .++|+|||.+|.-.    +   .++..   ...+..|+ ++++++.   |++||++|+++..|++|++.|+
T Consensus       501 ~~~~~al~~~~gP~~irl~R~~~----~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~  572 (663)
T PRK12753        501 VAWKLAIERHNGPTALILSRQNL----A---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLT  572 (663)
T ss_pred             HHHHHHHhcCCCCEEEEecCCCC----C---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence            99999998 58999999876421    1   11111   12355665 7788754   9999999999999999999999


Q ss_pred             hcCCceeEEEeccccCCCHHHH--HHHHhc--CCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017513          262 KEGISAEVINLRSIRPLDRSTI--NASVRK--TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY  337 (370)
Q Consensus       262 ~~Gi~v~Vi~~~~l~P~d~~~i--~~~~~~--~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~  337 (370)
                      ++||+++|||++|++|||.+.+  ++.+..  ..+.|++|+|.         ...+.+.    .+.+..++|+ |.|+.+
T Consensus       573 ~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~---------~~~~~~~----~~~~~~~iGv-d~Fg~s  638 (663)
T PRK12753        573 AEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI---------ADYWYKY----VGLKGAIIGM-TGFGES  638 (663)
T ss_pred             hcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh---------HHHHHHH----cCCCCeEEEe-CCCcCc
Confidence            9999999999999999999976  222221  12349999982         2333332    1346678998 678764


Q ss_pred             --HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          338 --AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       338 --~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                        .++|.+++|+|+++|++++++++
T Consensus       639 g~~~~l~~~~Glt~~~Iv~~i~~~~  663 (663)
T PRK12753        639 APADKLFPFFGFTVENIVAKAKKLL  663 (663)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence              57888999999999999998763

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-48  Score=387.56  Aligned_cols=313  Identities=21%  Similarity=0.283  Sum_probs=255.9

Q ss_pred             cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513           25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (370)
Q Consensus        25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA  104 (370)
                      .-+|.|..+++..++|++|+++|.++++.+|++|.+++|+..++.    ++-|.++| |+|||+|||+||||+++|+|+|
T Consensus       308 ~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~----td~~~~~~-p~R~i~~giaEq~mv~ia~G~a  382 (632)
T KOG0523|consen  308 KSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTL----TDFFPKRF-PERFIECGIAEQNMVGIANGIA  382 (632)
T ss_pred             ccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCch----hhhccccC-ccceEEEeeehhhhHHhhhchh
Confidence            345899998888999999999999999999999999999984432    44456677 9999999999999999999999


Q ss_pred             ccCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcch-HHHHHHHccCCCcEEEe
Q 017513          105 YYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHS-HCYAAWYASVPGLKVLS  180 (370)
Q Consensus       105 ~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs-~~~~a~~~~iP~~~V~~  180 (370)
                      ..|. +||+.||+ .|++||+||+|+++-         .+.+++.+.  .++..|+||+||+ .+|+++||++||++|++
T Consensus       383 ~~g~~~Pf~~tf~-~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~  452 (632)
T KOG0523|consen  383 CRGRTIPFCGTFA-AFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFR  452 (632)
T ss_pred             cCCCccchhHHHH-HHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEe
Confidence            9998 99999986 899999999999763         455666665  3456788999994 46689999999999999


Q ss_pred             eCCHHHHHHHHHHHHhCC-CCEEEEecccccCCCCCCcccccCCCcccccCceE-EeeeCC-cEEEEEechhHHHHHHHH
Q 017513          181 PYSSEDARGLLKAAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSKIVGLSLKAA  257 (370)
Q Consensus       181 P~d~~e~~~~l~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~-vl~~g~-dv~Iia~G~~~~~al~Aa  257 (370)
                      |+|..|+..++..|.+.+ .|++++.++.    ..+    .......+.+|++. +++++. ||++|++|+++++|++|+
T Consensus       453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~----~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA  524 (632)
T KOG0523|consen  453 PADGNETENAVATAANTKGTPSIRTLSRQ----NLP----IYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAA  524 (632)
T ss_pred             cCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc----ccCCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHH
Confidence            999999999999999975 5888876543    111    11223346778776 677776 999999999999999999


Q ss_pred             HHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC
Q 017513          258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP  336 (370)
Q Consensus       258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~  336 (370)
                      +.|+++||+++|+|++++||||..+|+++.+.++ ++.|+|+|+..||++.++...+...    -+..+..++. |.|+.
T Consensus       525 ~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~----~~~~~~~~~~-~~~~~  599 (632)
T KOG0523|consen  525 ELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY----PGILVPSLGV-DTFGR  599 (632)
T ss_pred             HHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc----CCccceeecc-ccCCc
Confidence            9999999999999999999999999998887765 7888888988788887776665432    1223445554 45544


Q ss_pred             --CHHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513          337 --YAANLERMAVPQVEDIVRAAKRACYRSVP  365 (370)
Q Consensus       337 --~~~~l~~~~gl~~~~I~~~i~~~l~~~~~  365 (370)
                        .+.+|.+.+|+|+++|++++++++..-++
T Consensus       600 sG~p~ell~~fGit~~~Ia~~a~~~~~~~~~  630 (632)
T KOG0523|consen  600 SGPPPELLKMFGITARHIAAAALSLIGKYRE  630 (632)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHHHhhhcc
Confidence              34677788999999999999999976654

>PLN02790 transketolase

Probab=100.00  E-value=8.3e-48  Score=402.80  Aligned_cols=301  Identities=18%  Similarity=0.156  Sum_probs=246.0

Q ss_pred             cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc
Q 017513           28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY  106 (370)
Q Consensus        28 ~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~  106 (370)
                      +.|...++..++|++++++|..+.+.+|+++++++|+..++.+. ..+..|+++|+|+||||+||+||||+++|+|||++
T Consensus       335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~  414 (654)
T PLN02790        335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALH  414 (654)
T ss_pred             hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhc
Confidence            44543456789999999999999999999999999998654432 12457888744999999999999999999999996


Q ss_pred             --CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEee
Q 017513          107 --GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       107 --G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P  181 (370)
                        |++||++||+ .|+.|+++|||+. |+        +++||++++. +|. .++||+||+ .+|+++||++||++|++|
T Consensus       415 G~G~~P~~~tf~-~F~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~P  484 (654)
T PLN02790        415 SSGLIPYCATFF-VFTDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRP  484 (654)
T ss_pred             CCCcEEEEEecH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeC
Confidence              5999999987 5667999999876 74        7899999984 454 467999994 466899999999999999


Q ss_pred             CCHHHHHHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCC-CcccccCceEEeeeC-----CcEEEEEechhHHHHH
Q 017513          182 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGLSL  254 (370)
Q Consensus       182 ~d~~e~~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~g-----~dv~Iia~G~~~~~al  254 (370)
                      +|++|+..+++++++ .++|+|||.+|.-.+       .++.. ...+..|+ ++++++     .|++||++|+++..|+
T Consensus       485 aD~~E~~~~l~~al~~~~gP~~irl~R~~~~-------~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al  556 (654)
T PLN02790        485 ADGNETAGAYKVAVTNRKRPTVLALSRQKVP-------NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAA  556 (654)
T ss_pred             CCHHHHHHHHHHHHHcCCCCEEEEecCCCCC-------CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHH
Confidence            999999999999998 579999998765211       11211 24467887 566663     7999999999999999


Q ss_pred             HHHHHHHhcCCceeEEEeccccCCCHHHHH---HHH-hcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEec
Q 017513          255 KAAEILAKEGISAEVINLRSIRPLDRSTIN---ASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG  330 (370)
Q Consensus       255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~---~~~-~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~  330 (370)
                      +|++.|+++||+++|||++|++|||.+...   +.+ ++++.+|++|+|+. +||++    ++        +.+..++|+
T Consensus       557 ~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~----~~--------~~~~~~igv  623 (654)
T PLN02790        557 KAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK----YV--------GSKGKVIGV  623 (654)
T ss_pred             HHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH----hc--------CCCceEEEe
Confidence            999999999999999999999999999754   566 56678999999986 77654    11        224467888


Q ss_pred             CCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          331 ADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       331 ~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                       |.|+.+  .++|.+++|+|+++|+++|++++
T Consensus       624 -d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~~  654 (654)
T PLN02790        624 -DRFGASAPAGILYKEFGFTVENVVAAAKSLL  654 (654)
T ss_pred             -CCCcCcCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence             888764  57888999999999999998764

>PTZ00089 transketolase; Provisional

Probab=100.00  E-value=6e-48  Score=404.32  Aligned_cols=299  Identities=17%  Similarity=0.164  Sum_probs=241.2

Q ss_pred             cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCC-CcEeechhhHHHHHHHHHHHhc
Q 017513           28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY  105 (370)
Q Consensus        28 ~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p-~r~~~~GIaE~~~v~~A~GlA~  105 (370)
                      +.|...++..++|++++++|.++++.+|+++++++|+..++.+. +-...|+++| | +||||+||+||||+++|+|||+
T Consensus       346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~  424 (661)
T PTZ00089        346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAA  424 (661)
T ss_pred             hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHH
Confidence            44433356788999999999999999999999999997544310 0013688888 8 8999999999999999999999


Q ss_pred             -cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEee
Q 017513          106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       106 -~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P  181 (370)
                       .|++||++||+ .|++|++||||+. |+        +++||++++. +|. .+++|+||+ ..|+++||++|||+|++|
T Consensus       425 ~~G~~P~~~tf~-~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~P  494 (661)
T PTZ00089        425 HGGFIPFGATFL-NFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRP  494 (661)
T ss_pred             cCCCeEEEEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEec
Confidence             78999999987 7889999999876 74        7899999973 453 567999994 466899999999999999


Q ss_pred             CCHHHHHHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeC---CcEEEEEechhHHHHHHHH
Q 017513          182 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKAA  257 (370)
Q Consensus       182 ~d~~e~~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g---~dv~Iia~G~~~~~al~Aa  257 (370)
                      +|+.|+..+++++++ .++|+|||++|.-.+       .++.....+..++.++++++   .|++||++|+++..|++|+
T Consensus       495 aD~~E~~~~l~~al~~~~gP~~irl~R~~~~-------~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa  567 (661)
T PTZ00089        495 ADGTETSGAYALALANAKTPTILCLSRQNTP-------PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAA  567 (661)
T ss_pred             CCHHHHHHHHHHHHHcCCCCEEEEecCCCCC-------CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHH
Confidence            999999999999995 579999998764211       12222233445566788874   7999999999999999999


Q ss_pred             HHHHhcCCceeEEEeccccCCCHHHHHHH---Hh-cCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCC
Q 017513          258 EILAKEGISAEVINLRSIRPLDRSTINAS---VR-KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV  333 (370)
Q Consensus       258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~---~~-~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~  333 (370)
                      +.|++ |++++|||++|++|||.+.+...   +. +...++++|+|+..| |.        . .      ...++|++| 
T Consensus       568 ~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g-~~--------~-~------~~~~igv~~-  629 (661)
T PTZ00089        568 KALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG-WE--------K-Y------SHVHVGISG-  629 (661)
T ss_pred             HHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH-HH--------h-c------CCeEEECCC-
Confidence            99999 99999999999999999976533   33 344689999997633 21        1 1      125799988 


Q ss_pred             CCCC--HHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513          334 PMPY--AANLERMAVPQVEDIVRAAKRACYR  362 (370)
Q Consensus       334 ~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~  362 (370)
                      |+.+  .++|.+++|+|+++|+++|++++.+
T Consensus       630 Fg~sg~~~~l~~~~Gl~~e~I~~~i~~~l~~  660 (661)
T PTZ00089        630 FGASAPANALYKHFGFTVENVVEKARALAAR  660 (661)
T ss_pred             ccccCCHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            7764  5788899999999999999998754

>PRK12754 transketolase; Reviewed

Probab=100.00  E-value=1.8e-46  Score=390.63  Aligned_cols=321  Identities=17%  Similarity=0.139  Sum_probs=245.8

Q ss_pred             hhcccCCCCcccccCCCCc-----CCcccc----cccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchh
Q 017513            7 QKVAAGGGSPVARIRPVVS-----NLRNYS----SAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKG   76 (370)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~   76 (370)
                      .++|+...++.++.++...     ..+.|.    .+++..++|++++++|.++++.+|+++++++|++.++.+ +.-...
T Consensus       316 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~  395 (663)
T PRK12754        316 KAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKA  395 (663)
T ss_pred             HHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCcccccccc
Confidence            3456666666655544221     113332    234567999999999999999999999999999855442 122356


Q ss_pred             HHHHhCCCcEeechhhHHHHHHHHHHHhc-cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC
Q 017513           77 LLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA  154 (370)
Q Consensus        77 ~~~~~~p~r~~~~GIaE~~~v~~A~GlA~-~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~  154 (370)
                      |.++| |+||||+||+||+|+++|+|||+ .|++||++||+ .|+.|+++|||++ |+        +++||++++. +|.
T Consensus       396 f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~th~gi  464 (663)
T PRK12754        396 INEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFL-MFVEYARNAVRMA-AL--------MKQRQVMVYTHDSI  464 (663)
T ss_pred             ccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeH-HHHHHHHHHHHHH-HH--------cCCCeEEEEECCcc
Confidence            77888 99999999999999999999999 68999999987 6788999999986 74        7899999885 565


Q ss_pred             C-CCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccC--C-Ccccc
Q 017513          155 A-AGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLP  228 (370)
Q Consensus       155 ~-~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~-~~~~~  228 (370)
                      + +++|+|| ..+++++||.+|||+|+.|+|+.|+..+++++++. ++|+|||++|.-.+       .++.  . ...+.
T Consensus       465 ~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p-------~~~~~~~~~~~~~  537 (663)
T PRK12754        465 GLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLA-------QQERTEEQLANIA  537 (663)
T ss_pred             ccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-------CCCCccchhhhcc
Confidence            4 6699999 34668999999999999999999999999999987 79999998764211       1111  1 13455


Q ss_pred             cCceEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC--eEEEEecCCC
Q 017513          229 IGKAKIEREGK---DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGFP  301 (370)
Q Consensus       229 ~Gk~~vl~~g~---dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~--~vvvvEe~~~  301 (370)
                      .|+ ++++++.   |++||++|+++..|++|++.|+++||+++|||++|++|||++.  .++.+-..+  ..|++|... 
T Consensus       538 ~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-  615 (663)
T PRK12754        538 RGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-  615 (663)
T ss_pred             cCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-
Confidence            666 7788764   9999999999999999999999999999999999999999982  333322221  348889864 


Q ss_pred             CCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          302 QHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       302 ~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      ..||..    ++..++      +  .+|+ |.|+.+  +++|.+++|+|+++|++++++++
T Consensus       616 ~~~w~~----~~~~~~------~--~igi-~~FG~Sg~~~~l~~~~G~t~e~I~~~~~~~~  663 (663)
T PRK12754        616 ADYWYK----YVGLNG------A--IVGM-TTFGESAPAELLFEEFGFTVDNVVAKAKALL  663 (663)
T ss_pred             ccchhh----hccCCC------C--EEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence            345543    332221      2  3677 566653  57888999999999999998764

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=100.00  E-value=9.4e-45  Score=382.05  Aligned_cols=313  Identities=16%  Similarity=0.133  Sum_probs=260.7

Q ss_pred             ccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCc---------------------cccchhHHHHhCCCcEee
Q 017513           33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGA---------------------YKISKGLLEKYGPERVLD   88 (370)
Q Consensus        33 ~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~---------------------~~~~~~~~~~~~p~r~~~   88 (370)
                      .++.+++|.||+++|.++++.   +++||.+++|++.+.|.                     ......|+++| |+||||
T Consensus       491 ~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e  569 (891)
T PRK09405        491 GEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQ  569 (891)
T ss_pred             CCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEE
Confidence            367899999999999999995   99999999999865553                     11124677888 999999


Q ss_pred             chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCC
Q 017513           89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGA  160 (370)
Q Consensus        89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~  160 (370)
                      +||+||+|++  +|+|+|++    |++||+.+|++|..+|++|||++++++        ++.++++++. +|.+ ++.|.
T Consensus       570 ~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~  641 (891)
T PRK09405        570 EGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGL  641 (891)
T ss_pred             echhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCcc
Confidence            9999999999  99999999    889999999876689999999999995        6788888885 4554 45788


Q ss_pred             cc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCC--CEEEEecccccCCCCCCcccccCCCcccccCce-
Q 017513          161 QH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA-  232 (370)
Q Consensus       161 tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~--Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~-  232 (370)
                      || ...+.+++|.+||++|+.|+|+.|+..+++++++    ..+  |.|++..    ..+... +..+ +++.+.+||. 
T Consensus       642 qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~----ne~~~~-~~~p-e~~~~~igKg~  715 (891)
T PRK09405        642 QHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM----NENYHQ-PAMP-EGAEEGILKGM  715 (891)
T ss_pred             cCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC----CCCCCC-CCCC-cccccccceEE
Confidence            88 4566789999999999999999999999999876    444  7778743    111111 1111 3566788886 


Q ss_pred             EEeeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHHHHHHHH---------hcCCeEEEE
Q 017513          233 KIEREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASV---------RKTNRLVTV  296 (370)
Q Consensus       233 ~vl~~g~------dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~~i~~~~---------~~~~~vvvv  296 (370)
                      +++++|.      |++|+++|.++++|++|++.|++ +||+++|+|+.|+||||.+.+....         .+++.|+++
T Consensus       716 y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~  795 (891)
T PRK09405        716 YKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQV  795 (891)
T ss_pred             EEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhh
Confidence            8899876      89999999999999999999998 7999999999999999999987766         567788999


Q ss_pred             ecCCCCCChH-------HHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccccc
Q 017513          297 EEGFPQHGVG-------AEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVPMA  367 (370)
Q Consensus       297 Ee~~~~GGlg-------~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~  367 (370)
                      |+|  .||++       +.+++.+++..    +.++.++|+ |.|+.+  .++|.++||+|+++|++++++++.+..++.
T Consensus       796 ee~--~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~~g~~~  868 (891)
T PRK09405        796 LKG--AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALADEGEID  868 (891)
T ss_pred             hcc--cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence            988  58888       89999998753    568999999 888754  578999999999999999999997766654

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=100.00  E-value=1.4e-44  Score=380.78  Aligned_cols=313  Identities=18%  Similarity=0.162  Sum_probs=259.5

Q ss_pred             ccccccHHHHHHHHHHHHHh---cCCCeEEecCCCCCCCCccc---------------------cchhHHHHhCCCcEee
Q 017513           33 AVKQMMVREALNSALDEEMS---ADPKVFLMGEEVGEYQGAYK---------------------ISKGLLEKYGPERVLD   88 (370)
Q Consensus        33 ~~~~~~~r~a~~~~L~~l~~---~~~~ivvi~~Dl~~~~g~~~---------------------~~~~~~~~~~p~r~~~   88 (370)
                      .++.++++.||++.|..|++   ..++||.+.+|.+.+.|.-+                     ....+++.+ |+||||
T Consensus       486 ~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie  564 (889)
T TIGR03186       486 EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILE  564 (889)
T ss_pred             CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEE
Confidence            35889999999999776665   57789999999986542111                     123456778 999999


Q ss_pred             chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC--CCCCC
Q 017513           89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA--AAGVG  159 (370)
Q Consensus        89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~--~~~~G  159 (370)
                      +||+||+|++  +|+|+|++    |++||+.+|++|..+|++|||+++ |+        ++.++++++ .+|.  .+++|
T Consensus       565 ~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG  635 (889)
T TIGR03186       565 EGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEG  635 (889)
T ss_pred             echhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCc
Confidence            9999999999  99999999    889999999876679999999988 64        578888887 4676  35689


Q ss_pred             Ccc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh------CCCCEEEEecccccCCCCCCcccccCCC-cccccCc
Q 017513          160 AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK  231 (370)
Q Consensus       160 ~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~------~~~Pv~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk  231 (370)
                      .|| +..+++++|.+||++|+.|+|+.|+..+++++++      .++|+|||..+..+..     +.+++++ ..+..|+
T Consensus       636 ~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~-----p~~~~~~~~~~~~gi  710 (889)
T TIGR03186       636 LQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ-----PSLPEDRLDAVRRGI  710 (889)
T ss_pred             ccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC-----CCcCCCcccchhcch
Confidence            888 5677899999999999999999999999999877      5789999976543311     1223232 2244444


Q ss_pred             --e-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC---C
Q 017513          232 --A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG---F  300 (370)
Q Consensus       232 --~-~vl~----~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~---~  300 (370)
                        + ++++    +|.|++|+++|.++++|++|++.|+++ ||+++|+|+.|+||||++.+.  ++++++++++|||   +
T Consensus       711 ~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~  788 (889)
T TIGR03186       711 LKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPH  788 (889)
T ss_pred             hheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccccc
Confidence              5 6777    578999999999999999999999998 999999999999999999886  6888999999998   9


Q ss_pred             CCCChHH-------------HHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513          301 PQHGVGA-------------EICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVP  365 (370)
Q Consensus       301 ~~GGlg~-------------~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~  365 (370)
                      +.|||++             .+++++.+.    .+.++.++|. |.|+.+  .+.|.++|++|+++|+.+++++|.+..+
T Consensus       789 v~ggLg~~~~p~va~~D~~~avae~i~~~----~p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~~g~  863 (889)
T TIGR03186       789 VAQALGATQGPVIAATDYVRAVPELIRAY----VPRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQALADDGL  863 (889)
T ss_pred             HhhhhCCCCCCeeeecchHHHHHHHHHhh----CCCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            9999999             999999875    3568999999 888764  5789999999999999999999977665


Q ss_pred             cc
Q 017513          366 MA  367 (370)
Q Consensus       366 ~~  367 (370)
                      +.
T Consensus       864 ~~  865 (889)
T TIGR03186       864 VA  865 (889)
T ss_pred             CC
Confidence            54

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=100.00  E-value=3.6e-41  Score=356.31  Aligned_cols=304  Identities=18%  Similarity=0.159  Sum_probs=241.2

Q ss_pred             ccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCc---------c------------ccchhHHHHhCCCcEee
Q 017513           33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGA---------Y------------KISKGLLEKYGPERVLD   88 (370)
Q Consensus        33 ~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~---------~------------~~~~~~~~~~~p~r~~~   88 (370)
                      .++.+++|.||+++|.++++.   +++||.+++|++.+.|.         |            .....|++.| |+|||+
T Consensus       499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie  577 (896)
T PRK13012        499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE  577 (896)
T ss_pred             CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence            367889999999999999987   99999999999854432         1            0123466788 999999


Q ss_pred             chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC
Q 017513           89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA  160 (370)
Q Consensus        89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~  160 (370)
                      +||+||+|++  +|+|+|++    |++||+.+|++|..+|++||+++++++        +..+++++..+ |. .+++|+
T Consensus       578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~  649 (896)
T PRK13012        578 EGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGL  649 (896)
T ss_pred             cchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCC
Confidence            9999999999  99999887    679999999866689999999999873        55678888764 44 366899


Q ss_pred             cc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C--CCCEEEEecccccCCCCCCcccccCC-CcccccCce
Q 017513          161 QH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA  232 (370)
Q Consensus       161 tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~  232 (370)
                      || ...+++++|.+||++|+.|+|+.|+..+++.+++    .  +.|+|||..+.-++.     +.+++. +..+..|+ 
T Consensus       650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-----p~~~~~~~~~i~kG~-  723 (896)
T PRK13012        650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-----PALPEGAEEGILKGM-  723 (896)
T ss_pred             CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-----CCCCccchhccccCc-
Confidence            99 3455799999999999999999999999999873    2  579999976543321     112222 34566677 


Q ss_pred             EEe---eeCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChH--
Q 017513          233 KIE---REGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG--  306 (370)
Q Consensus       233 ~vl---~~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg--  306 (370)
                      +++   +++.|++|+++|+++++|++|++.|+++ ||+++|+|++|++|||.+.+..           |+|+..||++  
T Consensus       724 y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~  792 (896)
T PRK13012        724 YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEA  792 (896)
T ss_pred             EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccc
Confidence            555   3467999999999999999999999999 9999999999999999997732           5555555555  


Q ss_pred             --H---------------------HHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          307 --A---------------------EICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       307 --~---------------------~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                        +                     .+++.+.+.    .+.++.++|+ |.|+.+  .++|.++||+|+++|+++++++|.
T Consensus       793 ~~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La  867 (896)
T PRK13012        793 RVPYVTQCLAGTRGPVVAATDYVRAVPEQIRAF----VPARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALA  867 (896)
T ss_pred             cccHHHHhhcccCCCeEEecchHHHHHHHHHHh----CCCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence              3                     566666553    3568889998 777754  578999999999999999999997


Q ss_pred             cccccc
Q 017513          362 RSVPMA  367 (370)
Q Consensus       362 ~~~~~~  367 (370)
                      +..++.
T Consensus       868 ~~g~~~  873 (896)
T PRK13012        868 DDGEVE  873 (896)
T ss_pred             hcCCCC
Confidence            766554

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

Probab=100.00  E-value=7.2e-42  Score=300.55  Aligned_cols=166  Identities=58%  Similarity=1.028  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEcccchH
Q 017513           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF  119 (370)
Q Consensus        41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f  119 (370)
                      ++++++|.+++++|++++++++|++..+|++..+++|+++| |+ ||||+||+||+|+++|+|||++|++||+++.++.|
T Consensus         1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F   79 (167)
T cd07036           1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF   79 (167)
T ss_pred             CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence            37899999999999999999999986677777789999999 88 99999999999999999999999999999434578


Q ss_pred             HHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCC
Q 017513          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD  199 (370)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~  199 (370)
                      ++|++|||++++|+++|+++|+.++||++++++|..+++|+||+++++++||++|||+|++|+|+.|++.++++++++++
T Consensus        80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~  159 (167)
T cd07036          80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD  159 (167)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999997665667899999999999999999999999999999999999999999


Q ss_pred             CEEEEecc
Q 017513          200 PVVFLENE  207 (370)
Q Consensus       200 Pv~i~~~~  207 (370)
                      |+++++||
T Consensus       160 P~~~~e~k  167 (167)
T cd07036         160 PVIFLEHK  167 (167)
T ss_pred             cEEEEecC
Confidence            99999875

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.4e-36  Score=301.18  Aligned_cols=324  Identities=19%  Similarity=0.202  Sum_probs=255.2

Q ss_pred             chhhcccCCCCcccccCCCCcC-----CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHH
Q 017513            5 IRQKVAAGGGSPVARIRPVVSN-----LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLL   78 (370)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~   78 (370)
                      .++++|+..+++.+++.+....     .+.|..+++.+.+|++++++|..+....|+++..++||+.++.+. +....|.
T Consensus       317 y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~  396 (663)
T COG0021         317 YKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFS  396 (663)
T ss_pred             HHhhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCC
Confidence            4789999999999999988752     255555445589999999999999999999999999999765542 2223343


Q ss_pred             -HHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-
Q 017513           79 -EKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-  154 (370)
Q Consensus        79 -~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-  154 (370)
                       +.| ++|++..||+|++|.+++.|||++| ++||..||. .|+.++..++|+.+         ++++|++++.. +++ 
T Consensus       397 ~~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggTFl-vFsdY~r~AiRlaA---------Lm~l~~~~V~THDSIg  465 (663)
T COG0021         397 PENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFL-VFSDYARPAVRLAA---------LMGLPVIYVFTHDSIG  465 (663)
T ss_pred             CCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecceeh-hhHhhhhHHHHHHH---------hcCCCeEEEEecCcee
Confidence             456 7999999999999999999999996 599999987 88999999999864         48999999985 564 


Q ss_pred             CCCCCCcchHHH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCc
Q 017513          155 AAGVGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK  231 (370)
Q Consensus       155 ~~~~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk  231 (370)
                      .|+||||| |+.  ++.+|.+||+.|+.|+|+.|+..+++.|++. ++|+++..+|.    +.|.   ++..+.......
T Consensus       466 vGEDGPTH-qPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQ----nlp~---l~~t~~~~~~kG  537 (663)
T COG0021         466 VGEDGPTH-QPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQ----NLPV---LERTDLEGVAKG  537 (663)
T ss_pred             cCCCCCCC-CcHHHHHHhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecC----CCCc---cCCCccccccCc
Confidence            57899999 544  6999999999999999999999999999995 89999986643    3222   222222222334


Q ss_pred             eEEeee----CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcC--CeEEEEecCCCCC
Q 017513          232 AKIERE----GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQH  303 (370)
Q Consensus       232 ~~vl~~----g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~--~~vvvvEe~~~~G  303 (370)
                      ++++++    +.|++||++||.|..|++|++.|+++|++++||+++|...|+.+.  .++++-..  .+.|.+|-... .
T Consensus       538 aYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~  616 (663)
T COG0021         538 AYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-L  616 (663)
T ss_pred             cEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-c
Confidence            677776    589999999999999999999999899999999999999998864  33443332  23588888764 5


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      ||...+            +..-..+|+. .|+.+  .+.|.+.+|+|+|.|+++++++++
T Consensus       617 ~W~ky~------------g~~g~~ig~~-~FG~Sap~~~l~~~fGft~e~vv~~~~~~l~  663 (663)
T COG0021         617 GWYKYV------------GLDGAVIGMD-SFGASAPGDELFKEFGFTVENVVAKAKSLLN  663 (663)
T ss_pred             chhhhc------------CCCCcEEeec-cCcCCCCHHHHHHHhCCCHHHHHHHHHHhhC
Confidence            665421            1123456664 56543  578888999999999999998873

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=100.00  E-value=2.5e-36  Score=263.29  Aligned_cols=153  Identities=29%  Similarity=0.462  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHH
Q 017513           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS  120 (370)
Q Consensus        41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~  120 (370)
                      ++++++|.+++++||+++++++|++.+++    +.+|.++| |+||+|+||+|++|+++|+|+|+.|++||+++| ++|+
T Consensus         1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~   74 (156)
T cd07033           1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL   74 (156)
T ss_pred             ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence            36899999999999999999999985433    67899999 999999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCC-CCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC
Q 017513          121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD  197 (370)
Q Consensus       121 ~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~-~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~  197 (370)
                      +|++|||++++|+        +++||+++++ +|..+ ++|+|| +++++++++++||++|++|+|++|++.+++++++.
T Consensus        75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~  146 (156)
T cd07033          75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY  146 (156)
T ss_pred             HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence            9999999999994        6799999986 45544 689998 56778999999999999999999999999999999


Q ss_pred             CCCEEEEecc
Q 017513          198 PDPVVFLENE  207 (370)
Q Consensus       198 ~~Pv~i~~~~  207 (370)
                      ++|+|+|++|
T Consensus       147 ~~P~~irl~~  156 (156)
T cd07033         147 DGPVYIRLPR  156 (156)
T ss_pred             CCCEEEEeeC
Confidence            9999999763

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=7.4e-35  Score=308.86  Aligned_cols=292  Identities=18%  Similarity=0.197  Sum_probs=236.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHHH
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG  100 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A  100 (370)
                      +.++|..|...++.+++++|++|+++|+|++.              .+|+|+.+.+|.++|++.|++|++|+|.+++|++
T Consensus       584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~  663 (929)
T TIGR00239       584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE  663 (929)
T ss_pred             CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence            34789999999999999999999999999985              5666799999999999999999999999999999


Q ss_pred             HHHhccCCeeE--EEcccchHHH---HHHHHHHHH-hhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHH--cc
Q 017513          101 VGAAYYGLKPV--VEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--AS  172 (370)
Q Consensus       101 ~GlA~~G~rp~--~~t~~~~f~~---ra~dqi~~~-~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~--~~  172 (370)
                      .|+|+.|.+|+  ++.++.+|+.   .++|||.+. .+++++|+      ++|++.+.|..++.+.+||+..+++|  .+
T Consensus       664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~lql~~  737 (929)
T TIGR00239       664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMS------GLVMLLPHGYEGQGPEHSSGRLERFLQLAA  737 (929)
T ss_pred             HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence            99999998875  9999999997   779999888 58887665      38888888866556677788889999  78


Q ss_pred             CCCcEEEeeCCHHHHHHHHH-HHHhC-CCCEEEEecccccCCCCC--CcccccCCCcccccCceE-----EeeeCCcEEE
Q 017513          173 VPGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFP--VSAEVLDSSFCLPIGKAK-----IEREGKDVTI  243 (370)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~-~a~~~-~~Pv~i~~~~~l~~~~~~--~~~~~~~~~~~~~~Gk~~-----vl~~g~dv~I  243 (370)
                      .|||+|+.|++|.|++.+|+ ++++. ++|+++++||.||+.+..  ...++++..|..+++...     +.+++.+.+|
T Consensus       738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv  817 (929)
T TIGR00239       738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV  817 (929)
T ss_pred             CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence            99999999999999999999 79997 899999999999975421  113455555666664321     2233455566


Q ss_pred             EEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCC
Q 017513          244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGY  320 (370)
Q Consensus       244 ia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~  320 (370)
                      +++| ++..++++ +.++++|++++|||+++|+|||.++|.++++|+.   ++|++.|...+.|-...|...|.+.... 
T Consensus       818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~~-  894 (929)
T TIGR00239       818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIPE-  894 (929)
T ss_pred             EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhcc-
Confidence            6666 66666666 6777789999999999999999999999999996   7899988888888888888877653210 


Q ss_pred             CCCCEEEEecCCCCCC
Q 017513          321 LDAPVERIAGADVPMP  336 (370)
Q Consensus       321 l~~~~~~ig~~d~~~~  336 (370)
                       ..++..+|-+....|
T Consensus       895 -~~~l~y~gR~~~asp  909 (929)
T TIGR00239       895 -GVSVRYAGRPASASP  909 (929)
T ss_pred             -CCceEEeCCCCCCCC
Confidence             135777776655444

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=7.6e-35  Score=310.07  Aligned_cols=292  Identities=20%  Similarity=0.185  Sum_probs=240.6

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHH
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGI   99 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~   99 (370)
                      .+.++|..|...++..++++|++|+++|+|++.              .+|.|+.+.+|.++|+++|++|++|+|.+++|+
T Consensus       581 ~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~  660 (924)
T PRK09404        581 EKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGF  660 (924)
T ss_pred             CCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHH
Confidence            345789999999999999999999999999974              678899999999999999999999999999999


Q ss_pred             HHHHhccCCee--EEEcccchHHH---HHHHHHHHHh-hhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccC
Q 017513          100 GVGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV  173 (370)
Q Consensus       100 A~GlA~~G~rp--~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~i  173 (370)
                      +.|+|+.|.+|  +++.++.+|+.   .++||+.+.. +++++++      ++|++.+.|..++.+.+||+..+++|...
T Consensus       661 ~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~  734 (924)
T PRK09404        661 EYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLC  734 (924)
T ss_pred             HHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhC
Confidence            99999999975  99999999987   6799999886 8877654      48888887855555566777889999665


Q ss_pred             --CCcEEEeeCCHHHHHHHHHHHH-hC-CCCEEEEecccccCCCCCC--cccccCCCcccccCceEEeeeCCcE--EEEE
Q 017513          174 --PGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAKIEREGKDV--TITA  245 (370)
Q Consensus       174 --P~~~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~l~~~~~~~--~~~~~~~~~~~~~Gk~~vl~~g~dv--~Iia  245 (370)
                        |||+|+.|++|.|++.+|+.++ +. ++|+++++||.||+.+...  ..+++...+..++++.. .+++.|+  +|||
T Consensus       735 ~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~  813 (924)
T PRK09404        735 AEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLC  813 (924)
T ss_pred             CCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEE
Confidence              7999999999999999999864 66 4999999999999753211  12333334555566544 5677889  7999


Q ss_pred             echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 017513          246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGYLD  322 (370)
Q Consensus       246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~  322 (370)
                      ||.+++.++++++.+..  .++.|||+++|+|||.++|.++++|++   ++|+|+|...+.|.+..|...+.....  ..
T Consensus       814 ~Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~  889 (924)
T PRK09404        814 SGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EG  889 (924)
T ss_pred             cCHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cC
Confidence            99999999999986533  499999999999999999999999984   899999988999999999888865311  01


Q ss_pred             CCEEEEecCCCCCC
Q 017513          323 APVERIAGADVPMP  336 (370)
Q Consensus       323 ~~~~~ig~~d~~~~  336 (370)
                      .++..+|-+....|
T Consensus       890 ~~~~y~gR~~~asp  903 (924)
T PRK09404        890 QKLRYAGRPASASP  903 (924)
T ss_pred             CeeEEECCCCcCCC
Confidence            35777776655444

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=100.00  E-value=2.9e-34  Score=255.64  Aligned_cols=166  Identities=35%  Similarity=0.570  Sum_probs=134.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC--CeeEE
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV  112 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G--~rp~~  112 (370)
                      |++++|++++++|.+++++|++++++++|++  +|++..+.++...++|+||||+||+|++|+++|+|||++|  ++|++
T Consensus         1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~   78 (178)
T PF02779_consen    1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE   78 (178)
T ss_dssp             -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence            5789999999999999999999999999998  4555444555566667899999999999999999999999  67777


Q ss_pred             EcccchHHH----HHHHHHHHHhhhccccCCCCcccCEEEEeCCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHH
Q 017513          113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED  186 (370)
Q Consensus       113 ~t~~~~f~~----ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e  186 (370)
                      .+|+ .|+.    |+++|+++++++        .++||.++.++|. .+++|+|| +++++++|+++|||+|++|+|+.|
T Consensus        79 ~~f~-~F~~~~q~r~~~~~~~~~~~--------~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e  149 (178)
T PF02779_consen   79 STFA-DFLTPAQIRAFDQIRNDMAY--------GQLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE  149 (178)
T ss_dssp             EEEG-GGGGGGHHHHHHHHHHHHHH--------HTS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred             eecc-ccccccchhhhhhhhhhhhc--------ccceecceeecCcccccccccccccccccccccccccccccCCCHHH
Confidence            7765 5666    999999999886        4556553334444 45677776 788899999999999999999999


Q ss_pred             HHHHHHHHHh--CCCCEEEEecccccC
Q 017513          187 ARGLLKAAIR--DPDPVVFLENELLYG  211 (370)
Q Consensus       187 ~~~~l~~a~~--~~~Pv~i~~~~~l~~  211 (370)
                      ++.+++++++  +++|+|||++|.+++
T Consensus       150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~  176 (178)
T PF02779_consen  150 AKGLLRAAIRRESDGPVYIREPRGLYP  176 (178)
T ss_dssp             HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred             HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence            9999999999  689999999988765

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain

Probab=99.97  E-value=6.3e-30  Score=225.54  Aligned_cols=155  Identities=37%  Similarity=0.556  Sum_probs=129.9

Q ss_pred             cHHHHHHHHHHHHHhcCC-CeEEecCCCCCCCCccccchhHHHHhCCC-------cEeechhhHHHHHHHHHHHhccCCe
Q 017513           38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK  109 (370)
Q Consensus        38 ~~r~a~~~~L~~l~~~~~-~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-------r~~~~GIaE~~~v~~A~GlA~~G~r  109 (370)
                      +++++++++|.+++++|+ +++++++|++.+++.    . ..+.| |+       ||+|+||+|++|+++|+|+|++|++
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~   74 (168)
T smart00861        1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR   74 (168)
T ss_pred             CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence            478999999999999955 999999999854332    1 13445 55       5999999999999999999999999


Q ss_pred             eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCC-CCCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHH
Q 017513          110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA  187 (370)
Q Consensus       110 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G-~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~  187 (370)
                      ||++++++ |+.|++||+++++++        .++|+++....| ..+++|+|| +++++++++++||++|++|+|++|+
T Consensus        75 pi~~~~~~-f~~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~  145 (168)
T smart00861       75 PVVAIFFT-FFDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA  145 (168)
T ss_pred             cEEEeeHH-HHHHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence            99999985 555999999998872        368888888655 455678865 7788999999999999999999999


Q ss_pred             HHHHHHHHhC-CCCEEEEecc
Q 017513          188 RGLLKAAIRD-PDPVVFLENE  207 (370)
Q Consensus       188 ~~~l~~a~~~-~~Pv~i~~~~  207 (370)
                      +.++++++++ ++|+|||.++
T Consensus       146 ~~~l~~a~~~~~~p~~i~~~~  166 (168)
T smart00861      146 KGLLRAAIRRDDGPPVIRLER  166 (168)
T ss_pred             HHHHHHHHhCCCCCEEEEecC
Confidence            9999999986 6899998653

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=99.92  E-value=1.2e-22  Score=198.77  Aligned_cols=247  Identities=17%  Similarity=0.147  Sum_probs=175.4

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCC
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGA  160 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~  160 (370)
                      ...|++ .-+|.+++++|.|+|.+|.|.++.|.++ .+..+++.+....         +.++|++++.  ++|++.+.  
T Consensus        48 ~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~-Gl~lm~E~l~~a~---------~~e~P~v~v~v~R~~p~~g~--  114 (352)
T PRK07119         48 GGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSP-GISLKQEGISYLA---------GAELPCVIVNIMRGGPGLGN--  114 (352)
T ss_pred             CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcc-hHHHHHHHHHHHH---------HccCCEEEEEeccCCCCCCC--
Confidence            356788 8999999999999999999999999765 5556778775433         4789998886  56665543  


Q ss_pred             cc-hHHHHHHHcc-----CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CCCCc----------c
Q 017513          161 QH-SHCYAAWYAS-----VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SFPVS----------A  218 (370)
Q Consensus       161 tH-s~~~~a~~~~-----iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~~~~----------~  218 (370)
                      ++ .|.|.-+...     .-+|.|++|+|+||++++..+|++    .+.||+++.+..+-..  .+.+.          +
T Consensus       115 t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~  194 (352)
T PRK07119        115 IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKD  194 (352)
T ss_pred             CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCC
Confidence            44 4555322221     446999999999999999999986    4789999976432100  00000          0


Q ss_pred             -cccCCC--ccc-----------------c----c-------CceEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCc
Q 017513          219 -EVLDSS--FCL-----------------P----I-------GKAKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGIS  266 (370)
Q Consensus       219 -~~~~~~--~~~-----------------~----~-------Gk~~vl-~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~  266 (370)
                       .+++..  ...                 .    +       ...+.. .++.|++||+||+++..+++|++.|+++|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~  274 (352)
T PRK07119        195 WAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIK  274 (352)
T ss_pred             CccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCe
Confidence             000000  000                 0    0       000111 2468999999999999999999999999999


Q ss_pred             eeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhC
Q 017513          267 AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAV  346 (370)
Q Consensus       267 v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g  346 (370)
                      ++|++++++||||.+.|.++++++++|+|+|++.  |.|..+|...+..      ..++..++..+           ...
T Consensus       275 v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n~--g~l~~ei~~~~~~------~~~~~~i~k~~-----------G~~  335 (352)
T PRK07119        275 VGLFRPITLWPFPEKALEELADKGKGFLSVEMSM--GQMVEDVRLAVNG------KKPVEFYGRMG-----------GMV  335 (352)
T ss_pred             EEEEeeceecCCCHHHHHHHHhCCCEEEEEeCCc--cHHHHHHHHHhCC------CCceeEEeccC-----------CEe
Confidence            9999999999999999999999999999999983  7788877755532      12333444321           124


Q ss_pred             CCHHHHHHHHHHHHh
Q 017513          347 PQVEDIVRAAKRACY  361 (370)
Q Consensus       347 l~~~~I~~~i~~~l~  361 (370)
                      ++++.|.+.++++++
T Consensus       336 ~~~~~i~~~~~~~~~  350 (352)
T PRK07119        336 PTPEEILEKIKEILG  350 (352)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            789999999998874

>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2

Probab=99.91  E-value=2.9e-25  Score=186.18  Aligned_cols=123  Identities=42%  Similarity=0.622  Sum_probs=112.6

Q ss_pred             CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHH
Q 017513          230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI  309 (370)
Q Consensus       230 Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i  309 (370)
                      ||+.++++|.|++|||||++++.|++|++.|+++|++++|||++|++|||.+.|.++++++++++|+|||+..||+|+.|
T Consensus         1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i   80 (124)
T PF02780_consen    1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI   80 (124)
T ss_dssp             TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred             CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCEEEEecCCCCCCC-HHHHHHHhCCCHHHH
Q 017513          310 CASVIEESFGYLDAPVERIAGADVPMPY-AANLERMAVPQVEDI  352 (370)
Q Consensus       310 ~~~l~~~~~~~l~~~~~~ig~~d~~~~~-~~~l~~~~gl~~~~I  352 (370)
                      ++.+.++++..+..++.++|.+|.|.++ ..++.+.+|+|+++|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl~~e~I  124 (124)
T PF02780_consen   81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGLDAESI  124 (124)
T ss_dssp             HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTHSHHHH
T ss_pred             HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcCCCCcC
Confidence            9999997764344789999999999875 567788899999986

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=99.90  E-value=9.2e-22  Score=194.03  Aligned_cols=246  Identities=20%  Similarity=0.229  Sum_probs=173.1

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ  161 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t  161 (370)
                      ..|+++- +|.+++++|.|+|.+|.|.++.|.++.|+ .+.+++-...+         .++|+|++.  |.|++.|..+.
T Consensus        49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~-lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~p~~  117 (376)
T PRK08659         49 GVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFS-LMQENIGYAAM---------TETPCVIVNVQRGGPSTGQPTK  117 (376)
T ss_pred             CEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHH-HHHHHHHHHHH---------cCCCEEEEEeecCCCCCCCCCC
Confidence            4677777 99999999999999999999999886665 56788765543         689998887  56777666555


Q ss_pred             chHHHH--HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CC------CCc-------c
Q 017513          162 HSHCYA--AWYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SF------PVS-------A  218 (370)
Q Consensus       162 Hs~~~~--a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~------~~~-------~  218 (370)
                      ++|.|.  ..+..  .-++.|++|+|+||++++...|++    ++.||+++.+..+-..  .+      .+.       .
T Consensus       118 ~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~  197 (376)
T PRK08659        118 PAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPK  197 (376)
T ss_pred             cCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCC
Confidence            566664  22221  234789999999999999999986    4789999965321000  00      000       0


Q ss_pred             ---------c-----c-----cCCCcc--------------------c---------cc-------CceEEee-eCCcEE
Q 017513          219 ---------E-----V-----LDSSFC--------------------L---------PI-------GKAKIER-EGKDVT  242 (370)
Q Consensus       219 ---------~-----~-----~~~~~~--------------------~---------~~-------Gk~~vl~-~g~dv~  242 (370)
                               .     +     +.....                    .         .+       +..+... ++.|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~  277 (376)
T PRK08659        198 VPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVV  277 (376)
T ss_pred             CCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEE
Confidence                     0     0     000000                    0         00       0011112 578999


Q ss_pred             EEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 017513          243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLD  322 (370)
Q Consensus       243 Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~  322 (370)
                      ||+||+++..+++|++.|+++|++++++++++++|||.+.|.+.++++++|+|||+|  .|.+..++...+..      .
T Consensus       278 iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~------~  349 (376)
T PRK08659        278 VVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG------R  349 (376)
T ss_pred             EEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC------C
Confidence            999999999999999999999999999999999999999999999999999999999  46666666655532      1


Q ss_pred             CCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513          323 APVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA  359 (370)
Q Consensus       323 ~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~  359 (370)
                      .++..++..+           ...+++++|.+.++++
T Consensus       350 ~~~~~i~~~~-----------G~~~~~~ei~~~~~~~  375 (376)
T PRK08659        350 AKVEGINKIG-----------GELITPEEILEKIKEV  375 (376)
T ss_pred             CCeeEEeccC-----------CCcCCHHHHHHHHHhh
Confidence            1233333211           1237888888887764

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.90  E-value=4.2e-22  Score=207.90  Aligned_cols=249  Identities=17%  Similarity=0.227  Sum_probs=180.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcc-
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-  162 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tH-  162 (370)
                      +-++....+|.+++.+|+|+|.+|.|.+++|..+ .+..+.|++.. +++.     | .++|+|++..++++  .++++ 
T Consensus        46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~-Gl~~~~e~l~~-~~~~-----g-~~~~iV~~~~~~~g--p~~~~~  115 (595)
T TIGR03336        46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHV-GLNVAADPLMT-LAYT-----G-VKGGLVVVVADDPS--MHSSQN  115 (595)
T ss_pred             cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCC-chhhhHHHhhh-hhhh-----c-CcCceEEEEccCCC--Cccchh
Confidence            3567888899999999999999999999999764 55577888864 4432     2 48899988764422  12444 


Q ss_pred             hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CC-----CCcccc--cCCC---cc
Q 017513          163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SF-----PVSAEV--LDSS---FC  226 (370)
Q Consensus       163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~-----~~~~~~--~~~~---~~  226 (370)
                      .|.|. ++....++.|++|+|+||++++..+|++    ++.||+++.+..+-..  .+     +.....  +..+   +.
T Consensus       116 ~q~d~-~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~  194 (595)
T TIGR03336       116 EQDTR-HYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYV  194 (595)
T ss_pred             hHhHH-HHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcC
Confidence            45553 2333357889999999999999999986    5799999976432100  00     000000  0000   00


Q ss_pred             c-c--------------------cCc--e-EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH
Q 017513          227 L-P--------------------IGK--A-KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST  282 (370)
Q Consensus       227 ~-~--------------------~Gk--~-~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~  282 (370)
                      . +                    ...  + .+..+++|++||+||++++.+++|++.|   |++++|++++++||||++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~  271 (595)
T TIGR03336       195 MVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGL  271 (595)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHH
Confidence            0 0                    000  1 1223468999999999999999988765   9999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513          283 INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA  359 (370)
Q Consensus       283 i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~  359 (370)
                      |++.++++++|+|+|||.  +++++.+...+.+.     +.++.++|++|.|++      +..+||++.|.++++++
T Consensus       272 i~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~-----~~~v~~~G~~d~fi~------~~~~Ld~~~i~~~i~~~  335 (595)
T TIGR03336       272 VEEFLSGVEEVLVVEELE--PVVEEQVKALAGTA-----GLNIKVHGKEDGFLP------REGELNPDIVVNALAKF  335 (595)
T ss_pred             HHHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhc-----CCCeEEecccCCccC------cccCcCHHHHHHHHHHh
Confidence            999999999999999997  55666555555432     237899999999887      34689999999999886

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=99.90  E-value=7.3e-22  Score=194.29  Aligned_cols=243  Identities=16%  Similarity=0.131  Sum_probs=172.7

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH  162 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH  162 (370)
                      .|+.+ -+|.+++++|+|+|.+|.|.+++|.++.|+ .+.+++-...         +.++|+|++.  |+|+++|.....
T Consensus        49 ~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~-lm~E~~~~a~---------~~e~P~V~~~~~R~GpstG~p~~~  117 (375)
T PRK09627         49 TFIQM-EDEISGISVALGASMSGVKSMTASSGPGIS-LKAEQIGLGF---------IAEIPLVIVNVMRGGPSTGLPTRV  117 (375)
T ss_pred             EEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHH-HHhhHHHHHH---------hccCCEEEEEeccCCCcCCCCCcc
Confidence            34544 599999999999999999999999887766 4567776443         4799999986  568887765555


Q ss_pred             hHHHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CCC------C---------
Q 017513          163 SHCYAAWYA-----SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SFP------V---------  216 (370)
Q Consensus       163 s~~~~a~~~-----~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~~------~---------  216 (370)
                      .|.|....+     ..| +.|++|+|+||++++...|++    +..||+++.+..+-..  .+.      +         
T Consensus       118 ~q~D~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~  196 (375)
T PRK09627        118 AQGDVNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKE  196 (375)
T ss_pred             chHHHHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhcccccccccc
Confidence            666643333     344 569999999999999999986    5789999965321000  000      0         


Q ss_pred             -ccc---c----cCCCcc-----------c-----------------------------c-------cCceEEee-eCCc
Q 017513          217 -SAE---V----LDSSFC-----------L-----------------------------P-------IGKAKIER-EGKD  240 (370)
Q Consensus       217 -~~~---~----~~~~~~-----------~-----------------------------~-------~Gk~~vl~-~g~d  240 (370)
                       .++   .    .+++.+           +                             .       ....+... +++|
T Consensus       197 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd  276 (375)
T PRK09627        197 FDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAE  276 (375)
T ss_pred             ccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCC
Confidence             000   0    000000           0                             0       00011111 3588


Q ss_pred             EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCC
Q 017513          241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGY  320 (370)
Q Consensus       241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~  320 (370)
                      ++||+||+....+.+|++.|+++|++++++.+++++|||.+.|++.+++.++|+|+|++.  |.|..+|...+..     
T Consensus       277 ~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~-----  349 (375)
T PRK09627        277 ILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR-----  349 (375)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC-----
Confidence            999999999999999999999999999999999999999999999999999999999986  8888888777632     


Q ss_pred             CCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513          321 LDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA  359 (370)
Q Consensus       321 l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~  359 (370)
                        .++..++..+           ...+++++|.++++++
T Consensus       350 --~~~~~i~~~~-----------G~~~~~~~i~~~i~~~  375 (375)
T PRK09627        350 --DDFHFLGKAN-----------GRPISPSEIIAKVKEL  375 (375)
T ss_pred             --CCceEEeeeC-----------CCcCCHHHHHHHHHhC
Confidence              1222332211           1236888888888763

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=99.87  E-value=6.1e-20  Score=183.00  Aligned_cols=252  Identities=17%  Similarity=0.211  Sum_probs=174.6

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH  162 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH  162 (370)
                      .|+.+ -+|.+++++|.|+|.+|.|.+++|.++.+ ..+.|.|....         ..++|+|++.  ++|++ +.....
T Consensus        58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl-~lm~E~l~~aa---------~~~~P~V~~~~~R~~~~-~~~i~~  125 (407)
T PRK09622         58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGL-ALMVEVLYQAS---------GMRLPIVLNLVNRALAA-PLNVNG  125 (407)
T ss_pred             EEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchH-HHHhhHHHHHH---------HhhCCEEEEEeccccCC-CcCCCc
Confidence            36664 49999999999999999999999977555 45678876433         3789988887  44444 333333


Q ss_pred             hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C--CCCEEEEecccc--c-CCCC-------------------
Q 017513          163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELL--Y-GESF-------------------  214 (370)
Q Consensus       163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~i~~~~~l--~-~~~~-------------------  214 (370)
                      .|.|. +.....+|.+++|+|+||++++...|++    +  ..||+++.+..+  + .+.+                   
T Consensus       126 d~~D~-~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~  204 (407)
T PRK09622        126 DHSDM-YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKN  204 (407)
T ss_pred             hHHHH-HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccc
Confidence            45553 3334568999999999999999999986    3  689999865331  0 0000                   


Q ss_pred             -------CCc-ccccCCCccc----------------------c----cCc----eEEe-eeCCcEEEEEechhHHHHHH
Q 017513          215 -------PVS-AEVLDSSFCL----------------------P----IGK----AKIE-REGKDVTITAFSKIVGLSLK  255 (370)
Q Consensus       215 -------~~~-~~~~~~~~~~----------------------~----~Gk----~~vl-~~g~dv~Iia~G~~~~~al~  255 (370)
                             |.. +....+++.+                      .    .|.    .+.. .+++|++||++|+++..+++
T Consensus       205 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~e  284 (407)
T PRK09622        205 SMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIV  284 (407)
T ss_pred             cccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHH
Confidence                   000 0000000000                      0    111    1111 14689999999999999999


Q ss_pred             HHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCC-CCCE---EEEecC
Q 017513          256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYL-DAPV---ERIAGA  331 (370)
Q Consensus       256 Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l-~~~~---~~ig~~  331 (370)
                      |++.|+++|+++++|++++++|||.+.|.+.++++++|+|+|++...||+|+.+.+.+..-..... ..++   ..+|..
T Consensus       285 a~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g~g  364 (407)
T PRK09622        285 AAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYGLG  364 (407)
T ss_pred             HHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEECCC
Confidence            999999999999999999999999999999999999999999999999999877666543211000 1232   222220


Q ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          332 DVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       332 d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                                  ...+++++|.+.++++.+
T Consensus       365 ------------G~~~t~~~i~~~~~~l~~  382 (407)
T PRK09622        365 ------------GRDMTIAHLCEIFEELNE  382 (407)
T ss_pred             ------------CCCCCHHHHHHHHHHHHh
Confidence                        124788998888887764

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.86  E-value=2e-19  Score=177.75  Aligned_cols=209  Identities=14%  Similarity=0.182  Sum_probs=151.9

Q ss_pred             eechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcchH
Q 017513           87 LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHSH  164 (370)
Q Consensus        87 ~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs~  164 (370)
                      +-..-+|.+++++|.|+|.+|.|.+++|.++.| ..+.|++.. ++        +.++|+|++.  |+|+ ++......|
T Consensus        52 ~~~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~~-aa--------~~~lPiVi~~~~R~~p-~~~~~~~~q  120 (390)
T PRK08366         52 YVPVESEHSAMAACIGASAAGARAFTATSAQGL-ALMHEMLHW-AA--------GARLPIVMVDVNRAMA-PPWSVWDDQ  120 (390)
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCCeEeeeCcccH-HHHhhHHHH-HH--------hcCCCEEEEEeccCCC-CCCCCcchh
Confidence            334569999999999999999999999977555 467788764 33        3689999886  5566 343333356


Q ss_pred             HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-------------------CC---------
Q 017513          165 CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-------------------GE---------  212 (370)
Q Consensus       165 ~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-------------------~~---------  212 (370)
                      .|. ++....++.+++|+|+||++++...|++    ...||+++.+..+.                   +.         
T Consensus       121 ~D~-~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~  199 (390)
T PRK08366        121 TDS-LAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLAD  199 (390)
T ss_pred             hHH-HHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCC
Confidence            664 3334458999999999999999999986    57999999753110                   00         


Q ss_pred             -CCCCcccccC-CCc------c------------------c--ccCceE--Eee----eCCcEEEEEechhHHHHHHHHH
Q 017513          213 -SFPVSAEVLD-SSF------C------------------L--PIGKAK--IER----EGKDVTITAFSKIVGLSLKAAE  258 (370)
Q Consensus       213 -~~~~~~~~~~-~~~------~------------------~--~~Gk~~--vl~----~g~dv~Iia~G~~~~~al~Aa~  258 (370)
                       ..|.....+. .+.      .                  +  .+|+..  ...    +++|++||+||+....+++|++
T Consensus       200 ~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~  279 (390)
T PRK08366        200 FDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVD  279 (390)
T ss_pred             CCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHH
Confidence             0000000000 000      0                  0  022111  111    4689999999999999999999


Q ss_pred             HHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH
Q 017513          259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA  307 (370)
Q Consensus       259 ~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~  307 (370)
                      .|+++|++++++.+++++|||.+.|++.+++.++|+++|++...|.+|.
T Consensus       280 ~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~  328 (390)
T PRK08366        280 LLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGI  328 (390)
T ss_pred             HHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccH
Confidence            9999999999999999999999999999999999999999876576443

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.82  E-value=1.1e-17  Score=165.78  Aligned_cols=250  Identities=16%  Similarity=0.135  Sum_probs=171.1

Q ss_pred             eechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CCCCCCCCcchHH
Q 017513           87 LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHC  165 (370)
Q Consensus        87 ~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~~~~~G~tHs~~  165 (370)
                      |-..-+|.+++++|.|+|.+|.|.+++|.++ .+..+.|++.. ++        ..++|+|++... +.+.+.+.+..|.
T Consensus        53 ~v~~EsE~aA~~~~~GAs~aGaRa~TaTS~~-Gl~lm~E~l~~-aa--------g~~lP~V~vv~~R~~~~p~~i~~d~~  122 (394)
T PRK08367         53 FIKVESEHSAISACVGASAAGVRTFTATASQ-GLALMHEVLFI-AA--------GMRLPIVMAIGNRALSAPINIWNDWQ  122 (394)
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCCeEeeeccc-hHHHHhhHHHH-HH--------HccCCEEEEECCCCCCCCCCcCcchH
Confidence            3345699999999999999999999999775 45567788764 33        378999998731 2222334433555


Q ss_pred             HHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC------CCCEEEEeccccc---------CC-C----------------
Q 017513          166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD------PDPVVFLENELLY---------GE-S----------------  213 (370)
Q Consensus       166 ~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~------~~Pv~i~~~~~l~---------~~-~----------------  213 (370)
                      | .+....-+|.+++|+|.||++++...|++.      ..||+++.+..+.         ++ .                
T Consensus       123 D-~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~  201 (394)
T PRK08367        123 D-TISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYL  201 (394)
T ss_pred             H-HHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCccccccccc
Confidence            5 234445679999999999999999999862      3799998654200         00 0                


Q ss_pred             CCCccc----ccCC-Cc-------------------------ccccCc-eEEee----eCCcEEEEEechhHHHHHHHHH
Q 017513          214 FPVSAE----VLDS-SF-------------------------CLPIGK-AKIER----EGKDVTITAFSKIVGLSLKAAE  258 (370)
Q Consensus       214 ~~~~~~----~~~~-~~-------------------------~~~~Gk-~~vl~----~g~dv~Iia~G~~~~~al~Aa~  258 (370)
                      ++..+.    .... .+                         .-.+|+ ...+.    +++|++||++|+....+++|++
T Consensus       202 d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~  281 (394)
T PRK08367        202 DPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVD  281 (394)
T ss_pred             CCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHH
Confidence            000000    0000 00                         000231 11121    4789999999999999999999


Q ss_pred             HHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCC---CCChHHHHHHHHHhhccCCCCCCEE-EEecCCCC
Q 017513          259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFP---QHGVGAEICASVIEESFGYLDAPVE-RIAGADVP  334 (370)
Q Consensus       259 ~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~---~GGlg~~i~~~l~~~~~~~l~~~~~-~ig~~d~~  334 (370)
                      .|+++|++++++.+++++|||.+.|++.+++.++|+|+|.+..   .|.|..+|...|...+   ...++. .++..   
T Consensus       282 ~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~~gl---  355 (394)
T PRK08367        282 KLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFIIGL---  355 (394)
T ss_pred             HHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEEeCC---
Confidence            9999999999999999999999999999999999999999864   3567778887775322   112222 11110   


Q ss_pred             CCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          335 MPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       335 ~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      +        ...+++++|.+.+.++++
T Consensus       356 g--------g~~~~~~~~~~~~~~~~~  374 (394)
T PRK08367        356 G--------GRDVTFKQLDEALEIAEK  374 (394)
T ss_pred             C--------CCCCCHHHHHHHHHHHHH
Confidence            1        024788888888887665

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=99.81  E-value=3.8e-18  Score=176.73  Aligned_cols=219  Identities=20%  Similarity=0.290  Sum_probs=161.2

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ  161 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t  161 (370)
                      +-.+-..-+|.+++++|.|+|.+|.|.+++|.++.|+ .+.|.+.. ++        +.++|+|++.  +.|++.|..+.
T Consensus       237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~-lm~E~l~~-a~--------~~~~P~Vi~~~~R~gpstg~~t~  306 (562)
T TIGR03710       237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFA-LMTEALGL-AG--------MTETPLVIVDVQRGGPSTGLPTK  306 (562)
T ss_pred             CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChh-HhHHHHhH-HH--------hccCCEEEEEcccCCCCCCCCCC
Confidence            4567778899999999999999999999999876665 56687732 22        4789999987  56777766555


Q ss_pred             chHHHH--HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--C--------CC--------
Q 017513          162 HSHCYA--AWYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--S--------FP--------  215 (370)
Q Consensus       162 Hs~~~~--a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~--------~~--------  215 (370)
                      +.|.|.  +.+..  .-++.|++|+|+||++++..+|++    ...||+++.+..+...  .        .+        
T Consensus       307 ~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~  386 (562)
T TIGR03710       307 TEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVL  386 (562)
T ss_pred             ccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccc
Confidence            567764  22221  335899999999999999999986    5799999965321000  0        00        


Q ss_pred             ---------------Ccc-cccCC-Cccc------------------------------------ccCceEEe-eeCCcE
Q 017513          216 ---------------VSA-EVLDS-SFCL------------------------------------PIGKAKIE-REGKDV  241 (370)
Q Consensus       216 ---------------~~~-~~~~~-~~~~------------------------------------~~Gk~~vl-~~g~dv  241 (370)
                                     ..+ .++.. +..+                                    ..+..+.. .+++|+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~  466 (562)
T TIGR03710       387 EPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADV  466 (562)
T ss_pred             cCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCE
Confidence                           000 00000 0000                                    00001111 135789


Q ss_pred             EEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017513          242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV  313 (370)
Q Consensus       242 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l  313 (370)
                      +||+||++...+++|++.|+++|++++++++++++|||.+.|++.+++.++|+|+|++.. |.|..+|...+
T Consensus       467 ~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~-Gql~~~v~~~~  537 (562)
T TIGR03710       467 LVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNAT-GQLAKLLRAET  537 (562)
T ss_pred             EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChh-hhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999854 88888877666

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK05261 putative phosphoketolase; Provisional

Probab=99.81  E-value=1.9e-17  Score=173.91  Aligned_cols=303  Identities=12%  Similarity=0.058  Sum_probs=201.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhH-------------HHHhCCCcEeechhhHHHHHHHH
Q 017513           35 KQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGL-------------LEKYGPERVLDTPITEAGFTGIG  100 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~-------------~~~~~p~r~~~~GIaE~~~v~~A  100 (370)
                      ...++|. +++.|.++++.||+ ++++++|...|+......+..             .... -.|+++ |++|++|.|++
T Consensus       389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~  465 (785)
T PRK05261        389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWL  465 (785)
T ss_pred             ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHH
Confidence            4557888 99999999999999 899999987654432111100             1112 379999 99999999999


Q ss_pred             HHHhccCCeeEEEcccchHH---HHHHHHH----HHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH---HH-HHH
Q 017513          101 VGAAYYGLKPVVEFMTFNFS---MQAIDHI----INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH---CY-AAW  169 (370)
Q Consensus       101 ~GlA~~G~rp~~~t~~~~f~---~ra~dqi----~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~---~~-~a~  169 (370)
                      .|+++.|.+++++||. .|+   ..++.|+    |.. .-..|+.. ...++.++....=..+.+|.||+.   .+ .+-
T Consensus       466 ~Gy~LtG~~~~~~sYe-aF~~ivd~m~~q~~kw~r~~-~~~~wr~~-~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~  542 (785)
T PRK05261        466 EGYLLTGRHGFFSSYE-AFIHIVDSMFNQHAKWLKVA-REIPWRKP-IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVAN  542 (785)
T ss_pred             HHHHhcCCCcceecHH-HHHHHHHHHHHHHHHHHHHH-hhcccCCC-CcceeEEeecceeecCCCCCCCCCchHHHHHHh
Confidence            9999999999999998 566   7888888    543 22333211 122233332222235679999944   22 355


Q ss_pred             HccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCC---cccccCceEEee--e-----C
Q 017513          170 YASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIER--E-----G  238 (370)
Q Consensus       170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~--~-----g  238 (370)
                      +++ |++.|+.|+|++|+..+++.|++. +.|.+|..+|...+       .+...+   ..+..|.+ ++.  +     +
T Consensus       543 ~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp-------~~~~~~~a~~~~~kGay-i~~~a~~~~~~~  613 (785)
T PRK05261        543 KKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRP-------QWLSMDEARKHCTKGLG-IWDWASNDDGEE  613 (785)
T ss_pred             cCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCc-------ccCChHHHHHhccCceE-EEEeccCCCCCC
Confidence            566 999999999999999999999986 68999987754211       111111   12345543 343  1     3


Q ss_pred             CcEEEEEechhHHH-HHHHHHHHHhc--CCceeEEEecccc----------CCCHHHHHHHHhcCCeEEEEecCCCCCCh
Q 017513          239 KDVTITAFSKIVGL-SLKAAEILAKE--GISAEVINLRSIR----------PLDRSTINASVRKTNRLVTVEEGFPQHGV  305 (370)
Q Consensus       239 ~dv~Iia~G~~~~~-al~Aa~~L~~~--Gi~v~Vi~~~~l~----------P~d~~~i~~~~~~~~~vvvvEe~~~~GGl  305 (370)
                      .|++|+|+|+.+.. |++|++.|+++  |++++||++..+-          -++.+.+.++.-..+.||+. -|    |.
T Consensus       614 pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-~h----gy  688 (785)
T PRK05261        614 PDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-FH----GY  688 (785)
T ss_pred             CCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-eC----CC
Confidence            59999999999999 99999999999  9999999994321          13345676666665665543 23    34


Q ss_pred             HHHHHHHHHhhccCCCCCCEEEEecCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513          306 GAEICASVIEESFGYLDAPVERIAGADVPM-PYAANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       306 g~~i~~~l~~~~~~~l~~~~~~ig~~d~~~-~~~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      -+.|-..+..+.  + ...+.-.|-.+.-. ..+-.+.-..++|--+++..+.+-+
T Consensus       689 p~~i~~l~~~r~--~-~~~~~v~gy~e~g~tttp~dm~~~N~~~r~~l~~~a~~~~  741 (785)
T PRK05261        689 PWLIHRLTYRRT--N-HHNFHVRGYKEEGTTTTPFDMVVLNELDRFHLAIDAIDRV  741 (785)
T ss_pred             HHHHHHHhccCC--C-CCccEEEEEecCCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence            566666665542  0 12344445444322 2344566667788888887766643

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=99.61  E-value=3.7e-13  Score=132.41  Aligned_cols=212  Identities=19%  Similarity=0.240  Sum_probs=143.2

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ  161 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t  161 (370)
                      -.|+++ -+|.++++++.|++.+|.|.+++|.++.|+. +.+.+-. ++        +..+|+|+..  |+|++.++...
T Consensus        48 ~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~L-m~E~l~~-a~--------~~~~P~Vi~~~~R~~ps~g~p~~  116 (365)
T COG0674          48 GVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLL-MAEALGL-AA--------GTETPLVIVVAQRPLPSTGLPIK  116 (365)
T ss_pred             cEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHH-HHHHHHH-HH--------hccCCeEEEEeccCcCCCccccc
Confidence            344444 5999999999999999999999998877764 4455432 22        5899999987  56776665444


Q ss_pred             chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc----------------------cCCC--
Q 017513          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL----------------------YGES--  213 (370)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l----------------------~~~~--  213 (370)
                      -.|.|.-..+. .++.+++-+|.||+.++...|++    ...|++++.+..+                      |++.  
T Consensus       117 ~dq~D~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~  195 (365)
T COG0674         117 GDQSDLMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTA  195 (365)
T ss_pred             ccHHHHHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccc
Confidence            45666433333 38888888899999999888876    4789998854211                      1000  


Q ss_pred             C-CCcccccC----CC----------ccc----------------ccCc----eEEee-eCCcEEEEEechhHHHHHHHH
Q 017513          214 F-PVSAEVLD----SS----------FCL----------------PIGK----AKIER-EGKDVTITAFSKIVGLSLKAA  257 (370)
Q Consensus       214 ~-~~~~~~~~----~~----------~~~----------------~~Gk----~~vl~-~g~dv~Iia~G~~~~~al~Aa  257 (370)
                      . +-.+..++    .+          ..+                -.|.    ..+.. ++++++||+||+....+.+++
T Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~  275 (365)
T COG0674         196 LDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAV  275 (365)
T ss_pred             cCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHH
Confidence            0 00000000    00          000                0111    11111 578999999998888888777


Q ss_pred             HHH-HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH
Q 017513          258 EIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA  307 (370)
Q Consensus       258 ~~L-~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~  307 (370)
                      ..+ +++|++++++.+++++|||.+.|++.+++.+.+.|++-....|++++
T Consensus       276 ~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~  326 (365)
T COG0674         276 VDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAE  326 (365)
T ss_pred             HHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchh
Confidence            665 58899999999999999999999999998875555555444566443

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.60  E-value=4.3e-13  Score=141.53  Aligned_cols=308  Identities=16%  Similarity=0.209  Sum_probs=208.6

Q ss_pred             cccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCccccchhHHHH----------h--------------CCC
Q 017513           32 SAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEK----------Y--------------GPE   84 (370)
Q Consensus        32 ~~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~~~~~~~~~~~----------~--------------~p~   84 (370)
                      ++++.+|+..||.+.|..+++.   .++||-+.+|.+.+.|   + .+++++          |              ...
T Consensus       484 ~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfg---m-~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~G  559 (885)
T TIGR00759       484 SGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFG---M-EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDG  559 (885)
T ss_pred             CCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCC---h-HHhhcccCccCCCCccCCccchhhhhhcccCCCC
Confidence            3357899999999999998875   4569999999875433   2 333332          1              136


Q ss_pred             cEeechhhHHHHHHH--HHHHhcc--C--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           85 RVLDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        85 r~~~~GIaE~~~v~~--A~GlA~~--G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.++.||+|.++++.  |+|.|.+  |  +.||.-.|++|..+|..|.+ ..+|+        +...-.+++ ++|.++ 
T Consensus       560 q~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d--------~~argfl~g~taGrtTL  630 (885)
T TIGR00759       560 QILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAAD--------QRARGFLLGATAGRTTL  630 (885)
T ss_pred             cchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhh--------hcCCceEeccCCCcccC
Confidence            899999999999875  4555544  5  69999887765599999976 34554        344445554 567532 


Q ss_pred             -CCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC----CCCEEEEecccccCCCCCCcccccCC-Cccccc
Q 017513          157 -GVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYGESFPVSAEVLDS-SFCLPI  229 (370)
Q Consensus       157 -~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~  229 (370)
                       +-|-+|+. .-..+-..+||+.-|.|+-..|+..++++.++.    +..+|.+++  .+.++...+ ..++. ...+-.
T Consensus       631 ~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt--~~ne~~~qp-~~p~~~~egIlk  707 (885)
T TIGR00759       631 NGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVT--VMNENYVQP-PMPEGAEEGILK  707 (885)
T ss_pred             CCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEE--ecCCCCCCC-CCCcchHHhHHh
Confidence             34555621 112456779999999999999999999998863    567777765  233322111 11111 111222


Q ss_pred             CceEEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHH-------------------
Q 017513          230 GKAKIERE------GKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI-------------------  283 (370)
Q Consensus       230 Gk~~vl~~------g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i-------------------  283 (370)
                      |- +.+++      +.++.|+++|+.+.++++|++.|+++ |+.++|.++.|..-|..+..                   
T Consensus       708 G~-Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v  786 (885)
T TIGR00759       708 GL-YRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYV  786 (885)
T ss_pred             Cc-eecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHH
Confidence            32 33332      24799999999999999999999986 99999999999877776633                   


Q ss_pred             HHHHhc-CCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          284 NASVRK-TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       284 ~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      .+.+.. ...+|++-+..+      ...+.+..    .++.++..+|. |.|+.+  .+.|.++|++|++.|+.++.+.|
T Consensus       787 ~~~L~~~~gP~va~tDy~~------~~~~qir~----~vp~~~~~LGt-DgFGrSdtr~~lr~~fevDa~~IV~AAL~aL  855 (885)
T TIGR00759       787 AQVLNEADAPVIASTDYVR------AFAEQIRP----YVPRKYVTLGT-DGFGRSDTRENLRHFFEVDAKSVVLAALYAL  855 (885)
T ss_pred             HHHhccCCCCEEEEccchh------hhHHHHhh----hcCCCceEecC-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence            122222 236677666532      22333322    23557778875 677654  58899999999999999999999


Q ss_pred             hcccccc
Q 017513          361 YRSVPMA  367 (370)
Q Consensus       361 ~~~~~~~  367 (370)
                      .+..++.
T Consensus       856 ~~~g~~~  862 (885)
T TIGR00759       856 ADDGEID  862 (885)
T ss_pred             hhcCCCC
Confidence            7766654

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=99.58  E-value=6.1e-13  Score=147.43  Aligned_cols=219  Identities=16%  Similarity=0.181  Sum_probs=151.0

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH  162 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH  162 (370)
                      .|+++ -+|.++++++.|++.+|.|.++.|.++.|+ .+.+.+. .++        ..++|+|+..  ++|.+.+...+-
T Consensus        53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~-LM~e~l~-~~a--------g~~~P~Vi~va~R~~~~~~~~i~~  121 (1165)
T TIGR02176        53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLL-LMIPNMY-KIA--------GELLPCVFHVSARAIAAHALSIFG  121 (1165)
T ss_pred             eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHH-HHHHHHH-HHH--------hccCCEEEEEecCCCCCCCCccCC
Confidence            34544 499999999999999999999999876665 4466653 233        2579999887  455543322221


Q ss_pred             hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC---CCC--------------------
Q 017513          163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE---SFP--------------------  215 (370)
Q Consensus       163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~---~~~--------------------  215 (370)
                      .+.|.... .--|+.+++|+|.||+.++...|++    ...|++++.+-.....   ++.                    
T Consensus       122 dh~Dv~~~-R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~  200 (1165)
T TIGR02176       122 DHQDVMAA-RQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFR  200 (1165)
T ss_pred             CchHHHHh-hcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhccccc
Confidence            23332222 3457899999999999999988875    5789999865311000   000                    


Q ss_pred             ---Ccccc-------cCCC-c-------------------------ccccCc----eEEe-eeCCcEEEEEechhHHHHH
Q 017513          216 ---VSAEV-------LDSS-F-------------------------CLPIGK----AKIE-REGKDVTITAFSKIVGLSL  254 (370)
Q Consensus       216 ---~~~~~-------~~~~-~-------------------------~~~~Gk----~~vl-~~g~dv~Iia~G~~~~~al  254 (370)
                         +.++-       .+++ +                         .--.|+    .+.. .++++.+||++|+....+.
T Consensus       201 ~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~  280 (1165)
T TIGR02176       201 KRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIE  280 (1165)
T ss_pred             ccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHH
Confidence               00000       0000 0                         000121    1111 2468999999999999999


Q ss_pred             HHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hcCCeEEEEecCCCCC----ChHHHHHHHHHh
Q 017513          255 KAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEICASVIE  315 (370)
Q Consensus       255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~~~~vvvvEe~~~~G----Glg~~i~~~l~~  315 (370)
                      +|++.|+++|++|++|.++.++|||.+.|++.+ ++.++|+|+|.+...|    .|..+|...+..
T Consensus       281 eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~  346 (1165)
T TIGR02176       281 ETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE  346 (1165)
T ss_pred             HHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence            999999999999999999999999999999988 5778999999985433    477777777754

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=99.54  E-value=1.6e-12  Score=131.83  Aligned_cols=253  Identities=19%  Similarity=0.233  Sum_probs=173.5

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcch
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS  163 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs  163 (370)
                      +-||+++..|.-+..+|+|++..|.|.++..- ...+.++.|.+++ ++|..      .+-.++++..+.+  +...++.
T Consensus        58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~G------v~GGlviv~aDDp--g~~SSqn  127 (640)
T COG4231          58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYAG------VTGGLVIVVADDP--GMHSSQN  127 (640)
T ss_pred             cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhcC------ccccEEEEEccCC--Ccccccc
Confidence            78999999999999999999999999999876 5789999999875 55532      3334555542221  1112222


Q ss_pred             HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-CCC-CCCc----ccc-cCC-CcccccCc
Q 017513          164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-GES-FPVS----AEV-LDS-SFCLPIGK  231 (370)
Q Consensus       164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-~~~-~~~~----~~~-~~~-~~~~~~Gk  231 (370)
                      +.|..++...-.+-|+.|+|+||++++++++++    ...||++|.....- .+. +...    +.+ +.. .+.-..|+
T Consensus       128 eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r  207 (640)
T COG4231         128 EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGR  207 (640)
T ss_pred             hhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccc
Confidence            333346666666779999999999999999997    36899998643210 000 0000    000 000 00000010


Q ss_pred             -------------------------------eEEe--eeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC
Q 017513          232 -------------------------------AKIE--REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL  278 (370)
Q Consensus       232 -------------------------------~~vl--~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~  278 (370)
                                                     ...+  .+..++-||+.|..+..+.||.+.|   |++..++.+-+.+||
T Consensus       208 ~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Pl  284 (640)
T COG4231         208 YVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPL  284 (640)
T ss_pred             eeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCC
Confidence                                           0011  1237899999999999999988877   899999999999999


Q ss_pred             CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 017513          279 DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR  358 (370)
Q Consensus       279 d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~  358 (370)
                      |.+.+++.+++.++|+||||....  +-.++.+.+.+.+     .++.-.|..+.+.|-      .+-+|++.|..+|.+
T Consensus       285 p~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g-----~~v~v~GKd~gllP~------~GElt~~~i~~ai~~  351 (640)
T COG4231         285 PEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG-----LPVEVHGKDEGLLPM------EGELTPEKIANAIAK  351 (640)
T ss_pred             CHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC-----CceEeecccccccCc------ccccCHHHHHHHHHH
Confidence            999999999999999999998762  5667777776643     344444433333432      245799999999999


Q ss_pred             HHhc
Q 017513          359 ACYR  362 (370)
Q Consensus       359 ~l~~  362 (370)
                      ++..
T Consensus       352 ~l~~  355 (640)
T COG4231         352 FLGK  355 (640)
T ss_pred             HhCc
Confidence            8854

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=99.29  E-value=3.7e-10  Score=124.02  Aligned_cols=306  Identities=13%  Similarity=0.029  Sum_probs=183.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCC--e---EEecCCCCCCCCcc--ccchhHHHHhCC-----CcEeechhhHHHHHHHHHHH
Q 017513           36 QMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGAY--KISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGA  103 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~--i---vvi~~Dl~~~~g~~--~~~~~~~~~~~p-----~r~~~~GIaE~~~v~~A~Gl  103 (370)
                      -++-.+|+...+.+-.+.|..  +   -+++    .|.|+-  .+...|. ++..     +-+|+.|+.|.-+.+++.|.
T Consensus        19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vs----gYpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~NEkvA~e~a~Ga   93 (1159)
T PRK13030         19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVS----GYRGSPLGGVDQALW-KAKKLLDASDIRFLPGINEELAATAVLGT   93 (1159)
T ss_pred             eeeHHHHHHHHHHHhhhHHHhcCCCccceEE----EeCCCCHHHHHHHHH-HhhhhhcccceEEeecCCHHHHHHHHHHh
Confidence            455667887777765555443  2   2222    244441  1122232 2211     37999999999999999999


Q ss_pred             h---------ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHH-HHHHccC
Q 017513          104 A---------YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASV  173 (370)
Q Consensus       104 A---------~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~-~a~~~~i  173 (370)
                      +         ..|.+.+++.-. ..+.|+.|.+++. ++..    ..-+-.|+++..+.+.......-+++. .+....+
T Consensus        94 q~~~~~~~~~~~Gv~~l~~~K~-~GvnvaaD~l~~~-n~~G----~~~~GG~v~v~gDDpg~~SSq~eqdSr~~~~~a~i  167 (1159)
T PRK13030         94 QQVEADPERTVDGVFAMWYGKG-PGVDRAGDALKHG-NAYG----SSPHGGVLVVAGDDHGCVSSSMPHQSDFALIAWHM  167 (1159)
T ss_pred             ccccccCCccccceEEEEecCc-CCcccchhHHHHH-Hhhc----CCCCCcEEEEEecCCCCccCcCHHHHHHHHHHcCC
Confidence            9         667777988865 6789999999864 3321    111334444432211100011111332 2344445


Q ss_pred             CCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc---------ccCCCC--CCcccccC-C-----Ccc------
Q 017513          174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL---------LYGESF--PVSAEVLD-S-----SFC------  226 (370)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~---------l~~~~~--~~~~~~~~-~-----~~~------  226 (370)
                         .|+.|+|++|++++..++++    ...||.++....         +.+...  ...+.+.. .     .+.      
T Consensus       168 ---Pvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~  244 (1159)
T PRK13030        168 ---PVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLA  244 (1159)
T ss_pred             ---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHH
Confidence               59999999999999999986    478999985321         000000  00000000 0     000      


Q ss_pred             ------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCC-----ceeEEEeccccCCCHHHH
Q 017513          227 ------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGI-----SAEVINLRSIRPLDRSTI  283 (370)
Q Consensus       227 ------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi-----~v~Vi~~~~l~P~d~~~i  283 (370)
                                        .++.+..+-.++.++.||++|.....++||.+.|...+.     .++++.+-..+||+.+.+
T Consensus       245 ~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i  324 (1159)
T PRK13030        245 IEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRL  324 (1159)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHH
Confidence                              011111111224779999999999999999999854332     467888889999999999


Q ss_pred             HHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513          284 NASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR  362 (370)
Q Consensus       284 ~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~  362 (370)
                      .+.+++.++|+||||...  =+-.++.+.+.+...   ..++.-+|..|.-+.  ..+-....++++.|.+.+.+.+..
T Consensus       325 ~~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~~---~~~~~v~GK~~~~G~--pllp~~gEl~~~~v~~~l~~~l~~  396 (1159)
T PRK13030        325 REFADGLEEILVIEEKRP--VIEQQIKDYLYNRPG---GARPRVVGKHDEDGA--PLLSELGELRPSLIAPVLAARLAR  396 (1159)
T ss_pred             HHHHhcCCEEEEEeCCch--HHHHHHHHHHHhccc---cCCceeEEEECCCCC--cCCCCcCCcCHHHHHHHHHHHHhc
Confidence            999999999999999764  255677777765431   113344565542110  011122458999999999877653

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=99.28  E-value=5.9e-11  Score=102.36  Aligned_cols=117  Identities=29%  Similarity=0.320  Sum_probs=87.2

Q ss_pred             HhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCC-
Q 017513           80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-  157 (370)
Q Consensus        80 ~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~-  157 (370)
                      +. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++.++++++. +++        ..++||+++.. .+.... 
T Consensus        32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~--------~~~~Pvl~i~~~~~~~~~~  101 (154)
T cd06586          32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAA--------AEHLPVVFLIGARGISAQA  101 (154)
T ss_pred             cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHH--------hcCCCEEEEeCCCChhhhc
Confidence            44 7999999999999999999999998899888875567789999998 444        36799999974 343332 


Q ss_pred             CCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH---HHHhCCCCEEEEec
Q 017513          158 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK---AAIRDPDPVVFLEN  206 (370)
Q Consensus       158 ~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~---~a~~~~~Pv~i~~~  206 (370)
                      .+.+|..++.++++.+|++.+..|++.++...+.+   .+...++|++++.|
T Consensus       102 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip  153 (154)
T cd06586         102 KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP  153 (154)
T ss_pred             cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            33344445578999999998888777655544332   23334689999765

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=99.26  E-value=5.9e-10  Score=122.17  Aligned_cols=303  Identities=14%  Similarity=0.026  Sum_probs=185.9

Q ss_pred             cccHHHHHHHHHHHHHhcC--CCe---EEecCCCCCCCCcc--ccchhHHHHhC----CCcEeechhhHHHHHHHH----
Q 017513           36 QMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGAY--KISKGLLEKYG----PERVLDTPITEAGFTGIG----  100 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~--~~i---vvi~~Dl~~~~g~~--~~~~~~~~~~~----p~r~~~~GIaE~~~v~~A----  100 (370)
                      -++-.+|+...+.+-.+.|  -.+   -+++    .|.|+-  .+...|.+.-.    -+-+|+.|+.|.-+.+++    
T Consensus        27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vs----GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ  102 (1165)
T PRK09193         27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVS----GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQ  102 (1165)
T ss_pred             eeeHHHHHHHHHHHHhhHHHhcCCCccceEE----eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhc
Confidence            4556788888777655555  333   3443    244441  11222322110    137899999999999999    


Q ss_pred             -----HHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC-CcchHHH-HHHHccC
Q 017513          101 -----VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY-AAWYASV  173 (370)
Q Consensus       101 -----~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G-~tHs~~~-~a~~~~i  173 (370)
                           .|.+..|.+.+|+.-. ..+.|+.|.+++.. +..    ..-+-.|+++..+....... ..| ++. ......+
T Consensus       103 ~~~~~~~a~~~Gv~~l~y~K~-pGvn~aaD~l~~~n-~~G----~~~~GGvv~v~gDDpg~~SSq~eq-dSr~~~~~a~i  175 (1165)
T PRK09193        103 QVNLFPGAKYDGVFGMWYGKG-PGVDRSGDVFRHAN-AAG----TSPHGGVLALAGDDHAAKSSTLPH-QSEHAFKAAGM  175 (1165)
T ss_pred             ccccccceeeccceEEEecCc-CCccccHhHHHHHH-hhc----CCCCCcEEEEEecCCCCccccchh-hhHHHHHHcCC
Confidence                 7779999999999875 67899999998643 221    11133445443221111111 112 333 2344445


Q ss_pred             CCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc---------cC--CCCCCcccc--cCC----Ccc------
Q 017513          174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL---------YG--ESFPVSAEV--LDS----SFC------  226 (370)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l---------~~--~~~~~~~~~--~~~----~~~------  226 (370)
                         .|+.|+|++|++++..++++    ...||.++.....         ..  .......++  +..    .+.      
T Consensus       176 ---Pvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~  252 (1165)
T PRK09193        176 ---PVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQ  252 (1165)
T ss_pred             ---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHH
Confidence               59999999999999999986    4689999853210         00  000000000  000    000      


Q ss_pred             ------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--------eeEEEeccccCCCH
Q 017513          227 ------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS--------AEVINLRSIRPLDR  280 (370)
Q Consensus       227 ------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~--------v~Vi~~~~l~P~d~  280 (370)
                                        .++.+..+-.++.++.||++|.....+++|.+.|   |++        ++++.+-..+|||.
T Consensus       253 ~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~  329 (1165)
T PRK09193        253 EARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEP  329 (1165)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCH
Confidence                              0111111001246899999999999999998877   555        89999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513          281 STINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       281 ~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      +.+++.+++.+.|+||||-..  =+-.+|.+.+.+..   ...+...+|..|.-+.  ..+-....++++.|.+.+.+.+
T Consensus       330 ~~i~~Fa~g~~~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~~g~--~llp~~gEl~~~~va~~l~~~l  402 (1165)
T PRK09193        330 QGVRAFAEGLDEILVVEEKRQ--IIEYQLKEELYNWP---DDVRPRVIGKFDPQGN--WLLPAHGELSPAIIAKAIARRL  402 (1165)
T ss_pred             HHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCceeEeeeCCCCC--ccCCCcCCcCHHHHHHHHHHHh
Confidence            999999999999999999764  35666776666543   2222345666542210  0111224589999999988776


Q ss_pred             hc
Q 017513          361 YR  362 (370)
Q Consensus       361 ~~  362 (370)
                      .+
T Consensus       403 ~~  404 (1165)
T PRK09193        403 LK  404 (1165)
T ss_pred             hh
Confidence            53

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=99.22  E-value=4.1e-09  Score=107.67  Aligned_cols=302  Identities=17%  Similarity=0.189  Sum_probs=196.2

Q ss_pred             cccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCccccchhHHHH----------hC--------------CCcE
Q 017513           34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEK----------YG--------------PERV   86 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~~~~~~~~~~~----------~~--------------p~r~   86 (370)
                      ++.+|+..||...|.++++.   .++||=+.+|.+.+.|   + .+++.+          |-              ..+.
T Consensus       489 g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfg---m-eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQi  564 (887)
T COG2609         489 GEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFG---M-EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQI  564 (887)
T ss_pred             CccchhHHHHHHHHHHHHhccccCCccccccCchhhhcc---c-hhhhhhcccccCCCccCCccchhhhhhhhhCCCcch
Confidence            45789999999999999984   2468999999874322   1 233221          11              2678


Q ss_pred             eechhhHHHHHHH--HHHHhcc--C--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccC-EEEEeCCCCC--CC
Q 017513           87 LDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAA--AG  157 (370)
Q Consensus        87 ~~~GIaE~~~v~~--A~GlA~~--G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~G~~--~~  157 (370)
                      ++.||+|.++++.  |+|.|.+  |  +.||.-.|++|..+|..|.+ +.+|+        +..- -++.+..|.+  .|
T Consensus       565 LqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~d--------q~ARgFLlgaTagrtTLng  635 (887)
T COG2609         565 LQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGD--------QDARGFLLGATAGRTTLNG  635 (887)
T ss_pred             HHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHh--------hhhcceeEeecCCCceeCc
Confidence            8999999999875  5555554  4  68998777766599999965 45564        3333 3333343432  23


Q ss_pred             CCCcchHHHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhC-------CCCEEEEecccccCCCCCCcccccC-CCccc
Q 017513          158 VGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD-------PDPVVFLENELLYGESFPVSAEVLD-SSFCL  227 (370)
Q Consensus       158 ~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-------~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~  227 (370)
                      -|-+| ++-.  -+-..+||+.-+.|+-+.|+.-++++.++.       +.-.||+....-|..    + ..|. .+..+
T Consensus       636 EGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q----P-amp~gae~gI  709 (887)
T COG2609         636 EGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ----P-AMPEGAEEGI  709 (887)
T ss_pred             ccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC----C-CCCCcchhhh
Confidence            34555 2221  233569999999999999999999998872       223556543322221    1 1111 11122


Q ss_pred             ccCceEEee---e--CCcEEEEEechhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHH-------------------H
Q 017513          228 PIGKAKIER---E--GKDVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRS-------------------T  282 (370)
Q Consensus       228 ~~Gk~~vl~---~--g~dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~-------------------~  282 (370)
                      ..|- +.++   .  +.++.|+++|....+|++|++.|++ .|+.++|..+.|..-+..+                   .
T Consensus       710 ~kG~-Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~y  788 (887)
T COG2609         710 IKGI-YKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPY  788 (887)
T ss_pred             hhce-eEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchH
Confidence            2232 2232   1  4789999999999999999999987 5999999999987766554                   3


Q ss_pred             HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC--CHHHHHHHhCCCHHHHHHHHHHHH
Q 017513          283 INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP--YAANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       283 i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~--~~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      +.+.+.....+|.+-+-.+      ..++++..    ..+.....+| .|.|+.  +.+.|.++|.+|+..|+-++.+.|
T Consensus       789 v~~~L~~~~p~Va~tDy~~------~~a~qir~----~vp~~y~vLG-tdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~L  857 (887)
T COG2609         789 VAQVLNADGPVVAVTDYMK------LFAEQIRA----VVPQRYRVLG-TDGFGRSDSRENLRRFFEVDAYYVVVAALSAL  857 (887)
T ss_pred             HHHHhccCCCeEEechhhH------hHHHHHhc----ccCCeeEEec-cCCCCccCcHHHHHHHhccchHHHHHHHHHHH
Confidence            4444553456666666443      22334422    1233455565 467765  457899999999999999999998


Q ss_pred             hccccc
Q 017513          361 YRSVPM  366 (370)
Q Consensus       361 ~~~~~~  366 (370)
                      .+.-++
T Consensus       858 a~~g~i  863 (887)
T COG2609         858 AKRGEI  863 (887)
T ss_pred             hcCCCc
Confidence            654443

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=99.21  E-value=1.8e-09  Score=118.27  Aligned_cols=261  Identities=13%  Similarity=0.009  Sum_probs=164.3

Q ss_pred             CcEeechhhHHHH---------HHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC
Q 017513           84 ERVLDTPITEAGF---------TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA  154 (370)
Q Consensus        84 ~r~~~~GIaE~~~---------v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~  154 (370)
                      +=+|+.|+.|.-+         +.++.|.+..|.+.+++.-. ..+.|+.|.+++..+...     ..+-.|+++..+..
T Consensus        85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~-pGvn~aaD~l~h~n~~gt-----~~~GGvv~v~gDDp  158 (1186)
T PRK13029         85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKG-PGVDRSGDALRHANLAGT-----SPLGGVLVLAGDDH  158 (1186)
T ss_pred             ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCc-CCcccchhHHHHhhcccc-----CCCCcEEEEEecCC
Confidence            3689999999999         66777777889999999875 678999999986442111     12334454432221


Q ss_pred             CCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-----------CCCCCCcc
Q 017513          155 AAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSA  218 (370)
Q Consensus       155 ~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-----------~~~~~~~~  218 (370)
                      .......-+|+. ......+   .|+.|+|++|++++..++++    ...||.++.....-           +.......
T Consensus       159 g~~SSq~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~  235 (1186)
T PRK13029        159 GAKSSSVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD  235 (1186)
T ss_pred             CCccccCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc
Confidence            111111112333 2344445   49999999999999999986    46899998532110           00000000


Q ss_pred             cccC-C-----Ccc------------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--
Q 017513          219 EVLD-S-----SFC------------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS--  266 (370)
Q Consensus       219 ~~~~-~-----~~~------------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~--  266 (370)
                      ++.. +     .+.                        .++.+..+-.++.++.||++|..+..++||.+.|   |++  
T Consensus       236 ~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~  312 (1186)
T PRK13029        236 DFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDA  312 (1186)
T ss_pred             cccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChh
Confidence            0000 0     000                        0111111002247899999999999999998877   554  


Q ss_pred             ------eeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCC----CC-
Q 017513          267 ------AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV----PM-  335 (370)
Q Consensus       267 ------v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~----~~-  335 (370)
                            ++++.+-..+|||.+.+++.+++.+.|+||||-..  =+-.+|.+.+.+..   ...+...+|..|.    .. 
T Consensus       313 ~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~~~~~~~~  387 (1186)
T PRK13029        313 TCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA--VIEYQLKEELYNWR---EDVRPAIFGKFDHRDGAGGE  387 (1186)
T ss_pred             hccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCCeeEeccccccccccc
Confidence                  89999999999999999999999999999999764  35667777766543   1222344666540    00 


Q ss_pred             ---CCH-HHHHHHhCCCHHHHHHHHHHHHh
Q 017513          336 ---PYA-ANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       336 ---~~~-~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                         +.+ ..+-....+|++.|.+.+.+.+.
T Consensus       388 ~~~~~g~~llp~~gEL~p~~va~~l~~~l~  417 (1186)
T PRK13029        388 WSVPAGRWLLPAHAELSPALIAKAIARRLA  417 (1186)
T ss_pred             ccccccCCCCCcccCcCHHHHHHHHHHHHH
Confidence               000 11222345899999999987763

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.12  E-value=1.2e-08  Score=108.19  Aligned_cols=285  Identities=17%  Similarity=0.181  Sum_probs=192.9

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc----------------cchhHHHHhCCCcEeechhhHHHHH
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK----------------ISKGLLEKYGPERVLDTPITEAGFT   97 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~----------------~~~~~~~~~~p~r~~~~GIaE~~~v   97 (370)
                      ...++|.-+=--++-.|+.+...|-+.++|..  -|+|.                -+..|....++=-.+|..++|-+++
T Consensus       884 ~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsr--RGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~  961 (1228)
T PRK12270        884 EGGIDWAFGELLAFGSLLLEGTPVRLSGQDSR--RGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAM  961 (1228)
T ss_pred             cCCccHHHHHHHHHHHHHhcCceeeeeccccC--CcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhh
Confidence            45666765555566688888888999999975  24432                1233333322334689999999999


Q ss_pred             HHHHHHhcc--CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHH-
Q 017513           98 GIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWY-  170 (370)
Q Consensus        98 ~~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~-  170 (370)
                      |+-.|.|.+  ....+++.+|.+|.   |-.+|++..+ +-.+|    .++..||+..+.|.- |.|+-||. -.+.+| 
T Consensus       962 GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss-~e~KW----gQ~S~vvlLLPHGyE-GQGPdHSSaRiERfLq 1035 (1228)
T PRK12270        962 GFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISS-GEAKW----GQRSGVVLLLPHGYE-GQGPDHSSARIERFLQ 1035 (1228)
T ss_pred             ccceeeecCCCcceeeehhhhcccccchHHHHHHHHhh-hHhhh----ccccceEEEccCCcC-CCCCCcchHHHHHHHH
Confidence            999999999  46889999999996   6778887643 33333    378889999887764 35788854 345655 


Q ss_pred             -ccCCCcEEEeeCCHHHHHHHHHHH-HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceE-Eee-----e--CC
Q 017513          171 -ASVPGLKVLSPYSSEDARGLLKAA-IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IER-----E--GK  239 (370)
Q Consensus       171 -~~iP~~~V~~P~d~~e~~~~l~~a-~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~-vl~-----~--g~  239 (370)
                       +.-.||+|..|++|...+.+|++- +.. ..|.+++.||.+.|.+...+. +  ++  |.-|+.+ |+.     +  .-
T Consensus      1036 lcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~-v--ed--FT~g~F~pVi~D~~~~~~~~V 1110 (1228)
T PRK12270       1036 LCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSD-V--ED--FTEGKFRPVIDDPTVDDGAKV 1110 (1228)
T ss_pred             hhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCC-H--HH--hccCCceecCCCCCCCCccce
Confidence             567799999999999999999764 443 689999999988775422111 0  11  1122222 111     1  13


Q ss_pred             cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEe-cCCCCCChHHHHHHHHHh
Q 017513          240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVE-EGFPQHGVGAEICASVIE  315 (370)
Q Consensus       240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvE-e~~~~GGlg~~i~~~l~~  315 (370)
                      +-+|+|+|-.+....+..+.  ...-++.+|.+..|+|||.+.|.+.+.++.   .++.|. |.-..|-| ..++-.|.+
T Consensus      1111 ~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw-~f~~~~l~~ 1187 (1228)
T PRK12270       1111 RRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAW-PFMALNLPE 1187 (1228)
T ss_pred             eEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCc-hhhhhhhHh
Confidence            56789999999887655332  223479999999999999999999999874   345554 44444544 455555544


Q ss_pred             hccCCCCCCEEEEecCCCCCC
Q 017513          316 ESFGYLDAPVERIAGADVPMP  336 (370)
Q Consensus       316 ~~~~~l~~~~~~ig~~d~~~~  336 (370)
                      ..-  -..++++++-+....|
T Consensus      1188 ~l~--~~~~lr~VsRpasasP 1206 (1228)
T PRK12270       1188 LLP--DGRRLRRVSRPASASP 1206 (1228)
T ss_pred             hcc--CCCCceEecCCcccCC
Confidence            310  1457888887665444

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=98.83  E-value=1.8e-08  Score=93.28  Aligned_cols=112  Identities=21%  Similarity=0.200  Sum_probs=75.6

Q ss_pred             EeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcch
Q 017513           86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHS  163 (370)
Q Consensus        86 ~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs  163 (370)
                      .+-...+|.++++++.|+|++|.|.++.|.++. +..+.|.|.. ++        ..++|+|++.  ++|++.|...+..
T Consensus        38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~G-l~lm~e~l~~-a~--------~~~~P~V~~~~~R~g~~~g~~~~~~  107 (230)
T PF01855_consen   38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPG-LNLMAEPLYW-AA--------GTELPIVIVVVQRAGPSPGLSTQPE  107 (230)
T ss_dssp             EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCH-HHHHCCCHHH-HH--------HTT--EEEEEEEB---SSSB--SB-
T ss_pred             EEEEecchHHHHHHHHHHHhcCCceEEeecCCc-ccccHhHHHH-HH--------HcCCCEEEEEEECCCCCCCCcCcCC
Confidence            677888999999999999999999999997654 4566787754 33        3789998886  5665544333345


Q ss_pred             HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513          164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (370)
Q Consensus       164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~  208 (370)
                      |.|. ++...-++.|++|+|+||++++...|++    ...||+++.+..
T Consensus       108 q~D~-~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~  155 (230)
T PF01855_consen  108 QDDL-MAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF  155 (230)
T ss_dssp             SHHH-HHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred             hhHH-HHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence            6664 4444668999999999999999999986    479999987543

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=98.82  E-value=4.2e-08  Score=97.97  Aligned_cols=288  Identities=17%  Similarity=0.210  Sum_probs=189.9

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhH-HHH-----hC--------CCc---EeechhhHHHH
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGL-LEK-----YG--------PER---VLDTPITEAGF   96 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~-~~~-----~~--------p~r---~~~~GIaE~~~   96 (370)
                      +-+++|..|-+-++-.++.+..|+-+-++|++  .|+|.-.... ..+     |-        ...   +-|..++|.+.
T Consensus       561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVG--RGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv  638 (913)
T KOG0451|consen  561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVG--RGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV  638 (913)
T ss_pred             CCccchHHHHHHHHHHHHhccCceeeeccccC--cccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence            55778999999999999999999999999999  3655421100 000     00        122   34678999999


Q ss_pred             HHHHHHHhccC--CeeEEEcccchHHHHHHHHHHHH----hhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHH-HHH
Q 017513           97 TGIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINS----AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAW  169 (370)
Q Consensus        97 v~~A~GlA~~G--~rp~~~t~~~~f~~ra~dqi~~~----~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~-~a~  169 (370)
                      +|+-.|||...  ..++++.++.+|..-  -||+.|    .+-.+|+    ....+|+..+.|..| -|+.||.+- +.+
T Consensus       639 LGFEyGmsienP~~L~iWEAQFGDFfNG--AQIIiDTFi~sgE~KWl----~ssglvmLLPHGyDG-AgpeHSSCRiERF  711 (913)
T KOG0451|consen  639 LGFEYGMSIENPNNLIIWEAQFGDFFNG--AQIIIDTFIVSGETKWL----ESSGLVMLLPHGYDG-AGPEHSSCRIERF  711 (913)
T ss_pred             hhhhcccccCCcccceeehhhhcccccC--ceEEEeeeecccchhhh----hhCCeEEEccCCcCC-CCCccchhhHHHH
Confidence            99999999994  679999998888642  233322    2334443    344677777777653 367887665 455


Q ss_pred             Hc-----------cCCCcEEEeeCCHHHHHHHHHHHHh--CCCCEEEEecccccCCCCCCc--cc-ccCCCcccccCceE
Q 017513          170 YA-----------SVPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AE-VLDSSFCLPIGKAK  233 (370)
Q Consensus       170 ~~-----------~iP~~~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~l~~~~~~~~--~~-~~~~~~~~~~Gk~~  233 (370)
                      +.           .--||.|+.|.++.+++.+++.-+-  ...|.++..||.+.+-+-..+  .+ -|+..|.-.+|...
T Consensus       712 LQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~  791 (913)
T KOG0451|consen  712 LQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTI  791 (913)
T ss_pred             HHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCccccccccccc
Confidence            43           1237999999999999999986553  479999998887655210000  00 12222222344321


Q ss_pred             EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC----eEEEEecCCCCCChHHHH
Q 017513          234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEI  309 (370)
Q Consensus       234 vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~----~vvvvEe~~~~GGlg~~i  309 (370)
                      .--+.-+-+|+++|--.....++.+.+..+. .+.++.+.+|-|||.+.+.+.++|++    .|..=||+...|-| +.|
T Consensus       792 ~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW-sFV  869 (913)
T KOG0451|consen  792 AKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW-SFV  869 (913)
T ss_pred             cChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcc-eee
Confidence            1112346789999988887777777665443 48899999999999999999999886    45677777655544 444


Q ss_pred             HHHHHhhccCCCCCCEEEEecCCCCCC
Q 017513          310 CASVIEESFGYLDAPVERIAGADVPMP  336 (370)
Q Consensus       310 ~~~l~~~~~~~l~~~~~~ig~~d~~~~  336 (370)
                      .-... +.   ++.++..+|-+..+.+
T Consensus       870 rPRFE-n~---lg~~L~~~GRpelp~p  892 (913)
T KOG0451|consen  870 RPRFE-NL---LGQQLHYCGRPELPTP  892 (913)
T ss_pred             chHHH-HH---hhhhheecCCCCCCCc
Confidence            44432 21   3456666776666655

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.5e-07  Score=96.24  Aligned_cols=286  Identities=18%  Similarity=0.190  Sum_probs=190.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccc-----------------hhHHHHhCCCcEeechhhHHHHH
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS-----------------KGLLEKYGPERVLDTPITEAGFT   97 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~-----------------~~~~~~~~p~r~~~~GIaE~~~v   97 (370)
                      +.+.|.-+-+-++..|+++.-.|-+-|+|+.  -|+|.-.                 +.+.....|=-+-|..++|-+.+
T Consensus       647 ~~iDwal~EalAFgsLl~EG~hVRlSGQDVE--RGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVL  724 (1017)
T KOG0450|consen  647 EGVDWALAEALAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVL  724 (1017)
T ss_pred             cccchHHHHHHHHHHHHhcCceEEeeccccc--ccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhhee
Confidence            3455666666667788888999999999997  3555421                 12211111233568899999999


Q ss_pred             HHHHHHhcc--CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHHc
Q 017513           98 GIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWYA  171 (370)
Q Consensus        98 ~~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~~  171 (370)
                      |+-.|.|++  ....+++.+|.+|.   |..+||++ ..+-.+|    .....+|+..+.|.. |.|+.||.. .+.++.
T Consensus       725 GFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW----~rqsGlVllLPHGye-G~GPEHSSaR~ERfLQ  798 (1017)
T KOG0450|consen  725 GFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKW----VRQSGLVLLLPHGYE-GMGPEHSSARPERFLQ  798 (1017)
T ss_pred             cceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhh----hhhcCeEEEccCCcC-CCCcccccccHHHHHH
Confidence            999999999  57889999999996   67889986 3344444    356678888887764 568888542 244332


Q ss_pred             --------------------cCCCcEEEeeCCHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCCc--ccccCCCccc
Q 017513          172 --------------------SVPGLKVLSPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVS--AEVLDSSFCL  227 (370)
Q Consensus       172 --------------------~iP~~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~l~~~~~~~~--~~~~~~~~~~  227 (370)
                                          ..=||+|+.+++|...+.+++.-+..  ..|.+|+.||.|.+.+...+  .+. ++...|
T Consensus       799 m~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef-~~g~~f  877 (1017)
T KOG0450|consen  799 MSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEF-DEGTGF  877 (1017)
T ss_pred             hccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHh-ccCCCC
Confidence                                12379999999999999999988864  69999999998766432111  011 011111


Q ss_pred             -----ccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC--eEEEE-ecC
Q 017513          228 -----PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTV-EEG  299 (370)
Q Consensus       228 -----~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~--~vvvv-Ee~  299 (370)
                           +-|+...-.++-+-+|+++|..+....++.+....+ -++.+..+.+|.||+.+.+.+.++++.  .|+.+ |||
T Consensus       878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~  956 (1017)
T KOG0450|consen  878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH  956 (1017)
T ss_pred             ceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhh
Confidence                 123333223567889999999888777666655322 278899999999999999999999885  45555 556


Q ss_pred             CCCCChHHHHHHHHHhhccCCCCCCEEEEecCC
Q 017513          300 FPQHGVGAEICASVIEESFGYLDAPVERIAGAD  332 (370)
Q Consensus       300 ~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d  332 (370)
                      ...|.| +.+.-.+... .+.+..++...|-.+
T Consensus       957 ~NmG~w-~Yv~PRl~T~-l~~~~r~v~Y~GR~P  987 (1017)
T KOG0450|consen  957 KNMGAW-DYVEPRLRTA-LKRLARPVKYAGRLP  987 (1017)
T ss_pred             cccCch-hhcchHHHHH-HHhhCCcceecccCC
Confidence            554544 4444333221 112344666666444

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.1e-06  Score=90.54  Aligned_cols=261  Identities=16%  Similarity=0.183  Sum_probs=154.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhHHHHh------------CCCcEeechhhHHHHHHHHHH
Q 017513           36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEKY------------GPERVLDTPITEAGFTGIGVG  102 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~~~~~------------~p~r~~~~GIaE~~~v~~A~G  102 (370)
                      +.....++++-+.++++.|++ ..++++|-..+.+..++.......+            ...|+++ .++|+++.|.+.|
T Consensus       400 ~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwleg  478 (793)
T COG3957         400 TAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEG  478 (793)
T ss_pred             chhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHH
Confidence            344468899999999999998 9999999765544333322222211            1367777 8999999999999


Q ss_pred             HhccCCeeEEEcccchHHHHHHHHHHHHhhhc-------cccCCCCcccCEEEEeCCCC--CCCCCCcchH-HHHHHH-c
Q 017513          103 AAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS-------NYMSSGQISVPIVFRGPNGA--AAGVGAQHSH-CYAAWY-A  171 (370)
Q Consensus       103 lA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~-------~~~~~g~~~~pvv~~~~~G~--~~~~G~tHs~-~~~a~~-~  171 (370)
                      .++.|.+.++++|- .|+.- .|.+.++-+++       .|+.. ...++.++  .++.  .+.+|-||+. .++..+ .
T Consensus       479 y~LtGr~glf~sYE-aF~~i-v~sm~nQh~kwl~v~~e~~wr~~-~~Sln~l~--TS~vw~QdhNGfsHQdPgf~~~~~~  553 (793)
T COG3957         479 YLLTGRHGLFASYE-AFAHI-VDSMFNQHAKWLKVTREVEWRRP-IPSLNYLL--TSHVWRQDHNGFSHQDPGFIDHVAN  553 (793)
T ss_pred             HHhcCCccceeeHH-HHHHH-HHHHHhhhHHHHHHHHhcccCCC-CCccccee--ehhhhhcccCCCccCCchHHHHHHh
Confidence            99999999999987 45421 22222222221       11110 11222222  2332  3457889943 234333 3


Q ss_pred             cCC-CcEEEeeCCHHHHHHHHHHHHhCCCCEEE-EecccccCCCCCCcccccCCC---cccccC--ceEEee-e--CCcE
Q 017513          172 SVP-GLKVLSPYSSEDARGLLKAAIRDPDPVVF-LENELLYGESFPVSAEVLDSS---FCLPIG--KAKIER-E--GKDV  241 (370)
Q Consensus       172 ~iP-~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i-~~~~~l~~~~~~~~~~~~~~~---~~~~~G--k~~vl~-~--g~dv  241 (370)
                      ..+ .+.|+.|.|++-+..++.++++..+-+.+ ..+|...+       ...+-+   --..-|  -++... +  +.|+
T Consensus       554 k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~p-------q~~t~~qA~~~~~~G~~iwewas~d~gepdv  626 (793)
T COG3957         554 KKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRP-------QWLTMEQAEKHCTDGAGIWEWASGDDGEPDV  626 (793)
T ss_pred             hccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcc-------eeecHHHHHHHhhcCcEEEEeccCCCCCCCE
Confidence            333 57899999999999999999997543333 33332111       000000   001112  122221 1  3589


Q ss_pred             EEEEechh-HHHHHHHHHHHHhcC--CceeEEE---eccccCC-------CHHHHHHHHhcCCeEEEEecCCCCCChHHH
Q 017513          242 TITAFSKI-VGLSLKAAEILAKEG--ISAEVIN---LRSIRPL-------DRSTINASVRKTNRLVTVEEGFPQHGVGAE  308 (370)
Q Consensus       242 ~Iia~G~~-~~~al~Aa~~L~~~G--i~v~Vi~---~~~l~P~-------d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~  308 (370)
                      ++.+.|.+ +.++++|+..|++++  ++++||+   +..|.|-       +.+.+.+..-..++++..     +.|....
T Consensus       627 V~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~-----fHGy~~l  701 (793)
T COG3957         627 VMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFL-----FHGYPWL  701 (793)
T ss_pred             EEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceeee-----ecCcHHH
Confidence            99999954 578999999999998  7777555   4555443       234455544444555432     2454544


Q ss_pred             HHHHHH
Q 017513          309 ICASVI  314 (370)
Q Consensus       309 i~~~l~  314 (370)
                      |-..+.
T Consensus       702 i~~L~y  707 (793)
T COG3957         702 IHALTY  707 (793)
T ss_pred             hhhhhe
Confidence            444443

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=98.61  E-value=3.4e-07  Score=97.03  Aligned_cols=268  Identities=18%  Similarity=0.226  Sum_probs=175.1

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcccc----------------chhHHHHhCCCcEeechhhHHHHH
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFT   97 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~----------------~~~~~~~~~p~r~~~~GIaE~~~v   97 (370)
                      .....|..|-.-+...++.....+.+-++|.+  .|+|.-                +..+....+.=..+|.+.+|.+++
T Consensus       563 ~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~--RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvl  640 (906)
T COG0567         563 GQGIDWGMAETLAFATLLDEGHPIRLSGQDSG--RGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVL  640 (906)
T ss_pred             ccccchhHHHHhcccceeccCCccccccccCC--CcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHH
Confidence            44566766666666778888889999999987  344431                222222222335689999999999


Q ss_pred             HHHHHHhccC--CeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHHc
Q 017513           98 GIGVGAAYYG--LKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA  171 (370)
Q Consensus        98 ~~A~GlA~~G--~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~~  171 (370)
                      ++=.|-|..-  ...+++-++++|.   |..+||...+ +-..|    .....+|+..+.|.- |.|+.||. -.+.++.
T Consensus       641 gFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisS-ge~KW----~r~sgLv~lLPHgyE-GQGPEHSSaRlER~LQ  714 (906)
T COG0567         641 GFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISS-GEQKW----GRMSGLVMLLPHGYE-GQGPEHSSARLERFLQ  714 (906)
T ss_pred             hhhhhhhhcCCchhhhhhhhhcccccCCeeeecccccc-HHHHH----HHhcCceEEccCCCC-CCCCcCccchhHHHHH
Confidence            9999999984  4667788888886   5778887532 22332    245667777776654 45889955 4466664


Q ss_pred             --cCCCcEEEeeCCHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCCcc--cccCCCcccccCceEEeeeCCcEEEEE
Q 017513          172 --SVPGLKVLSPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDVTITA  245 (370)
Q Consensus       172 --~iP~~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~vl~~g~dv~Iia  245 (370)
                        .--||+|..|+++.+.+.+++.-+..  ..|.+++.||.+.+.+...+.  ++....+...++........-+.+++|
T Consensus       715 LcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlc  794 (906)
T COG0567         715 LCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLC  794 (906)
T ss_pred             hhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEee
Confidence              34599999999999999999765543  689999999887765321111  111111111111111111224567889


Q ss_pred             echhHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCC---eEEEE-ecCCCCCChHHHHHHHH
Q 017513          246 FSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTN---RLVTV-EEGFPQHGVGAEICASV  313 (370)
Q Consensus       246 ~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvv-Ee~~~~GGlg~~i~~~l  313 (370)
                      +|-+.....+..   ++.| .++.++.+.+|.||+.+.+.+.++++-   .++.+ ||....|.|. .+...+
T Consensus       795 SGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~-~~~~~l  863 (906)
T COG0567         795 SGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY-YIQPHL  863 (906)
T ss_pred             ccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH-HHHHHH
Confidence            998888766544   3444 378899999999999999999998773   34444 4444445554 344444

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=97.70  E-value=0.0032  Score=54.60  Aligned_cols=110  Identities=19%  Similarity=0.207  Sum_probs=76.2

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC---
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG---  159 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G---  159 (370)
                      .-|++.+- .|++++.+|.|.++.|.+..+.+..|. +..+.+.+.+...         .+.|++++...-.....+   
T Consensus        41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG-~~n~~~~l~~a~~---------~~~P~v~i~g~~~~~~~~~~~  109 (160)
T cd07034          41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPG-LNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPK  109 (160)
T ss_pred             CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcch-HHHHHHHHHHHHh---------CCCCEEEEEeeCCCCCCCCCC
Confidence            46788888 999999999999999988767776654 4557787765332         468999886321211112   


Q ss_pred             CcchHHHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017513          160 AQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE  205 (370)
Q Consensus       160 ~tHs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~  205 (370)
                      ..|+..+. .+++.  -..++.+.+++|+..+++.|++    .++||+++.
T Consensus       110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         110 PDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             cCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            22322332 34433  5678889999999999998886    258999974

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=97.45  E-value=0.0056  Score=53.73  Aligned_cols=152  Identities=11%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhcCC-CeEEecCCCCCCCCccccchhHHHHh-------------CCCcEeechhhHHHHHHHHHHHhcc
Q 017513           41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKY-------------GPERVLDTPITEAGFTGIGVGAAYY  106 (370)
Q Consensus        41 ~a~~~~L~~l~~~~~-~ivvi~~Dl~~~~g~~~~~~~~~~~~-------------~p~r~~~~GIaE~~~v~~A~GlA~~  106 (370)
                      .++++-|.++++.|+ +.-++++|-..|.....+.+...+.+             .+++-+..-++|+...|...|..+.
T Consensus         2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt   81 (179)
T PF03894_consen    2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT   81 (179)
T ss_dssp             HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence            467888888888777 68999999765544322221111111             1346666779999999999999999


Q ss_pred             CCeeEEEcccchH--HHHHHHHHHHHh---hhccccCCCCcccCE-EEEeCCC--CCCCCCCcchHHH-H-HHHccCC-C
Q 017513          107 GLKPVVEFMTFNF--SMQAIDHIINSA---AKSNYMSSGQISVPI-VFRGPNG--AAAGVGAQHSHCY-A-AWYASVP-G  175 (370)
Q Consensus       107 G~rp~~~t~~~~f--~~ra~dqi~~~~---a~~~~~~~g~~~~pv-v~~~~~G--~~~~~G~tHs~~~-~-a~~~~iP-~  175 (370)
                      |..-++.+|-+|.  +.-++.|-...+   ....|+    .++|- -++..+.  ....+|-||+.+- + .++...| -
T Consensus        82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR----~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~  157 (179)
T PF03894_consen   82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWR----APIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDV  157 (179)
T ss_dssp             T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-
T ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCC----CCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCccc
Confidence            9999999988555  233444432211   222332    33332 2222222  2345899994432 3 4554444 5


Q ss_pred             cEEEeeCCHHHHHHHHHHHHh
Q 017513          176 LKVLSPYSSEDARGLLKAAIR  196 (370)
Q Consensus       176 ~~V~~P~d~~e~~~~l~~a~~  196 (370)
                      +.||.|.|++-+..++..+++
T Consensus       158 ~RvylPpDANtlLav~~~clr  178 (179)
T PF03894_consen  158 VRVYLPPDANTLLAVMDHCLR  178 (179)
T ss_dssp             EEEEE-SSHHHHHHHHHHHHH
T ss_pred             ceeecCCcHhHHHHHHHHHhc
Confidence            799999999999999998875

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=97.13  E-value=0.0061  Score=52.47  Aligned_cols=112  Identities=20%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CCCCCCCCc
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ  161 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~~~~~G~t  161 (370)
                      -|++.+- .|.+++.+|.|.++.+. .+++.+.+......+++.+.+..         ..++|++++... +.....-.+
T Consensus        35 ~~~i~~~-~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~---------~~~~Pll~i~~~~~~~~~~~~~  104 (155)
T cd07035          35 IRYILVR-HEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAY---------LDSIPLLVITGQRPTAGEGRGA  104 (155)
T ss_pred             CEEEEeC-CHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHH---------hhCCCEEEEeCCCccccccCCc
Confidence            4556554 99999999999999955 44444443345556777776533         368999998632 221111112


Q ss_pred             chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEec
Q 017513          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLEN  206 (370)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~  206 (370)
                      |+..+ ..+++.+-.+ .+...+++|+...+..|++    . ++||+|..|
T Consensus       105 ~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip  154 (155)
T cd07035         105 FQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP  154 (155)
T ss_pred             ccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence            32233 4677777655 6777889999998888886    2 579999654

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.84  E-value=0.024  Score=49.85  Aligned_cols=126  Identities=19%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             cchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc-ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC
Q 017513           73 ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP  151 (370)
Q Consensus        73 ~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~  151 (370)
                      +.+.+.+.- -=|++. .-.|++++.+|.|.++.+.||-+.+ .+......+..-+.+  ++       ..+.||+++..
T Consensus        30 l~~al~~~~-~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~-------~~~~Pvl~i~g   98 (172)
T PF02776_consen   30 LLDALEKSP-GIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AY-------ADRIPVLVITG   98 (172)
T ss_dssp             HHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HH-------HTT-EEEEEEE
T ss_pred             HHHHhhhhc-ceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--cc-------cceeeEEEEec
Confidence            344444442 246777 4599999999999998855544443 332334455555543  22       26899988863


Q ss_pred             -CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513          152 -NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (370)
Q Consensus       152 -~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~  210 (370)
                       .+. ..+.+..| ..+..++++.+-.+ .+.+.+++++...++.|++     .++|++|..|..+.
T Consensus        99 ~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~  164 (172)
T PF02776_consen   99 QRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQ  164 (172)
T ss_dssp             ESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHH
T ss_pred             ccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHh
Confidence             222 22345556 33335788887654 6777777777777777664     47999998776543

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=96.51  E-value=0.025  Score=49.22  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcc--hHHH
Q 017513           90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQH--SHCY  166 (370)
Q Consensus        90 GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tH--s~~~  166 (370)
                      .-.|..++++|+|..+.|.+|.+.+..+... .+..-+....  .      ..++||+++.. -|..+..-+.|  ....
T Consensus        40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~--~------~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~  110 (157)
T TIGR03845        40 LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN--K------TYGIPLPILASWRGVYKEKIPAQIPMGRA  110 (157)
T ss_pred             cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH--H------cCCCCEEEEEeccCCCCCCCccccchhhh
Confidence            5588888899999999999999998876644 5666654322  1      25799998862 23221111111  1111


Q ss_pred             -HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513          167 -AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (370)
Q Consensus       167 -~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~  208 (370)
                       +..|..+ ++......+++|+ ..+..|++    .++|++|+.++.
T Consensus       111 ~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~  155 (157)
T TIGR03845       111 TPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK  155 (157)
T ss_pred             hHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence             2333322 2235555667777 77777664    469999986543

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=96.39  E-value=0.024  Score=56.03  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhh-hccccCCCCcccCEEEEeC-CCCCC-CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAA-KSNYMSSGQISVPIVFRGP-NGAAA-GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a-~~~~~~~g~~~~pvv~~~~-~G~~~-~~G  159 (370)
                      .|++-+- .|..++++|+|+.++ |.+|++..|.+. +..+...+. +++ ..      .-++|++++.. -|..+ .+-
T Consensus        27 ~~~i~~~-~E~~av~iaaG~~latG~~~~v~mQnSG-lGn~vN~l~-SL~~~~------~y~iP~l~~i~~RG~~g~~de   97 (361)
T TIGR03297        27 LRHVIAA-NEGAAVGLAAGAYLATGKRAAVYMQNSG-LGNAVNPLT-SLADTE------VYDIPLLLIVGWRGEPGVHDE   97 (361)
T ss_pred             ceEEecC-CchHHHHHHHHHHHhcCCccEEEEecCc-hhhhhhHHH-hhcccc------ccCcCeeEEEecCCCCCCCCC
Confidence            3565554 799999999999999 999999999854 445666553 231 01      24788877753 35444 466


Q ss_pred             Ccch--HHH-HHHHcc--CCCcEEEeeCCHHHHHHHHH----HHHhCCCCEEEEeccccc
Q 017513          160 AQHS--HCY-AAWYAS--VPGLKVLSPYSSEDARGLLK----AAIRDPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs--~~~-~a~~~~--iP~~~V~~P~d~~e~~~~l~----~a~~~~~Pv~i~~~~~l~  210 (370)
                      ++|.  ... ..+|..  ||... + |.+..|....+.    ++++.+.|+.++.++...
T Consensus        98 pqh~~~G~~t~~lL~~~~i~~~~-~-~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~  155 (361)
T TIGR03297        98 PQHVKQGRITLSLLDALEIPWEV-L-STDNDEALAQIERALAHALATSRPYALVVRKGTF  155 (361)
T ss_pred             chhhHHhHHHHHHHHHcCCCEEE-C-CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence            7772  222 467764  56332 2 455555555554    445568999998876543

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=96.26  E-value=0.47  Score=49.66  Aligned_cols=115  Identities=17%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~  160 (370)
                      |++.+- .|++++.+|.|.|+.--+| + +.|..| .+..++.-|.+.  +       ..++||+++......  .+.+.
T Consensus        48 ~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gi~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~  116 (557)
T PRK08199         48 RVIVCR-QEGGAAMMAEAYGKLTGRPGICFVTRGP-GATNASIGVHTA--F-------QDSTPMILFVGQVARDFREREA  116 (557)
T ss_pred             cEEEec-cHHHHHHHHHHHHHhcCCCEEEEeCCCc-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCc
Confidence            566654 8999999999999984443 3 334444 444556655432  2       378999988632221  12333


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccccC
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYG  211 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~  211 (370)
                      .|..+..++++.+-.+ .....+++++...++.|++    . ++||+|..|..+..
T Consensus       117 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~  171 (557)
T PRK08199        117 FQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLS  171 (557)
T ss_pred             ccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhh
Confidence            3432225788876655 3344788888888887775    2 58999988866543

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=95.82  E-value=0.17  Score=44.27  Aligned_cols=112  Identities=14%  Similarity=0.061  Sum_probs=71.6

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++. .-.|+++..+|-|.|+. |...+ +.+..| .+..++.-+.+..         ..++||+++.......  +.+.
T Consensus        40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~Gp-G~~n~~~~l~~A~---------~~~~Pvl~I~g~~~~~~~~~~~  108 (164)
T cd07039          40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGP-GAIHLLNGLYDAK---------RDRAPVLAIAGQVPTDELGTDY  108 (164)
T ss_pred             eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHHHH---------hcCCCEEEEecCCcccccCCCC
Confidence            4554 45999999999999999 43333 334344 4445666665433         3689999986322222  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~  208 (370)
                      .|..+...+++.+-.+ ...+.++.++...++.|++    .++||+|-.|..
T Consensus       109 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d  159 (164)
T cd07039         109 FQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD  159 (164)
T ss_pred             CcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence            3322225788887765 5666788888888887775    369999976543

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=95.72  E-value=0.21  Score=43.32  Aligned_cols=113  Identities=17%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             hCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCc-ccCEEEEe-CCCCCC--
Q 017513           81 YGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-SVPIVFRG-PNGAAA--  156 (370)
Q Consensus        81 ~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~-~~pvv~~~-~~G~~~--  156 (370)
                      ..|.+|+..| +=-..+..|.|++++-.+|+++... +.....--|-...++        .. ++|++++. ..+..+  
T Consensus        33 ~~~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i~G-DG~f~m~~~el~t~~--------~~~~~~i~~vV~nN~~~g~~  102 (157)
T cd02001          33 DRDGHFYMLG-SMGLAGSIGLGLALGLSRKVIVVDG-DGSLLMNPGVLLTAG--------EFTPLNLILVVLDNRAYGST  102 (157)
T ss_pred             cCCCCEEeec-chhhHHHHHHHHHhcCCCcEEEEEC-chHHHhcccHHHHHH--------HhcCCCEEEEEEeCcccccc
Confidence            3388998755 2223445788887764478877754 443211112222233        24 47887765 332211  


Q ss_pred             CCCCcch-HHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          157 GVGAQHS-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       157 ~~G~tHs-~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      +.-.++. ..+ ..+...+ |+.-....+++|+...++.+++.++|++|-
T Consensus       103 ~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~vi~  151 (157)
T cd02001         103 GGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLLATTGPTLLH  151 (157)
T ss_pred             CCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHHhCCCCEEEE
Confidence            1111221 222 3344442 555566789999999999999989999884

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=95.30  E-value=0.61  Score=49.20  Aligned_cols=115  Identities=11%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =|++.+- .|++++.+|.|.|+. |...++ .+..|.++ .++.-+.+.  +       ..++||+++...-...  +.+
T Consensus        44 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~~~gi~~A--~-------~~~~Pvl~I~g~~~~~~~~~~  112 (588)
T PRK07525         44 IRFIDVA-HEQNAGHMADGYTRVTGRMGMVIGQNGPGIT-NFVTAVATA--Y-------WAHTPVVLVTPQAGTKTIGQG  112 (588)
T ss_pred             CCEEEec-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHH-HHHHHHHHH--h-------hcCCCEEEEeCCCCcccCCCC
Confidence            4666665 999999999999988 644443 34445444 455555432  2       3789999986321111  222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~  210 (370)
                      ..+..+...+++.+-.+ .....+++++...++.|++    ..+||||-.|..+.
T Consensus       113 ~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~  166 (588)
T PRK07525        113 GFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF  166 (588)
T ss_pred             CCcccchhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence            22222225788876543 5556778877777777764    46899998876543

>PRK08322 acetolactate synthase; Reviewed

Probab=95.16  E-value=0.94  Score=47.22  Aligned_cols=115  Identities=14%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =|++.+- .|++++.||.|.|+. |...++. |..|. +..++.-+.+.  +       ..++||+++...-...  +.+
T Consensus        39 i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~~t~GpG-~~N~~~~i~~A--~-------~~~~Pll~i~g~~~~~~~~~~  107 (547)
T PRK08322         39 IKLILTR-HEQGAAFMAATYGRLTGKAGVCLSTLGPG-ATNLVTGVAYA--Q-------LGGMPMVAITGQKPIKRSKQG  107 (547)
T ss_pred             CcEEEec-cHHHHHHHHHHHHHhhCCCEEEEECCCcc-HhHHHHHHHHH--h-------hcCCCEEEEeccccccccCCC
Confidence            3666654 999999999999998 5433333 44444 44455655432  2       3789999885321211  122


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~  210 (370)
                      ..+..+..++++.+-.+ .....+++++..+++.|++.     ++||+|-.|..+.
T Consensus       108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~  162 (547)
T PRK08322        108 SFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA  162 (547)
T ss_pred             ccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence            22222225788887653 66777888888888887762     5899998876543

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=95.09  E-value=0.9  Score=47.33  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|+++..||-|.|+. |.. ..+.|..|..+ .++.-+.+  |+       ..++||+++.......  +.+.
T Consensus        38 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~l~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~~  106 (539)
T TIGR02418        38 ELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCS-NLVTGLAT--AN-------SEGDPVVAIGGQVKRADLLKLT  106 (539)
T ss_pred             CEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHh-HHHHHHHH--Hh-------hcCCCEEEEeCCCcccccccCc
Confidence            677776 999999999999987 533 33445555444 45565543  22       3689999985311111  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      +|.....++++.+-.+ .....++.++...++.|++    . ++||+|-.|...
T Consensus       107 ~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv  159 (539)
T TIGR02418       107 HQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV  159 (539)
T ss_pred             ccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence            3433336888887654 4445778888777777765    2 589999887654

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=95.05  E-value=0.48  Score=49.74  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             CCcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV  158 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~  158 (370)
                      +=+++.+ ..|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+.  +       ..++||+++...-...  +.
T Consensus        53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG-~~N~~~gl~~A--~-------~~~~Pvl~ItG~~~~~~~~~  121 (571)
T PRK07710         53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPG-ATNVVTGLADA--M-------IDSLPLVVFTGQVATSVIGS  121 (571)
T ss_pred             CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHH--h-------hcCCCEEEEeccCCccccCC
Confidence            4678876 8999999999999988 53333 3344554 44455655432  2       3689999885321211  22


Q ss_pred             CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccc
Q 017513          159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENEL  208 (370)
Q Consensus       159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~  208 (370)
                      +..|..+..++++.+-.+ .....+++++..+++.|++    . ++||+|-.|..
T Consensus       122 ~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D  175 (571)
T PRK07710        122 DAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD  175 (571)
T ss_pred             CCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence            333323335788887655 4455677777777777775    2 59999987754

>PRK12474 hypothetical protein; Provisional

Probab=95.02  E-value=3.7  Score=42.52  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=73.4

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.||-|.|+. |.-.+ +.|..|. ...++.-+.+..         ..++||+++.......  +.+.
T Consensus        45 ~~i~~r-hE~~A~~mAdgYaR~tg~~gv~~~t~GpG-~~N~~~gl~~A~---------~d~~Pvl~i~G~~~~~~~~~~~  113 (518)
T PRK12474         45 RPVLCL-FEGVVTGAADGYGRIAGKPAVTLLHLGPG-LANGLANLHNAR---------RAASPIVNIVGDHAVEHLQYDA  113 (518)
T ss_pred             eEEEec-chHHHHHHHHHHHHHhCCCEEEEEccchh-HhHhHHHHHHHh---------hcCCCEEEEeccCchhhcCCCC
Confidence            677765 999999999999988 54443 3454554 444555554332         3689999885322211  1122


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .+..+..++++.+-.+ .....++.++..+++.|++     .++||+|-.|..+
T Consensus       114 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv  166 (518)
T PRK12474        114 PLTSDIDGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV  166 (518)
T ss_pred             ccccCHHHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence            2222225788876544 4567889999998888885     2589999888664

>PRK07586 hypothetical protein; Validated

Probab=95.01  E-value=0.5  Score=48.91  Aligned_cols=202  Identities=17%  Similarity=0.029  Sum_probs=106.5

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeE-E-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPV-V-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~-~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+- .|++++.||.|.|+.--+|- + .|+.|. +..++.-+.+..         ..++||+++.......  +.+.
T Consensus        41 ~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~~~gl~~A~---------~~~~Pvl~i~G~~~~~~~~~~~  109 (514)
T PRK07586         41 RCVLGL-FEGVATGAADGYARMAGKPAATLLHLGPG-LANGLANLHNAR---------RARTPIVNIVGDHATYHRKYDA  109 (514)
T ss_pred             eEEEec-cHHHHHHHHHHHHHHHCCCEEEEecccHH-HHHHHHHHHHHH---------hcCCCEEEEecCCchhccCCCc
Confidence            666665 99999999999998844433 3 355554 445555554332         3789999885322221  1222


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccccCCCCCCcccccCCCcccccCc----
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK----  231 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk----  231 (370)
                      .+..+...+++.+-.+ .....+++++...++.|++    . ++||||-.|........+................    
T Consensus       110 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (514)
T PRK07586        110 PLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE  188 (514)
T ss_pred             ccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence            2222225788876433 5556777777777777765    2 5899998876543221100000000000000000    


Q ss_pred             --eEEee-eCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEE-------eccccC-----CCHHHHHHHHhcCCeEEE
Q 017513          232 --AKIER-EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN-------LRSIRP-----LDRSTINASVRKTNRLVT  295 (370)
Q Consensus       232 --~~vl~-~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~-------~~~l~P-----~d~~~i~~~~~~~~~vvv  295 (370)
                        .+.++ ..+=++|++.|.....+.++..+|.++ |+-+-.-.       -+.+-|     .-.+...+.+++.+.|+.
T Consensus       189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~  268 (514)
T PRK07586        189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL  268 (514)
T ss_pred             HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence              01122 234577777776655666666666544 66542211       111222     112233456777787777


Q ss_pred             Eec
Q 017513          296 VEE  298 (370)
Q Consensus       296 vEe  298 (370)
                      +--
T Consensus       269 vG~  271 (514)
T PRK07586        269 VGA  271 (514)
T ss_pred             ECC
Confidence            653

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=94.94  E-value=0.26  Score=43.12  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.||-|.|+.--+|-+  .+..| .+..+..-+.+..         ..+.||+++.......  +.+.
T Consensus        37 ~~v~~r-hE~~A~~mAdgyar~sg~~gv~~~t~Gp-G~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~  105 (162)
T cd07037          37 RLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGT-AVANLLPAVVEAY---------YSGVPLLVLTADRPPELRGTGA  105 (162)
T ss_pred             eEEecc-ChHHHHHHHHHHHHhhCCCEEEEECCch-HHHHHhHHHHHHH---------hcCCCEEEEECCCCHHhcCCCC
Confidence            566654 999999999999998444433  33344 4445666665433         2689999986332222  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHH------HHHHHHHHHh----C-CCCEEEEe
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSED------ARGLLKAAIR----D-PDPVVFLE  205 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e------~~~~l~~a~~----~-~~Pv~i~~  205 (370)
                      .|..+..++++.+-.+ .....++++      +..+++.|++    . ++||++-.
T Consensus       106 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i  160 (162)
T cd07037         106 NQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL  160 (162)
T ss_pred             CcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence            3322224777776543 333344444      5555555554    3 58999853

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>PRK07524 hypothetical protein; Provisional

Probab=94.90  E-value=1.1  Score=46.50  Aligned_cols=114  Identities=22%  Similarity=0.146  Sum_probs=73.9

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCee-EE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--C--C
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--V  158 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~--~  158 (370)
                      |++.+- .|++++.||-|.|+.--+| ++ .|..|.. ..++.-|.+.  +       ..++||+++...-...  +  .
T Consensus        41 ~~i~~~-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~-~n~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~  109 (535)
T PRK07524         41 RHVTPR-HEQGAGFMADGYARVSGKPGVCFIITGPGM-TNIATAMGQA--Y-------ADSIPMLVISSVNRRASLGKGR  109 (535)
T ss_pred             cEEEec-cHHHHHHHHHHHHHHhCCCeEEEECCCccH-HHHHHHHHHH--H-------hcCCCEEEEeCCCChhhcCCCC
Confidence            667665 9999999999999885443 33 3555544 4455655432  2       3789999885211111  1  1


Q ss_pred             CCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513          159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (370)
Q Consensus       159 G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~  210 (370)
                      +..|...| .++++.+-- ......+++++...++.|++     .++||+|-.|+.+.
T Consensus       110 ~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~  166 (535)
T PRK07524        110 GKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL  166 (535)
T ss_pred             ccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence            23452223 578888654 35667788888888888775     25899998886543

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.83  E-value=0.44  Score=50.10  Aligned_cols=114  Identities=15%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+- .|++++.||-|.|+. |...++ .+..|. +..++.-|.+..         ..++||+++.......  +.+
T Consensus        53 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~A~---------~~~~Pvl~I~G~~~~~~~~~~  121 (570)
T PRK06725         53 LKHILTR-HEQAAIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLADAY---------MDSIPLVVITGQVATPLIGKD  121 (570)
T ss_pred             CcEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHh---------hcCcCEEEEecCCCcccccCC
Confidence            4677765 999999999999987 543343 344554 445555554322         3689999885322221  222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      ..|..+...+++.+-.+ .....+++++..+++.|++.     ++|||+..|..+
T Consensus       122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv  175 (570)
T PRK06725        122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV  175 (570)
T ss_pred             CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence            33322224788887654 44557889999998888863     699999877654

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.69  E-value=0.75  Score=48.34  Aligned_cols=113  Identities=22%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEc-ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.||.|.|+. |...++.+ ..|. +..++.-+.+..         ..++||+++.......  +.+.
T Consensus        44 ~~i~~r-hE~~A~~mAdgYar~tg~~gv~~~t~GPG-~~n~l~gi~~A~---------~~~~Pvl~i~G~~~~~~~~~~~  112 (574)
T PRK07979         44 DHVLVR-HEQAAVHMADGLARATGEVGVVLVTSGPG-ATNAITGIATAY---------MDSIPLVVLSGQVATSLIGYDA  112 (574)
T ss_pred             eEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCcc-HhhhHHHHHHHh---------hcCCCEEEEECCCChhccCCCC
Confidence            666654 899999999999987 65555444 4444 444556554322         3689999986322222  2333


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+-.+ .....+++++...++.|++     .++||||..|...
T Consensus       113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv  165 (574)
T PRK07979        113 FQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI  165 (574)
T ss_pred             CceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence            4433335788886654 4455688898888888886     2599999877654

>PRK08617 acetolactate synthase; Reviewed

Probab=94.69  E-value=0.67  Score=48.43  Aligned_cols=155  Identities=12%  Similarity=0.029  Sum_probs=89.8

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCe-eE-
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLK-PV-  111 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~r-p~-  111 (370)
                      +++++..+++.+.|.+..   =+-|+.-+.-    ....+.+.+.+.  .=|++.+- .|++++.+|.|.|+..-+ .+ 
T Consensus         2 ~~~~~~~~~l~~~L~~~G---V~~vFg~pG~----~~~~l~~al~~~--~i~~i~~~-hE~~A~~~A~gyar~tg~~gv~   71 (552)
T PRK08617          2 DKKKYGADLVVDSLINQG---VKYVFGIPGA----KIDRVFDALEDS--GPELIVTR-HEQNAAFMAAAIGRLTGKPGVV   71 (552)
T ss_pred             CccccHHHHHHHHHHHcC---CCEEEeCCCc----cHHHHHHHHhhC--CCCEEEec-cHHHHHHHHHhHhhhcCCCEEE
Confidence            455566666666665432   2333333211    112233444322  24566665 999999999999999433 33 


Q ss_pred             EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARG  189 (370)
Q Consensus       112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (370)
                      +.|..|.++ .++.-+.+.  +       ..++||+++...-..  -+.+..|..+..++++.+-.+ .....++.++..
T Consensus        72 ~vt~GpG~~-N~l~gl~~A--~-------~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~  140 (552)
T PRK08617         72 LVTSGPGVS-NLATGLVTA--T-------AEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKY-SAEVQDPDNLSE  140 (552)
T ss_pred             EECCCCcHh-HhHHHHHHH--h-------hcCCCEEEEecCCcccccCCCCccccchhhhhhhhcce-EEEeCCHHHHHH
Confidence            345455544 455555432  2       368999988521111  122333322225788887654 555678888888


Q ss_pred             HHHHHHh----C-CCCEEEEecccc
Q 017513          190 LLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       190 ~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      .+..|++    . ++||+|-.|...
T Consensus       141 ~i~~A~~~a~~~~~GPV~l~iP~dv  165 (552)
T PRK08617        141 VLANAFRAAESGRPGAAFVSLPQDV  165 (552)
T ss_pred             HHHHHHHHHccCCCCcEEEeChhhh
Confidence            8888776    2 589999877553

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=94.47  E-value=1.4  Score=45.90  Aligned_cols=114  Identities=15%  Similarity=0.063  Sum_probs=71.6

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~t  161 (370)
                      ||+.+ -.|++++.+|.|.|+..-+|-++ +.+...+..++.-|.+..         ..++||+++.......  +.+..
T Consensus        50 ~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~---------~~~~Pvl~i~g~~~~~~~~~~~~  119 (530)
T PRK07092         50 RYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAF---------KNHTPLVITAGQQARSILPFEPF  119 (530)
T ss_pred             CEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHh---------hcCCCEEEEecCCcccccCccch
Confidence            67754 59999999999999984444443 222233445666655432         3789999875322221  22332


Q ss_pred             chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      |+..+ ..+++.+-.+... ..+++++...++.|++    . ++||+|-.|...
T Consensus       120 ~~~~d~~~l~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~  172 (530)
T PRK07092        120 LAAVQAAELPKPYVKWSIE-PARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD  172 (530)
T ss_pred             hcccCHHHhhcccccceee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence            21123 5788887766444 4778888888877775    2 489999877543

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=94.17  E-value=1.6  Score=46.32  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=72.0

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G  159 (370)
                      =||+.+ -.|++++.+|.|.|+. |...++. +..|. +..++.-+.+  |+       ..++||+++........  .+
T Consensus        61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG-~~n~l~gl~~--A~-------~d~~Pvl~i~G~~~~~~~~~~  129 (616)
T PRK07418         61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPG-ATNLVTGIAT--AQ-------MDSVPMVVITGQVPRPAIGTD  129 (616)
T ss_pred             ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCC
Confidence            378888 6999999999999988 5444433 33444 4445555543  22       37899998863222222  22


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .....+++++...++.|++    . ++||+|-.|..+
T Consensus       130 ~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv  183 (616)
T PRK07418        130 AFQETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV  183 (616)
T ss_pred             CcccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence            33322224677766433 3456788888888888776    3 499999887654

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=94.16  E-value=1  Score=39.24  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC-
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~-  160 (370)
                      ||+.+ -.|++++.||.|.++.-... ++.+..| .+..+..-+.+..         ..++||+++.......  +.+. 
T Consensus        37 ~~i~~-rhE~~A~~mA~gyar~t~~gv~~~t~Gp-G~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~  105 (162)
T cd07038          37 RWVGN-CNELNAGYAADGYARVKGLGALVTTYGV-GELSALNGIAGAY---------AEHVPVVHIVGAPSTKAQASGLL  105 (162)
T ss_pred             eEEee-CCHHHHHHHHHHHHHhhCCEEEEEcCCc-cHHHHHHHHHHHH---------HcCCCEEEEecCCCccccccccc
Confidence            45544 59999999999999995222 2333344 4455667665432         3689999986322211  1111 


Q ss_pred             cc------hHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEec
Q 017513          161 QH------SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN  206 (370)
Q Consensus       161 tH------s~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~  206 (370)
                      .|      .+++ .++++.+=.+ .....++++...+++.|++    .++||+|-.|
T Consensus       106 ~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP  161 (162)
T cd07038         106 LHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP  161 (162)
T ss_pred             eeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence            11      1123 5788876554 4445677888888877775    3589999654

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=94.11  E-value=1.1  Score=46.85  Aligned_cols=114  Identities=19%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeE--EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~--~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+. ...|++++.||.|.|+.--+|-  +.|..|.. ..++.-+.+  |+       ..++||+++...-...  +.+
T Consensus        52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~  120 (564)
T PRK08155         52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGA-TNLVTAIAD--AR-------LDSIPLVCITGQVPASMIGTD  120 (564)
T ss_pred             ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcH-HHHHHHHHH--HH-------hcCCCEEEEeccCCcccccCC
Confidence            36777 4599999999999999954553  33545544 445665554  22       3789999885221111  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      ..+..+..++++.+-.+. ....+++++..+++.|++    . ++||+|-.|..+
T Consensus       121 ~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv  174 (564)
T PRK08155        121 AFQEVDTYGISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV  174 (564)
T ss_pred             CccccchhhhhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence            333222257888776543 334578888888887776    2 599999877553

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=93.91  E-value=1.2  Score=42.68  Aligned_cols=142  Identities=16%  Similarity=0.097  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhH---HHHHHHHHHHhccC-CeeEEEc
Q 017513           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF  114 (370)
Q Consensus        39 ~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE---~~~v~~A~GlA~~G-~rp~~~t  114 (370)
                      .-.++.++|.++....++.+++ .|+|.+.           +. | +|++..---   -.++.+|.|++++. -+++++.
T Consensus        12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai   77 (287)
T TIGR02177        12 ILSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV   77 (287)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence            4567788887776555565544 4766321           11 4 566543221   34667888887774 4677766


Q ss_pred             ccchHHH--HHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC-c----c-------hHHHHHH
Q 017513          115 MTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA-Q----H-------SHCYAAW  169 (370)
Q Consensus       115 ~~~~f~~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~-t----H-------s~~~~a~  169 (370)
                      .. +...  -....+.+ ++        +.++|++++. ..   |..++       .|. +    +       .....++
T Consensus        78 ~G-DG~f~~mg~~eL~t-A~--------r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~  147 (287)
T TIGR02177        78 GG-DGDLYGIGGNHFVA-AG--------RRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI  147 (287)
T ss_pred             eC-chHHHhccHHHHHH-HH--------HhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence            44 4442  33344443 33        3578887765 22   22211       110 0    0       0011244


Q ss_pred             HccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .....-.-.....+++|+..+++.|+++++|++|-
T Consensus       148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe  182 (287)
T TIGR02177       148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD  182 (287)
T ss_pred             hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence            44443223333699999999999999999999884

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK08611 pyruvate oxidase; Provisional

Probab=93.78  E-value=1.9  Score=45.42  Aligned_cols=115  Identities=14%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+. ...|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+.  +       ..++||+++...-...  +.+
T Consensus        44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gla~A--~-------~~~~Pvl~ItG~~~~~~~~~~  112 (576)
T PRK08611         44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPG-AIHLLNGLYDA--K-------MDHVPVLALAGQVTSDLLGTD  112 (576)
T ss_pred             CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCc-HHHHHHHHHHH--h-------hcCCCEEEEecCCcccccCCC
Confidence            36666 55999999999999977 53333 3344544 44455655432  2       3789999986321211  233


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~  210 (370)
                      ..|..+...+++.+--+ .....+++++...+..|++    .++||+|-.|..+.
T Consensus       113 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~  166 (576)
T PRK08611        113 FFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLP  166 (576)
T ss_pred             CccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhh
Confidence            33422235788887554 4456677777777777664    46999998876543

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=93.73  E-value=1.2  Score=46.68  Aligned_cols=113  Identities=20%  Similarity=0.131  Sum_probs=71.7

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.+|.|.|+. |... ++.|..|. +..++.-+.+..         ..++||+++.......  +.+.
T Consensus        50 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~A~---------~~~~Pvl~i~G~~~~~~~~~~~  118 (566)
T PRK07282         50 RHILAR-HEQGALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIADAM---------SDSVPLLVFTGQVARAGIGKDA  118 (566)
T ss_pred             eEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHh---------hcCCCEEEEecccccccCCCCC
Confidence            777775 999999999999988 6444 34444544 445556554332         3689999986321111  2222


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+-.+. ....++.++..++..|++.     ++||||-.|...
T Consensus       119 ~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  171 (566)
T PRK07282        119 FQEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV  171 (566)
T ss_pred             ccccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence            23222247888766543 3446778888777777763     589999877653

>PLN02470 acetolactate synthase

Probab=93.59  E-value=1.5  Score=46.12  Aligned_cols=114  Identities=18%  Similarity=0.037  Sum_probs=73.5

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+ -.|++++.+|-|.|+. |...++ .|..| .+..++.-|.+..         ..++||+++.......  +.+
T Consensus        52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GP-G~~N~l~gia~A~---------~~~~Pvl~I~G~~~~~~~~~~  120 (585)
T PLN02470         52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGP-GATNLVTGLADAL---------LDSVPLVAITGQVPRRMIGTD  120 (585)
T ss_pred             ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHHHH---------hcCCcEEEEecCCChhhcCCC
Confidence            467777 6999999999999988 544443 44444 4455666655432         3789999985322222  222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .....+++++..+++.|++.     ++||+|-.|...
T Consensus       121 ~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv  174 (585)
T PLN02470        121 AFQETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI  174 (585)
T ss_pred             cCcccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence            33322224777776543 33456888899888888863     599999877543

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=93.48  E-value=1.6  Score=41.65  Aligned_cols=145  Identities=17%  Similarity=0.116  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccc
Q 017513           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF  117 (370)
Q Consensus        39 ~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~  117 (370)
                      .-.++.++|.++....++.+++ .|.|-+.  +  ...+.    .-..+....  -.++.+|.|++++. -+++++... 
T Consensus        18 il~al~~al~~l~~~~~~~ivv-sdiGc~~--~--~~~~~----~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~G-   85 (279)
T PRK11866         18 ILEALRKALAELGIPPENVVVV-SGIGCSS--N--LPEFL----NTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGG-   85 (279)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEE-ECCchhh--h--hhhhc----cCCCccccc--ccHHHHHHHHHHHCCCCcEEEEEC-
Confidence            4577777776665444555544 4665221  1  11121    111222222  45677888888773 466776655 


Q ss_pred             hH--HHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC----c-ch-----HHHHHHHc--c
Q 017513          118 NF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA----Q-HS-----HCYAAWYA--S  172 (370)
Q Consensus       118 ~f--~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~----t-Hs-----~~~~a~~~--~  172 (370)
                      +.  .+-.+..+.+ ++        ..++|++++. ..   |..++       .|.    + +.     .++..+..  .
T Consensus        86 DG~~f~ig~~eL~t-A~--------rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G  156 (279)
T PRK11866         86 DGDGYGIGLGHLPH-AA--------RRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAG  156 (279)
T ss_pred             ChHHHHccHHHHHH-HH--------HHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCC
Confidence            44  4556666654 33        2577777664 22   22221       010    0 00     02233333  4


Q ss_pred             CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .+.+....+.++.|+...++.|++.++|++|-
T Consensus       157 ~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~  188 (279)
T PRK11866        157 ATFVARGFSGDVKHLKEIIKEAIKHKGFSFID  188 (279)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            55566677799999999999999999999984

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.45  E-value=1.8  Score=45.48  Aligned_cols=114  Identities=19%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =|++.+ -.|++++.||.|.|+. |...++ .+..|.+ ..++.-+.+..         ..++||+++.......  +.+
T Consensus        43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~-~n~l~gia~A~---------~~~~Pvl~i~G~~~~~~~~~~  111 (572)
T PRK08979         43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGA-TNTITGIATAY---------MDSIPMVVLSGQVPSNLIGND  111 (572)
T ss_pred             CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchH-hHHHHHHHHHh---------hcCCCEEEEecCCCccccCCC
Confidence            367777 4999999999999988 644443 3445544 44555554332         3689999885321111  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .....+++++...++.|++     .++||||-.|...
T Consensus       112 ~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  165 (572)
T PRK08979        112 AFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC  165 (572)
T ss_pred             CCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence            33332335788887554 4445578888888888876     3589999877553

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]

Probab=93.42  E-value=0.17  Score=42.92  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             Eeechh-hHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEE--eCCCCCCCCCCcc
Q 017513           86 VLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFR--GPNGAAAGVGAQH  162 (370)
Q Consensus        86 ~~~~GI-aE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~--~~~G~~~~~G~tH  162 (370)
                      +.+++. .|...+|+|+|+.++|.+|..-+|.+.. ......+. ++-.       ..++|+.++  ++ |...++=+.+
T Consensus        43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGl-GNsiNal~-SL~~-------ty~iPl~ml~ShR-G~~~E~i~AQ  112 (172)
T COG4032          43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGL-GNSINALA-SLYV-------TYKIPLLMLASHR-GVLKEGIEAQ  112 (172)
T ss_pred             cccccccchhcceeeehhhhhcCCCcEEEEeccCc-chHHHHHH-HHHH-------Hhccchhhhhhcc-chhhcCCccc
Confidence            556554 6889999999999999999999987443 33333221 1111       135555544  44 3322211111


Q ss_pred             --hH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH----HhCCCCEEEEec
Q 017513          163 --SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFLEN  206 (370)
Q Consensus       163 --s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a----~~~~~Pv~i~~~  206 (370)
                        -+ ....+++.+ ++.-+.|..|+|+..++..+    ++...||.++.+
T Consensus       113 VpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls  162 (172)
T COG4032         113 VPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS  162 (172)
T ss_pred             cccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence              00 112455543 45678899999987777654    456899999765

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.39  E-value=1.7  Score=45.60  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=72.1

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+ -.|++++.||-|.|+. |...+ +.|..|.+ ..++.-+.+.  +       ..++||+++.......  +.+
T Consensus        43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~-~N~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~  111 (574)
T PRK06466         43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGA-TNAITGIATA--Y-------MDSIPMVVLSGQVPSTLIGED  111 (574)
T ss_pred             ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHHH--H-------hcCCCEEEEecCCCccccCCC
Confidence            356665 5999999999999987 43333 34444544 4455555432  2       3789999986321211  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      ..+..+..++++.+-.+ .....++.++..+++.|++.     ++|||+-.|...
T Consensus       112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv  165 (574)
T PRK06466        112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM  165 (574)
T ss_pred             cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence            33322225788887664 55566788888887777752     599999887653

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=93.38  E-value=2.7  Score=44.60  Aligned_cols=114  Identities=17%  Similarity=0.070  Sum_probs=73.6

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =+++.+ -.|++++.+|.|.|+. |...++ .+..|.+ ..++.-+.+.  +       ..++||+++.......  +.+
T Consensus        70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~l~gl~~A--~-------~~~~PllvI~G~~~~~~~~~~  138 (612)
T PRK07789         70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGA-TNLVTPIADA--N-------MDSVPVVAITGQVGRGLIGTD  138 (612)
T ss_pred             ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence            366666 5999999999999988 644443 4445544 4455655432  2       3689999986322221  222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .....+++++..+++.|++.     ++||+|-.|..+
T Consensus       139 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv  192 (612)
T PRK07789        139 AFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA  192 (612)
T ss_pred             cCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence            33322225788887654 44567888988888888862     589999877654

>PRK05858 hypothetical protein; Provisional

Probab=93.36  E-value=2.2  Score=44.54  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEE-E-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~-~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+- .|++++.||.|.|+...+|-+ . +..|.+ ..++.-|.+.  +       ..++||+++.......  +.|
T Consensus        43 i~~i~~r-hE~~A~~~AdGyar~tg~~gv~~~t~GpG~-~n~~~~i~~A--~-------~~~~Pvl~i~g~~~~~~~~~~  111 (542)
T PRK05858         43 IRLIDVR-HEQTAAFAAEAWAKLTRVPGVAVLTAGPGV-TNGMSAMAAA--Q-------FNQSPLVVLGGRAPALRWGMG  111 (542)
T ss_pred             CCEEeec-cHHHHHHHHHHHHHhcCCCeEEEEcCCchH-HHHHHHHHHH--H-------hcCCCEEEEeCCCCcccCCCC
Confidence            4777775 999999999999999444333 3 334444 4455555432  2       3689999885322222  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      ..|..+-.++++.+-.+ .....++.++...+..|++    . ++||+|-.|...
T Consensus       112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv  165 (542)
T PRK05858        112 SLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH  165 (542)
T ss_pred             CCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence            33322224788887654 5556778888888887775    2 589999877653

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=93.33  E-value=0.72  Score=40.32  Aligned_cols=111  Identities=21%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-  155 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-  155 (370)
                      |.+|+..|.  +=-..+++|.|++++. -+++++... +... .....+ ..++        ..++|++++. . .+.. 
T Consensus        38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~G-DG~f~~~~~el-~ta~--------~~~lpv~ivv~NN~~~~~  107 (172)
T cd02004          38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEG-DGAFGFSGMEL-ETAV--------RYNLPIVVVVGNNGGWYQ  107 (172)
T ss_pred             CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEc-chhhcCCHHHH-HHHH--------HcCCCEEEEEEECccccc
Confidence            889988652  2334667888888875 366766654 4432 223333 3344        4688977765 2 2221 


Q ss_pred             -CC--C---------CCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          156 -AG--V---------GAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       156 -~~--~---------G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                       ..  .         +..+.. ++..+.++. |+....-.+.+|+...++.+.+.++|++|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie  168 (172)
T cd02004         108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN  168 (172)
T ss_pred             chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence             10  0         001111 223344443 666777789999999999999888999883

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=93.23  E-value=2.1  Score=44.98  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.||.|.|+. |.-.++ .|..|.++ .++.-|.+.  +       ..++||+++...-...  +.|.
T Consensus        41 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-N~~~gla~A--~-------~~~~Pvl~I~g~~~~~~~~~~~  109 (579)
T TIGR03457        41 RFIPVV-HEQGAGHMADGFARVTGRMSMVIGQNGPGVT-NCVTAIAAA--Y-------WAHTPVVIVTPEAGTKTIGLGG  109 (579)
T ss_pred             eEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCchHH-HHHHHHHHH--h-------hcCCCEEEEeCCCccccCCCCC
Confidence            677765 999999999999977 544444 44555444 455555432  2       3689999985321111  2222


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~  210 (370)
                      .+..+..++++.+-.+ .....++.++...++.|++    ..+||||-.|..+.
T Consensus       110 ~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~  162 (579)
T TIGR03457       110 FQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF  162 (579)
T ss_pred             CcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence            2222225788876543 4455677887777777765    35899998876543

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.13  E-value=2.2  Score=44.65  Aligned_cols=113  Identities=19%  Similarity=0.087  Sum_probs=73.0

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+- .|++++.||.|.|+. |...+ +.|..|.++ .++.-+.+..         ..++||+++.......  +.+.
T Consensus        43 ~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~~~gla~A~---------~~~~Pvl~i~G~~~~~~~~~~~  111 (563)
T PRK08527         43 KHILTR-HEQAAVHAADGYARASGKVGVAIVTSGPGFT-NAVTGLATAY---------MDSIPLVLISGQVPNSLIGTDA  111 (563)
T ss_pred             eEEEec-cHHHHHHHHHHHHhhhCCCEEEEECCCCcHH-HHHHHHHHHh---------hcCCCEEEEecCCCccccCCCC
Confidence            566654 999999999999977 53333 445555544 4556555432         3789999885322211  2222


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+=.+ .....+++++..+++.|++.     ++||||-.|...
T Consensus       112 ~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv  164 (563)
T PRK08527        112 FQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV  164 (563)
T ss_pred             Ccccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence            3322224788876543 45568899999999988862     489999877543

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=93.00  E-value=2.1  Score=44.72  Aligned_cols=113  Identities=18%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+- .|++++.+|-|.|+. |.- .++.|+.|. +..++.-+.+..         ..++||+++...-...  +.+.
T Consensus        41 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~l~~i~~A~---------~~~~Pvl~i~g~~~~~~~~~~~  109 (558)
T TIGR00118        41 EHILVR-HEQGAAHAADGYARASGKVGVVLVTSGPG-ATNLVTGIATAY---------MDSIPMVVFTGQVPTSLIGSDA  109 (558)
T ss_pred             eEEEeC-cHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHH---------hcCCCEEEEecCCCccccCCCC
Confidence            777776 999999999999987 533 334444444 444566555432         3789999986322222  2222


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      .+..+..++++.+-.+ .....+++++..+++.|++.     ++||||-.|..+
T Consensus       110 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv  162 (558)
T TIGR00118       110 FQEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV  162 (558)
T ss_pred             CcccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence            2222224788876654 34446788888888888762     589999887654

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=92.98  E-value=0.95  Score=47.49  Aligned_cols=113  Identities=17%  Similarity=0.062  Sum_probs=71.8

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEE--cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~--t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+ ..|++++.+|.|.|+.--+|-++  |..|..+ .++.-|.+..         ..++||+++.......  +.+.
T Consensus        45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-N~l~gi~~A~---------~~~~Pvl~i~G~~~~~~~~~~~  113 (572)
T PRK06456         45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTT-NLVTGLITAY---------WDSSPVIAITGQVPRSVMGKMA  113 (572)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH-HHHHHHHHHH---------hhCCCEEEEecCCCccccCCCC
Confidence            46655 48999999999999884344333  5565544 4566655432         3689999985321111  2223


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+-.+ .....+++++...++.|++     .++||+|-.|...
T Consensus       114 ~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  166 (572)
T PRK06456        114 FQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI  166 (572)
T ss_pred             ccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence            3322225788887655 3444678888888887775     3599999887654

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=92.82  E-value=2.2  Score=37.68  Aligned_cols=112  Identities=19%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA  156 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~  156 (370)
                      |.||+..+-  +=-..+..|.|++++ .-++++++.. +... ... |-...+.        ..++|++++. . +|..-
T Consensus        38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~G-DG~f~m~~-~eL~ta~--------~~~l~vi~vV~NN~~~g~  107 (177)
T cd02010          38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSG-DGGFMMNS-QELETAV--------RLKIPLVVLIWNDNGYGL  107 (177)
T ss_pred             CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEc-chHHHhHH-HHHHHHH--------HHCCCeEEEEEECCcchH
Confidence            788987532  223355677887765 4567766654 4332 222 2222343        3578888775 2 33210


Q ss_pred             -C------CCC-cc----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          157 -G------VGA-QH----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       157 -~------~G~-tH----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                       .      .+. .+    ..++.++-+.. |..-....+++|+...++++++.++|.+|-.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~liev  167 (177)
T cd02010         108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVIDC  167 (177)
T ss_pred             HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence             0      000 01    11223344444 6677788999999999999999999999853

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=92.77  E-value=3.1  Score=36.96  Aligned_cols=143  Identities=18%  Similarity=0.177  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHH-HhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccch
Q 017513           40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN  118 (370)
Q Consensus        40 r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~  118 (370)
                      |+++.++|.+.+.  +.+++.  |.+.+.      ..+.. ...|.+|+..|- =-..+..|.|++++--+|+++... +
T Consensus         1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gs-mG~~lpaAiGa~la~~~~Vv~i~G-D   68 (181)
T TIGR03846         1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGS-MGLASSIGLGLALATDRTVIVIDG-D   68 (181)
T ss_pred             CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeeccc-cccHHHHHHHHHHcCCCcEEEEEc-c
Confidence            4566677777663  444444  444211      12222 123788887542 222356778877764667776654 4


Q ss_pred             HHHH-HHHHHHHHhhhccccCCCCcc-cCEEEEe-CCCCCCCCC-----CcchHHHHHHHccCCCcEEEe-eCCHHHHHH
Q 017513          119 FSMQ-AIDHIINSAAKSNYMSSGQIS-VPIVFRG-PNGAAAGVG-----AQHSHCYAAWYASVPGLKVLS-PYSSEDARG  189 (370)
Q Consensus       119 f~~r-a~dqi~~~~a~~~~~~~g~~~-~pvv~~~-~~G~~~~~G-----~tHs~~~~a~~~~iP~~~V~~-P~d~~e~~~  189 (370)
                      .... .. |-...++        ..+ +|++++. ..+..+-.+     .++..++.++.++. |+.-.. ..+++|+..
T Consensus        69 G~f~m~~-~el~ta~--------~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~  138 (181)
T TIGR03846        69 GSLLMNL-GVLPTIA--------AESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD  138 (181)
T ss_pred             hHHHhhh-hHHHHHH--------HhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence            4332 22 2223333        245 4877765 332211111     11112233444543 444444 789999999


Q ss_pred             HHHHHHhCCCCEEEEe
Q 017513          190 LLKAAIRDPDPVVFLE  205 (370)
Q Consensus       190 ~l~~a~~~~~Pv~i~~  205 (370)
                      .++ +.+.++|++|-.
T Consensus       139 al~-a~~~~~p~li~v  153 (181)
T TIGR03846       139 ALK-ALAMKGPTFIHV  153 (181)
T ss_pred             HHH-HHcCCCCEEEEE
Confidence            997 888889999853

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=92.77  E-value=1.2  Score=46.69  Aligned_cols=113  Identities=14%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC----CC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GV  158 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~----~~  158 (370)
                      |++.+- .|++++.||-|.|+. |...++. |..|.+ ..+..-+.+.  +       ..++||+++.......    +.
T Consensus        42 ~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~-~N~~~gia~A--~-------~~~~Pvl~I~G~~~~~~~~~~~  110 (554)
T TIGR03254        42 RYIGFR-HEQSAGYAAAAAGFLTQKPGVCLTVSAPGF-LNGLTALANA--T-------TNCFPMIMISGSSERHIVDLQQ  110 (554)
T ss_pred             cEEEeC-CHHHHHHHHHHHHHHhCCCEEEEEccCccH-HhHHHHHHHH--H-------hcCCCEEEEEccCCccccccCC
Confidence            677665 999999999999988 5434433 434544 4455555432  2       3689999885221111    11


Q ss_pred             CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      +..+..+..++++.+-.+ .....++.++..+++.|++     .++||||-.|..+
T Consensus       111 ~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv  165 (554)
T TIGR03254       111 GDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV  165 (554)
T ss_pred             CCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence            222222335888887654 5566678888777777765     2589999887654

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=92.66  E-value=1  Score=39.63  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCCcEe-echhhH-HHHHHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           82 GPERVL-DTPITE-AGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        82 ~p~r~~-~~GIaE-~~~v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      .|.||+ +.|..- -..++.|.|++++--||+++... +... .....+ ..+.        +.++|++++. ..+..+ 
T Consensus        40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~G-DGsf~m~~~eL-~ta~--------~~~l~v~ivVlNN~~~g~  109 (175)
T cd02009          40 KTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTG-DLSFLHDLNGL-LLGK--------QEPLNLTIVVINNNGGGI  109 (175)
T ss_pred             CCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEe-hHHHHHhHHHH-Hhcc--------ccCCCeEEEEEECCCCch
Confidence            377888 444322 23556777777664577777654 4432 112211 2222        4678887765 222111 


Q ss_pred             -C---C---C----Cc----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          157 -G---V---G----AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       157 -~---~---G----~t----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                       .   .   +    ..    |..++.++.+++ |+.-....+++|+...++++++.++|.+|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  171 (175)
T cd02009         110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE  171 (175)
T ss_pred             heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence             0   0   0    00    111223444443 556677789999999999999989999883

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=92.62  E-value=1.5  Score=45.86  Aligned_cols=115  Identities=19%  Similarity=0.119  Sum_probs=75.1

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      =||+.+= -||.++.+|.|.|+. |.--+|-..+......++.-|..  |+       +...||+++...-.+.  +.+.
T Consensus        40 i~~I~~R-HEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~--A~-------~d~~Pll~itGqv~~~~~g~~a  109 (550)
T COG0028          40 IRHILVR-HEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD--AY-------MDSVPLLAITGQVPTSLIGTDA  109 (550)
T ss_pred             CcEEEec-cHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH--HH-------hcCCCEEEEeCCccccccCcch
Confidence            4666664 899999999999998 55444443343444445555432  23       3689999885211222  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+-.+ .+...+++|+-..++.|++     .++||+|-.|+..
T Consensus       110 fQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv  162 (550)
T COG0028         110 FQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV  162 (550)
T ss_pred             hhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence            3433225788877643 6778888999999999886     2589999887654

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=92.50  E-value=1.8  Score=38.10  Aligned_cols=111  Identities=17%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             CCcEeechh-hH-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        83 p~r~~~~GI-aE-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.+|+..+. .= -.+++.|.|++++. -++++++.. ..|.+-..+ + ..+.        ..++|++++. ..|..+ 
T Consensus        41 ~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~--------~~~lp~~~iv~NN~~~~~  110 (178)
T cd02014          41 KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAV--------KYNLPVIVVVFNNSDLGF  110 (178)
T ss_pred             CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHH--------HhCCCcEEEEEECCchhH
Confidence            678887543 22 22566777777664 355555543 223333222 2 2343        3678887765 333211 


Q ss_pred             --------C---CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          157 --------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       157 --------~---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                              +   .+.. +..++..+.... |+..+...++.|+...++.+++.++|++|-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie  169 (178)
T cd02014         111 IKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID  169 (178)
T ss_pred             HHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence                    1   1111 112333455554 777888899999999999999989999884

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=92.49  E-value=3.1  Score=43.66  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=69.1

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEEc--ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF--MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t--~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+- .|+++..+|-|.|+..-+|-+++  ..|.. ..+..-+.+.  +       ..++||+++.......  +.|.
T Consensus        43 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~n~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~  111 (574)
T PRK09124         43 EWMHTR-HEEVAAFAAGAEAQLTGELAVCAGSCGPGN-LHLINGLFDC--H-------RNHVPVLAIAAHIPSSEIGSGY  111 (574)
T ss_pred             cEEEeC-cHHHHHHHHHHHHHhhCCcEEEEECCCCCH-HHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCC
Confidence            565554 89999999999999954555443  34433 3445555432  2       3689999885322222  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l  209 (370)
                      .+......+++.+-.+ .....+++++...++.|++    .++||+|-.|...
T Consensus       112 ~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv  163 (574)
T PRK09124        112 FQETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV  163 (574)
T ss_pred             ccccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence            3322335788876543 3336677776666666554    4689999877654

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=92.34  E-value=4.4  Score=37.61  Aligned_cols=37  Identities=22%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             HHHcc--CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          168 AWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       168 a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .+.++  ++++..+...+++|+..+++.+++.++|++|-
T Consensus       158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe  196 (235)
T cd03376         158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH  196 (235)
T ss_pred             HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            34444  33444467899999999999999999999874

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.25  E-value=1.5  Score=46.31  Aligned_cols=114  Identities=17%  Similarity=0.031  Sum_probs=71.5

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G  159 (370)
                      =|++.+ -.|++++.+|-|.|+. |...+ +.+..|.+ ..++.-+.+.  +       ..++||+++........  .+
T Consensus        60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~-~N~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~  128 (587)
T PRK06965         60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGV-TNAVTGIATA--Y-------MDSIPMVVISGQVPTAAIGQD  128 (587)
T ss_pred             CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccH-HHHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence            467777 5999999999999988 53333 34445444 4455555432  2       37899999863222222  22


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .....+++++..+++.|++    . ++||||-.|...
T Consensus       129 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv  182 (587)
T PRK06965        129 AFQECDTVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV  182 (587)
T ss_pred             CcccccHHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence            22222224788887654 4456677777777777765    3 589999877653

>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=92.16  E-value=0.75  Score=41.49  Aligned_cols=115  Identities=15%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             CCcEEEEEec-hhHHHHHHHHHHHHhc--CCceeEEEecccc--------C--CCHHHHHHHHhcCCeEEEEecCCCCCC
Q 017513          238 GKDVTITAFS-KIVGLSLKAAEILAKE--GISAEVINLRSIR--------P--LDRSTINASVRKTNRLVTVEEGFPQHG  304 (370)
Q Consensus       238 g~dv~Iia~G-~~~~~al~Aa~~L~~~--Gi~v~Vi~~~~l~--------P--~d~~~i~~~~~~~~~vvvvEe~~~~GG  304 (370)
                      ..||++.+.| ....+++.|++.|++.  +++++|||+--|-        |  ++.+.+.++.-+.+.|++.     .-|
T Consensus        34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHG  108 (203)
T PF09363_consen   34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHG  108 (203)
T ss_dssp             T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESS
T ss_pred             CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCC
Confidence            3689999999 5568899999999999  9999988876552        2  6667888888777777762     245


Q ss_pred             hHHHHHHHHHhhccCCCCCCEEEEecCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513          305 VGAEICASVIEESFGYLDAPVERIAGADVPM-PYAANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       305 lg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~-~~~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      ....|-..+..+.-   ..++.--|-.+... ..+-++.-..++|--+++..+.+.+
T Consensus       109 Yp~~i~~L~~~R~n---~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai~~~  162 (203)
T PF09363_consen  109 YPWLIHRLLFGRPN---HDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAIRRV  162 (203)
T ss_dssp             EHHHHHHHTTTSTT---GGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCCC---CCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence            67777777765420   12344344333221 1233444444566666665555544

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=92.01  E-value=1.6  Score=45.59  Aligned_cols=115  Identities=13%  Similarity=0.058  Sum_probs=71.4

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =|++.+ -.|+++..||.|.|+.-.+|-+  .|..|. +..++.-+.+.  +       ..++||+++...-...  +.+
T Consensus        40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG-~~N~l~~l~~A--~-------~~~~Pvl~i~G~~~~~~~~~~  108 (549)
T PRK06457         40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPG-SIHLLNGLYDA--K-------MDHAPVIALTGQVESDMIGHD  108 (549)
T ss_pred             CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCc-hhhhHHHHHHH--H-------hcCCCEEEEecCCCccccCCC
Confidence            345544 5999999999999999544443  344444 44455655432  2       3689999885221221  123


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~  210 (370)
                      ..+..+...+++.+-.+ .....+++++...++.|++    .++||+|-.|..+.
T Consensus       109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~  162 (549)
T PRK06457        109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL  162 (549)
T ss_pred             cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence            33322235788887553 4556677777777777665    46999998886543

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=91.97  E-value=1.5  Score=45.92  Aligned_cols=114  Identities=18%  Similarity=0.073  Sum_probs=71.9

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =+|+.+ -.|++++.+|-|.|+. |...++ .+..|. +..++.-|.+..         ..++||+++.......  +.+
T Consensus        46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG-~~n~~~gl~~A~---------~~~~Pvl~i~G~~~~~~~~~~  114 (561)
T PRK06048         46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPG-ATNLVTGIATAY---------MDSVPIVALTGQVPRSMIGND  114 (561)
T ss_pred             CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCc-HHHHHHHHHHHh---------hcCCCEEEEeccCCccccCCC
Confidence            467777 5999999999999988 543333 344444 444566665432         3789999885321211  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .+.-.++.++..+++.|++     .++||||-.|..+
T Consensus       115 ~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv  168 (561)
T PRK06048        115 AFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV  168 (561)
T ss_pred             CccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence            33322224677776543 3335678888888888776     2599999887543

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=91.95  E-value=1.7  Score=45.62  Aligned_cols=112  Identities=21%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+ -.|++++.||-|.|+. |...++ .|..| .+..++.-+.+..         ..++||+++.......  +.+.
T Consensus        44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~Gp-G~~N~l~~i~~A~---------~~~~Pvlvi~G~~~~~~~~~~~  112 (574)
T PRK06882         44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGP-GATNAITGIATAY---------TDSVPLVILSGQVPSNLIGTDA  112 (574)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCc-cHHHHHHHHHHHh---------hcCCCEEEEecCCCccccCCCc
Confidence            67777 5999999999999988 533333 34444 4445666655432         3789999885322222  2223


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL  208 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~  208 (370)
                      .+..+..++++.+-.+ .....+++++..+++.|++     .++||+|-.|..
T Consensus       113 ~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06882        113 FQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD  164 (574)
T ss_pred             ccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence            2322225788876543 5556788888877877776     259999987754

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=91.94  E-value=3  Score=44.11  Aligned_cols=114  Identities=17%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+ -.|++++.||-|.|+. |...++. +..|.. ..++.-|.+.  +       ..++||+++.......  +.+
T Consensus        50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~-~N~l~gia~A--~-------~~~~Pvl~i~G~~~~~~~~~~  118 (595)
T PRK09107         50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGA-TNAVTPLQDA--L-------MDSIPLVCITGQVPTHLIGSD  118 (595)
T ss_pred             CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccH-hHHHHHHHHH--h-------hcCCCEEEEEcCCChhhcCCC
Confidence            467777 5999999999999976 6444443 444544 4455555432  2       3789999886322221  223


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      ..|..+..++++.+-.+ .+...++.++..+++.|++.     ++||||-.|...
T Consensus       119 ~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv  172 (595)
T PRK09107        119 AFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV  172 (595)
T ss_pred             CCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence            33322224777776443 34467888888888888763     589999877654

>PRK07064 hypothetical protein; Provisional

Probab=91.90  E-value=1.6  Score=45.38  Aligned_cols=113  Identities=16%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC-
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G-  159 (370)
                      |++.+ ..|+++..+|.|.|+. |...+ +.|..|..+ .++.-+.+..         ..++||+++...-...  +.+ 
T Consensus        43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~-N~~~~i~~A~---------~~~~Pvl~i~g~~~~~~~~~~~  111 (544)
T PRK07064         43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAG-NAAGALVEAL---------TAGTPLLHITGQIETPYLDQDL  111 (544)
T ss_pred             cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHH-HHHHHHHHHH---------hcCCCEEEEeCCCCcccccCCC
Confidence            56655 4999999999999988 54333 345555444 4566665432         2689999885311111  112 


Q ss_pred             -CcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          160 -AQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       160 -~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                       ..|+. +...+++.+-.+ .....+++++..+++.|++    . ++||||-.|...
T Consensus       112 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv  167 (544)
T PRK07064        112 GYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI  167 (544)
T ss_pred             cccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence             23422 335788887654 4555678888777777775    3 699999877653

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=91.85  E-value=1.3  Score=46.13  Aligned_cols=113  Identities=18%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      |++.+ ..|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+..         ..++||+++.......  +.+.
T Consensus        40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG-~~n~~~~l~~A~---------~~~~Pvl~i~g~~~~~~~~~~~  108 (548)
T PRK08978         40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPG-ATNLITGLADAL---------LDSVPVVAITGQVSSPLIGTDA  108 (548)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHh---------hcCCCEEEEecCCCccccCCCC
Confidence            56666 5999999999999999 54333 3344444 444566555432         3789999986322211  2223


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .+..+-.++++.+-.+.. ...+++++..+++.|++     .++||+|-.|...
T Consensus       109 ~q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv  161 (548)
T PRK08978        109 FQEIDVLGLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI  161 (548)
T ss_pred             CcccchhccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence            222222478887765544 34578888888888876     2589999877543

>PRK08266 hypothetical protein; Provisional

Probab=91.56  E-value=5.1  Score=41.69  Aligned_cols=114  Identities=19%  Similarity=0.111  Sum_probs=72.4

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC-
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV-  158 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~-  158 (370)
                      =|++.+- .|++++.+|.|.|+.--+| + +.|..|.++ .++.-+.+.  +       ..++||+++...-...  +. 
T Consensus        44 i~~v~~~-hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~-N~~~gi~~A--~-------~~~~Pvl~i~g~~~~~~~~~~  112 (542)
T PRK08266         44 IRVIHTR-HEQAAGYMAFGYARSTGRPGVCSVVPGPGVL-NAGAALLTA--Y-------GCNSPVLCLTGQIPSALIGKG  112 (542)
T ss_pred             CeEEeec-cHHHHHHHHHHHHHHhCCCeEEEECCCCcHH-HHHHHHHHH--H-------hhCCCEEEEecCCChhhccCC
Confidence            4666665 9999999999999884443 3 345555444 455655432  2       3789999885321111  12 


Q ss_pred             -CCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          159 -GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       159 -G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                       +.+|...+ ..+++.+-.+ .....+++++...++.|++     .++||++-.|...
T Consensus       113 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv  169 (542)
T PRK08266        113 RGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV  169 (542)
T ss_pred             CCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence             22343224 5788887654 5556667777777777775     2589999877653

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=91.21  E-value=2.2  Score=44.91  Aligned_cols=115  Identities=21%  Similarity=0.104  Sum_probs=71.3

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G  159 (370)
                      =|++.+= .|++++.||.|.|+.--+|-+  .|..| .+..++.-|.+.  +       ..++||+++...-..  .+.+
T Consensus        50 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~  118 (578)
T PRK06112         50 IRQIAYR-TENAGGAMADGYARVSGKVAVVTAQNGP-AATLLVAPLAEA--L-------KASVPIVALVQDVNRDQTDRN  118 (578)
T ss_pred             CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEeCCCC-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCC
Confidence            4677665 999999999999988434433  34333 444555655442  2       378999988632121  1222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~  210 (370)
                      ..|..+-..+++.+-.+ .....+++++...++.|++    . ++||+|-.|....
T Consensus       119 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~  173 (578)
T PRK06112        119 AFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLL  173 (578)
T ss_pred             CccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence            33321225788887654 4456667777777777765    2 5899998876543

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=91.21  E-value=4.2  Score=36.45  Aligned_cols=26  Identities=12%  Similarity=-0.004  Sum_probs=23.5

Q ss_pred             EeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          179 LSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       179 ~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ....++.|+...++.+++.++|++|-
T Consensus       155 ~~v~~~~el~~al~~al~~~gp~vIe  180 (193)
T cd03375         155 GFSGDIKQLKEIIKKAIQHKGFSFVE  180 (193)
T ss_pred             EecCCHHHHHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999984

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=91.17  E-value=2.1  Score=45.06  Aligned_cols=113  Identities=16%  Similarity=0.061  Sum_probs=71.2

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.+|-|.|+. |.-.+ +.|..|.++ .++.-|.+..         ..++||+++...-...  +.+.
T Consensus        40 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~l~~i~~A~---------~~~~Pvl~I~G~~~~~~~~~~~  108 (586)
T PRK06276         40 IHILTR-HEQAAAHAADGYARASGKVGVCVATSGPGAT-NLVTGIATAY---------ADSSPVIALTGQVPTKLIGNDA  108 (586)
T ss_pred             cEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHH-HHHHHHHHHH---------hcCCCEEEEeCCCCccccCCCC
Confidence            677765 999999999999988 53333 334455444 4556555432         3789999885221111  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      .+..+..++++.+-.+ ...-.+++++...++.|++.     ++||||-.|..+
T Consensus       109 ~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv  161 (586)
T PRK06276        109 FQEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV  161 (586)
T ss_pred             CccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence            3322224788876554 33446778888888877762     589999887653

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=91.01  E-value=2.1  Score=44.94  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=72.1

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC----CC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GV  158 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~----~~  158 (370)
                      =|++.+- .|++++.||.|.|+. |...++.+.+...+..+..-|.+..         ..++||+++.......    +.
T Consensus        48 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~---------~~~~Pvl~I~G~~~~~~~~~~~  117 (569)
T PRK09259         48 IRYIGFR-HEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANAT---------TNCFPMIMISGSSEREIVDLQQ  117 (569)
T ss_pred             CCEEeeC-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH---------hcCCCEEEEEccCCcccccccC
Confidence            4677765 999999999999998 5444443333334445566655432         3789999885321111    11


Q ss_pred             CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      +..+..+..++++.+-.+ .+...++.++...++.|++     .++||||-.|..+
T Consensus       118 ~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv  172 (569)
T PRK09259        118 GDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV  172 (569)
T ss_pred             CCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence            222212224788887654 4555678888888887775     2589999887654

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=91.01  E-value=5.8  Score=36.82  Aligned_cols=37  Identities=22%  Similarity=0.156  Sum_probs=28.5

Q ss_pred             HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh-CCCCEEEE
Q 017513          168 AWYAS--VPGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL  204 (370)
Q Consensus       168 a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~i~  204 (370)
                      .+.++  ++.+....+.++.|+..+++.+++ .++|++|-
T Consensus       160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~  199 (237)
T cd02018         160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH  199 (237)
T ss_pred             HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence            44444  444444469999999999999998 89999984

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=90.78  E-value=1.7  Score=41.92  Aligned_cols=34  Identities=24%  Similarity=-0.002  Sum_probs=30.6

Q ss_pred             ccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ..++-+....|+++.++...++.|++.++|.+|-
T Consensus       170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~  203 (300)
T PRK11864        170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIH  203 (300)
T ss_pred             cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            3577788899999999999999999999999985

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=90.77  E-value=7.2  Score=40.98  Aligned_cols=113  Identities=12%  Similarity=0.096  Sum_probs=71.5

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCe-eE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC---
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLK-PV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG---  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~r-p~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G---  159 (370)
                      ||+.+= .|++++.+|-|.|+...+ .+ +.|..| .+..++.-|.+.  +       ..++||+++...-.....+   
T Consensus        52 ~~V~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~N~~~gla~A--~-------~d~~Pvl~I~G~~~~~~~~~~~  120 (569)
T PRK08327         52 EFVICP-HEIVAISMAHGYALVTGKPQAVMVHVDV-GTANALGGVHNA--A-------RSRIPVLVFAGRSPYTEEGELG  120 (569)
T ss_pred             cEEecC-CHHHHHHHHHHHHHhhCCCeEEEEecCH-HHHHHHHHHHHH--h-------hcCCCEEEEeccCCcccccccc
Confidence            777776 799999999999999443 33 334444 444455555432  2       3789999885321111111   


Q ss_pred             ----Ccc-hHH--H-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          160 ----AQH-SHC--Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       160 ----~tH-s~~--~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                          ..| .|+  | .++++.+-.+ .....+++++...++.|++     .++||+|..|..+
T Consensus       121 ~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv  182 (569)
T PRK08327        121 SRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV  182 (569)
T ss_pred             ccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence                111 232  4 4788876543 5567788888888888776     2689999887554

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=90.43  E-value=6.8  Score=41.28  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEEE--cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~--t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.||-|.|+...+|-++  +..|. +..++.-+.+.  +       ..++||+++.......  +.|.
T Consensus        43 ~~i~~r-hE~~A~~mAdgyar~tgk~~v~~v~~GpG-~~N~~~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~  111 (578)
T PRK06546         43 EWVHVR-HEEAAAFAAAAEAQLTGKLAVCAGSCGPG-NLHLINGLYDA--H-------RSGAPVLAIASHIPSAQIGSGF  111 (578)
T ss_pred             eEEEeC-cHHHHHHHHHhHHHhhCCceEEEECCCCc-HHHHHHHHHHH--H-------hcCCCEEEEeCCCCccccCCCC
Confidence            477765 8999999999999995445444  23443 44455555432  2       3689999885322222  2233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l  209 (370)
                      .|..+...+++.+-.+ .....+++++...++.|++    .++||+|-.|...
T Consensus       112 ~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv  163 (578)
T PRK06546        112 FQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI  163 (578)
T ss_pred             ccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence            3322225778876443 5666778888877777765    4689999877654

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=90.36  E-value=2.2  Score=38.25  Aligned_cols=111  Identities=18%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             CCcEeechh-hH-HHHHHHHHHHhcc-CCeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513           83 PERVLDTPI-TE-AGFTGIGVGAAYY-GLKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-  155 (370)
Q Consensus        83 p~r~~~~GI-aE-~~~v~~A~GlA~~-G~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-  155 (370)
                      |.+|+..+- .= -..+..|.|++++ .-++++++.. ..|.+. ...+ ..++        ..++|++++. . +|.. 
T Consensus        43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~-~~eL-~Ta~--------~~~lpvi~vV~NN~~yg~  112 (196)
T cd02013          43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMS-MMEI-MTAV--------RHKLPVTAVVFRNRQWGA  112 (196)
T ss_pred             CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhcc-HHHH-HHHH--------HhCCCeEEEEEECchhHH
Confidence            788886531 11 3356688888776 3466666654 223332 2223 2343        3678988876 3 2321 


Q ss_pred             -C-----CCC-----Cc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---CCCCEEEE
Q 017513          156 -A-----GVG-----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL  204 (370)
Q Consensus       156 -~-----~~G-----~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~  204 (370)
                       .     ..+     .. +..++..+-+++ |+.-..-.++.|+...++++++   .++|++|-
T Consensus       113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie  175 (196)
T cd02013         113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE  175 (196)
T ss_pred             HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence             0     001     11 111223344443 5667788899999999999998   78999984

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>PRK11269 glyoxylate carboligase; Provisional

Probab=90.27  E-value=8.4  Score=40.66  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=72.5

Q ss_pred             CcEeechhhHHHHHHHHHHHhccC-CeeE--EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYG-LKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV  158 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G-~rp~--~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~  158 (370)
                      =||+.+ ..|++++.||-|.|+.- .+|-  +.|..|..+ .++.-+.+.  +       ..++||+++...-...  +.
T Consensus        43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~-N~l~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~  111 (591)
T PRK11269         43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT-DMITGLYSA--S-------ADSIPILCITGQAPRARLHK  111 (591)
T ss_pred             CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCC
Confidence            378877 59999999999999875 4343  446565444 345555432  2       3689999885321221  22


Q ss_pred             CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513          159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (370)
Q Consensus       159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l  209 (370)
                      +..+..+..++++.+-.+ .....+++++..+++.|++.     ++||+|-.|..+
T Consensus       112 ~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv  166 (591)
T PRK11269        112 EDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV  166 (591)
T ss_pred             CcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence            222222225788876544 44457788888888888762     589999877553

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=90.22  E-value=3  Score=44.00  Aligned_cols=113  Identities=15%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G~  160 (370)
                      ||+.+- .|++++.+|.|.|+. |...++ .+..|..+ .++.-|.+.  +       ..++||+++........  .+.
T Consensus        53 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-N~l~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~  121 (585)
T CHL00099         53 KHILVR-HEQGAAHAADGYARSTGKVGVCFATSGPGAT-NLVTGIATA--Q-------MDSVPLLVITGQVGRAFIGTDA  121 (585)
T ss_pred             eEEEec-CHHHHHHHHHHHHHhcCCcEEEEECCCCcHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC
Confidence            567754 999999999999988 543333 44455444 455555432  2       37899999863222221  223


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .|..+..++++.+-.+ .....+++++..+++.|++     .++||||..|..+
T Consensus       122 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv  174 (585)
T CHL00099        122 FQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV  174 (585)
T ss_pred             ccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence            3322224677765433 4455688888888888875     2589999887653

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=90.11  E-value=4.9  Score=38.31  Aligned_cols=142  Identities=13%  Similarity=0.014  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEe-echhhHHHHHHHHHHHhcc-CCeeEEEcccch
Q 017513           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYY-GLKPVVEFMTFN  118 (370)
Q Consensus        41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~-~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~  118 (370)
                      ..+.++|.++....++.+++ .|+|-+       ..+..-+.++++. -.|    ..+.+|.|++++ .-+++++... +
T Consensus        29 ~~v~~al~e~~~~~~d~ivv-sdiGc~-------~~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~G-D   95 (277)
T PRK09628         29 KSIIRAIDKLGWNMDDVCVV-SGIGCS-------GRFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSG-D   95 (277)
T ss_pred             HHHHHHHHHhcCCCCCEEEE-eCcCHH-------HHhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEEC-c
Confidence            44557777665344565544 466621       1111122245554 344    677888888886 3466666644 5


Q ss_pred             HHHHH-HHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC-c----c-h--H--HHHHHHccCCCc
Q 017513          119 FSMQA-IDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA-Q----H-S--H--CYAAWYASVPGL  176 (370)
Q Consensus       119 f~~ra-~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~-t----H-s--~--~~~a~~~~iP~~  176 (370)
                      ..... -.+-...++        +.++|++++. ..   |..++       .|. +    + .  .  ++.++-.+. |+
T Consensus        96 G~f~~~g~~el~ta~--------r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~  166 (277)
T PRK09628         96 GDGLAIGGNHTIHGC--------RRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA  166 (277)
T ss_pred             hHHHHhhHHHHHHHH--------HhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence            43211 122222244        3678887775 22   22111       010 0    0 0  0  112333332 44


Q ss_pred             EE---EeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          177 KV---LSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       177 ~V---~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .-   ....+++|+..+++.|++.++|++|-
T Consensus       167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIe  197 (277)
T PRK09628        167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFD  197 (277)
T ss_pred             ceEEEEccCCHHHHHHHHHHHHhCCCCEEEE
Confidence            32   57899999999999999999999984

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=90.11  E-value=3.5  Score=43.55  Aligned_cols=114  Identities=15%  Similarity=0.038  Sum_probs=71.7

Q ss_pred             cEeechhhHHHHHHHHHHHhccC-CeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYG-LKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G-~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      |++.+- .|++++.||-|.|+.. .+|-+  .|..|.++ .++.-+.+.  +       ..++||+++...-.+.  +.+
T Consensus        43 ~~V~~r-hE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~-N~~~gla~A--~-------~~~~Pvl~I~G~~~~~~~~~~  111 (588)
T TIGR01504        43 RHILAR-HVEGASHMAEGYTRATAGNIGVCIGTSGPAGT-DMITGLYSA--S-------ADSIPILCITGQAPRARLHKE  111 (588)
T ss_pred             cEEeeC-CHHHHHHHHHHHHHhcCCCeEEEEECCCccHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence            666654 8999999999999873 44433  34455443 455555432  2       3689999985221211  222


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~  210 (370)
                      ..+..+..++++.+-.+ .....+++++...++.|++     .++||+|-.|....
T Consensus       112 ~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~  166 (588)
T TIGR01504       112 DFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ  166 (588)
T ss_pred             cccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence            32322225788887654 3445678888888888886     25899998876543

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=90.04  E-value=2.9  Score=43.96  Aligned_cols=113  Identities=13%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G  159 (370)
                      =||+.+- .|++++.+|-|.|+. |.-.++ .+..| .+..++.-+.+.  +       ..++||+++........  .+
T Consensus        39 i~~v~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~n~~~~i~~A--~-------~~~~Pvl~I~G~~~~~~~~~~  107 (575)
T TIGR02720        39 IHYIQVR-HEEVGALAAAADAKLTGKIGVCFGSAGP-GATHLLNGLYDA--K-------EDHVPVLALVGQVPTTGMNMD  107 (575)
T ss_pred             CcEEEec-cHHHHHHHHHHHHHhhCCceEEEeCCCC-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCC
Confidence            3566665 899999999999987 433333 34444 444566665543  2       36899999863222222  22


Q ss_pred             CcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccc
Q 017513          160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l  209 (370)
                      ..| ..| .++++.+-.+ .....+++++...++.|+    ..++||||-.|..+
T Consensus       108 ~~q-~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv  160 (575)
T TIGR02720       108 TFQ-EMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF  160 (575)
T ss_pred             Ccc-eechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence            223 223 5788876433 234455666666655555    45799999887654

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=89.96  E-value=3.5  Score=37.23  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             HHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ++.+.+ |+.-....+++|+...++.+++.++|++|-
T Consensus       145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe  180 (205)
T cd02003         145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV  180 (205)
T ss_pred             HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence            444444 667777799999999999999989999884

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=89.41  E-value=10  Score=36.53  Aligned_cols=34  Identities=21%  Similarity=0.100  Sum_probs=30.6

Q ss_pred             ccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ...+-+....|+++.|+...++.|.+.++|.+|.
T Consensus       174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~  207 (299)
T PRK11865        174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ  207 (299)
T ss_pred             cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            5577788889999999999999999999999985

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=89.40  E-value=9.3  Score=39.86  Aligned_cols=114  Identities=16%  Similarity=0.065  Sum_probs=66.3

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC-
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~-  160 (370)
                      |++.+ -.|+++.-+|-|.|+. |...++.+.+......+..-|..  |+       ..++||+++...-...  +.+. 
T Consensus        40 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~  109 (535)
T TIGR03394        40 PLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AY-------AEKSPVVVISGAPGTTEGNAGLL  109 (535)
T ss_pred             eEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hh-------hcCCCEEEEECCCCcccccCCce
Confidence            67764 5999999999999998 54444433333344455565543  22       3689999985321111  2222 


Q ss_pred             -cchH--H-H-HHHHccCCCcEEEeeCCHHHHHH----HHHHHHhCCCCEEEEecccc
Q 017513          161 -QHSH--C-Y-AAWYASVPGLKVLSPYSSEDARG----LLKAAIRDPDPVVFLENELL  209 (370)
Q Consensus       161 -tHs~--~-~-~a~~~~iP~~~V~~P~d~~e~~~----~l~~a~~~~~Pv~i~~~~~l  209 (370)
                       +|+.  . + ..+++.+-.+. ....++.++..    +++.|+..++||+|-.|..+
T Consensus       110 ~~~~~~~~~~~~~~~~~vtk~~-~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv  166 (535)
T TIGR03394       110 LHHQGRTLDSQFQVFKEVTCDQ-AVLDDPATAPAEIARVLGSARELSRPVYLEIPRDM  166 (535)
T ss_pred             eEeeccchHHHHHhhhhheEEE-EEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence             2422  1 2 36777654332 22344544444    44555556799999887654

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK06163 hypothetical protein; Provisional

Probab=89.12  E-value=16  Score=33.08  Aligned_cols=113  Identities=14%  Similarity=0.069  Sum_probs=63.5

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC-CCC--CC
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAA--AG  157 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~-G~~--~~  157 (370)
                      |.+|+..| +=-..+.+|.|++++. -+++++... +...-.--|-...++.       ..++|++++. .. +..  +.
T Consensus        50 ~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~G-DG~f~m~~~eL~Ta~~-------~~~lpi~ivV~NN~~yg~~~~  120 (202)
T PRK06163         50 PQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEG-DGSLLMQLGALGTIAA-------LAPKNLTIIVMDNGVYQITGG  120 (202)
T ss_pred             CCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEc-chHHHHHHHHHHHHHH-------hcCCCeEEEEEcCCchhhcCC
Confidence            77888644 2334455778887763 466676655 4432111122223331       1256776665 32 221  11


Q ss_pred             C--CCcchHHHHHHHccCCCcE-EEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          158 V--GAQHSHCYAAWYASVPGLK-VLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       158 ~--G~tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                      .  ...+..++.++.+++ |+. -+...+.+|+...++.+++.++|++|-.
T Consensus       121 ~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV  170 (202)
T PRK06163        121 QPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSGPGPSFIAV  170 (202)
T ss_pred             ccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            1  111222334455554 554 4567899999999999999899998753

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=88.68  E-value=8  Score=40.88  Aligned_cols=115  Identities=18%  Similarity=0.134  Sum_probs=69.6

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G  159 (370)
                      =||+.+- .|++++.+|-|.|+. |...++ .|..| .+..++.-|.+  |+       ..++||+++...-...  +.+
T Consensus        43 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GP-G~~n~~~gi~~--A~-------~d~vPvl~I~G~~~~~~~~~~  111 (597)
T PRK08273         43 PEFVQAR-HEEMAAFMAVAHAKFTGEVGVCLATSGP-GAIHLLNGLYD--AK-------LDHVPVVAIVGQQARAALGGH  111 (597)
T ss_pred             CeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHH--HH-------hcCCCEEEEecCCchhhcCCC
Confidence            4567665 999999999999988 544444 34444 44455565543  22       3689999885211111  112


Q ss_pred             CcchHHHHHHHccCC-CcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513          160 AQHSHCYAAWYASVP-GLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP-~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~  210 (370)
                      ..+..+..++++.+- -+ .....+++++...++.|++    ..+||+|..|..+.
T Consensus       112 ~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~  166 (597)
T PRK08273        112 YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ  166 (597)
T ss_pred             CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence            222222246777754 22 4456667777776666654    46899998876543

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=88.62  E-value=2.4  Score=36.37  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG  157 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~  157 (370)
                      |.+++..+.  +=-..++.|.|++++. -++++.... +... ..++.+. .+.        ..++|++++. ..+..+-
T Consensus        36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~G-DG~~~~~~~~l~-ta~--------~~~~~~~~iv~nN~~~~~  105 (168)
T cd00568          36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAG-DGGFMMTGQELA-TAV--------RYGLPVIVVVFNNGGYGT  105 (168)
T ss_pred             CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEc-CcHHhccHHHHH-HHH--------HcCCCcEEEEEECCccHH
Confidence            445554322  2234556777777764 244554444 3332 2344332 233        2577877765 2332110


Q ss_pred             CC-------------Cc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          158 VG-------------AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       158 ~G-------------~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .+             .. +..++.++.+.. |+......++.|+...++++.+.++|++|-
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~  165 (168)
T cd00568         106 IRMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE  165 (168)
T ss_pred             HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence            00             11 111233555553 677788889999999999999889999884

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=88.37  E-value=5.8  Score=35.07  Aligned_cols=111  Identities=23%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.+|+..+-  +=-..+..|.|++++. -+++++... ..|.+.. ..+ ..++        ..++|++++. ..+..+ 
T Consensus        40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~-~eL-~ta~--------~~~lpi~ivV~nN~~~~~  109 (186)
T cd02015          40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNI-QEL-ATAA--------QYNLPVKIVILNNGSLGM  109 (186)
T ss_pred             CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccH-HHH-HHHH--------HhCCCeEEEEEECCccHH
Confidence            788887542  1123567888888764 356665544 2233322 222 2344        3678887775 333211 


Q ss_pred             ----------C-C-CCcc--hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          157 ----------G-V-GAQH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       157 ----------~-~-G~tH--s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                                + . +..+  ..++..+.+++ |+.-....+..|+...++.+++.++|++|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie  170 (186)
T cd02015         110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD  170 (186)
T ss_pred             HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence                      0 0 1111  11223444544 566667788999999999999989999984

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=87.87  E-value=3.7  Score=34.95  Aligned_cols=110  Identities=22%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             CCcEeec--hhhHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513           83 PERVLDT--PITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-  155 (370)
Q Consensus        83 p~r~~~~--GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-  155 (370)
                      |.||++.  .-+=-..+++|.|++++. -++++.... +... .....+. .+.        ..++|++++. . .+.. 
T Consensus        18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~G-DG~f~~~~~el~-ta~--------~~~~~v~~vv~nN~~~~~   87 (153)
T PF02775_consen   18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITG-DGSFLMSLQELA-TAV--------RYGLPVVIVVLNNGGYGM   87 (153)
T ss_dssp             TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEE-HHHHHHHGGGHH-HHH--------HTTSSEEEEEEESSBSHH
T ss_pred             CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecC-CcceeeccchhH-HHh--------hccceEEEEEEeCCcceE
Confidence            7888872  224445677788888873 456666544 4432 1122232 333        3577887775 2 2211 


Q ss_pred             -C----CCCC----------cchHHHHHHHccCCCcEEEeeCCH--HHHHHHHHHHHhCCCCEEE
Q 017513          156 -A----GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF  203 (370)
Q Consensus       156 -~----~~G~----------tHs~~~~a~~~~iP~~~V~~P~d~--~e~~~~l~~a~~~~~Pv~i  203 (370)
                       .    ..+.          .|..++..+.+.. |+..+.-.++  +|+...++++++.++|++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI  151 (153)
T PF02775_consen   88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI  151 (153)
T ss_dssp             HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred             eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence             0    0111          2223344555554 5666665555  9999999999999999987

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=87.61  E-value=12  Score=35.91  Aligned_cols=143  Identities=19%  Similarity=0.113  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeech-h--hHHHHHHHHHHHhccC-CeeEEE
Q 017513           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPVVE  113 (370)
Q Consensus        38 ~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~G-I--aE~~~v~~A~GlA~~G-~rp~~~  113 (370)
                      ..-.++.++|.++....++.+++ .|+|.+.           .+ + +|++.+ .  .=-.++.+|.|++++. -+++++
T Consensus        27 ~il~~l~~al~~l~~~p~d~vvv-sdiGc~~-----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~   92 (286)
T PRK11867         27 SILAALQRALAELGLDPENVAVV-SGIGCSG-----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIV   92 (286)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEE-eCCcccc-----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEE
Confidence            35677778887665555565555 4666221           01 1 344432 1  1234566778877763 466666


Q ss_pred             cccchH--HHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC----c-c-h----HHHHHHH
Q 017513          114 FMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA----Q-H-S----HCYAAWY  170 (370)
Q Consensus       114 t~~~~f--~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~----t-H-s----~~~~a~~  170 (370)
                      +.. +.  .+-....+.+ ++        +.++|++++. ..   |..++       .|.    + + .    .+..++.
T Consensus        93 i~G-DG~~f~mg~~eL~t-A~--------r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA  162 (286)
T PRK11867         93 VTG-DGDALAIGGNHFIH-AL--------RRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELA  162 (286)
T ss_pred             EeC-ccHHHhCCHHHHHH-HH--------HhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHH
Confidence            654 44  3344444543 33        3678877765 22   21111       010    1 0 0    1123344


Q ss_pred             ccC--CCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          171 ASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       171 ~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .+.  ..+......+++|+..+++.|++.++|++|-
T Consensus       163 ~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe  198 (286)
T PRK11867        163 LGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVE  198 (286)
T ss_pred             HHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            443  2233335789999999999999999999984

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=87.47  E-value=12  Score=39.02  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC--
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV--  158 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~--  158 (370)
                      ||+.+ -.|++++.||-|.|+. | +.++. +..|.. ..++.-+.+  |+       ..++||+++...-...  +.  
T Consensus        41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~-~n~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~  108 (539)
T TIGR03393        41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGE-LSAINGIAG--SY-------AEHLPVIHIVGAPGTAAQQRGE  108 (539)
T ss_pred             cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccH-HHHhhHHHH--Hh-------hccCCEEEEECCCCcchhhcCc
Confidence            55655 4999999999999998 6 56654 545544 445555543  22       3689999885211110  00  


Q ss_pred             ------CC-cchHHHHHHHccCCCcE-EEeeCC-HHHHHHHHHHHHhCCCCEEEEecccccC
Q 017513          159 ------GA-QHSHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG  211 (370)
Q Consensus       159 ------G~-tHs~~~~a~~~~iP~~~-V~~P~d-~~e~~~~l~~a~~~~~Pv~i~~~~~l~~  211 (370)
                            +. .+ |....+++.+--+. +..|.+ +.++.++++.|+..++||+|-.|..+..
T Consensus       109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~  169 (539)
T TIGR03393       109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA  169 (539)
T ss_pred             eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence                  10 12 22235555543221 224566 6888888888988889999988876543

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=87.12  E-value=6.4  Score=41.15  Aligned_cols=147  Identities=18%  Similarity=0.333  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccCCeeEEEccc-chH
Q 017513           43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMT-FNF  119 (370)
Q Consensus        43 ~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G~rp~~~t~~-~~f  119 (370)
                      +-+.|.+.+..+++.++++ |.+.   .......+..-..|.+|++.+.  +=-..+..|.|++++--|+++.+.. ..|
T Consensus       371 ~~~~l~~~l~~~~~~ivv~-d~~~---~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf  446 (554)
T TIGR03254       371 ALEAIRDVLKDNPDIYLVN-EGAN---TLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF  446 (554)
T ss_pred             HHHHHHHhcCCCCCEEEEe-CCch---HHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence            4455666665445666554 3221   1111112222223788887642  2224556777777775577777655 223


Q ss_pred             HHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCCC-----CC-----Cc--chHHHHHHHccCCCcEEEeeCCHH
Q 017513          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAAG-----VG-----AQ--HSHCYAAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~~-----~G-----~t--Hs~~~~a~~~~iP~~~V~~P~d~~  185 (370)
                      .+-+.|  ...++        +.++|++++. . +|....     .+     ..  +..++.++-+.+ |..-+.-.+++
T Consensus       447 ~m~~~E--L~Ta~--------r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~  515 (554)
T TIGR03254       447 GFSGME--VETIC--------RYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD  515 (554)
T ss_pred             cccHHH--HHHHH--------HcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence            322222  23455        3678887765 3 332110     01     11  111233444444 55667779999


Q ss_pred             HHHHHHHHHHhCCCCEEEE
Q 017513          186 DARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       186 e~~~~l~~a~~~~~Pv~i~  204 (370)
                      |+...++++++.++|++|-
T Consensus       516 el~~al~~a~~~~~p~lIe  534 (554)
T TIGR03254       516 ELKAALNEALASGKPTLIN  534 (554)
T ss_pred             HHHHHHHHHHhCCCCEEEE
Confidence            9999999999989999884

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=87.08  E-value=13  Score=32.89  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=58.5

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcc-cCEEEEe-C-CCCC--CC
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIS-VPIVFRG-P-NGAA--AG  157 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~-~pvv~~~-~-~G~~--~~  157 (370)
                      |.+|+..|.- -..+..|.|++++-.+++++... +.....--|-...++.        .+ .|++++. . ++..  +.
T Consensus        35 ~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~G-DG~f~m~~~el~ta~~--------~~~~~l~vvV~NN~~~~~~~~  104 (179)
T cd03372          35 PLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDG-DGSLLMNLGALATIAA--------EKPKNLIIVVLDNGAYGSTGN  104 (179)
T ss_pred             ccccccccch-hhHHHHHHHHHhcCCCcEEEEEC-CcHHHhCHHHHHHHHH--------cCCCCEEEEEEcCccccccCC
Confidence            6777754422 24446788888764477777755 4432111122223332        33 3454443 3 3321  11


Q ss_pred             --CCCcchHHHHHHHccCCCcEEEeeC-CHHHHHHHHHHHHhCCCCEEEEe
Q 017513          158 --VGAQHSHCYAAWYASVPGLKVLSPY-SSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       158 --~G~tHs~~~~a~~~~iP~~~V~~P~-d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                        ....+..++..+.++. |+.-.... +++|+...+.++.  ++|.+|-.
T Consensus       105 ~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lIev  152 (179)
T cd03372         105 QPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFIHV  152 (179)
T ss_pred             CCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEEEE
Confidence              1111222333444443 45555566 9999999999998  78998743

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=86.96  E-value=15  Score=32.78  Aligned_cols=112  Identities=13%  Similarity=0.060  Sum_probs=60.3

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEe-C-CCC--CC
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRG-P-NGA--AA  156 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~-~-~G~--~~  156 (370)
                      |.+|++.|- =-..++.|.|++++. -+++++... +.....--|-...++        ..++ |++++. . ++.  ..
T Consensus        41 ~~~~~~~g~-mG~~lpaAiGaala~p~~~Vv~i~G-DG~f~m~~~eL~ta~--------~~~l~~i~ivV~NN~~yg~~~  110 (188)
T cd03371          41 AQDFLTVGS-MGHASQIALGIALARPDRKVVCIDG-DGAALMHMGGLATIG--------GLAPANLIHIVLNNGAHDSVG  110 (188)
T ss_pred             cCceeecCc-cccHHHHHHHHHHhCCCCcEEEEeC-CcHHHhhccHHHHHH--------HcCCCCcEEEEEeCchhhccC
Confidence            488987542 222467778877653 456666644 443211112222333        2344 454443 3 332  11


Q ss_pred             CCCC-cchHHHHHHHccCCCcE-EEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          157 GVGA-QHSHCYAAWYASVPGLK-VLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       157 ~~G~-tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                      +... .+..++..+.+.+ |+. +....+++|+..+++++++.++|++|-.
T Consensus       111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIev  160 (188)
T cd03371         111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIEV  160 (188)
T ss_pred             CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            1101 1112334455544 454 3456799999999999999889999853

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=86.96  E-value=16  Score=31.78  Aligned_cols=111  Identities=20%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             CCcEeechhhH-HHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC-CC--
Q 017513           83 PERVLDTPITE-AGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AA--  155 (370)
Q Consensus        83 p~r~~~~GIaE-~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~~--  155 (370)
                      |.+|+..+-.= -..+..|.|++++- -+++++... +.. +.....+ ..+.        ..++|++++. ..+ ..  
T Consensus        40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~G-DG~f~~~~~el-~ta~--------~~~~p~~~iV~nN~~~~~~  109 (178)
T cd02002          40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIG-DGSFMYTIQAL-WTAA--------RYGLPVTVVILNNRGYGAL  109 (178)
T ss_pred             CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEc-CchhhccHHHH-HHHH--------HhCCCeEEEEEcCccHHHH
Confidence            78888764311 12355777777663 355555543 322 2222222 2333        3578888775 222 11  


Q ss_pred             C-------CC--------CC---cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          156 A-------GV--------GA---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       156 ~-------~~--------G~---tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .       +.        +.   .+..++..+.+.. |+..+.-.++.|+...++++.+.++|++|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~  175 (178)
T cd02002         110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE  175 (178)
T ss_pred             HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            0       00        00   1111223444443 566677788999999999999988999873

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=86.58  E-value=9.9  Score=36.31  Aligned_cols=147  Identities=17%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~  115 (370)
                      -+.-.++.+++.++-...++.+++ .|.+.+    .....+   +.+..+.-.   =-..+.+|.|++++. -+++++..
T Consensus        17 ~~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~----~~~~~~---~~~~~~~~~---mG~alp~AiGaklA~pd~~VVai~   85 (280)
T PRK11869         17 FGIRNALMKALSELNLKPRQVVIV-SGIGQA----AKMPHY---INVNGFHTL---HGRAIPAATAVKATNPELTVIAEG   85 (280)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEE-eCchHh----hhHHHH---ccCCCCCcc---cccHHHHHHHHHHHCCCCcEEEEE
Confidence            346688888887765555555544 455521    111111   112222111   123567777777775 47777764


Q ss_pred             cchHHHHH--HHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------C---------CCcch-HHHHHHHcc
Q 017513          116 TFNFSMQA--IDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------V---------GAQHS-HCYAAWYAS  172 (370)
Q Consensus       116 ~~~f~~ra--~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~---------G~tHs-~~~~a~~~~  172 (370)
                      . +.....  +..+.+ ++        ..++|++++. ..   |..++       .         |.... .++..+..+
T Consensus        86 G-DG~~~~iG~~eL~t-A~--------r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a  155 (280)
T PRK11869         86 G-DGDMYAEGGNHLIH-AI--------RRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIA  155 (280)
T ss_pred             C-chHHhhCcHHHHHH-HH--------HhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHH
Confidence            4 555332  455543 44        3577877765 12   21111       0         10011 122233333


Q ss_pred             --CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          173 --VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       173 --iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                        .+.+....+.++.|+...++.|++.++|++|-
T Consensus       156 ~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe  189 (280)
T PRK11869        156 LDASFVARTFSGDIEETKEILKEAIKHKGLAIVD  189 (280)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence              44344444999999999999999999999984

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=86.18  E-value=10  Score=39.75  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCee--EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp--~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~  160 (370)
                      ||+.+- .|++++.+|-|.|+...+|  ++.|..| .+..++.-|.+.  +       ..++||+++.......  +.|.
T Consensus        49 ~~v~~~-hE~~A~~aAdgyar~tg~~~v~~vt~Gp-G~~N~l~~i~~A--~-------~~~~Pvl~IsG~~~~~~~~~~~  117 (568)
T PRK07449         49 RLHTHF-DERSAGFLALGLAKASKRPVAVIVTSGT-AVANLYPAVIEA--G-------LTGVPLIVLTADRPPELRDCGA  117 (568)
T ss_pred             EEEeec-CcccHHHHHHHHHHhhCCCEEEEECCcc-HHHhhhHHHHHH--h-------hcCCcEEEEECCCCHHHhcCCC
Confidence            566654 9999999999999884443  4555554 445566666532  2       3789999986322211  2344


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHH-----HHHHHHHHHH---h-CCCCEEEEeccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSE-----DARGLLKAAI---R-DPDPVVFLENEL  208 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~-----e~~~~l~~a~---~-~~~Pv~i~~~~~  208 (370)
                      .|..+..++++.+-...+-.|....     .+..+++.+.   . .++||+|-.|..
T Consensus       118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D  174 (568)
T PRK07449        118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR  174 (568)
T ss_pred             CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence            4433335788776555555565521     1233455433   2 369999987754

>PLN02573 pyruvate decarboxylase

Probab=85.95  E-value=16  Score=38.48  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC---CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---AGVG  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~---~~~G  159 (370)
                      ||+.+ -.|+++..||-|.|+. | .+++ .|+.|.. ..+..-+.+..         ..++||+++...-..   +..+
T Consensus        56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~-~n~~~gla~A~---------~d~~Pvl~I~G~~~~~~~~~~~  123 (578)
T PLN02573         56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGG-LSVLNAIAGAY---------SENLPVICIVGGPNSNDYGTNR  123 (578)
T ss_pred             eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccH-HHHHHHHHHHH---------HhCCCEEEEECCCChhhhhcCc
Confidence            45544 4899999999999987 7 5554 4444444 44555554332         268999998531111   1122


Q ss_pred             CcchH-------HHHHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccc
Q 017513          160 AQHSH-------CYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs~-------~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l  209 (370)
                      ..|+.       ...++++.+-.+ .....+++++...++.|+    ..++||||-.|..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv  183 (578)
T PLN02573        124 ILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL  183 (578)
T ss_pred             eeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence            22311       113677765433 344455666655555555    45789999887654

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=85.43  E-value=3.6  Score=41.66  Aligned_cols=114  Identities=18%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~  160 (370)
                      +++.+ ..|+++.-||-|.|+. |...+ +.|..| ....++.-+.+.  +       ..++||+++...-..  .+.|.
T Consensus        40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~Gp-G~~N~l~gl~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~  108 (432)
T TIGR00173        40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGT-AVANLLPAVIEA--S-------YSGVPLIVLTADRPPELRGCGA  108 (432)
T ss_pred             EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcc-hHhhhhHHHHHh--c-------ccCCcEEEEeCCCCHHHhCCCC
Confidence            55554 5999999999999998 53333 444444 444455555432  2       378999998522111  12233


Q ss_pred             cchHHHHHHHccCCCcEE--EeeCC-------HHHHHHHHHHHHh-CCCCEEEEecccc
Q 017513          161 QHSHCYAAWYASVPGLKV--LSPYS-------SEDARGLLKAAIR-DPDPVVFLENELL  209 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V--~~P~d-------~~e~~~~l~~a~~-~~~Pv~i~~~~~l  209 (370)
                      .+..+..++++.+-.+..  -.|.+       +..+.++++.|.. .++||+|-.|...
T Consensus       109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv  167 (432)
T TIGR00173       109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE  167 (432)
T ss_pred             CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence            232222467776554333  23443       1233444444444 3589999877543

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=85.14  E-value=4.9  Score=42.09  Aligned_cols=112  Identities=21%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.+|+..+-  +=-..+..|.|++++. -+++++... ..|.+.+.| + ..+.        ..++|++++. ..|..+ 
T Consensus       409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L-~ta~--------~~~lpvi~vV~NN~~~g~  478 (564)
T PRK08155        409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-M-ATAA--------ENQLDVKIILMNNEALGL  478 (564)
T ss_pred             CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-H-HHHH--------HhCCCeEEEEEeCCcccc
Confidence            788997643  3334677888888774 355555544 334433333 2 2333        3578887765 333111 


Q ss_pred             ---------C---CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       157 ---------~---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                               +   .+..  +..++.++.+++ |+.-....+.+|+...++.+++.++|++|-.
T Consensus       479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  540 (564)
T PRK08155        479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIHV  540 (564)
T ss_pred             cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence                     0   1111  112334555555 6777889999999999999999899999853

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=85.08  E-value=9.4  Score=39.89  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             CCcEeech-hh-HHHHHHHHHHHhccC--CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC
Q 017513           83 PERVLDTP-IT-EAGFTGIGVGAAYYG--LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA  155 (370)
Q Consensus        83 p~r~~~~G-Ia-E~~~v~~A~GlA~~G--~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~  155 (370)
                      |.+|+..+ .. =-..+..|.|++++.  -|+++++.. +... .....+ ..+.        ..++|++++. . +|..
T Consensus       386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~G-DGsf~~~~~eL-~Ta~--------~~~lpi~ivV~NN~~~g  455 (549)
T PRK06457        386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVG-DGGFTMTMMEL-ITAK--------KYDLPVKIIIYNNSKLG  455 (549)
T ss_pred             CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEc-ccHHhhhHHHH-HHHH--------HHCCCeEEEEEECCccc
Confidence            67777642 11 112455778888774  477777654 4332 222222 3344        3577877765 2 3321


Q ss_pred             --------CCC---CCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          156 --------AGV---GAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       156 --------~~~---G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                              .+.   +.. +..++.++-.++ |..-....+++|+...++++++.++|.+|-
T Consensus       456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  515 (549)
T PRK06457        456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD  515 (549)
T ss_pred             hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence                    000   111 111233444444 667778899999999999999989999984

>PRK08617 acetolactate synthase; Reviewed

Probab=84.86  E-value=6.7  Score=40.96  Aligned_cols=111  Identities=23%  Similarity=0.284  Sum_probs=64.6

Q ss_pred             hCCCcEeechhhHHHHHH----HHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC
Q 017513           81 YGPERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG  153 (370)
Q Consensus        81 ~~p~r~~~~GIaE~~~v~----~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G  153 (370)
                      +.|.+|+..+  -...+|    .|.|++++. -++++++.. ..|.+.+.| + ..+.        ..++|++++. ..|
T Consensus       402 ~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~e-L-~Ta~--------~~~lpv~~vV~NN~  469 (552)
T PRK08617        402 YEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAME-L-ETAV--------RLKLNIVHIIWNDG  469 (552)
T ss_pred             cCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHH-H-HHHH--------HhCCCeEEEEEECC
Confidence            3377887643  123555    888888763 356665544 223333222 2 3344        3678887665 333


Q ss_pred             CCCC------------CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          154 AAAG------------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       154 ~~~~------------~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ..+-            .|.. +..++.++-+.+ |+.-....+++|+...++++++.++|.+|-
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie  532 (552)
T PRK08617        470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID  532 (552)
T ss_pred             ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence            2110            0111 112223444444 677788999999999999999888999984

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=84.72  E-value=8.7  Score=33.74  Aligned_cols=98  Identities=22%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             HHHHHHHhccC-CeeEEEcccchHHH--HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCC--CCCC----C-----C
Q 017513           97 TGIGVGAAYYG-LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGA--AAGV----G-----A  160 (370)
Q Consensus        97 v~~A~GlA~~G-~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~--~~~~----G-----~  160 (370)
                      ++.|.|++++. -++++.... +...  -++..+. .+.        ..++|++++. . .+.  .+..    +     .
T Consensus        57 l~~AiGa~la~p~~~Vv~i~G-DG~f~~~g~~eL~-ta~--------~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~  126 (178)
T cd02008          57 IGVAIGMAKASEDKKVVAVIG-DSTFFHSGILGLI-NAV--------YNKANITVVILDNRTTAMTGGQPHPGTGKTLTE  126 (178)
T ss_pred             HHHHhhHHhhCCCCCEEEEec-ChHHhhccHHHHH-HHH--------HcCCCEEEEEECCcceeccCCCCCCCCcccccC
Confidence            34666666653 456666544 4443  2233333 333        3678887765 2 222  1110    0     0


Q ss_pred             cch-HHHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          161 QHS-HCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       161 tHs-~~~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .+. .++..+.++  +....|-.|.+-+++...++.+++.++|.+|.
T Consensus       127 ~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~  173 (178)
T cd02008         127 PTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII  173 (178)
T ss_pred             CCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence            011 223344444  44445555555555568889999889999884

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=83.84  E-value=4.8  Score=36.16  Aligned_cols=111  Identities=15%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513           83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG  157 (370)
Q Consensus        83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~  157 (370)
                      |.+|++.+- . =-..+..|.|++++. -|+++++.. +... ... |-...+.        ..++|++++. ..+..+-
T Consensus        47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~G-DG~f~m~~-~eL~Ta~--------~~~lpviivV~NN~~yg~  116 (202)
T cd02006          47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSG-DYDFQFMI-EELAVGA--------QHRIPYIHVLVNNAYLGL  116 (202)
T ss_pred             CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEe-ChHhhccH-HHHHHHH--------HhCCCeEEEEEeCchHHH
Confidence            788998642 2 122556888887763 467776654 3332 222 2222333        3678887775 2321110


Q ss_pred             ---------C----CCcc-----------hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Q 017513          158 ---------V----GAQH-----------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL  204 (370)
Q Consensus       158 ---------~----G~tH-----------s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~  204 (370)
                               .    +..+           ..++..+-+++ |+.-+...++.|+...++.+++    .++|++|-
T Consensus       117 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie  190 (202)
T cd02006         117 IRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE  190 (202)
T ss_pred             HHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence                     0    0001           01122333333 5677888999999999999995    57899884

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=83.60  E-value=21  Score=34.49  Aligned_cols=143  Identities=18%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh---hHHHHHHHHHHHhcc-CCeeEE
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI---TEAGFTGIGVGAAYY-GLKPVV  112 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI---aE~~~v~~A~GlA~~-G~rp~~  112 (370)
                      -..-.++.++|.++.-..++++++ .|+|.+.           .. | +|+++.-   .=-.++.+|.|++++ .-++++
T Consensus        27 ~~i~~~i~~al~~l~l~p~d~viv-sdiG~s~-----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~VV   92 (301)
T PRK05778         27 FGILNAIIQALAELGLDPDKVVVV-SGIGCSS-----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEVI   92 (301)
T ss_pred             hHHHHHHHHHHHHhcCCCCCEEEE-eCCcHhh-----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcEE
Confidence            345567777777663323444444 3666211           11 1 1333211   002356677887776 346666


Q ss_pred             EcccchHH--HHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCCC-------C---------Cc-chHHHHHH
Q 017513          113 EFMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAGV-------G---------AQ-HSHCYAAW  169 (370)
Q Consensus       113 ~t~~~~f~--~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~~-------G---------~t-Hs~~~~a~  169 (370)
                      ++.. +..  ......+.+ ++        +.++|++++. ..   |..++.       |         .. +..++..+
T Consensus        93 ~i~G-DG~~~~mg~~eL~t-A~--------r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~l  162 (301)
T PRK05778         93 VVGG-DGDLASIGGGHFIH-AG--------RRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCAL  162 (301)
T ss_pred             EEeC-ccHHHhccHHHHHH-HH--------HHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHH
Confidence            6644 443  233444543 34        3678877765 22   211110       1         00 01122233


Q ss_pred             HccCCCcEEE---eeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          170 YASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       170 ~~~iP~~~V~---~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ..+. |..-+   ...++.|+..+++.|++.++|++|-
T Consensus       163 A~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe  199 (301)
T PRK05778        163 ALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID  199 (301)
T ss_pred             HHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence            3333 44433   6899999999999999999999984

>PRK06154 hypothetical protein; Provisional

Probab=82.86  E-value=13  Score=39.11  Aligned_cols=149  Identities=19%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-C-CeeEE
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV  112 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G-~rp~~  112 (370)
                      +.++..+++.+.|.++.   =+.|+.-+  +    . .+.+.+.+ - .=||+.+ -.|++++.+|.|.|+. | .+|-+
T Consensus        18 ~~~~~a~~l~~~L~~~G---V~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv   84 (565)
T PRK06154         18 KTMKVAEAVAEILKEEG---VELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV   84 (565)
T ss_pred             CcccHHHHHHHHHHHcC---CCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence            34445666666665432   23333322  1    1 22344432 2 2467765 4999999999999986 3 34444


Q ss_pred             --EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCcchHHHHHHHccCCCcEEEeeCCHHHHH
Q 017513          113 --EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR  188 (370)
Q Consensus       113 --~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~  188 (370)
                        .|..|.++ .+..-+.+  |+       ..++||+++.......  +.+..+.+  ..+++.+-.+ .....+++++.
T Consensus        85 ~~~t~GPG~~-N~~~gla~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk~-~~~v~~~~~~~  151 (565)
T PRK06154         85 FAVQYGPGAE-NAFGGVAQ--AY-------GDSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITKW-CEQVTLPDEVP  151 (565)
T ss_pred             EEECCCccHH-HHHHHHHH--Hh-------hcCCCEEEEeCCCCcccccCCCCcch--hhhHhhccee-EEECCCHHHHH
Confidence              45565554 45555543  22       3789999885211111  11222322  3677776543 55677888888


Q ss_pred             HHHHHHHh-----CCCCEEEEecccc
Q 017513          189 GLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       189 ~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      ..++.|++     .++||||-.|..+
T Consensus       152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv  177 (565)
T PRK06154        152 ELMRRAFTRLRNGRPGPVVLELPVDV  177 (565)
T ss_pred             HHHHHHHHHHhcCCCceEEEecchHH
Confidence            77777775     3689999877654

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=82.51  E-value=3.4  Score=32.07  Aligned_cols=66  Identities=17%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-c----CCeEEEEecCCCCCChHHH
Q 017513          238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-K----TNRLVTVEEGFPQHGVGAE  308 (370)
Q Consensus       238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~----~~~vvvvEe~~~~GGlg~~  308 (370)
                      +.+++|++.|    +....+.+|.+.|++.|++.+.+|+..    |.+ +.+.+. .    +=+.|++... ..||+...
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g~-~iGG~~~l   80 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNGE-LVGGCDIV   80 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECCE-EEeCHHHH
Confidence            4679999988    477888899999999999999999753    333 333322 1    2245666654 46888754


Q ss_pred             H
Q 017513          309 I  309 (370)
Q Consensus       309 i  309 (370)
                      .
T Consensus        81 ~   81 (90)
T cd03028          81 K   81 (90)
T ss_pred             H
Confidence            3

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=81.65  E-value=9.1  Score=40.54  Aligned_cols=113  Identities=19%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHH--HHHHHHHHhhhccccCCCCcccCEEEEe-CCC-C--C
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQ--AIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-A--A  155 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~r--a~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~--~  155 (370)
                      |.++++...+=-..++.|.|++++. -+++++... +....  .+..+.. +.        ..++|++++. ..+ .  .
T Consensus       395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~G-DG~f~~~g~~eL~t-av--------~~~~~i~~vVlnN~~~g~~  464 (595)
T TIGR03336       395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFIG-DSTFFHTGIPGLIN-AV--------YNKANITVVILDNRITAMT  464 (595)
T ss_pred             CccccceeeccCchHHHHhhhhhcCCCCCEEEEec-cchhhhcCHHHHHH-HH--------HcCCCeEEEEEcCcceecc
Confidence            5566665322233445677777653 567777654 44332  2344433 33        2577877765 222 1  1


Q ss_pred             CCC-----CCc------chHHHHHHHc--cCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          156 AGV-----GAQ------HSHCYAAWYA--SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       156 ~~~-----G~t------Hs~~~~a~~~--~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                      ++.     +.+      +..++.++.+  .+....|..|.+.+|+...++++++.++|.+|..
T Consensus       465 ~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v  527 (595)
T TIGR03336       465 GHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA  527 (595)
T ss_pred             CCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence            110     100      1122334444  3667788888888999999999999999998854

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=81.49  E-value=12  Score=39.21  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.+|++.|-  +--..++.|.|++++. -++++.+.. ..|.+.+-+  ...++        ..++|++++. ..|..+ 
T Consensus       402 p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~e--L~ta~--------~~~l~~~~vv~NN~~~~~  471 (558)
T TIGR00118       402 PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQE--LSTAV--------QYDIPVKILILNNRYLGM  471 (558)
T ss_pred             CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHH--HHHHH--------HhCCCeEEEEEeCCchHH
Confidence            788998753  2334667888887773 355555544 223332222  22344        3678877765 333211 


Q ss_pred             ---------CC---CCc-chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          157 ---------GV---GAQ-HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       157 ---------~~---G~t-Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                               +.   ... +...+ ..+...+ |+.-+.-.+++|+...+..+++.++|++|-
T Consensus       472 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie  532 (558)
T TIGR00118       472 VRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLLD  532 (558)
T ss_pred             HHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence                     10   111 11222 3444444 666778888999999999999999999984

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=81.46  E-value=8.1  Score=29.26  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513          240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF  300 (370)
Q Consensus       240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~  300 (370)
                      ++.|++.+. ....|++.++.|+.+|+++.+ |.+. +.+....-...-.+...++++.+..
T Consensus         3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcch
Confidence            566777764 567899999999999999977 4443 4554442222233455677777654

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=80.67  E-value=4.1  Score=29.96  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=42.3

Q ss_pred             cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCChHHH
Q 017513          240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAE  308 (370)
Q Consensus       240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GGlg~~  308 (370)
                      +++|.+. +....+.+|.+.|++.|++.+.+|+..-.+ ..+.+.+..... -+.|++... ..||+.+.
T Consensus         2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~-~iGg~~~~   68 (73)
T cd03027           2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEK-LVGGLTDL   68 (73)
T ss_pred             EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence            3555554 455778889999999999999999875322 223344443332 256666654 56887653

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=80.62  E-value=13  Score=38.91  Aligned_cols=112  Identities=19%  Similarity=0.169  Sum_probs=66.4

Q ss_pred             CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-  156 (370)
Q Consensus        83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-  156 (370)
                      |.+|++.+-  +=-..++.|.|++++- -+++++... ..|.+-..| + ..+.        ..++|++++. ..|..+ 
T Consensus       404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~e-L-~Ta~--------~~~l~i~~vV~NN~~y~~  473 (561)
T PRK06048        404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQE-L-ATAV--------QNDIPVIVAILNNGYLGM  473 (561)
T ss_pred             CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHH-H-HHHH--------HcCCCeEEEEEECCccHH
Confidence            778997542  3344677888888873 366666654 223332222 2 3343        3577877665 333211 


Q ss_pred             ---------C---CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       157 ---------~---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                               +   .+..  +..++.++-+.+ |..-..-.+..|+...+..++..++|++|-.
T Consensus       474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~liev  535 (561)
T PRK06048        474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVIDF  535 (561)
T ss_pred             HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence                     0   0110  112223444444 6677888999999999999999999999843

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=80.34  E-value=9.5  Score=40.17  Aligned_cols=109  Identities=21%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCcEeechhhHHHH----HHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCC
Q 017513           83 PERVLDTPITEAGF----TGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA  155 (370)
Q Consensus        83 p~r~~~~GIaE~~~----v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~  155 (370)
                      |.+|+..+-  ...    +..|.|++++- -++++++.. ..|.+-+ ..+ ..++        ..++|++++. ..+..
T Consensus       398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~-~el-~Ta~--------~~~lpv~~vV~NN~~~  465 (578)
T PRK06546        398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLL-GEL-LTVK--------LYDLPVKVVVFNNSTL  465 (578)
T ss_pred             CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhH-HHH-HHHH--------HhCCCeEEEEEECCcc
Confidence            567776432  233    34778877763 345555544 2333322 222 3444        3678887775 22221


Q ss_pred             CC-------CC-Cc-----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          156 AG-------VG-AQ-----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       156 ~~-------~G-~t-----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      +-       .| ..     +..++..+-.++ |..-..-.+++|+..+++++++.++|++|-
T Consensus       466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe  526 (578)
T PRK06546        466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD  526 (578)
T ss_pred             ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            10       11 11     111223344443 455666789999999999999999999984

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=80.31  E-value=14  Score=38.84  Aligned_cols=147  Identities=18%  Similarity=0.284  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccCCeeEEEccc-chH
Q 017513           43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMT-FNF  119 (370)
Q Consensus        43 ~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G~rp~~~t~~-~~f  119 (370)
                      +.+.|.+.+...++.++++ |.+   .+......+..-..|.+|++.+-  +=-..+..|.|++++--++++.+.. ..|
T Consensus       378 ~~~~l~~~l~~~~d~iv~~-~~~---~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~f  453 (569)
T PRK09259        378 ALGAIRDVLKENPDIYLVN-EGA---NTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSAF  453 (569)
T ss_pred             HHHHHHHHhCCCCCEEEEe-Cch---HHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCccc
Confidence            4456666665444666554 322   11111111222222788887642  1112566777877775566666654 222


Q ss_pred             HHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-C------C-C---CCcc--hHHHHHHHccCCCcEEEeeCCH
Q 017513          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-A------G-V---GAQH--SHCYAAWYASVPGLKVLSPYSS  184 (370)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-~------~-~---G~tH--s~~~~a~~~~iP~~~V~~P~d~  184 (370)
                      .+-.-|  ...++        ..++|++++. . +|.. .      + .   +...  ..++.++-+++ |..-+.-.++
T Consensus       454 ~m~~~E--L~Ta~--------r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~  522 (569)
T PRK09259        454 GFSGME--VETIC--------RYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTP  522 (569)
T ss_pred             cccHHH--HHHHH--------HcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence            222222  23444        3678887775 3 3320 0      0 0   1111  11223344444 5667777999


Q ss_pred             HHHHHHHHHHHhCCCCEEEE
Q 017513          185 EDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       185 ~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      .|+...+++++..++|++|-
T Consensus       523 ~el~~al~~a~~~~~p~lIe  542 (569)
T PRK09259        523 DELRHALTEAIASGKPTLIN  542 (569)
T ss_pred             HHHHHHHHHHHhCCCCEEEE
Confidence            99999999999999999984

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=80.22  E-value=16  Score=32.76  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcc----C-CeeEEEcccchHH-H--HHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH
Q 017513           94 AGFTGIGVGAAYY----G-LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH  164 (370)
Q Consensus        94 ~~~v~~A~GlA~~----G-~rp~~~t~~~~f~-~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~  164 (370)
                      -+.+++|+|+|++    | -+.+++... +.. +  ..++.+. .++.        ...|++++.. .+.. -++++.. 
T Consensus        78 G~gl~~A~G~Ala~k~~~~~~~vv~~~G-DG~~~eG~~~Eal~-~A~~--------~~~~li~vvdnN~~~-~~~~~~~-  145 (195)
T cd02007          78 STSISAALGMAVARDLKGKKRKVIAVIG-DGALTGGMAFEALN-NAGY--------LKSNMIVILNDNEMS-ISPNVGT-  145 (195)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCeEEEEEc-ccccccChHHHHHH-HHHH--------hCCCEEEEEECCCcc-cCCCCCC-
Confidence            3455667777765    2 234444433 433 2  4455553 3442        4678888764 3322 2222221 


Q ss_pred             HHHHHHccCCCcEE---EeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          165 CYAAWYASVPGLKV---LSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       165 ~~~a~~~~iP~~~V---~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                       ....++.. |+.+   +...|.+++...++.+.+.++|++|..
T Consensus       146 -~~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~  187 (195)
T cd02007         146 -PGNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV  187 (195)
T ss_pred             -HHHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence             22344442 3333   466688999999988887788999853

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	370
2ozl_B	341	Human Pyruvate Dehydrogenase S264e Variant Length =		1e-119
3exe_B	329	Crystal Structure Of The Pyruvate Dehydrogenase (E1		1e-119
1ni4_B	341	Human Pyruvate Dehydrogenase Length = 341		1e-108
1um9_B	324	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		2e-67
1w85_B	324	The Crystal Structure Of Pyruvate Dehydrogenase E1		8e-66
3duf_B	325	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		9e-66
1ik6_A	369	3d Structure Of The E1beta Subunit Of Pyruvate Dehy		1e-60
2bp7_B	339	New Crystal Form Of The Pseudomonas Putida Branched		1e-56
1qs0_B	338	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		6e-56
1dtw_B	342	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		2e-48
2j9f_B	350	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		2e-48
1olx_B	342	Roles Of His291-alpha And His146-beta' In The Reduc		3e-47
2o1x_A	629	1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From		2e-11
3ooy_A	616	Crystal Structure Of Human Transketolase (Tkt) Leng		5e-10
3mos_A	616	The Structure Of Human Transketolase Length = 616		6e-10
2o1s_A	621	1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From		7e-07

>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341

Iteration: 1
 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/325 (61%), Positives = 253/325 (77%), Gaps = 1/325 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
           RP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVP
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 313
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
           MPYA  LE  ++PQV+DI+ A K+ 
Sbjct: 314 MPYAKILEDNSIPQVKDIIFAIKKT 338

>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/325 (61%), Positives = 253/325 (77%), Gaps = 1/325 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 2   QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 61
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 62  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 241
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
           RP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVP
Sbjct: 242 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 301
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
           MPYA  LE  ++PQV+DI+ A K+ 
Sbjct: 302 MPYAKILEDNSIPQVKDIIFAIKKT 326

>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341

Iteration: 1
 Score =  386 bits (992), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/325 (60%), Positives = 244/325 (75%), Gaps = 1/325 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N   DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EF TFNFS QAID +INSAAK+ Y S G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
           RP D  TI ASV KTN LVTVE G+PQ GVGAEICA + E  +F +LDAP  R+ GADVP
Sbjct: 254 RPXDXETIEASVXKTNHLVTVEGGWPQFGVGAEICARIXEGPAFNFLDAPAVRVTGADVP 313
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
            PYA  LE  ++PQV+DI+ A K+ 
Sbjct: 314 XPYAKILEDNSIPQVKDIIFAIKKT 338

>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324

Iteration: 1
 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/325 (43%), Positives = 203/325 (62%), Gaps = 7/325 (2%)
Query: 37  MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96
           M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA  
Sbjct: 4   MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 97  TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
            G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G   
Sbjct: 64  VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123
Query: 157 GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV 216
             G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     V
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRS---V 180
Query: 217 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR 276
             EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ 
Sbjct: 181 KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLM 240
Query: 277 PLDRSTINASVRKTNRLVTVEEGFPQHG-VGAEICASVIEESFGYLDAPVERIAGADVPM 335
           P D   +  SV KT R+V V +  P+H    +E+ A++ E+    L AP  R+ G D P 
Sbjct: 241 PWDYEAVMNSVAKTGRVVLVSDA-PRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPY 299
Query: 336 PYAANLERMAVPQVEDIVRAAKRAC 360
           PYA +  ++ +P V  I+ AAKRA 
Sbjct: 300 PYAQD--KLYLPTVTRILNAAKRAL 322

>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324

Iteration: 1
 Score =  247 bits (630), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 4/323 (1%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 179
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 180 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
           +PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVY 298
Query: 336 PYAANLERMAVPQVEDIVRAAKR 358
           P+ A  E + +P  +D++  AK+
Sbjct: 299 PF-AQAESVWLPNFKDVIETAKK 320

>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325

Iteration: 1
 Score =  247 bits (630), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 4/323 (1%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 3   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 63  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 122
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 180
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 181 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 239
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
           +PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   
Sbjct: 240 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVY 299
Query: 336 PYAANLERMAVPQVEDIVRAAKR 358
           P+ A  E + +P  +D++  AK+
Sbjct: 300 PF-AQAESVWLPNFKDVIETAKK 321

>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369

Iteration: 1
 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 188/316 (59%), Gaps = 9/316 (2%)
Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP+ E G  G  
Sbjct: 55  KAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFA 114
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R P G+    G 
Sbjct: 115 MGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL 174
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEV 220
            HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY        EV
Sbjct: 175 YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAP---REEV 231
Query: 221 LDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280
            +  + + IGKA++ REG DVT+  +  +V  +L+AAE   +   S EV++L+++ PLD 
Sbjct: 232 PEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVVDLQTLNPLDF 288
Query: 281 STINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM-PYAA 339
            T+  SV KT RL+   +     G+GAE+ A V E++   L APV R+AG DVP  P AA
Sbjct: 289 DTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAA 348
Query: 340 NLERMAVPQVEDIVRA 355
           +      P VE I++A
Sbjct: 349 DAAY--APTVERIIKA 362

>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339

Iteration: 1
 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 177/319 (55%), Gaps = 16/319 (5%)
Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 2   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 61
Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 62  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 121
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 122 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 181
Query: 213 SF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
            F      PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE 
Sbjct: 182 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 240
Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFG 319
             + G+ AEVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+ + V E  F 
Sbjct: 241 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFH 298
Query: 320 YLDAPVERIAGADVPMPYA 338
           +L+AP+ER+ G D P P+A
Sbjct: 299 HLEAPIERVTGWDTPYPHA 317

>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338

Iteration: 1
 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 16/311 (5%)
Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +AL SA D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+E+G  G  
Sbjct: 9   QALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P G     G 
Sbjct: 69  VGXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQ 128
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------ 214
            HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY   F      
Sbjct: 129 THSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDR 188
Query: 215 PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISA 267
           PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE   + G+ A
Sbjct: 189 PVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDA 245
Query: 268 EVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVER 327
           EVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+ + V E  F +L+AP+ER
Sbjct: 246 EVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIER 305
Query: 328 IAGADVPMPYA 338
           + G D P P+A
Sbjct: 306 VTGWDTPYPHA 316

>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 9/313 (2%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
           + R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319

>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 9/313 (2%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
           + R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319

>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 9/313 (2%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G         S    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
           + R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319

>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 30/276 (10%)
Query: 42  ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101
           A   A+ E    DP+ F++   + E  G  + S+       P R LD  I E        
Sbjct: 327 AFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSR-----VHPHRYLDVGIAEEVAVTTAA 381
Query: 102 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161
           G A  G++PVV   +  F  +A D +++  A  +      ++  I   G  GA    GA 
Sbjct: 382 GMALQGMRPVVAIYS-TFLQRAYDQVLHDVAIEHL----NVTFCIDRAGIVGAD---GAT 433
Query: 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV--SA 218
           H+  +  ++  S+PG+++  P  + + RG+LK A     P         +   +P   +A
Sbjct: 434 HNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP---------FAIRYPRGNTA 484
Query: 219 EVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP 277
           +V   ++  L  G+ +  + G DV I A  K +  +LKAAE L   G    V+N R ++P
Sbjct: 485 QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKP 540
Query: 278 LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313
           LD   +     +   L+TVE+     G G  +  ++
Sbjct: 541 LDEEMLREVGGRARALITVEDNTVVGGFGGAVLEAL 576

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 346 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 404
Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N    G    V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 405 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 456
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 457 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 509
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIC 310
            +L AAE+L KE I+  V++  +I+PLDR  I  S R T  R++TVE+ + + G+G  + 
Sbjct: 510 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 569
Query: 311 ASVIEE 316
           ++V+ E
Sbjct: 570 SAVVGE 575

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 348 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 406
Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N    G    V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 407 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 458
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 459 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 511
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIC 310
            +L AAE+L KE I+  V++  +I+PLDR  I  S R T  R++TVE+ + + G+G  + 
Sbjct: 512 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 571
Query: 311 ASVIEE 316
           ++V+ E
Sbjct: 572 SAVVGE 577

>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 27/232 (11%)
Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P+R  D  I E        G A  G KP+V   +  F  +A D +++  A          
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYS-TFLQRAYDQVLHDVAIQK------- 411
Query: 143 SVPIVFRGPNGAAAGVGAQ-HSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIR---D 197
            +P++F        G   Q H   +   Y   +P   + +P    + R  L         
Sbjct: 412 -LPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDG 470
Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
           P  V +     +  E  P+          LPIGK  ++R G+ + I  F  +   + K A
Sbjct: 471 PSAVRYPRGNAVGVELTPLEK--------LPIGKGIVKRRGEKLAILNFGTLXPEAAKVA 522
Query: 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           E L     +A +++ R ++PLD + I         LVTVEE     G G+ +
Sbjct: 523 ESL-----NATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGV 569

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	0.0
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	1e-163
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	1e-160
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	1e-151
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	1e-145
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	1e-140
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	5e-20
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	3e-18
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341

 Score =  593 bits (1532), Expect = 0.0
 Identities = 201/338 (59%), Positives = 256/338 (75%), Gaps = 1/338 (0%)

Query: 25  SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
            +  ++     Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3   GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62

Query: 85  RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
           R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   V
Sbjct: 63  RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122

Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
           PIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182

Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
           ENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242

Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDA 323
           +  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDA
Sbjct: 243 VECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDA 302

Query: 324 PVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 361
           P  R+ GADVPMPYA  LE  ++PQV+DI+ A K+   
Sbjct: 303 PAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLN 340

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324

 Score =  459 bits (1183), Expect = e-163
 Identities = 133/324 (41%), Positives = 190/324 (58%), Gaps = 4/324 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY     
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 179 FRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
           +PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVY 298

Query: 336 PYAANLERMAVPQVEDIVRAAKRA 359
           P+ A  E + +P  +D++  AK+ 
Sbjct: 299 PF-AQAESVWLPNFKDVIETAKKV 321

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324

 Score =  451 bits (1163), Expect = e-160
 Identities = 137/324 (42%), Positives = 199/324 (61%), Gaps = 5/324 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA 
Sbjct: 3   LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 62

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G  
Sbjct: 63  IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 122

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
              G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVK- 181

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++
Sbjct: 182 --EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTL 239

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
            P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P 
Sbjct: 240 MPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPY 299

Query: 336 PYAANLERMAVPQVEDIVRAAKRA 359
           PYA   +++ +P V  I+ AAKRA
Sbjct: 300 PYA--QDKLYLPTVTRILNAAKRA 321

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369

 Score =  430 bits (1107), Expect = e-151
 Identities = 131/329 (39%), Positives = 190/329 (57%), Gaps = 7/329 (2%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           +  V    + +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP
Sbjct: 45  AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 104

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           + E G  G  +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R 
Sbjct: 105 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 164

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           P G+    G  HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY
Sbjct: 165 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 224

Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
                   EV +  + + IGKA++ REG DVT+  +  +V  +L+AAE   +   S EV+
Sbjct: 225 RAPR---EEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVV 278

Query: 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG 330
           +L+++ PLD  T+  SV KT RL+   +     G+GAE+ A V E++   L APV R+AG
Sbjct: 279 DLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAG 338

Query: 331 ADVPMPYAANLERMAVPQVEDIVRAAKRA 359
            DVP    A  +    P VE I++A +  
Sbjct: 339 PDVPQSPIA-ADAAYAPTVERIIKAIEYV 366

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338

 Score =  412 bits (1062), Expect = e-145
 Identities = 126/340 (37%), Positives = 180/340 (52%), Gaps = 18/340 (5%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180

Query: 213 SFPVS-------------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
            F                + V D  + +P+ KA I R G DV++  +   V ++  AAE 
Sbjct: 181 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 239

Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFG 319
             + G+ AEVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+ + V E  F 
Sbjct: 240 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFH 297

Query: 320 YLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 359
           +L+AP+ER+ G D P P+A   E    P    +  A K+ 
Sbjct: 298 HLEAPIERVTGWDTPYPHA--QEWAYFPGPSRVGAALKKV 335

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342

 Score =  401 bits (1034), Expect = e-140
 Identities = 111/331 (33%), Positives = 173/331 (52%), Gaps = 8/331 (2%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
               ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP
Sbjct: 15  YGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTP 73

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFR 149
           + E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R
Sbjct: 74  LCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR 133

Query: 150 GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELL 209
            P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++L
Sbjct: 134 SPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKIL 193

Query: 210 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-KEGISAE 268
           Y  +     EV    + +P+ +A++ +EG DVT+ A+   V +  + A +   K G+S E
Sbjct: 194 YRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 250

Query: 269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI 328
           VI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+
Sbjct: 251 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV 310

Query: 329 AGADVPMPYAANLERMAVPQVEDIVRAAKRA 359
            G D P P+    E   +P       A ++ 
Sbjct: 311 CGYDTPFPHI--FEPFYIPDKWKCYDALRKM 339

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629

 Score = 90.6 bits (226), Expect = 5e-20
 Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 50/262 (19%)

Query: 83  PERVLDTPITE---AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYM 137
           P R LD  I E           G A  G++PVV  + TF   +Q A D +++  A  +  
Sbjct: 363 PHRYLDVGIAEEVAVTTAA---GMALQGMRPVVAIYSTF---LQRAYDQVLHDVAIEH-- 414

Query: 138 SSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189
                 + + F   R      AG+    GA H+  +  ++  S+PG+++  P  + + RG
Sbjct: 415 ------LNVTFCIDR------AGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRG 462

Query: 190 LLKAAIRDPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFS 247
           +LK A     P         Y  G +  V A        L  G+ +  + G DV I A  
Sbjct: 463 MLKYAQTHDGPFAIR-----YPRGNTAQVPAGTWPD---LKWGEWERLKGGDDVVILAGG 514

Query: 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA 307
           K +  +LKAAE L   G    V+N R ++PLD   +     +   L+TVE+     G G 
Sbjct: 515 KALDYALKAAEDLPGVG----VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGG 570

Query: 308 EICASVIEESFGYLDAPVERIA 329
            +  ++   +   L   V  + 
Sbjct: 571 AVLEALNSMN---LHPTVRVLG 589

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 60/267 (22%)

Query: 83  PERVLDTPITE-------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAK 133
           P+R  D  I E       AG        A  G KP+V  + TF   +Q A D +++  A 
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGL-------AIGGYKPIVAIYSTF---LQRAYDQVLHDVAI 409

Query: 134 SNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSE 185
                     +P++F   R      AG+    G  H   +  ++   +P + +++P    
Sbjct: 410 QK--------LPVLFAIDR------AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDEN 455

Query: 186 DARGLLKAAIR-DPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVT 242
           + R +L      +  P         Y  G +  V    L+    LPIGK  ++R G+ + 
Sbjct: 456 ECRQMLYTGYHYNDGPSAVR-----YPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLA 507

Query: 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ 302
           I  F  ++  + K AE      ++A ++++R ++PLD + I         LVTVEE    
Sbjct: 508 ILNFGTLMPEAAKVAE-----SLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIM 562

Query: 303 HGVGAEICASVIEESFGYLDAPVERIA 329
            G G+ +   ++         PV  I 
Sbjct: 563 GGAGSGVNEVLMAHR---KPVPVLNIG 586

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL----ENELLYGESFPVSAEVLDSSFCL 227
           SVP   V  P         ++ A              EN ++Y  +              
Sbjct: 437 SVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNED-----------F 485

Query: 228 PIGKAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINA 285
            +G+AK+  + K   VT+      +  +L AAE+L KE I+  V++  +I+PLDR  I  
Sbjct: 486 QVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILD 545

Query: 286 SVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM--PYAANLE 342
           S R T  R++TVE+ + + G+G  + ++V+    G     V  +A   VP     A  L+
Sbjct: 546 SARATKGRILTVEDHYYEGGIGEAVSSAVV----GEPGITVTHLAVNRVPRSGKPAELLK 601

Query: 343 RMAVPQVEDIVRAAK 357
              +   + I +A +
Sbjct: 602 MFGI-DRDAIAQAVR 615

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 64/409 (15%), Positives = 114/409 (27%), Gaps = 127/409 (31%)

Query: 14  GSPVARIRPVVSNLRNYSSAVKQMMVREALN-------SALDEE---------------- 50
              V+    +   L +    + Q  V E L        S +  E                
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 51  -MSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIG----VGAA 104
            +  D +VF     V   Q   K+ + LLE +     ++D      G  G G        
Sbjct: 118 RLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKTWVALDV 170

Query: 105 Y--YGLKPVVEFMTF--NFS-----------MQAIDHIINSAAKSNYMSSGQISVPIVFR 149
              Y ++  ++F  F  N             +Q + + I+     N+ S    S  I  R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLR 226

Query: 150 GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDP--DPVVFLENE 207
                       HS       A +  L    PY       LL   +     +   +    
Sbjct: 227 -----------IHS-----IQAELRRLLKSKPY----ENCLL---VLLNVQNAKAW---- 259

Query: 208 LLYGESFPVSAEVL----DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL-KAAEILAK 262
                +F +S ++L           +           +++   S    L+  +   +L K
Sbjct: 260 ----NAFNLSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLK 309

Query: 263 ------EGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASVIE 315
                 + +  EV    +  P   S I  S+R          + +    V  +   ++IE
Sbjct: 310 YLDCRPQDLPREV---LTTNPRRLSIIAESIRDGLATW----DNWKH--VNCDKLTTIIE 360

Query: 316 ESFGYLDAPVER-------IAGADVPMPYAANLER----MAVPQVEDIV 353
            S   L+    R       +      +P    L      +    V  +V
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 52/401 (12%), Positives = 100/401 (24%), Gaps = 127/401 (31%)

Query: 60  MGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119
           M  E GE+Q  YK    +L  +    V +                 +  K V +      
Sbjct: 7   MDFETGEHQYQYK---DILSVFEDAFVDN-----------------FDCKDVQDMPKSIL 46

Query: 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV------ 173
           S + IDHII S  K     + ++   ++ +        V       Y  +  S       
Sbjct: 47  SKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQR 103

Query: 174 -PGLKVLSPYSSE------DARGLLKAAIRDPDPVVFLENEL----------LY-----G 211
            P +     Y  +      D +   K  +    P + L   L          +      G
Sbjct: 104 QPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 212 ESFPVSAEVLDSS----------FCLPIGKAKIERE------------------GKDVTI 243
           +++ V+ +V  S           F L +                            D + 
Sbjct: 163 KTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 244 TAFSKIVGLSLKAAEILAKEG------ISAEVINLRSIRPLDRS------TINASV---- 287
               +I  +  +   +L  +       +   V N ++    + S      T    V    
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 288 ----RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP---YAA- 339
                    L               +    ++     L  P E +     P      A  
Sbjct: 282 SAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDL--PREVLTTN--PRRLSIIAES 336

Query: 340 ---------NLERMAVPQVEDIVRAA--------KRACYRS 363
                    N + +   ++  I+ ++         R  +  
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	100.0
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	100.0
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	100.0
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	100.0
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	100.0
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	100.0
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	100.0
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	100.0
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	100.0
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	100.0
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	100.0
3l84_A	632	Transketolase; TKT, structural genomics, center fo	100.0
3uk1_A	711	Transketolase; structural genomics, seattle struct	100.0
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	100.0
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	100.0
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	100.0
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	100.0
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	100.0
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	100.0
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	100.0
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	100.0
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	99.95
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.86
3ju3_A	118	Probable 2-oxoacid ferredoxin oxidoreductase, ALP;	99.7
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	94.42
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	94.36
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	94.25
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	93.56
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	93.47
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	93.11
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	92.39
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	92.27
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	92.23
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	91.76
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	91.38
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	91.25
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	89.76
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	89.16
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	89.01
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	88.87
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	87.54
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	86.99
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	85.36
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	85.19
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	84.47
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	84.25
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	84.07
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	83.23

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=100.00  E-value=1.8e-68  Score=519.60  Aligned_cols=329  Identities=61%  Similarity=1.021  Sum_probs=298.2

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEE
Q 017513           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (370)
Q Consensus        33 ~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~  112 (370)
                      +.++++++++|+++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+
T Consensus        11 ~~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~   90 (341)
T 2ozl_B           11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPIC   90 (341)
T ss_dssp             -CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CcccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEE
Confidence            45678999999999999999999999999999876777777788999998999999999999999999999999999999


Q ss_pred             EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017513          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (370)
Q Consensus       113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (370)
                      ++++++|++|++|||++++|+++||++|++++||+++.+.|..+++|+||+|.++++|+++|||+|++|+|++|++.+++
T Consensus        91 ~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~  170 (341)
T 2ozl_B           91 EFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIK  170 (341)
T ss_dssp             ECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred             EeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHH
Confidence            95456899999999999999999999999999999998767677799999887779999999999999999999999999


Q ss_pred             HHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513          193 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (370)
Q Consensus       193 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~  272 (370)
                      +|+++++|++||+++.+|+...++.+.+++.++.+++|+++++++|.|++||+||+++..|++|++.|+++|++++|||+
T Consensus       171 ~a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~  250 (341)
T 2ozl_B          171 SAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINM  250 (341)
T ss_dssp             HHHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             HHHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEee
Confidence            99999999999999887653211111224456678899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh-hccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHH
Q 017513          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVED  351 (370)
Q Consensus       273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~-~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~  351 (370)
                      ++++|||.+.|+++++++++++++||+...|||+++|++.+.+ +++..++.|+.++|++|.|++++..+++.+++|+++
T Consensus       251 ~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~  330 (341)
T 2ozl_B          251 RTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKD  330 (341)
T ss_dssp             CEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHH
T ss_pred             eeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHH
Confidence            9999999999999999999999999999899999999999998 776556789999999999999877888999999999


Q ss_pred             HHHHHHHHHh
Q 017513          352 IVRAAKRACY  361 (370)
Q Consensus       352 I~~~i~~~l~  361 (370)
                      |+++|+++++
T Consensus       331 I~~~i~~~l~  340 (341)
T 2ozl_B          331 IIFAIKKTLN  340 (341)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*

Probab=100.00  E-value=6.8e-68  Score=512.79  Aligned_cols=322  Identities=41%  Similarity=0.684  Sum_probs=294.7

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ++++|++|+++|.+++++|++++++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||++++
T Consensus         2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t   81 (324)
T 1w85_B            2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (324)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence            35799999999999999999999999999977888887889999998999999999999999999999999999999843


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (370)
                      ++.|++|++|||++++|+++||++|++++|+|++.+.|..+++|+||++.++++++++|||+|++|+|++|++.++++|+
T Consensus        82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~  161 (324)
T 1w85_B           82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI  161 (324)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHH
Confidence            45888999999999999999999999999999997545566678899888889999999999999999999999999999


Q ss_pred             hCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc
Q 017513          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI  275 (370)
Q Consensus       196 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l  275 (370)
                      ++++|++||+|+.+++..   .+.++++++.+++||++++++|.|++|||||++++.|++|++.|+++|++++|||++++
T Consensus       162 ~~~~Pv~i~~p~~l~r~~---~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l  238 (324)
T 1w85_B          162 RDNDPVIFLEHLKLYRSF---RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV  238 (324)
T ss_dssp             HSSSCEEEEEETTTSSSC---CEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred             HcCCCEEEEechHhcCCC---CCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence            999999999998887642   12344456678899999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHH
Q 017513          276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA  355 (370)
Q Consensus       276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~  355 (370)
                      +|||.+.|+++++++++++++|||+..|||+++|++.+.++++..++.|+.++|.+|.|++++. |++++|+|+++|+++
T Consensus       239 ~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~-l~~~~gl~~~~I~~~  317 (324)
T 1w85_B          239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ-AESVWLPNFKDVIET  317 (324)
T ss_dssp             ESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG-GHHHHSCCHHHHHHH
T ss_pred             cCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH-HHHHhCcCHHHHHHH
Confidence            9999999999999999999999999889999999999998876556689999999999999877 889999999999999


Q ss_pred             HHHHHh
Q 017513          356 AKRACY  361 (370)
Q Consensus       356 i~~~l~  361 (370)
                      |+++++
T Consensus       318 i~~~l~  323 (324)
T 1w85_B          318 AKKVMN  323 (324)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            999874

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*

Probab=100.00  E-value=3.4e-67  Score=507.91  Aligned_cols=322  Identities=43%  Similarity=0.699  Sum_probs=294.4

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      +.++||++++++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+++
T Consensus         2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~   81 (324)
T 1umd_B            2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEI   81 (324)
T ss_dssp             CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence            35689999999999999999999999999987788887788999999899999999999999999999999999999984


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                      +++.|++|++|||++++|+++|+++|++++|+|++.+.|..+++|+||++.++++|+++|||+|++|+|++|++.+++++
T Consensus        82 t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  161 (324)
T 1umd_B           82 QFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA  161 (324)
T ss_dssp             SSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence            34588899999999999999999999999999999854555667899988888999999999999999999999999999


Q ss_pred             HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017513          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (370)
Q Consensus       195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~  274 (370)
                      +++++|+++|+|+.+++..   .+.++++++.+++||++++++|.|++||++|++++.|++|++.|+++|++++|||+++
T Consensus       162 ~~~~~Pv~i~~p~~l~~~~---~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~  238 (324)
T 1umd_B          162 IRDEDPVVFLEPKRLYRSV---KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT  238 (324)
T ss_dssp             HHCSSCEEEEEEGGGSSSC---CEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred             HhcCCCEEEEechHhcCCC---CCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence            9999999999999887642   1234555667889999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017513          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR  354 (370)
Q Consensus       275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~  354 (370)
                      ++|||.+.|+++++++++++++|||...|||+++|++.+.++++..++.|+.++|.+|.|+++.  |++++++|+++|++
T Consensus       239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l~~~~g~~~~~I~~  316 (324)
T 1umd_B          239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKLYLPTVTRILN  316 (324)
T ss_dssp             EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--THHHHSCCHHHHHH
T ss_pred             ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH--HHHHhCcCHHHHHH
Confidence            9999999999999999999999999989999999999999887655678999999999999887  88889999999999


Q ss_pred             HHHHHHh
Q 017513          355 AAKRACY  361 (370)
Q Consensus       355 ~i~~~l~  361 (370)
                      +|+++++
T Consensus       317 ~i~~~l~  323 (324)
T 1umd_B          317 AAKRALD  323 (324)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999874

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...

Probab=100.00  E-value=1.1e-65  Score=500.46  Aligned_cols=329  Identities=35%  Similarity=0.596  Sum_probs=292.3

Q ss_pred             cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513           25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (370)
Q Consensus        25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA  104 (370)
                      .+++.|.. .++++||++++++|.+++++|++++++++|++ .+|+++.+.+|+++|+|+||||+||+|++|+++|+|+|
T Consensus        10 ~~~~~~~~-~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A   87 (342)
T 2bfd_B           10 PEPREYGQ-TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIA   87 (342)
T ss_dssp             ----CCSC-EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHH
T ss_pred             CCCCCCCc-cCCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHH
Confidence            45677754 67789999999999999999999999999998 56778778899999999999999999999999999999


Q ss_pred             ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEeCCCCCCCCCCcc-hHHHHHHHccCCCcEEEeeC
Q 017513          105 YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPY  182 (370)
Q Consensus       105 ~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~G~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~  182 (370)
                      ++|+|||+++++..|++|++|||++++|+++||++|+.++ ||+++.+.|.. ++|++| ++.|+++|+++|||+|++|+
T Consensus        88 ~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~~~~d~~~l~~iP~l~V~~Ps  166 (342)
T 2bfd_B           88 VTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYHSQSPEAFFAHCPGIKVVIPR  166 (342)
T ss_dssp             HTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGSSCCCHHHHHTSTTCEEECCS
T ss_pred             HCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchhhHhHHHHHhcCCCcEEEeeC
Confidence            9999999984345889999999999999999999999999 99999753322 456665 78889999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHh
Q 017513          183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAK  262 (370)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~  262 (370)
                      |++|++.++++|+++++|++||+|+.+++...   +.++.+++.+++|+++++++|.|++|||+|++++.|++|++.|++
T Consensus       167 d~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~  243 (342)
T 2bfd_B          167 SPFQAKGLLLSCIEDKNPCIFFEPKILYRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE  243 (342)
T ss_dssp             SHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCC---EEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEecchhcCCCC---CCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988876432   234445667889999999999999999999999999999999999


Q ss_pred             c-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHH
Q 017513          263 E-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANL  341 (370)
Q Consensus       263 ~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l  341 (370)
                      + |++++|||+++++|||.+.|++++++++++|++|||...|||+++|++.+.++++..++.|+.++|++|.|+++.  |
T Consensus       244 ~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l  321 (342)
T 2bfd_B          244 KLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--F  321 (342)
T ss_dssp             HHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--T
T ss_pred             hcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH--H
Confidence            9 999999999999999999999999999999999999889999999999999887655567899999999888875  8


Q ss_pred             HHHhCCCHHHHHHHHHHHHh
Q 017513          342 ERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       342 ~~~~gl~~~~I~~~i~~~l~  361 (370)
                      ++++|+|+++|+++|+++++
T Consensus       322 ~~~~gl~~~~I~~~i~~~l~  341 (342)
T 2bfd_B          322 EPFYIPDKWKCYDALRKMIN  341 (342)
T ss_dssp             HHHHSCCHHHHHHHHHHHHT
T ss_pred             HHHHCcCHHHHHHHHHHHhc
Confidence            88899999999999999874

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2

Probab=100.00  E-value=1.2e-65  Score=504.20  Aligned_cols=319  Identities=40%  Similarity=0.656  Sum_probs=254.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      +++++|++|+++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|||++|+|||+++
T Consensus        49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~  128 (369)
T 1ik6_A           49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI  128 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence            45789999999999999999999999999987778777788999999899999999999999999999999999999984


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      ++..|++|++|||++++|+++|+++|+.++||+++.+ +|.. ++|+||++.++++|+++|||+|++|+|++|++.++++
T Consensus       129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~-g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~  207 (369)
T 1ik6_A          129 QFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGT-RGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKA  207 (369)
T ss_dssp             CCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC------------HHHHHHTCTTCEEECCCSHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCC-CCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence            3447899999999999999999999999999999985 4533 4789998888999999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~  273 (370)
                      |++.++|++||+|+.+++..   .+.++.+++.+++|+++++++|.|++|||+|+++..|++|++.|+  | +++|||++
T Consensus       208 A~~~~~Pv~i~~p~~l~r~~---~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~  281 (369)
T 1ik6_A          208 AIRGDDPVVFLEPKILYRAP---REEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQ  281 (369)
T ss_dssp             HHHSSSCEEEEEEGGGSSCC---CEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECC
T ss_pred             HHhCCCCEEEEEehhhhccC---CCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeee
Confidence            99999999999999887642   123444566788999999999999999999999999999999996  8 99999999


Q ss_pred             cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV  353 (370)
Q Consensus       274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~  353 (370)
                      |++|||.+.|++++++++++|++||+...|||+++|++.+.++++..++.|+.++|++|.|++++. |++.++||+++|+
T Consensus       282 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-l~~~~gl~~~~I~  360 (369)
T 1ik6_A          282 TLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADAAYAPTVERII  360 (369)
T ss_dssp             EEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------------CHHHHH
T ss_pred             ecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH-HHHHhCcCHHHHH
Confidence            999999999999999999999999999899999999999998876556789999999999998877 8899999999999


Q ss_pred             HHHHHHHh
Q 017513          354 RAAKRACY  361 (370)
Q Consensus       354 ~~i~~~l~  361 (370)
                      ++|+++++
T Consensus       361 ~~i~~~l~  368 (369)
T 1ik6_A          361 KAIEYVMR  368 (369)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999874

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B

Probab=100.00  E-value=1.3e-63  Score=485.53  Aligned_cols=321  Identities=39%  Similarity=0.612  Sum_probs=286.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      ++++||++|+++|.+++++|++++++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+++
T Consensus         3 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~   82 (338)
T 1qs0_B            3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI   82 (338)
T ss_dssp             EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEe
Confidence            45789999999999999999999999999987788888788999999999999999999999999999999999999984


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      +++.|++|++|||++++|+++|+++|+.++||+++.+.|. +++|++| ++.|+++|+++|||+|++|+|++|+++++++
T Consensus        83 t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~  161 (338)
T 1qs0_B           83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA  161 (338)
T ss_dssp             SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence            3458889999999999999999999999999999985332 3566555 7888999999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCC---Ccc----------cccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHH
Q 017513          194 AIRDPDPVVFLENELLYGESFP---VSA----------EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL  260 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~---~~~----------~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L  260 (370)
                      |+++++|++||+|+.+++...+   ..+          .++..++.+++|+++++++|.|++|||+|++++.|++|++. 
T Consensus       162 A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~-  240 (338)
T 1qs0_B          162 SIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE-  240 (338)
T ss_dssp             HHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH-
T ss_pred             HHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH-
Confidence            9999999999999877765322   000          34444566789999999999999999999999999999997 


Q ss_pred             HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHH
Q 017513          261 AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAAN  340 (370)
Q Consensus       261 ~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~  340 (370)
                        +|++++|||++|++|||.+.|+++++++++++++|||...|||+++|++.+.++++..++.++.++|.+|.|.++.  
T Consensus       241 --~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~--  316 (338)
T 1qs0_B          241 --SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA--  316 (338)
T ss_dssp             --HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST--
T ss_pred             --cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH--
Confidence              6999999999999999999999999999999999999989999999999999887655667899999999988876  


Q ss_pred             HHHHhCCCHHHHHHHHHHHHh
Q 017513          341 LERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       341 l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      |++.+++|+++|+++|+++++
T Consensus       317 l~~~~g~~~~~I~~~i~~~l~  337 (338)
T 1qs0_B          317 QEWAYFPGPSRVGAALKKVME  337 (338)
T ss_dssp             THHHHSCCHHHHHHHHHHSSC
T ss_pred             HHHHHCCCHHHHHHHHHHHhc
Confidence            888899999999999998763

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=100.00  E-value=7.8e-56  Score=460.58  Aligned_cols=304  Identities=24%  Similarity=0.317  Sum_probs=266.0

Q ss_pred             CCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017513           26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY  105 (370)
Q Consensus        26 ~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~  105 (370)
                      .++.|.. ++++++|++|+++|.+++++||+++++++|++.  +++  +..|+++| |+||||+||+|++|+++|+|||+
T Consensus       303 ~~~~~~~-~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~--~~~--~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~  376 (616)
T 3mos_A          303 SLPSYKV-GDKIATRKAYGQALAKLGHASDRIIALDGDTKN--STF--SEIFKKEH-PDRFIECYIAEQNMVSIAVGCAT  376 (616)
T ss_dssp             SCCCCCT-TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHH--HHS--HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHG
T ss_pred             CCccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCC--Ccc--hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHH
Confidence            4678865 567899999999999999999999999999973  332  57899999 99999999999999999999999


Q ss_pred             cCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017513          106 YGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       106 ~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P  181 (370)
                      +|+ +|++.+|+ .|++|++|||++. ++        +++||+++. ++|. .|.+|+|| ++.++++|+++|||+|++|
T Consensus       377 ~G~~~~~~~~f~-~Fl~~a~dqi~~~-a~--------~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P  446 (616)
T 3mos_A          377 RNRTVPFCSTFA-AFFTRAFDQIRMA-AI--------SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYP  446 (616)
T ss_dssp             GGCCEEEEEEEG-GGGGGGHHHHHHH-HH--------TTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECC
T ss_pred             cCCCCEEEEehH-HHHHHHHHHHHHH-HH--------hCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEec
Confidence            997 79998876 7889999999986 42        678988887 4676 56689888 6778899999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCc--EEEEEechhHHHHHHHHHH
Q 017513          182 YSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD--VTITAFSKIVGLSLKAAEI  259 (370)
Q Consensus       182 ~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~d--v~Iia~G~~~~~al~Aa~~  259 (370)
                      +|++|+..+++++++.++|+++|.+|.    ..|   .+...+..+++|+++++++|.|  ++||++|++++.|++|++.
T Consensus       447 ~d~~e~~~~l~~a~~~~gp~~ir~~r~----~~p---~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~  519 (616)
T 3mos_A          447 SDGVATEKAVELAANTKGICFIRTSRP----ENA---IIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAEL  519 (616)
T ss_dssp             CSHHHHHHHHHHHHTCCSEEEEECCSS----CCB---CCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEeCC----CCC---ccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHH
Confidence            999999999999999999999987653    111   2233445678999999999876  9999999999999999999


Q ss_pred             HHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC-
Q 017513          260 LAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY-  337 (370)
Q Consensus       260 L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~-  337 (370)
                      |+++||+++|||+++++|||.++|.++++++ ++|||+|||+..||+|++|++.+.+++    +.++.++|+++ |..+ 
T Consensus       520 L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~g~~~-f~~~g  594 (616)
T 3mos_A          520 LKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHLAVNR-VPRSG  594 (616)
T ss_dssp             HHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEEEECS-CCCCS
T ss_pred             HHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEEeCCC-CCCCC
Confidence            9999999999999999999999999999999 899999999999999999999998754    46899999996 4443 


Q ss_pred             -HHHHHHHhCCCHHHHHHHHH
Q 017513          338 -AANLERMAVPQVEDIVRAAK  357 (370)
Q Consensus       338 -~~~l~~~~gl~~~~I~~~i~  357 (370)
                       .++|++.+|||+++|+++|+
T Consensus       595 ~~~~l~~~~gl~~~~I~~~i~  615 (616)
T 3mos_A          595 KPAELLKMFGIDRDAIAQAVR  615 (616)
T ss_dssp             CHHHHHHHTTCSHHHHHHHHT
T ss_pred             CHHHHHHHHCcCHHHHHHHHh
Confidence             46788889999999999886

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=100.00  E-value=3.1e-55  Score=458.19  Aligned_cols=299  Identities=24%  Similarity=0.289  Sum_probs=267.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..+|+++|+++|.+++++|++++++++|+....|    +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++|
T Consensus       321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~----~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~  395 (629)
T 2o1x_A          321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSG----LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIY  395 (629)
T ss_dssp             CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT----CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcC----hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEec
Confidence            5789999999999999999999999999974322    46899999 999999999999999999999999999999996


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      + .|++|++|||++++|+        +++||+++.. +|..+++|+||++ .++++||++|||+|++|+|++|++.++++
T Consensus       396 ~-~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~  466 (629)
T 2o1x_A          396 S-TFLQRAYDQVLHDVAI--------EHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY  466 (629)
T ss_dssp             H-HHHGGGHHHHHHTTTT--------TTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHhh--------cCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence            5 7899999999999984        7899999985 5667779999965 45799999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCCCccccc-CCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513          194 AIRDPDPVVFLENELLYGESFPVSAEVL-DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~-~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~  272 (370)
                      |++.++|++||++|..++.       ++ ++.+.+++|+++++++|.|++||++|+++..|++|++.|+    +++|||+
T Consensus       467 a~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~  535 (629)
T 2o1x_A          467 AQTHDGPFAIRYPRGNTAQ-------VPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNA  535 (629)
T ss_dssp             HHHSSSCEEEECCSSBCCC-------CCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEEC
T ss_pred             HHhCCCCEEEEecCCCCCC-------CcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEee
Confidence            9999999999988764321       11 2345678999999999999999999999999999999996    8999999


Q ss_pred             ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017513          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE  350 (370)
Q Consensus       273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~  350 (370)
                      +|++|||.+.+.+++++++++||+||++..||+|++|++.+.+++   ++.|+.++|++|.|+++  .++|++++|+|++
T Consensus       536 ~~~~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~  612 (629)
T 2o1x_A          536 RFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN---LHPTVRVLGIPDEFQEHATAESVHARAGIDAP  612 (629)
T ss_dssp             CEEESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT---CCCEEEEEEECSSCCCSCCHHHHHHHHTCSHH
T ss_pred             CCCCCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC---CCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHH
Confidence            999999999999999999999999999999999999999999876   35789999999999875  4678999999999


Q ss_pred             HHHHHHHHHHhc
Q 017513          351 DIVRAAKRACYR  362 (370)
Q Consensus       351 ~I~~~i~~~l~~  362 (370)
                      +|+++|++++..
T Consensus       613 ~I~~~i~~~~~~  624 (629)
T 2o1x_A          613 AIRTVLAELGVD  624 (629)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988743

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.3e-55  Score=455.94  Aligned_cols=299  Identities=21%  Similarity=0.301  Sum_probs=266.0

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      ...+|+++|+++|.+++++|++|+++++|+....   + +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++
T Consensus       317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~---~-~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~  391 (621)
T 2o1s_A          317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGS---G-MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI  391 (621)
T ss_dssp             -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---T-CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCc---C-hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence            3578999999999999999999999999997432   2 46899999 99999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (370)
                      |+ .|++|++||+++++|+        +++||+++.+ +|..+++|+||++ .++++|+++|||+|++|+|++|++.+++
T Consensus       392 ~~-~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~  462 (621)
T 2o1s_A          392 YS-TFLQRAYDQVLHDVAI--------QKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY  462 (621)
T ss_dssp             ET-TGGGGGHHHHHHTTTT--------TTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred             hH-hHHHHHHHHHHHHHHh--------cCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence            65 7889999999999884        7899999985 5666679999966 4579999999999999999999999999


Q ss_pred             HHHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEE
Q 017513          193 AAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (370)
Q Consensus       193 ~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~  271 (370)
                      +|++. ++|++||++|..++..     ..++. +.+++|+++++++|.|++|||+|++++.|++|     ++|++++|||
T Consensus       463 ~a~~~~~~Pv~i~~~r~~~~~~-----~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~  531 (621)
T 2o1s_A          463 TGYHYNDGPSAVRYPRGNAVGV-----ELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVD  531 (621)
T ss_dssp             HHHHCCSSCEEEECCSSBCCCC-----CCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEE
T ss_pred             HHHHcCCCCEEEEeCCCCCCCC-----CCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEe
Confidence            99998 8999999987654321     11222 56789999999999999999999999999999     5699999999


Q ss_pred             eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017513          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV  349 (370)
Q Consensus       272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~  349 (370)
                      ++|++|||.+.|.+++++++++|+|||+...|||+++|++.+.+++   ++.|+.++|++|.|+++  .++|++++|+|+
T Consensus       532 ~~~~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~  608 (621)
T 2o1s_A          532 MRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVPVLNIGLPDFFIPQGTQEEMRAELGLDA  608 (621)
T ss_dssp             CCEEESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT---CCCCEEEEEECSSCCCCSCHHHHHHHTTCSH
T ss_pred             cCccCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC---CCCCeEEEecCCcCCCCCCHHHHHHHHCcCH
Confidence            9999999999999999999999999999999999999999999876   35799999999999875  467999999999


Q ss_pred             HHHHHHHHHHHh
Q 017513          350 EDIVRAAKRACY  361 (370)
Q Consensus       350 ~~I~~~i~~~l~  361 (370)
                      ++|+++|+++++
T Consensus       609 ~~I~~~i~~~l~  620 (621)
T 2o1s_A          609 AGMEAKIKAWLA  620 (621)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999873

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.6e-51  Score=430.94  Aligned_cols=323  Identities=16%  Similarity=0.114  Sum_probs=261.9

Q ss_pred             hhcccCCCCcccccCCCC-----cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHH
Q 017513            7 QKVAAGGGSPVARIRPVV-----SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK   80 (370)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~   80 (370)
                      +.+|+.+.++.++..+..     ...+.|....+++++|++++++|.+++++||++|++++|++.+++++ +.+.+|+++
T Consensus       340 ~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~  419 (700)
T 3rim_A          340 RREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPP  419 (700)
T ss_dssp             HHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCG
T ss_pred             hhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhccc
Confidence            345555555555554322     23467766567899999999999999999999999999998666652 335678888


Q ss_pred             h-----CC----CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe
Q 017513           81 Y-----GP----ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG  150 (370)
Q Consensus        81 ~-----~p----~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~  150 (370)
                      |     +|    +||||+||+||+|+++|+|||++ |+|||++||+ .|+.++.+|||. .|+        +++||+++.
T Consensus       420 ~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~-~F~d~~~~~ir~-~al--------~~lpvv~v~  489 (700)
T 3rim_A          420 SISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFL-QFSDYMRPAVRL-AAL--------MDIDTIYVW  489 (700)
T ss_dssp             GGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEG-GGGGGGHHHHHH-HHH--------HTCCCEEEE
T ss_pred             ccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecH-HHHHHHHHHHHH-hcC--------CCCCEEEEE
Confidence            7     36    69999999999999999999999 9999999976 788888899986 663        789999998


Q ss_pred             C-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCC---CCEEEEecccccCCCCCCcccccCC-
Q 017513          151 P-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDP---DPVVFLENELLYGESFPVSAEVLDS-  223 (370)
Q Consensus       151 ~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~---~Pv~i~~~~~l~~~~~~~~~~~~~~-  223 (370)
                      . +|. .|.+|+|| +.+++++||++|||+|++|+|++|++.++++|++++   +|++||++|...+       .++.+ 
T Consensus       490 thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~-------~~~~~~  562 (700)
T 3rim_A          490 THDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVP-------VLDGTD  562 (700)
T ss_dssp             ECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEEC-------CCTTCC
T ss_pred             eCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCC-------CcCccc
Confidence            4 554 56799998 567789999999999999999999999999999985   5999998765322       12223 


Q ss_pred             CcccccCceEEeeeCC--------cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH--HHHHHHhc--CC
Q 017513          224 SFCLPIGKAKIEREGK--------DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS--TINASVRK--TN  291 (370)
Q Consensus       224 ~~~~~~Gk~~vl~~g~--------dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~--~i~~~~~~--~~  291 (370)
                      .+.+++|+ +++++|.        |++||++|++++.|++|++.|+++||+++|||++|++|||.+  .+++++.+  ++
T Consensus       563 ~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~  641 (700)
T 3rim_A          563 AEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVS  641 (700)
T ss_dssp             HHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCC
T ss_pred             ccccCCCc-EEEecCCccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccce
Confidence            35678898 7899986        999999999999999999999999999999999999999994  45555543  67


Q ss_pred             eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          292 RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       292 ~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      ++|++|++...|+     .+++.++        -.++|+ |.|+.+  .++|.+++|+|+++|+++|+++++
T Consensus       642 ~~vtvEe~~~~G~-----~~~~~~~--------~~~igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~  699 (700)
T 3rim_A          642 ARVAVEAGVAQCW-----HQLVGDT--------GEIVSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD  699 (700)
T ss_dssp             CEEEECSSCSGGG-----HHHHCTT--------CEEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred             EEEEEeCCCchhH-----HHHHhcC--------CcEEcc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence            8999999987654     3444432        267888 888865  578889999999999999999874

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=100.00  E-value=4e-51  Score=428.20  Aligned_cols=301  Identities=18%  Similarity=0.168  Sum_probs=247.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY  105 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~  105 (370)
                      .+.|.. ++++++|++++++|.++++++|+++++++|++.+++++ +.+.+|+++|+|+||||+||+||+|+++|+|||+
T Consensus       370 ~~~~~~-~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~  448 (690)
T 3m49_A          370 LPTYEL-GSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIAL  448 (690)
T ss_dssp             CCCCCT-TCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHH
T ss_pred             cccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHH
Confidence            466665 57889999999999999999999999999998766653 5567888887799999999999999999999999


Q ss_pred             c-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017513          106 Y-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       106 ~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P  181 (370)
                      + |+|||++||+ .|+.++..|||+ .|        .+++||+++.. +|. .|.+|+|| ++.++++||++|||+|++|
T Consensus       449 ~gG~~P~~~tf~-~Fs~f~~~air~-~a--------l~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~P  518 (690)
T 3m49_A          449 HGGLKTYGGTFF-VFSDYLRPAIRL-AA--------LMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRP  518 (690)
T ss_dssp             HSSCEEEEEEEG-GGGGGGHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECC
T ss_pred             cCCCEEEEEecH-HHHHHHHHHHHH-HH--------hcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEee
Confidence            9 9999999875 444444456775 56        37899999985 565 56799998 4577899999999999999


Q ss_pred             CCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCC----CcccccCceEEeeeCC----cEEEEEechhHHH
Q 017513          182 YSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDS----SFCLPIGKAKIEREGK----DVTITAFSKIVGL  252 (370)
Q Consensus       182 ~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~----~~~~~~Gk~~vl~~g~----dv~Iia~G~~~~~  252 (370)
                      +|++|++.++++|+++ ++|++||++|...+       .++.+    .+.++.|+ +++++|.    |++||++|++++.
T Consensus       519 ad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p-------~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~  590 (690)
T 3m49_A          519 ADGNESVAAWRLALESTNKPTALVLTRQDLP-------TLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSL  590 (690)
T ss_dssp             SSHHHHHHHHHHHHHCSSSCEEEECCSSEEE-------CCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCEEEEeecccCC-------CCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHH
Confidence            9999999999999998 79999998764222       11111    14567887 6888875    9999999999999


Q ss_pred             HHHHHHHHHhcCCceeEEEeccccCCCH--HHHHHHHh--cCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017513          253 SLKAAEILAKEGISAEVINLRSIRPLDR--STINASVR--KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI  328 (370)
Q Consensus       253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~--~~i~~~~~--~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i  328 (370)
                      |++|++.|+++||+++|||++|++|||.  +.+++++.  +++++|++|++...| +.    +++...        ...+
T Consensus       591 Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G-~~----~~~~~~--------~~~i  657 (690)
T 3m49_A          591 AVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG-WH----RYVGLE--------GDVL  657 (690)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT-TH----HHHTTT--------CEEE
T ss_pred             HHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh-HH----HHhccC--------CCEE
Confidence            9999999999999999999999999986  45555554  577899999998765 32    444332        2467


Q ss_pred             ecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          329 AGADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       329 g~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      |+ |.|+.+  .++|.+.+|+|+++|+++|++++
T Consensus       658 gi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l  690 (690)
T 3m49_A          658 GI-DTFGASAPGEKIMEEYGFTVENVVRKVKEML  690 (690)
T ss_dssp             CC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred             cc-CcCcCcCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence            87 888864  57888999999999999999864

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=100.00  E-value=5.4e-50  Score=416.37  Aligned_cols=285  Identities=13%  Similarity=0.102  Sum_probs=238.4

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV  112 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~  112 (370)
                      +.++.+|++++++|.++++.+|+++++++|++.++++.   -.+.++|+|+||||+||+||+|+++|+|||++ |+|||+
T Consensus       335 ~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~---~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~  411 (632)
T 3l84_A          335 GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE---LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFS  411 (632)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC---CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred             ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc---hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEE
Confidence            35788999999999999999999999999997544431   11235677999999999999999999999999 999999


Q ss_pred             EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG  189 (370)
Q Consensus       113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (370)
                      +||+ .|++|+++||++ .|+        +++||+++. .+|. .|.+|+|| +++++++||++|||+|++|+|++|++.
T Consensus       412 ~~f~-~F~~~~~~~ir~-~a~--------~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~  481 (632)
T 3l84_A          412 ATFF-IFSEYLKPAARI-AAL--------MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVK  481 (632)
T ss_dssp             EEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHH
T ss_pred             EecH-HHHHHHHHHHHH-Hhc--------cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHH
Confidence            9975 789999999985 663        789999997 3554 56699998 567799999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEecccccCCCCCCcccccCC-CcccccCce-EEeee--CCcEEEEEechhHHHHHHHHHHHHhcCC
Q 017513          190 LLKAAIRDPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA-KIERE--GKDVTITAFSKIVGLSLKAAEILAKEGI  265 (370)
Q Consensus       190 ~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~-~vl~~--g~dv~Iia~G~~~~~al~Aa~~L~~~Gi  265 (370)
                      ++++|++.++|++||++|...         ++.+ .+..++++. +++++  |.|++||++|++++.|++|++.|+++||
T Consensus       482 ~l~~A~~~~~Pv~ir~~r~~~---------~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi  552 (632)
T 3l84_A          482 AWQIALNADIPSAFVLSRQKL---------KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGF  552 (632)
T ss_dssp             HHHHHHHCSSCEEEECCSSCB---------CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCEEEEEcCCCC---------CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCC
Confidence            999999999999999875421         1111 223455554 78888  8999999999999999999999999999


Q ss_pred             ceeEEEeccccCCCHHH--HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHH
Q 017513          266 SAEVINLRSIRPLDRST--INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANL  341 (370)
Q Consensus       266 ~v~Vi~~~~l~P~d~~~--i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l  341 (370)
                      +++|||++|++|||.+.  +++++.+ ++||++|+|.. .||++            .+  . .++|+ |.|+.+  .++|
T Consensus       553 ~~~Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~------------~~--~-~~iGi-d~Fg~sg~~~~l  614 (632)
T 3l84_A          553 ACNVVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHS-NELYK------------FC--H-KVYGI-ESFGESGKDKDV  614 (632)
T ss_dssp             CEEEEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCC-GGGGG------------TC--S-EEECC-CSCCCSSCHHHH
T ss_pred             CeEEEecCcCCCcchhHHHHHHHhcC-CCEEEEeCChh-hhHHH------------Hh--C-eEEEc-CCCcccCCHHHH
Confidence            99999999999999975  6677777 78999999975 45532            11  2 77998 899875  5788


Q ss_pred             HHHhCCCHHHHHHHHHH
Q 017513          342 ERMAVPQVEDIVRAAKR  358 (370)
Q Consensus       342 ~~~~gl~~~~I~~~i~~  358 (370)
                      .+++|+|+++|+++|++
T Consensus       615 ~~~~Glt~~~I~~~i~~  631 (632)
T 3l84_A          615 FERFGFSVSKLVNFILS  631 (632)
T ss_dssp             HHHTTCSHHHHHHHHTT
T ss_pred             HHHhCcCHHHHHHHHhh
Confidence            89999999999998863

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=100.00  E-value=4.3e-50  Score=421.23  Aligned_cols=294  Identities=20%  Similarity=0.176  Sum_probs=247.7

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHH---hCC---CcEeechhhHHHHHHHHHHHhcc
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK---YGP---ERVLDTPITEAGFTGIGVGAAYY  106 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~---~~p---~r~~~~GIaE~~~v~~A~GlA~~  106 (370)
                      ++++++|++++++|.++++++|++|++++|++.+++++ +.+.+|+++   | |   +||||+||+||+|+++|+|||++
T Consensus       392 ~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~  470 (711)
T 3uk1_A          392 GETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLH  470 (711)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence            56789999999999999999999999999998655543 334578888   8 8   99999999999999999999995


Q ss_pred             -CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeC
Q 017513          107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPY  182 (370)
Q Consensus       107 -G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~  182 (370)
                       |+|||+++|+ .|++|+++||++ .|+        +++||+++.. +|. .+++|+|| ++.++++||++|||+|++|+
T Consensus       471 ~G~~Pv~~~f~-~F~~~~~~~ir~-~a~--------~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pa  540 (711)
T 3uk1_A          471 GGYKPFGGTFL-TFSDYSRNALRV-AAL--------MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPA  540 (711)
T ss_dssp             SSCEEEEEEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS
T ss_pred             CCCEEEEEEhH-HHHHHHHHHHHH-hhh--------cCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecC
Confidence             9999999975 899999999986 563        7899999974 454 56699988 56778999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCC---cccccCceEEeee--C----CcEEEEEechhHHHH
Q 017513          183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--G----KDVTITAFSKIVGLS  253 (370)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--g----~dv~Iia~G~~~~~a  253 (370)
                      |++|++.++++|++.++|+|||++|...+       .++.++   +.++.|++ ++++  |    .|++||++|++++.|
T Consensus       541 d~~E~~~~l~~Ai~~~~Pv~ir~~r~~~p-------~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~a  612 (711)
T 3uk1_A          541 DTVETAVAWTYAVAHQHPSCLIFSRQNLA-------FNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELA  612 (711)
T ss_dssp             SHHHHHHHHHHHHHSSSCEEEECCSSEEC-------CCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeeCCCCC-------CCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHH
Confidence            99999999999999999999998764322       122222   45678874 6764  7    799999999999999


Q ss_pred             HHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEec
Q 017513          254 LKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG  330 (370)
Q Consensus       254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~  330 (370)
                      ++|++.|+++||+++|||++|++|||.+.  +++++.++. .+|++|++.. +||++.+    .        .+..++|+
T Consensus       613 l~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~-~g~~~~~----g--------~~~~~iGi  679 (711)
T 3uk1_A          613 MKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVT-DFWRKYV----G--------LEGGVVGI  679 (711)
T ss_dssp             HHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCS-GGGHHHH----T--------TTSEEECC
T ss_pred             HHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCcc-ccHHHHh----C--------CCceEEEe
Confidence            99999999999999999999999999986  567777776 4899999875 6676433    1        13367998


Q ss_pred             CCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          331 ADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       331 ~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                       |.|+.+  .++|.+++|+|+++|++++++++
T Consensus       680 -d~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l  710 (711)
T 3uk1_A          680 -DTFGESAPAGVLFKHFGFTVEHVIETAKAVL  710 (711)
T ss_dssp             -CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             -CCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence             888875  57899999999999999999876

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=100.00  E-value=3.3e-50  Score=422.32  Aligned_cols=296  Identities=18%  Similarity=0.146  Sum_probs=247.8

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV  111 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~  111 (370)
                      ++++++|++++++|.++++.+|+++++++|++.+++++ +.+..|+++| |+||||+||+||+|+++|+|||++ |+|||
T Consensus       352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~  430 (669)
T 2r8o_A          352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY  430 (669)
T ss_dssp             CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred             CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence            56789999999999999999999999999998766654 3356788899 999999999999999999999999 89999


Q ss_pred             EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHH
Q 017513          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDAR  188 (370)
Q Consensus       112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~  188 (370)
                      +++|+ .|+.++++||++ +|+        +++||+++.+ +|. .+++|+||+ ..++++||++||++|++|+|++|++
T Consensus       431 ~~tf~-~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~  500 (669)
T 2r8o_A          431 TSTFL-MFVEYARNAVRM-AAL--------MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESA  500 (669)
T ss_dssp             EEEEG-GGGGTTHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred             EeehH-HHHHHHHHHHHH-HHh--------cCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence            99976 677799999997 563        7899999985 454 356999993 4567999999999999999999999


Q ss_pred             HHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc---ccccCceEEeee--C-CcEEEEEechhHHHHHHHHHHHH
Q 017513          189 GLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF---CLPIGKAKIERE--G-KDVTITAFSKIVGLSLKAAEILA  261 (370)
Q Consensus       189 ~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~---~~~~Gk~~vl~~--g-~dv~Iia~G~~~~~al~Aa~~L~  261 (370)
                      .++++|++. ++|++||++|..++.       ++..++   .+++|+ +++++  | .|++||++|+++..|++|++.|+
T Consensus       501 ~~l~~a~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~~~G~-~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~  572 (669)
T 2r8o_A          501 VAWKYGVERQDGPTALILSRQNLAQ-------QERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLT  572 (669)
T ss_dssp             HHHHHHHHCSSSCEEEECCSSEECC-------CCCCHHHHHHGGGSC-EEEECCSSSCSEEEEECGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCC-------CCCccchhhhccCCC-EEEeccCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence            999999997 899999988765431       222222   266785 77888  7 99999999999999999999999


Q ss_pred             hcCCceeEEEeccccCCCHHH---HHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017513          262 KEGISAEVINLRSIRPLDRST---INASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY  337 (370)
Q Consensus       262 ~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~  337 (370)
                      ++||+++|||++|++|||.+.   +.+++++. +++|++|++.. +||++    ++.+++        .++|+ |.|+.+
T Consensus       573 ~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~----~~~~~~--------~~ig~-d~fg~s  638 (669)
T 2r8o_A          573 AEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYK----YVGLNG--------AIVGM-TTFGES  638 (669)
T ss_dssp             HHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHH----HHTTSS--------EEEEE-CSCCCS
T ss_pred             hcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHH----HhcCCC--------eEEEc-CCCCCc
Confidence            999999999999999999885   55555442 68999999986 78875    343321        55787 678764


Q ss_pred             --HHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513          338 --AANLERMAVPQVEDIVRAAKRACYR  362 (370)
Q Consensus       338 --~~~l~~~~gl~~~~I~~~i~~~l~~  362 (370)
                        .++|.+++|+|+++|+++|++++..
T Consensus       639 g~~~~l~~~~Gl~~~~I~~~~~~~~~~  665 (669)
T 2r8o_A          639 APAELLFEEFGFTVDNVVAKAKELLHH  665 (669)
T ss_dssp             SCHHHHHHHTTCSHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence              5789999999999999999999853

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=100.00  E-value=8.7e-49  Score=409.59  Aligned_cols=294  Identities=20%  Similarity=0.158  Sum_probs=241.5

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchhHH-HHhCCCcEeechhhHHHHHHHHHHHhcc-CCee
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP  110 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~~~-~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp  110 (370)
                      ++++++|+|++++|.++++++|+++++++|++.++++ ++.+.+|+ ++| |+||||+||+||+|+++|+|||++ |+||
T Consensus       352 ~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P  430 (663)
T 3kom_A          352 PVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKP  430 (663)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred             CcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEE
Confidence            5678999999999999999999999999999877665 45556784 889 999999999999999999999999 9999


Q ss_pred             EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHH
Q 017513          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA  187 (370)
Q Consensus       111 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~  187 (370)
                      |++||+ .|++++++||++ .|        .+++||+++. .+|. .+.+|+|| ++.++++||++|||+|++|+|++|+
T Consensus       431 ~~~tf~-~F~~~~~~~ir~-~a--------~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~  500 (663)
T 3kom_A          431 YGGTFL-VFSDYSRNAIRM-SA--------LMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIET  500 (663)
T ss_dssp             EEEEEG-GGHHHHHHHHHH-HH--------HTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHH
T ss_pred             EEEehH-HHHHHHHHHHHH-HH--------hcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHH
Confidence            999965 789999999986 56        3789999996 3454 56689988 5677899999999999999999999


Q ss_pred             HHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCCC---cccccCceEEeee--CCcEEEEEechhHHHHHHHHHHHH
Q 017513          188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--GKDVTITAFSKIVGLSLKAAEILA  261 (370)
Q Consensus       188 ~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--g~dv~Iia~G~~~~~al~Aa~~L~  261 (370)
                      +.++++|++ .++|++||++|...+       .++..+   +.++.|+ +++++  |.|++||++|++++.|++|++.|+
T Consensus       501 ~~~l~~A~~~~~~Pv~ir~~r~~~p-------~~~~~~~~~~~~~~G~-~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~  572 (663)
T 3kom_A          501 MIAWKEAVKSKDTPSVMVLTRQNLM-------PVVQTQHQVANIARGG-YLVKDNPDAKLTIVATGSEVELAVKVANEFE  572 (663)
T ss_dssp             HHHHHHHHHCSSCCEEEECCSSEEC-------CCCCCHHHHHHHTTTC-EEEECCTTCSCEEEECTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEccCccCC-------CcCccccchhcccCce-EEEEecCCCCEEEEEecHHHHHHHHHHHHHH
Confidence            999999999 699999997754221       122222   2456674 67777  799999999999999999999999


Q ss_pred             hcCCceeEEEeccccCCCHHH--HHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC-
Q 017513          262 KEGISAEVINLRSIRPLDRST--INASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY-  337 (370)
Q Consensus       262 ~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~-  337 (370)
                      ++||+++|||++|++|||.+.  +++++.++ ..+|++|++.. .||.+.+    .       +..-..+|+ |.|+.+ 
T Consensus       573 ~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~-~g~~~~~----g-------G~~~~~igi-d~Fg~sg  639 (663)
T 3kom_A          573 KKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQP-DMWYKYM----P-------KAGGEVKGI-YSFGESA  639 (663)
T ss_dssp             HTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-GGGGGGC----C-------TTCEEEECC-CSCCCSS
T ss_pred             hcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCc-ccHHHHh----c-------ccCCcEEEe-cCCcCCC
Confidence            999999999999999999987  55555554 46899998764 4554321    0       123467888 888764 


Q ss_pred             -HHHHHHHhCCCHHHHHHHHHHH
Q 017513          338 -AANLERMAVPQVEDIVRAAKRA  359 (370)
Q Consensus       338 -~~~l~~~~gl~~~~I~~~i~~~  359 (370)
                       .++|.+++|+|+++|+++++++
T Consensus       640 ~~~~l~~~~Glt~e~I~~~~~~~  662 (663)
T 3kom_A          640 PAEDLFKRFGFTVENISNIVAKY  662 (663)
T ss_dssp             CHHHHHHHHTCSHHHHHHHHTTT
T ss_pred             CHHHHHHHHCcCHHHHHHHHHhh
Confidence             5788899999999999999764

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=100.00  E-value=6.5e-49  Score=412.93  Aligned_cols=302  Identities=18%  Similarity=0.193  Sum_probs=246.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHH------HhCCCcEeechhhHHHHHHH
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLE------KYGPERVLDTPITEAGFTGI   99 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~------~~~p~r~~~~GIaE~~~v~~   99 (370)
                      ++.|...++++++|++++++|.++++++|+++++++|++.+++++ +.+..|++      +| |+||||+||+||+|+++
T Consensus       346 ~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~  424 (680)
T 1gpu_A          346 LPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAI  424 (680)
T ss_dssp             SCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHHH
T ss_pred             chhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCceecCCccHHHHHHH
Confidence            355532366789999999999999999999999999998666553 11234777      88 99999999999999999


Q ss_pred             HHHHhccC-Ce-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCC
Q 017513          100 GVGAAYYG-LK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVP  174 (370)
Q Consensus       100 A~GlA~~G-~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP  174 (370)
                      |+|||++| +| ||+++|+ .|+.++++|||+ .|        .+++||+++.. +|. .+++|+|| +..++++||++|
T Consensus       425 a~GlA~~Gg~~~P~~~~f~-~F~~~~~~air~-~a--------~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP  494 (680)
T 1gpu_A          425 MNGISAFGANYKPYGGTFL-NFVSYAAGAVRL-SA--------LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLP  494 (680)
T ss_dssp             HHHHHHHCTTCEEEEEEEH-HHHGGGHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSS
T ss_pred             HHHHHhcCCCceEEEeehH-HHHHHHHHHHHH-HH--------hcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCC
Confidence            99999998 99 9999976 777899999987 66        37899999974 554 35699998 346679999999


Q ss_pred             CcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCcc-cccCceEEeeeC--CcEEEEEechhH
Q 017513          175 GLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFC-LPIGKAKIEREG--KDVTITAFSKIV  250 (370)
Q Consensus       175 ~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~-~~~Gk~~vl~~g--~dv~Iia~G~~~  250 (370)
                      |++|++|+|++|++.++++|+++ ++|++||++|...+       .++.+++. +++|+ +++++|  .|++||++|+++
T Consensus       495 ~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~G~-~vl~~g~~~dvtiva~G~~v  566 (680)
T 1gpu_A          495 NIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLP-------QLEGSSIESASKGG-YVLQDVANPDIILVATGSEV  566 (680)
T ss_dssp             SCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBC-------CCTTCCHHHHTTSC-EEEECCSSCSEEEEECTHHH
T ss_pred             CCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------CCCCcchhhccCCC-EEEecCCCCCEEEEEEcHHH
Confidence            99999999999999999999997 89999998764322       22223344 67784 788887  899999999999


Q ss_pred             HHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEE
Q 017513          251 GLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVER  327 (370)
Q Consensus       251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~  327 (370)
                      +.|++|++.|+++||+++|||++|++|||.+.  +++++.+++ ++|++|++.. +||++.+            .  . +
T Consensus       567 ~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v------------~--~-~  630 (680)
T 1gpu_A          567 SLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYA------------H--Q-S  630 (680)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTC------------S--E-E
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhc------------C--c-c
Confidence            99999999999999999999999999999985  555666654 5599999987 7876432            1  1 2


Q ss_pred             EecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhccc
Q 017513          328 IAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSV  364 (370)
Q Consensus       328 ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~  364 (370)
                      +++ |.|+.+  .++|++++|+|+++|+++|+++++..+
T Consensus       631 ~gv-~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~  668 (680)
T 1gpu_A          631 FGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAFYK  668 (680)
T ss_dssp             ECC-CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred             eee-CcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhhc
Confidence            676 566543  467889999999999999999986444

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=1.4e-48  Score=410.05  Aligned_cols=299  Identities=18%  Similarity=0.197  Sum_probs=247.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHH-HhCCCcEeechhhHHHHHHHHHHHh
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAA  104 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA  104 (370)
                      .+.|...++++++|++++++|.++++++|+++++++|++.++++.. .+..|++ +| |+||||+||+|++|+++|+|||
T Consensus       356 ~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA  434 (675)
T 1itz_A          356 LPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIA  434 (675)
T ss_dssp             SCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHH
T ss_pred             hhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHH
Confidence            3455333678899999999999999999999999999986555421 1234776 88 9999999999999999999999


Q ss_pred             ccC--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCCcc-hHHHHHHHccCCCcEEE
Q 017513          105 YYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQH-SHCYAAWYASVPGLKVL  179 (370)
Q Consensus       105 ~~G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~tH-s~~~~a~~~~iP~~~V~  179 (370)
                      ++|  +|||++||+ .|+.++++||++ +|+        +++||+++.. +|.. +++|+|| +..++++||++||++|+
T Consensus       435 ~~G~~~~P~~~t~~-~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~  504 (675)
T 1itz_A          435 LHSPGFVPYCATFF-VFTDYMRGAMRI-SAL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML  504 (675)
T ss_dssp             TTCTTCEEEEEEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEE
T ss_pred             hcCCCCEEEEEEHH-HHHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEE
Confidence            999  999999976 677899999986 563        7899999983 5544 5699999 34557999999999999


Q ss_pred             eeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeee---C--CcEEEEEechhHHH
Q 017513          180 SPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIERE---G--KDVTITAFSKIVGL  252 (370)
Q Consensus       180 ~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~---g--~dv~Iia~G~~~~~  252 (370)
                      +|+|++|++.++++|++. ++|++||++|...+       .++.+.+ .+++| ++++++   |  .|++||++|++++.
T Consensus       505 ~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p-------~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~  576 (675)
T 1itz_A          505 RPADGNETAGAYKVAVLNRKRPSILALSRQKLP-------HLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEI  576 (675)
T ss_dssp             CCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBC-------CCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHH
T ss_pred             ECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------CCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHH
Confidence            999999999999999997 89999998864222       1222333 47788 578888   7  89999999999999


Q ss_pred             HHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcC--CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017513          253 SLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI  328 (370)
Q Consensus       253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~--~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i  328 (370)
                      |++|++.|+++||+++|||++|++|||.+.  +++++.++  +++|++|++.. +||++.    +        ..+..++
T Consensus       577 al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~----~--------~~~~~~i  643 (675)
T 1itz_A          577 AAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKY----V--------GAQGKAI  643 (675)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHH----H--------CSSCEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHh----c--------CCCceEE
Confidence            999999999999999999999999999986  44555554  68999999987 788862    2        1355789


Q ss_pred             ecCCCCCCC--HHHHHHHhCCCHHHHHHHHHH
Q 017513          329 AGADVPMPY--AANLERMAVPQVEDIVRAAKR  358 (370)
Q Consensus       329 g~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~  358 (370)
                      |+ |.|+.+  .++|++++|+|+++|+++|++
T Consensus       644 g~-d~fg~sg~~~~l~~~~gl~~~~I~~~i~~  674 (675)
T 1itz_A          644 GI-DKFGASAPAGTIYKEYGITVESIIAAAKS  674 (675)
T ss_dssp             CC-CSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred             Ee-CCCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence            99 888764  467899999999999999864

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=5.1e-49  Score=413.09  Aligned_cols=297  Identities=18%  Similarity=0.150  Sum_probs=250.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-c--chhHHH-HhCCCcEeechhhHHHHHHHHHH
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-I--SKGLLE-KYGPERVLDTPITEAGFTGIGVG  102 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~--~~~~~~-~~~p~r~~~~GIaE~~~v~~A~G  102 (370)
                      .+.|   ++++++|++++++|.++++++|+++++++|++.+++++. .  +..|++ +| |+||||+||+|++|+++|+|
T Consensus       345 ~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~G  420 (673)
T 1r9j_A          345 LPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNG  420 (673)
T ss_dssp             SCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHH
T ss_pred             cccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHH
Confidence            3555   567899999999999999999999999999986666541 0  233776 89 99999999999999999999


Q ss_pred             Hhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEE
Q 017513          103 AAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKV  178 (370)
Q Consensus       103 lA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V  178 (370)
                      ||++ |++||+++|+ .|+.++++||++ +|+        +++||+++.. +|. .+++|+|| +..++++++++||++|
T Consensus       421 lA~~GG~~P~~~~~~-~F~~~~~~~ir~-~a~--------~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V  490 (673)
T 1r9j_A          421 LDAHDGIIPFGGTFL-NFIGYALGAVRL-AAI--------SHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQV  490 (673)
T ss_dssp             HHHHSSCEEEEEEEG-GGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEE
T ss_pred             HHhcCCCEEEEEehH-HHHHHHHHHHHH-HHh--------cCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEE
Confidence            9999 6999999976 677899999987 663        7899999974 554 45699999 3455799999999999


Q ss_pred             EeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeeeC--CcEEEEEechhHHHHH
Q 017513          179 LSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSL  254 (370)
Q Consensus       179 ~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~g--~dv~Iia~G~~~~~al  254 (370)
                      ++|+|++|+..++++|++. ++|++||++|...+       .++.+.+ .+++| ++++++|  .|++||++|+++..|+
T Consensus       491 ~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al  562 (673)
T 1r9j_A          491 IRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTE-------PQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAV  562 (673)
T ss_dssp             ECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEEC-------CCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC-------CCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHH
Confidence            9999999999999999997 89999998865332       1222333 47788 5788888  8999999999999999


Q ss_pred             HHHHHHHhcCCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecC
Q 017513          255 KAAEILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGA  331 (370)
Q Consensus       255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~  331 (370)
                      +|++.|+++ |+++|||++|++|||.+.   +.+++++++++|++|++.. +||++.+              ++. +|+ 
T Consensus       563 ~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v--------------~~~-~g~-  624 (673)
T 1r9j_A          563 DAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS--------------HAH-VGM-  624 (673)
T ss_dssp             HHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------SEE-ESC-
T ss_pred             HHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc--------------Cce-EEe-
Confidence            999999999 999999999999999985   8888989889999999987 7776422              233 888 


Q ss_pred             CCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcc
Q 017513          332 DVPMPY--AANLERMAVPQVEDIVRAAKRACYRS  363 (370)
Q Consensus       332 d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~  363 (370)
                      |.|+.+  .++|++++|+|+++|+++|++++++.
T Consensus       625 d~f~~sg~~~~L~~~~g~~~~~I~~~i~~~l~~~  658 (673)
T 1r9j_A          625 SGFGASAPAGVLYKKFGITVEEVVRTGRELAKRF  658 (673)
T ss_dssp             SSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence            888764  47899999999999999999998543

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-49  Score=411.15  Aligned_cols=290  Identities=18%  Similarity=0.103  Sum_probs=242.1

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHH-HhCCCcEeechhhHHHHHHHHHHHhccC-Cee
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYG-LKP  110 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp  110 (370)
                      ++++++|++++++|.++++++|+++++++|++.+++++. .+.+|++ +| |+||||+||+|++|+++|+|||++| +||
T Consensus       346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P  424 (651)
T 2e6k_A          346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA  424 (651)
T ss_dssp             CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred             CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence            457899999999999999999999999999986555432 3456887 89 9999999999999999999999998 999


Q ss_pred             EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHH
Q 017513          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDA  187 (370)
Q Consensus       111 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~  187 (370)
                      |++||+ .|+.++++||+. .|        .+++||+++. .+|. .+++|+||+ ..++++||++|||+|++|+|++|+
T Consensus       425 ~~~t~~-~F~~~~~~air~-~a--------~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~  494 (651)
T 2e6k_A          425 YGGTFL-VFSDYMRPAIRL-AA--------LMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYET  494 (651)
T ss_dssp             EEEEEG-GGGGGSHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred             EEEeHH-HHHHHHHHHHHH-HH--------hcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHH
Confidence            999986 566788899876 56        3789999996 4554 456999993 355799999999999999999999


Q ss_pred             HHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeeeC--CcEEEEEechhHHHHHHHHHHHHhc
Q 017513          188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAKE  263 (370)
Q Consensus       188 ~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~g--~dv~Iia~G~~~~~al~Aa~~L~~~  263 (370)
                      +.++++|++. ++|++||++|..++.       ++.+++ .++.| .+++++|  .|++||++|+++..|++|++.|+++
T Consensus       495 ~~~l~~A~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~  566 (651)
T 2e6k_A          495 FYAWLVALRRKEGPTALVLTRQAVPL-------LSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREK  566 (651)
T ss_dssp             HHHHHHHHHCCSSCEEEECCSSCBCC-------CCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCCCCC-------CCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhc
Confidence            9999999997 899999988754331       221122 36677 4788887  8999999999999999999999999


Q ss_pred             CCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--H
Q 017513          264 GISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--A  338 (370)
Q Consensus       264 Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~  338 (370)
                      ||+++|||++|++|||.+.   +.+++++++++|++|++.. +||++.+              + .++|+ |.|+.+  .
T Consensus       567 Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v--------------~-~~ig~-d~f~~sg~~  629 (651)
T 2e6k_A          567 GVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA--------------H-KVVAL-DRFGASAPY  629 (651)
T ss_dssp             TCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------S-EEECC-CSCCCSCCT
T ss_pred             CCcEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC--------------C-CEEEe-CCCCCCCCH
Confidence            9999999999999999995   5444444578999999987 7876422              3 78999 888764  3


Q ss_pred             HHHHHHhCCCHHHHHHHHHHH
Q 017513          339 ANLERMAVPQVEDIVRAAKRA  359 (370)
Q Consensus       339 ~~l~~~~gl~~~~I~~~i~~~  359 (370)
                      ++|++++|+|+++|+++|+++
T Consensus       630 ~~l~~~~gl~~~~I~~~i~~~  650 (651)
T 2e6k_A          630 PEVYERLGFTPERVAEAFLSL  650 (651)
T ss_dssp             THHHHHTTCCHHHHHHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHh
Confidence            688899999999999999865

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=100.00  E-value=2.2e-45  Score=393.93  Aligned_cols=309  Identities=19%  Similarity=0.196  Sum_probs=254.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHHHH
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV  101 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~  101 (370)
                      ..+|..+++.+|.+++++|++|+++++|++.              .+|.|..+.+|.++|+|+||||+||+|++++|+|+
T Consensus       590 ~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~  669 (933)
T 2jgd_A          590 LFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEY  669 (933)
T ss_dssp             CBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHH
Confidence            5789999999999999999999999999985              34556678889999999999999999999999999


Q ss_pred             HHhccCCe--eEEEcccchHHH---HHHHHHHHHh-hhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHHc--c
Q 017513          102 GAAYYGLK--PVVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA--S  172 (370)
Q Consensus       102 GlA~~G~r--p~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~~--~  172 (370)
                      |+|++|.+  |+++.++++|++   |++|||+++. +++.      +++|||++.+.|.. +.|++||+ .+++++.  +
T Consensus       670 G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~------~~~~vv~~l~~G~~-g~G~~Hss~~~E~~l~~~~  742 (933)
T 2jgd_A          670 GYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWG------RMCGLVMLLPHGYE-GQGPEHSSARLERYLQLCA  742 (933)
T ss_dssp             HHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHC------CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHTCC
T ss_pred             HHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHc------cCCCEEEEEeCCCC-CCCcccccchHHHHHHHhC
Confidence            99999998  999866778886   9999999988 7763      68899999986654 44777744 4677775  5


Q ss_pred             CCCcEEEeeCCHHHHHHHHHHHH-hC-CCCEEEEecccccCCCCCCc--ccccCCCcccccCceEEeeeCCcE--EEEEe
Q 017513          173 VPGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPVS--AEVLDSSFCLPIGKAKIEREGKDV--TITAF  246 (370)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~l~~~~~~~~--~~~~~~~~~~~~Gk~~vl~~g~dv--~Iia~  246 (370)
                      +|||+|++|+|+.|++.++++++ +. ++|++|++||.+++.+....  .++++..+.+++|++.+++ |.|+  +|+++
T Consensus       743 ~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~  821 (933)
T 2jgd_A          743 EQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCS  821 (933)
T ss_dssp             TTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEEC
T ss_pred             CCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEc
Confidence            69999999999999999999985 64 89999999999887532221  1222345667889888777 8899  77788


Q ss_pred             chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCCCCC
Q 017513          247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGYLDA  323 (370)
Q Consensus       247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~  323 (370)
                      |.++..+++|++.|+++  +++|||+++|+|||.+.|.+++++++   +||++||+..+||+|+.|+..+.+.++.  +.
T Consensus       822 G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~  897 (933)
T 2jgd_A          822 GKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GA  897 (933)
T ss_dssp             TTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TC
T ss_pred             hHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CC
Confidence            88877777777888765  89999999999999999999999998   8999999999999999999999886531  36


Q ss_pred             CEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 017513          324 PVERIAGADVPMPYAANLERMAVPQVEDIVRAAK  357 (370)
Q Consensus       324 ~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~  357 (370)
                      ++.++|.+|.+.|... +++.+....+.|++++.
T Consensus       898 ~v~~vg~~d~~~pa~g-~~~~h~~~~~~i~~~a~  930 (933)
T 2jgd_A          898 SLRYAGRPASASPAVG-HMSVHQKQQQDLVNDAL  930 (933)
T ss_dssp             EEEEEEECCCSSSSCS-CHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCcCCCCcC-CHHHHHHHHHHHHHHHh
Confidence            8999999999887432 23344556777777665

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=100.00  E-value=7.6e-45  Score=387.78  Aligned_cols=286  Identities=18%  Similarity=0.203  Sum_probs=235.8

Q ss_pred             HHHHHH--HHHHhcCCCeEEecCCCCCC--------------CCccccchhH------HHHhCCCcEeechhhHHHHHHH
Q 017513           42 ALNSAL--DEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGI   99 (370)
Q Consensus        42 a~~~~L--~~l~~~~~~ivvi~~Dl~~~--------------~g~~~~~~~~------~~~~~p~r~~~~GIaE~~~v~~   99 (370)
                      +++++|  .++++++++|+++++|++.+              +|+|..+.+|      .++++|+||||+||+|++++|+
T Consensus       520 a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~  599 (868)
T 2yic_A          520 AFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGF  599 (868)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHH
Confidence            444443  36799999999999999863              6677888899      7766699999999999999999


Q ss_pred             HHHHhccC--CeeEEEcccchHHHHH---HHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHH--c
Q 017513          100 GVGAAYYG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--A  171 (370)
Q Consensus       100 A~GlA~~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~--~  171 (370)
                      |+|+|+.|  .+|+++.++++|++++   +||++++..   ++|+  +++|||++.+.|.. ++|++||+. +++++  +
T Consensus       600 a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~---~k~~--~~~~vvi~~p~G~~-G~Gp~Hs~~~~E~~l~l~  673 (868)
T 2yic_A          600 EYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWG--QLSDVVLLLPHGHE-GQGPDHTSGRIERFLQLW  673 (868)
T ss_dssp             HHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHC--CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHHC
T ss_pred             HHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHH---HHhC--CCCCEEEEecCCCC-CCChhhcCCcHHHHHhcC
Confidence            99999999  5678888889999888   999988763   2232  48899999986654 599999876 56666  9


Q ss_pred             cCCCcEEEeeCCHHHHHHHHHHHHhCC--CCEEEEecccccCCCCCCcc--cccCCCcccccCceEE---eeeCCcE--E
Q 017513          172 SVPGLKVLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--T  242 (370)
Q Consensus       172 ~iP~~~V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~v---l~~g~dv--~  242 (370)
                      ++|||+|++|+|+.|++.++++++..+  +|+||++||.+|+.+.+...  ++.+..+..++|++.+   +++|+|+  +
T Consensus       674 ~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~  753 (868)
T 2yic_A          674 AEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRL  753 (868)
T ss_dssp             CTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEE
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEE
Confidence            999999999999999999999988764  99999999999886432211  1111234347898887   7889999  9


Q ss_pred             EEEechhHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCe---EEEEecCCCCCChHHHHHHHHHhhcc
Q 017513          243 ITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEICASVIEESF  318 (370)
Q Consensus       243 Iia~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~GGlg~~i~~~l~~~~~  318 (370)
                      |||+|.+ ..++++++  +++| ++++|||+++|+|||.++|.++++++++   ||++||+..+||+++.|+..+.+. +
T Consensus       754 Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~  829 (868)
T 2yic_A          754 LLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-L  829 (868)
T ss_dssp             EEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-C
T ss_pred             EEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-h
Confidence            9999998 66666665  6679 9999999999999999999999999987   899999999999999999999873 2


Q ss_pred             CCCCCCEEEEecCCCCCCC
Q 017513          319 GYLDAPVERIAGADVPMPY  337 (370)
Q Consensus       319 ~~l~~~~~~ig~~d~~~~~  337 (370)
                      ..++.|+.++|.+|.+.|.
T Consensus       830 ~~l~~~v~~vg~~d~~~p~  848 (868)
T 2yic_A          830 PDHFTGLKRISRRAMSAPS  848 (868)
T ss_dssp             HHHHTTCEEEEECCCSSSS
T ss_pred             hhcCCCeEEeccCCcCCCC
Confidence            2234689999999998874

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=5.4e-44  Score=389.66  Aligned_cols=282  Identities=18%  Similarity=0.205  Sum_probs=235.3

Q ss_pred             HHHHHHhcCCCeEEecCCCCCC--------------CCccccchhH------HHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017513           46 ALDEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGIGVGAAY  105 (370)
Q Consensus        46 ~L~~l~~~~~~ivvi~~Dl~~~--------------~g~~~~~~~~------~~~~~p~r~~~~GIaE~~~v~~A~GlA~  105 (370)
                      +..++++++++|+++++|++..              +|+|..+.+|      .++++|+||||+||+|++++|+|+|+|+
T Consensus       771 a~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~  850 (1113)
T 2xt6_A          771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSV  850 (1113)
T ss_dssp             HHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHh
Confidence            3445699999999999999852              5667778899      7766699999999999999999999999


Q ss_pred             cC--CeeEEEcccchHHHHH---HHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHH--ccCCCcE
Q 017513          106 YG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--ASVPGLK  177 (370)
Q Consensus       106 ~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~--~~iP~~~  177 (370)
                      .|  .+|+++.++++|++++   +||++++..   ++|+  +++|||++.+.|.. |+|++||+. +++++  +++|||+
T Consensus       851 ~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~---~k~~--~~~~vv~~lp~G~~-G~G~~Hs~~~~E~~l~l~~~pnm~  924 (1113)
T 2xt6_A          851 GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWG--QLSDVVLLLPHGHE-GQGPDHTSGRIERFLQLWAEGSMT  924 (1113)
T ss_dssp             HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHC--CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHHCCTTSCE
T ss_pred             cCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH---HHhC--CCCCEEEEeCCCCC-CCChhhhcccHHHHHhcCCCCCcE
Confidence            99  6678898899999887   999998763   2332  48999999986654 599999886 67777  9999999


Q ss_pred             EEeeCCHHHHHHHHHHHHhCC--CCEEEEecccccCCCCCCcc--cccCCCcccccCceEE---eeeCCcE--EEEEech
Q 017513          178 VLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--TITAFSK  248 (370)
Q Consensus       178 V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~v---l~~g~dv--~Iia~G~  248 (370)
                      |++|+|+.|++.+++.++..+  +|++|++||.||+.+.+...  ++.+..+..++|++.+   +++|+|+  +|||+|.
T Consensus       925 V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~ 1004 (1113)
T 2xt6_A          925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGK 1004 (1113)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECST
T ss_pred             EEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECH
Confidence            999999999999999988764  99999999999986532211  1111234347898887   7889999  9999999


Q ss_pred             hHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCe---EEEEecCCCCCChHHHHHHHHHhhccCCCCCC
Q 017513          249 IVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEICASVIEESFGYLDAP  324 (370)
Q Consensus       249 ~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~  324 (370)
                      + ..++++++  +++| ++++|||+++|+|||.++|.++++++++   +|++||+..+||+++.|+..+.+. +..++.|
T Consensus      1005 ~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~ 1080 (1113)
T 2xt6_A         1005 I-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTG 1080 (1113)
T ss_dssp             H-HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTT
T ss_pred             H-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCC
Confidence            8 66776666  5679 9999999999999999999999999988   899999999999999999999873 3223468


Q ss_pred             EEEEecCCCCCCC
Q 017513          325 VERIAGADVPMPY  337 (370)
Q Consensus       325 ~~~ig~~d~~~~~  337 (370)
                      +.++|.+|.+.|.
T Consensus      1081 ~~~vg~~d~~~p~ 1093 (1113)
T 2xt6_A         1081 LKRISRRAMSAPS 1093 (1113)
T ss_dssp             CEEEEECCCSSSS
T ss_pred             eEEEccCCcCCCC
Confidence            9999999998874

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=100.00  E-value=6.2e-42  Score=366.01  Aligned_cols=309  Identities=15%  Similarity=0.134  Sum_probs=242.2

Q ss_pred             cccccHHHHHHHHHHHHHhcC---CCeEEecCCCCCCCCc------ccc----chhHH-----------HHhCCCcEeec
Q 017513           34 VKQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGA------YKI----SKGLL-----------EKYGPERVLDT   89 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~---~~ivvi~~Dl~~~~g~------~~~----~~~~~-----------~~~~p~r~~~~   89 (370)
                      ++..++|++|+++|.++++++   ++||++++|+....|+      .++    ...|.           +.| |+||||+
T Consensus       489 ~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~  567 (886)
T 2qtc_A          489 SKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQE  567 (886)
T ss_dssp             SSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEEC
T ss_pred             CCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeee
Confidence            467899999999999999998   9999999996521121      110    12343           566 9999999


Q ss_pred             hhhHHHH-H---HHHHHHhccC--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCC--CCCCCCCc
Q 017513           90 PITEAGF-T---GIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG--AAAGVGAQ  161 (370)
Q Consensus        90 GIaE~~~-v---~~A~GlA~~G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G--~~~~~G~t  161 (370)
                      ||+|++| +   ++|+|+|++|  ++||+.+|+.|.++|++||+++++++        ++.++++....+  ..+++|+|
T Consensus       568 GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~--------~~~~v~l~~~~~~~~~g~dG~t  639 (886)
T 2qtc_A          568 GINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQ--------QARGFLIGGTSGRTTLNGEGLQ  639 (886)
T ss_dssp             CSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHT--------TCCCEEEEESCSTTTSTTTCTT
T ss_pred             ccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHH--------hcCCEEEEEecCcccCCCCCCc
Confidence            9999995 5   6999999999  89999888754489999999999984        567888876533  34679999


Q ss_pred             chH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCC----EEEEecccccCCCCCCcccccCCC-cccccCceEE
Q 017513          162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDP----VVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKI  234 (370)
Q Consensus       162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~P----v~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk~~v  234 (370)
                      |++ .++++++++||++|++|+|+.|+..+++++++. ++|    +++++++..  ++... +.++... ..+ +|++++
T Consensus       640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~--~~~~~-p~~~~~~~~~~-~gga~v  715 (886)
T 2qtc_A          640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN--ENYHM-PAMPEGAEEGI-RKGIYK  715 (886)
T ss_dssp             TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS--CCBCC-CCCCTTCHHHH-HHTCEE
T ss_pred             cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc--cccCC-CCCCcchhhhc-cCceEE
Confidence            965 778999999999999999999999999999996 679    999987642  00100 1222221 234 788999


Q ss_pred             eeeC----CcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHH-------------------HHHHHhcC
Q 017513          235 EREG----KDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRST-------------------INASVRKT  290 (370)
Q Consensus       235 l~~g----~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~-------------------i~~~~~~~  290 (370)
                      +++|    .|++||++|+++..|++|++.|+++ ||+++|||++|++|||.+.                   +.+.+.. 
T Consensus       716 lr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-  794 (886)
T 2qtc_A          716 LETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-  794 (886)
T ss_dssp             EEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-
T ss_pred             EEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-
Confidence            9987    7999999999999999999999999 9999999999999999985                   3444444 


Q ss_pred             CeEEEEecCCCCCChHHHHHHHHHhhccCCCC-CCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccccc
Q 017513          291 NRLVTVEEGFPQHGVGAEICASVIEESFGYLD-APVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVPMA  367 (370)
Q Consensus       291 ~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~-~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~  367 (370)
                      +.+|++|++..  |+++.+..++        + .++..+|+ |.|+.+  .++|.+++|+|+++|++++++++.+...+.
T Consensus       795 ~~vVa~ed~~~--g~~~~~~~~~--------~~~~~~~lG~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~~g~~~  863 (886)
T 2qtc_A          795 APAVASTDYMK--LFAEQVRTYV--------PADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEID  863 (886)
T ss_dssp             SCEEEECSSCT--HHHHTTGGGC--------CSSCEEEECC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEEeccc--chHHHHHHHc--------CCCCeEEEEe-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC
Confidence            56788887765  5665443332        3 57889999 888764  578999999999999999999997655543

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=100.00  E-value=3e-38  Score=332.49  Aligned_cols=305  Identities=10%  Similarity=0.076  Sum_probs=238.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhHHHH--------hC--C--------CcEeechhhHHHH
Q 017513           36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEK--------YG--P--------ERVLDTPITEAGF   96 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~~~~--------~~--p--------~r~~~~GIaE~~~   96 (370)
                      +...+.+++++|.++++++|+ ++++++|+..++.+    ..|.+.        |.  |        +|||+ ||+||+|
T Consensus       428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t----~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M  502 (845)
T 3ahc_A          428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRL----NATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQC  502 (845)
T ss_dssp             EECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTC----GGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccH----HHHHhhcccccccccccCCcccccCCCCcEee-eecHHHH
Confidence            445677888999999999999 99999999865553    333333        23  5        89999 9999999


Q ss_pred             HHHHHHHhccCCeeEEEcccchHH--HHHHHH----HHHHhhhccccCCCCccc-CEEEEeC-CCC-CCCCCCcchHH--
Q 017513           97 TGIGVGAAYYGLKPVVEFMTFNFS--MQAIDH----IINSAAKSNYMSSGQISV-PIVFRGP-NGA-AAGVGAQHSHC--  165 (370)
Q Consensus        97 v~~A~GlA~~G~rp~~~t~~~~f~--~ra~dq----i~~~~a~~~~~~~g~~~~-pvv~~~~-~G~-~~~~G~tHs~~--  165 (370)
                      ++++.|+|+.|..||+.+|++|+.  .|+++|    ||++++.+.|+.    ++ +|.++.. +|. .+.+|+|| |+  
T Consensus       503 ~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~----~~~~v~~v~Th~si~~GeDGpTH-Q~~e  577 (845)
T 3ahc_A          503 EGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK----PISSVNLLVSSHVWRQDHNGFSH-QDPG  577 (845)
T ss_dssp             HHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSC----CCBCEEEEEESCGGGCTTTCGGG-CCCT
T ss_pred             HHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcc----cCCceEEEEeCCceeecCCCCCC-CCcH
Confidence            999999999999999999875554  899999    999855443322    33 4666664 454 46799999 43  


Q ss_pred             HH--HHHc---cCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe-cccccCCCCCCcccccCCCc---ccccCceEEe-
Q 017513          166 YA--AWYA---SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE-NELLYGESFPVSAEVLDSSF---CLPIGKAKIE-  235 (370)
Q Consensus       166 ~~--a~~~---~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~-~~~l~~~~~~~~~~~~~~~~---~~~~Gk~~vl-  235 (370)
                      ++  ..++   .+||++|+.|+|++|+..+++.|++..+|++++. +|.    +.   +.+.+.+.   .+..|++.+. 
T Consensus       578 ~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq----~~---p~~~~~~~a~~~~~~G~~v~~~  650 (845)
T 3ahc_A          578 VTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQ----PA---PTWVTLDEARAELEAGAAEWKW  650 (845)
T ss_dssp             HHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCS----CE---EECSCHHHHHHHHHHSEEECTT
T ss_pred             HHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCC----CC---CccCCchhhhhhhcCCeEEEEe
Confidence            33  3333   6799999999999999999999999988888775 442    11   22332232   3567877666 


Q ss_pred             --ee--C--CcEEEEEechh-HHHHHHHHHHHHhcCCceeEEEeccc---cCCCHHHHHHHHhcCCeEEEEecCCC--CC
Q 017513          236 --RE--G--KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSI---RPLDRSTINASVRKTNRLVTVEEGFP--QH  303 (370)
Q Consensus       236 --~~--g--~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~l---~P~d~~~i~~~~~~~~~vvvvEe~~~--~G  303 (370)
                        ++  |  .|++||++|+. +.+|++|++.|+++||+++|||+.+|   +|.+++.+....++++.|+++|+|.+  .|
T Consensus       651 as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~g  730 (845)
T 3ahc_A          651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYH  730 (845)
T ss_dssp             TCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEES
T ss_pred             ecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeec
Confidence              35  5  89999999966 55599999999999999999999999   67665544334456678899999987  69


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC--CHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMP--YAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~--~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      |+++.|++.+.++.   ...++.++|.+| ++.  .+.+|..++|+|.++|++++++++.
T Consensus       731 GlgsaV~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~  786 (845)
T 3ahc_A          731 SYAQDVRGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID  786 (845)
T ss_dssp             SCHHHHHHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence            99999999998862   134789999998 654  4678899999999999999999886

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=99.95  E-value=5.6e-29  Score=246.26  Aligned_cols=287  Identities=20%  Similarity=0.207  Sum_probs=100.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHH---HhCCCcEeechhhHHHHHHHHHHHhccCCeeEE
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~---~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~  112 (370)
                      .++-.+|++.++..   ...+++..-+-..    +..+...|.+   ++ .-+|+.+. +|++++++|.|+|++|.||++
T Consensus        22 ~~~GneAva~~~~~---ag~~~v~~yPgtP----~t~i~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~   92 (395)
T 1yd7_A           22 FIQGDEAIARAAIL---AGCRFYAGYPITP----ASEIFEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMT   92 (395)
T ss_dssp             EEEHHHHHHHHHHH---HTCCEEEECCBTT----TBCHHHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEE
T ss_pred             EeEHHHHHHHHHHH---cCCCEEEEEECcc----hHHHHHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEE
Confidence            45667888877764   3455665544332    1122344444   45 46899988 999999999999999999999


Q ss_pred             EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC--CCCCCCCC--cchHHHHHHHccCC--CcEEEeeCCHHH
Q 017513          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGA--QHSHCYAAWYASVP--GLKVLSPYSSED  186 (370)
Q Consensus       113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~--G~~~~~G~--tHs~~~~a~~~~iP--~~~V~~P~d~~e  186 (370)
                      ++++++| .+++|||.+. +        +.++|+|++...  |...+.+.  .|++...+++.+.|  ++.+++|+|++|
T Consensus        93 ~ts~~G~-~~~~d~l~~a-a--------~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qe  162 (395)
T 1yd7_A           93 ATSGPGF-SLMQENIGYA-V--------MTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQE  162 (395)
T ss_dssp             EEETTHH-HHHTTTCC-------------CCCCEEEEEEC--------------------------CCCCEEECCCSHHH
T ss_pred             EeCchHH-HHHHHHHHHH-H--------hcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHH
Confidence            9988655 4589998753 3        378999998743  33323222  34333345667755  999999999999


Q ss_pred             HHHHHHHHH----hCCCCEEEEecccccCCCC----CCcccc----------cC---CCccc--cc--------Cc----
Q 017513          187 ARGLLKAAI----RDPDPVVFLENELLYGESF----PVSAEV----------LD---SSFCL--PI--------GK----  231 (370)
Q Consensus       187 ~~~~l~~a~----~~~~Pv~i~~~~~l~~~~~----~~~~~~----------~~---~~~~~--~~--------Gk----  231 (370)
                      +++++.+|+    +.+.||++++++.++....    +....+          +.   .+|..  +.        |.    
T Consensus       163 a~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~  242 (395)
T 1yd7_A          163 AFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRT  242 (395)
T ss_dssp             HHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCcee
Confidence            999999999    4579999998753321100    000000          00   00100  00        00    


Q ss_pred             -----------------------------------------e-EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeE
Q 017513          232 -----------------------------------------A-KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV  269 (370)
Q Consensus       232 -----------------------------------------~-~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V  269 (370)
                                                               . .+.++|+|++||+||+++..+++|++.|+++|++++|
T Consensus       243 ~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~v  322 (395)
T 1yd7_A          243 YVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGL  322 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEE
Confidence                                                     0 1124678999999999999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCH
Q 017513          270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV  349 (370)
Q Consensus       270 i~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~  349 (370)
                      ||+++++|||.+.|.++++++++|+|+||+.  ||++++|++.+.+.      .++.+++..+           ..-+++
T Consensus       323 i~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~~------~~~~~~gk~~-----------g~~~~~  383 (395)
T 1yd7_A          323 LKIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANGK------AEVKLISKIG-----------GEVHTP  383 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcCC------CCeEEEeccC-----------CCcCCH
Confidence            9999999999999999999999999999996  99999999888641      2344444332           124788


Q ss_pred             HHHHHHHHHHH
Q 017513          350 EDIVRAAKRAC  360 (370)
Q Consensus       350 ~~I~~~i~~~l  360 (370)
                      ++|.+++++++
T Consensus       384 ~ei~~~i~~~~  394 (395)
T 1yd7_A          384 MEIFEFIRREF  394 (395)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHhh
Confidence            99998888765

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.86  E-value=4.1e-20  Score=204.26  Aligned_cols=257  Identities=14%  Similarity=0.140  Sum_probs=177.9

Q ss_pred             hCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCC
Q 017513           81 YGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGV  158 (370)
Q Consensus        81 ~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~  158 (370)
                      |+..+.+....+|.++++++.|+|.+|.|++++|.++.|+ .+.+.+.. ++.        .++|+|++.  ++|++.+.
T Consensus        51 ~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~-lm~e~l~~-~ag--------~~~P~Vi~va~R~g~~~gl  120 (1231)
T 2c42_A           51 FGQTLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLL-LMIPNMYK-ISG--------ELLPGVFHVTARAIAAHAL  120 (1231)
T ss_dssp             TSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHH-HHHHHHHH-HHH--------TTCCCEEEEEECCCCSSSB
T ss_pred             cCCceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHH-HHHHHHHH-HhC--------CCCCEEEEECCCCccCCCC
Confidence            5566899999999999999999999999999999775554 44576643 331        478999987  34554442


Q ss_pred             --CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccccCC---CCCCcc--c---c----
Q 017513          159 --GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLYGE---SFPVSA--E---V----  220 (370)
Q Consensus       159 --G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l~~~---~~~~~~--~---~----  220 (370)
                        .+.|++   .+..+.+|+.|++|+|++|+++++..|+    +++.||+++.+..++..   ++.+..  .   +    
T Consensus       121 si~~~hsd---~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~  197 (1231)
T 2c42_A          121 SIFGDHQD---IYAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQK  197 (1231)
T ss_dssp             CCSCCSHH---HHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHH
T ss_pred             cCCCchhh---HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChh
Confidence              344533   3567889999999999999999999985    46899999987543221   000000  0   0    


Q ss_pred             ---------cCCCccccc--------------------------------------Cc----eE-EeeeCCcEEEEEech
Q 017513          221 ---------LDSSFCLPI--------------------------------------GK----AK-IEREGKDVTITAFSK  248 (370)
Q Consensus       221 ---------~~~~~~~~~--------------------------------------Gk----~~-vl~~g~dv~Iia~G~  248 (370)
                               .+++...+.                                      |+    .+ .-.+++|++||+||+
T Consensus       198 ~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs  277 (1231)
T 2c42_A          198 ALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGS  277 (1231)
T ss_dssp             HHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECST
T ss_pred             hhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCH
Confidence                     000000111                                      11    12 124679999999999


Q ss_pred             hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hcCCeEEEEecCCCCC----ChHHHHHHHHHhhccCCCCC
Q 017513          249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEICASVIEESFGYLDA  323 (370)
Q Consensus       249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~~~~vvvvEe~~~~G----Glg~~i~~~l~~~~~~~l~~  323 (370)
                      ++..+++|++.|+++|++++||++++++|||.+.|.+++ +++++|+|+|+....|    .+..++...+....   ...
T Consensus       278 ~~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~  354 (1231)
T 2c42_A          278 SCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAM  354 (1231)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCC
Confidence            999999999999999999999999999999999999998 6779999999984332    24456666665421   011


Q ss_pred             CEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513          324 PVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR  362 (370)
Q Consensus       324 ~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~  362 (370)
                      ++...+.....         ...++++.|.+.+.++.+.
T Consensus       355 ~~~~~gr~gl~---------g~~~tp~~i~~~~~~l~~~  384 (1231)
T 2c42_A          355 PKILAGRYGLG---------SKEFSPAMVKSVYDNMSGA  384 (1231)
T ss_dssp             CEEEEEECCGG---------GCCCCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCC---------CCCCCHHHHHHHHHHhhcC
Confidence            33332321100         0137899999888887653

>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}

Probab=99.70  E-value=5.1e-17  Score=133.87  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh
Q 017513          237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE  316 (370)
Q Consensus       237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~  316 (370)
                      +|+|++||+||+++..|++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+|++. .||+++.|...+.. 
T Consensus        12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~~~-   89 (118)
T 3ju3_A           12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYTGI-   89 (118)
T ss_dssp             SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHHCC-
T ss_pred             CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHcCC-
Confidence            6789999999999999999999999999999999999999999999999999999999999975 69999988765421 


Q ss_pred             ccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          317 SFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       317 ~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                            .++..+...+           ..-+++++|.+.++++++
T Consensus        90 ------~~~~~i~~~~-----------G~~~~~~ei~~~i~~~~~  117 (118)
T 3ju3_A           90 ------DIKNKILKYN-----------GRHMTEDEILKSAKEILN  117 (118)
T ss_dssp             ------CCCCCCCCBT-----------TBCCCHHHHHHHHHHHHH
T ss_pred             ------CceeEEeeeC-----------CeeCCHHHHHHHHHHHhh
Confidence                  1111111110           124899999999999873

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=94.42  E-value=0.83  Score=46.32  Aligned_cols=158  Identities=15%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEE
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE  113 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~  113 (370)
                      .+++..+++.+.|.+..-   +.|+..+.-    ....+.+.+.+ . +.+.+=....|+++..+|.|.|+. |...++.
T Consensus        19 ~~~~~a~~lv~~L~~~GV---~~vfg~PG~----~~~~l~~al~~-~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~   89 (565)
T 2nxw_A           19 SHMKLAEALLRALKDRGA---QAMFGIPGD----FALPFFKVAEE-T-QILPLHTLSHEPAVGFAADAAARYSSTLGVAA   89 (565)
T ss_dssp             CCCBHHHHHHHHHHHTTC---CCEEECCCG----GGHHHHHHHHH-H-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCcCHHHHHHHHHHHcCC---CEEEECCCc----chHHHHHHHHh-C-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEE
Confidence            346777888777765432   223333211    12233444443 2 444445567999999999999998 5433333


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC--cch-HH---HHHHHccCCCcEEEeeCCHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA--QHS-HC---YAAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~--tHs-~~---~~a~~~~iP~~~V~~P~d~~  185 (370)
                      +.+......++.-+.+.  +       ..++||+++... .. ..+.+.  +|+ |.   ...+++.+-.+.. ...+++
T Consensus        90 ~TsGpG~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~  159 (565)
T 2nxw_A           90 VTYGAGAFNMVNAVAGA--Y-------AEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPA  159 (565)
T ss_dssp             ECTTHHHHTTHHHHHHH--H-------HTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTT
T ss_pred             ECCCCCHHHHHHHHHHH--H-------hhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHH
Confidence            33334455555655432  2       268999988621 11 112222  342 22   2478888766543 344555


Q ss_pred             HHHHHHHHHH----hCCCCEEEEecccccC
Q 017513          186 DARGLLKAAI----RDPDPVVFLENELLYG  211 (370)
Q Consensus       186 e~~~~l~~a~----~~~~Pv~i~~~~~l~~  211 (370)
                      ++...++.|+    ..++||+|-.|+....
T Consensus       160 ~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~  189 (565)
T 2nxw_A          160 KAPAEIARVLGAARAQSRPVYLEIPRNMVN  189 (565)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEEEEGGGTT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECChhhhc
Confidence            5555555444    3479999988865433

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=94.36  E-value=0.46  Score=48.15  Aligned_cols=152  Identities=18%  Similarity=0.061  Sum_probs=90.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~  115 (370)
                      ++..+++.+.|.+..-  +.++.+-.+     ....+.+.+.+.  +=|++.+ ..|++++.+|.|.|+. |...++.+.
T Consensus         4 ~~~a~~l~~~L~~~GV--~~vfg~PG~-----~~~~l~~al~~~--~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T   73 (563)
T 2uz1_A            4 ITGGELVVRTLIKAGV--EHLFGLHGA-----HIDTIFQACLDH--DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVT   73 (563)
T ss_dssp             EEHHHHHHHHHHHHTC--CCEEECCCG-----GGHHHHHHHHHH--TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred             cCHHHHHHHHHHHCCC--CEEEECCCC-----chHHHHHHHHhc--CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            4566777777765432  233333211     112333444432  3467765 6999999999999998 543333333


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (370)
                      +......++.-+.+  |+       ..++||+++... .. .-+.|..|. .+..++++.+-.+ .....+++++...++
T Consensus        74 sGpG~~N~~~~l~~--A~-------~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~  143 (563)
T 2uz1_A           74 AGGGFTNAVTPIAN--AW-------LDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVM  143 (563)
T ss_dssp             TTHHHHTTHHHHHH--HH-------HHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHH
T ss_pred             cCccHHHHHHHHHH--HH-------hcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHH
Confidence            33455556666654  22       268999988621 11 112233333 2235899988765 556677888877777


Q ss_pred             HHHh-----CCCCEEEEeccc
Q 017513          193 AAIR-----DPDPVVFLENEL  208 (370)
Q Consensus       193 ~a~~-----~~~Pv~i~~~~~  208 (370)
                      .|++     .++||+|-.|..
T Consensus       144 ~A~~~a~~~~~GPV~l~iP~d  164 (563)
T 2uz1_A          144 QAIRAALSAPRGPVLLDLPWD  164 (563)
T ss_dssp             HHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHhcCCCCceEEEEeCHH
Confidence            7775     259999987765

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=94.25  E-value=0.098  Score=53.59  Aligned_cols=113  Identities=14%  Similarity=-0.014  Sum_probs=73.1

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~t  161 (370)
                      |++- ...|++++.+|.|.|+...|| ++.+.+......++.-|.+  |+       ..++||+++... .. .-+.+..
T Consensus        45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~--A~-------~~~vPll~Itg~~p~~~~g~~~~  114 (590)
T 1v5e_A           45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYD--AA-------MDNIPVVAILGSRPQRELNMDAF  114 (590)
T ss_dssp             EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHH--HH-------HHTCCEEEEEEECCGGGTTTTCT
T ss_pred             eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHH--HH-------hcCCCEEEEcCCCCcccCCCCcc
Confidence            4444 579999999999999995443 3333333455556666654  22       268999988621 11 1122222


Q ss_pred             chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      +..+...+++.+-.+ .+.+.+++++...++.|++    . ++||+| .|...
T Consensus       115 Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv  165 (590)
T 1v5e_A          115 QELNQNPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF  165 (590)
T ss_dssp             TCCCCHHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred             cccCHHHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence            211225789988766 6777888888888887775    3 489999 88654

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=93.56  E-value=0.34  Score=49.29  Aligned_cols=114  Identities=11%  Similarity=-0.042  Sum_probs=73.8

Q ss_pred             CcEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCC-
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGV-  158 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~-  158 (370)
                      =|++. ...|+++..+|-|.|+...|| + +.|.. .....++.-+.+..         ..++||+++...-.  .-+. 
T Consensus        49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsG-pG~~N~~~~v~~A~---------~~~~Pll~itg~~~~~~~~~~  117 (573)
T 2iht_A           49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLG-PGMTNLSTGIATSV---------LDRSPVIALAAQSESHDIFPN  117 (573)
T ss_dssp             CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTT-HHHHHHHHHHHHHH---------HHTCCEEEEEEESCGGGCCTT
T ss_pred             CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccC-chHHHHHHHHHHHH---------hhCCCEEEEcccCcccccCCc
Confidence            35665 469999999999999984444 3 34444 45556667665432         26899998862211  1123 


Q ss_pred             CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      +..|..+..++++.+-.+ .....+++++...++.|++    . ++||+|-.|...
T Consensus       118 ~~~Q~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv  172 (573)
T 2iht_A          118 DTHQCLDSVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL  172 (573)
T ss_dssp             TSTTCCCHHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred             CccccCCHHHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence            334433335899988765 4555677777777777775    2 589999877654

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=93.47  E-value=0.23  Score=50.46  Aligned_cols=153  Identities=13%  Similarity=0.075  Sum_probs=86.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~  115 (370)
                      ++..+++.+.|.+..-   +.|+..+.-    ....+.+.+.+ - .=|++.+ ..|+++..+|.|.|+. |...++.+.
T Consensus        11 ~~~a~~l~~~L~~~GV---~~vfg~PG~----~~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T   80 (566)
T 1ozh_A           11 AHGADLVVSQLEAQGV---RQVFGIPGA----KIDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVT   80 (566)
T ss_dssp             SCHHHHHHHHHHHHTC---CEEEEECCT----TTHHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             CcHHHHHHHHHHHCCC---CEEEEcCCC----chHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            4556777777765432   333333211    11222333332 1 2366665 7999999999999997 543343333


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      +......++.-+.+.  +       ..++||+++...-..  -+.+..|..+..++++.+..+ .+...+++++...++.
T Consensus        81 sGpG~~N~~~~l~~A--~-------~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~  150 (566)
T 1ozh_A           81 SGPGCSNLITGMATA--N-------SEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSN  150 (566)
T ss_dssp             STHHHHTTHHHHHHH--H-------HHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHHH
T ss_pred             cChHHHHHHHHHHHH--H-------hcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHHH
Confidence            334455556665432  2       268999988622111  122333322335899988765 4556677777777777


Q ss_pred             HHh----C-CCCEEEEecccc
Q 017513          194 AIR----D-PDPVVFLENELL  209 (370)
Q Consensus       194 a~~----~-~~Pv~i~~~~~l  209 (370)
                      |++    . ++||+|-.|..+
T Consensus       151 A~~~A~~~r~GPV~l~iP~dv  171 (566)
T 1ozh_A          151 AFRAAEQGRPGSAFVSLPQDV  171 (566)
T ss_dssp             HHHHHHSSSCCEEEEEEEHHH
T ss_pred             HHHHHhcCCCCeEEEEeChhh
Confidence            664    3 599999877553

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=93.11  E-value=0.28  Score=50.11  Aligned_cols=113  Identities=18%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~t  161 (370)
                      |++. ...|++++.+|.|.|+. |...++.+-+......++.-+.+.  +       ..++||+++...-.  .-+.|..
T Consensus        52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~g~~~~  121 (590)
T 1ybh_A           52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADA--L-------LDSVPLVAITGQVPRRMIGTDAF  121 (590)
T ss_dssp             EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHH--H-------HHTCCEEEEEEECCGGGTTTTCT
T ss_pred             cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHH--H-------hhCCCEEEEeCcCCccccCCCcc
Confidence            4554 45999999999999998 544333333334455556665432  2       26899998852111  1123333


Q ss_pred             chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL  208 (370)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~  208 (370)
                      +..+..++++.+-.+ .+...+++++..+++.|++     .++||+|-.|..
T Consensus       122 Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d  172 (590)
T 1ybh_A          122 QETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD  172 (590)
T ss_dssp             TCCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             cccCHHHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence            322335899988776 5666788889888888886     258999987754

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=92.39  E-value=1  Score=46.09  Aligned_cols=151  Identities=14%  Similarity=0.014  Sum_probs=88.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCC-CcEeechhhHHHHHHHHHHHhcc-CCeeEE--
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAYY-GLKPVV--  112 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p-~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~--  112 (370)
                      ++..+++.+.|.+.   .=+.++..+.-    ....+.+.+.+ . + =|++ ....|++++.+|.|.|+. |.+|.+  
T Consensus        27 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~-~-~~i~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~   96 (616)
T 2pan_A           27 MRAVDAAMYVLEKE---GITTAFGVPGA----AINPFYSAMRK-H-GGIRHI-LARHVEGASHMAEGYTRATAGNIGVCL   96 (616)
T ss_dssp             EEHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHH-H-CCCEEE-ECSSHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CcHHHHHHHHHHHC---CCCEEEECCCC----ccHHHHHHHHh-c-CCCcEE-eeCCHHHHHHHHHHHHHhcCCCceEEE
Confidence            34556666665432   23444443311    12233344433 2 3 2455 457999999999999998 556543  


Q ss_pred             EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-C-CCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHH
Q 017513          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G-AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (370)
Q Consensus       113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G-~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (370)
                      .|.. .....++.-|.+..         ..++||+++... . ...+.|..+..+...+++.+-.+.. ...+++++..+
T Consensus        97 ~TsG-pG~~N~~~~l~~A~---------~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~  165 (616)
T 2pan_A           97 GTSG-PAGTDMITALYSAS---------ADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRV  165 (616)
T ss_dssp             ECST-HHHHTSHHHHHHHH---------HTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHH
T ss_pred             eCCC-chHHHHHHHHHHHH---------hcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHH
Confidence            4544 44445566665422         268999988621 1 1112233232222578888876644 55667888888


Q ss_pred             HHHHHhC-----CCCEEEEeccc
Q 017513          191 LKAAIRD-----PDPVVFLENEL  208 (370)
Q Consensus       191 l~~a~~~-----~~Pv~i~~~~~  208 (370)
                      ++.|++.     ++||+|-.|..
T Consensus       166 l~~A~~~A~~~r~GPV~l~iP~d  188 (616)
T 2pan_A          166 LQQAFHLMRSGRPGPVLVDLPFD  188 (616)
T ss_dssp             HHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHHHHhcCCCceEEEEcchh
Confidence            8888762     58999977654

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=92.27  E-value=0.45  Score=48.11  Aligned_cols=112  Identities=14%  Similarity=0.062  Sum_probs=70.1

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~  160 (370)
                      |++.+ ..|+++.-+|-|.|+. |...+ +.|.. .....++.-|.+.  +       ..++||+++...-.  .-+.|.
T Consensus        43 ~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsG-pG~~N~~~gi~~A--~-------~~~vPvl~itg~~~~~~~~~~~  111 (549)
T 3eya_A           43 EWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCG-PGNLHLINGLFDC--H-------RNHVPVLAIAAHIPSSEIGSGY  111 (549)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTT-HHHHTTHHHHHHH--H-------HTTCCEEEEEEESCGGGTTSCC
T ss_pred             eEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCC-CcHhhhHHHHHHH--H-------hhCCCEEEEeCCCchhhcCCCC
Confidence            56654 5999999999999998 54333 33544 4445555665542  2       26899998862211  112333


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~  208 (370)
                      .|..+...+++.+-.+ .....+++++...++.|++    .++||+|-.|..
T Consensus       112 ~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d  162 (549)
T 3eya_A          112 FQETHPQELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD  162 (549)
T ss_dssp             TTCCCHHHHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred             CCccCHHHHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence            3323335788888765 4445566666666666654    579999987754

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=92.23  E-value=2.1  Score=43.37  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCC--
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVG--  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G--  159 (370)
                      |++.+ ..|++++.+|.|.|+. |.-.++.|..| ....++.-+.+  |+       ..++||+++... .. ..+.+  
T Consensus        43 ~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~TsGp-G~~N~~~gia~--A~-------~~~vPll~itg~~~~~~~~~~~~  111 (568)
T 2wvg_A           43 EQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSV-GALSAFDAIGG--AY-------AENLPVILISGAPNNNDHAAGHV  111 (568)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTT-THHHHHHHHHH--HH-------HTTCCEEEEEEECCGGGTTTTCB
T ss_pred             eEecc-CcHHHHHHHHHHHHHhhCCeEEEEeCCC-CHHHHHHHHHH--Hh-------hhCCCEEEEeCCCChhHhccCcc
Confidence            66665 7999999999999977 83334455444 44456666654  23       268999988621 11 11112  


Q ss_pred             Ccch----H--HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017513          160 AQHS----H--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL  209 (370)
Q Consensus       160 ~tHs----~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l  209 (370)
                      .+|.    +  +...+++.+-.+ .+...+++++...++.|++    .++||+|-.|...
T Consensus       112 ~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv  170 (568)
T 2wvg_A          112 LHHALGKTDYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI  170 (568)
T ss_dssp             CTTSCSSSCCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred             eeeeccccchHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence            1231    1  225899988766 4555666666666666554    4699999877653

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=91.76  E-value=0.56  Score=48.86  Aligned_cols=112  Identities=17%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~  160 (370)
                      |++. ...|+++..+|-|.|+. |.. .++.|.. .....++.-|.+..         ..++||+++...-.  .-+.+.
T Consensus       122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsG-pG~~N~~~gia~A~---------~d~vPllvItG~~~~~~~g~~a  190 (677)
T 1t9b_A          122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSG-PGATNVVTPMADAF---------ADGIPMVVFTGQVPTSAIGTDA  190 (677)
T ss_dssp             EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECST-HHHHTTHHHHHHHH---------HHTCCEEEEEEECCTTTTTSCC
T ss_pred             eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCC-hHHHHHHHHHHHHH---------HcCCCEEEEeCCCChhhcCCCC
Confidence            5554 47999999999999998 543 3344444 45555666665432         26899998852111  112233


Q ss_pred             cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL  208 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~  208 (370)
                      .+..+..++++.+-.+. +...+++++...++.|++     .++||+|-.|..
T Consensus       191 ~Q~~Dq~~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~D  242 (677)
T 1t9b_A          191 FQEADVVGISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD  242 (677)
T ss_dssp             TTCCCHHHHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             ccccCHHHHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHH
Confidence            33223357888877664 445678888888888876     368999987754

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=91.38  E-value=2.1  Score=43.35  Aligned_cols=153  Identities=15%  Similarity=0.061  Sum_probs=84.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~  115 (370)
                      ++..+++.+.|.+..   =+.|+..+.-    ....+.+.+.+.- .=|++. ...|++++.+|.|.|+. | ..++.+.
T Consensus         3 ~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~~~-~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~T   72 (566)
T 2vbi_A            3 YTVGMYLAERLVQIG---LKHHFAVAGD----YNLVLLDQLLLNK-DMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVT   72 (566)
T ss_dssp             CBHHHHHHHHHHHHT---CSEEEECCCT----TTHHHHHHHHTCT-TSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred             cCHHHHHHHHHHHcC---CCEEEeCCCC----ccHHHHHHHhcCC-CCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEe
Confidence            455666666665543   2334443311    1122233333221 135555 56999999999999987 8 4444333


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC--cch----H-HH-HHHHccCCCcEEEeeCCHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA--QHS----H-CY-AAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~--tHs----~-~~-~a~~~~iP~~~V~~P~d~~  185 (370)
                      +......++.-|.+  |+       ..++||+++... .. ..+.+.  +|.    + .+ ..+++.+-.+ .+.+.+++
T Consensus        73 sGpG~~N~~~gia~--A~-------~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~  142 (566)
T 2vbi_A           73 FSVGAISAMNALGG--AY-------AENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCA-AESITDAH  142 (566)
T ss_dssp             TTTTHHHHHHHHHH--HH-------HTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSE-EEEECSSS
T ss_pred             CCCCHHHHHHHHHH--HH-------hhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeE-EEEeCCHH
Confidence            33444556666654  22       268999988621 11 112221  231    1 13 5888887655 34445555


Q ss_pred             HHHHHHHHHH----hCCCCEEEEecccc
Q 017513          186 DARGLLKAAI----RDPDPVVFLENELL  209 (370)
Q Consensus       186 e~~~~l~~a~----~~~~Pv~i~~~~~l  209 (370)
                      ++...++.|+    ..++||+|-.|...
T Consensus       143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d~  170 (566)
T 2vbi_A          143 SAPAKIDHVIRTALRERKPAYLDIACNI  170 (566)
T ss_dssp             SHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence            5555555554    34699999877543

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=91.25  E-value=0.29  Score=49.25  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=70.4

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~t  161 (370)
                      |++. ...|++++.+|.|.|+. |...++.+.+......++.-+.+  |+       ..++||+++...-..  -+.+..
T Consensus        40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~--A~-------~~~~Pll~itg~~~~~~~~~~~~  109 (528)
T 1q6z_A           40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN--AW-------NSHSPLIVTAGQQTRAMIGVEAL  109 (528)
T ss_dssp             EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH--HH-------HTTCCEEEEEEECCHHHHTTTCT
T ss_pred             cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH--Hh-------hcCCCEEEEeCCCcccccCCCcc
Confidence            4554 56999999999999998 65555534343445566676654  22       268999988521111  122222


Q ss_pred             ch-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513          162 HS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (370)
Q Consensus       162 Hs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l  209 (370)
                      +. .+..++++.+-.+ ...+.+++++...+..|++    . ++||+|-.|...
T Consensus       110 q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~  162 (528)
T 1q6z_A          110 LTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD  162 (528)
T ss_dssp             TCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred             cccccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence            21 1224788887766 4555666666666666664    3 589999877653

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=89.76  E-value=0.52  Score=48.10  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCe--eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCC-
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLK--PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVG-  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~r--p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G-  159 (370)
                      |++.+ ..|+++..+|-|.|+..-|  .++.|..| ....++.-|.+.  +       ..++||+++...-.  .-+.+ 
T Consensus        45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGp-G~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~~~~~  113 (589)
T 2pgn_A           45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCV-GNLLLHAAMQEA--R-------TGRIPAVHIGLNSDGRLAGRSE  113 (589)
T ss_dssp             TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGG-GGGGCHHHHHHH--H-------HTTCCEEEEEEESCGGGTTCTT
T ss_pred             eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCc-hHHHHHHHHHHH--H-------hcCCCEEEEecCCcccccCCCC
Confidence            56655 7999999999999998433  34445444 444455655432  2       26899998852111  12234 


Q ss_pred             CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENEL  208 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~  208 (370)
                      ..|..+..+ ++.+-.+ .....+++++...++.|++    . ++||+|-.|..
T Consensus       114 ~~Q~~d~~~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  165 (589)
T 2pgn_A          114 AAQQVPWQS-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD  165 (589)
T ss_dssp             CSSCCCGGG-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred             cccccChhh-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence            344322247 8887765 4555677777777777765    2 48999987754

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=89.16  E-value=3.4  Score=41.64  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~  160 (370)
                      |++- ...|+++.-+|-|.|+. |... ++.|.. .....++.-|.+.  +       ..++||+++...-..  -+.|.
T Consensus        48 ~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsG-pG~~N~~~gia~A--~-------~d~vPll~itG~~~~~~~g~~~  116 (556)
T 3hww_A           48 IHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSG-TAVANLYPALIEA--G-------LTGEKLILLTADRPPELIDCGA  116 (556)
T ss_dssp             EEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSS-HHHHTTHHHHHHH--H-------HHCCCEEEEEEECCGGGSSSSC
T ss_pred             eEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCC-cHHHhhhHHHHHH--H-------HhCCCeEEEeCCCCHHHhccCC
Confidence            5665 45899999999999987 6433 344544 4555556655432  2       268999988521111  12233


Q ss_pred             cchHHHHHHHccCCCcEEEee--CC---HHHHHHHHHHHHhC--CCCEEEEecc
Q 017513          161 QHSHCYAAWYASVPGLKVLSP--YS---SEDARGLLKAAIRD--PDPVVFLENE  207 (370)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P--~d---~~e~~~~l~~a~~~--~~Pv~i~~~~  207 (370)
                      .|..+..++++.+-.+....+  .+   ++++..+++.|+..  ++||+|-.|.
T Consensus       117 ~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~  170 (556)
T 3hww_A          117 NQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPF  170 (556)
T ss_dssp             TTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEEC
T ss_pred             CccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCc
Confidence            332222478887776655443  32   35688899999864  5899998775

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=89.01  E-value=0.7  Score=46.86  Aligned_cols=153  Identities=11%  Similarity=-0.018  Sum_probs=87.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCe-eEEE
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVVE  113 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~  113 (370)
                      .++..+++.+.|.+..   =+.|+..+--    ....+.+.+.+ . .=|++.+ ..|+++.-+|-|.|+. |.. .++.
T Consensus         9 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~   78 (568)
T 2c31_A            9 LTDGFHVLIDALKMND---IDTMYGVVGI----PITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLT   78 (568)
T ss_dssp             EEEHHHHHHHHHHHTT---CCEEEECCCT----TTHHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cccHHHHHHHHHHHcC---CCEEEEeCCC----ccHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4566777777766542   2334333211    12223333432 2 2466665 7999999999999998 543 3344


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CC--CCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AG--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG  189 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (370)
                      |.. .....++.-|.+.  +       ..++||+++...-..  -+  .|..+..+...+++.+-.+. +...+++++..
T Consensus        79 TsG-pG~~N~~~~i~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~  147 (568)
T 2c31_A           79 VSA-PGFLNGVTSLAHA--T-------TNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKAS-FRINSIKDIPI  147 (568)
T ss_dssp             CSH-HHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEE-EECCSGGGHHH
T ss_pred             cCC-ccHHHHHHHHHHH--H-------hcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhee-eecCCHHHHHH
Confidence            443 4555666666543  2       268999988521111  01  23333222257888877653 44456666666


Q ss_pred             HHHHHHh-----CCCCEEEEecccc
Q 017513          190 LLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       190 ~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .+..|++     .++||+|-.|..+
T Consensus       148 ~i~~A~~~A~~~~~GPV~l~iP~dv  172 (568)
T 2c31_A          148 GIARAVRTAVSGRPGGVYVDLPAKL  172 (568)
T ss_dssp             HHHHHHHHHHSSSCCEEEEEEETHH
T ss_pred             HHHHHHHHhcCCCCceEEEeCCHHH
Confidence            6666654     4699999877654

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=88.87  E-value=0.95  Score=45.79  Aligned_cols=153  Identities=10%  Similarity=-0.005  Sum_probs=87.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCe-eEEE
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVVE  113 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~  113 (370)
                      .++..+++.+.|.+..   =+.|+..+--    ....+.+.+.+ - .=|++.+ ..|+++.-+|-|.|+. |.- .++.
T Consensus         7 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~   76 (564)
T 2q28_A            7 MTDGMHIIVEALKQNN---IDTIYGVVGI----PVTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICLT   76 (564)
T ss_dssp             EEEHHHHHHHHHHHTT---CCEEEECCCT----TTHHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cCcHHHHHHHHHHHcC---CCEEEECCCc----chHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            3566677766665442   2334443211    12223333432 2 2467666 7999999999999999 543 3334


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--C--CCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG  189 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (370)
                      |.. .....++.-|.+.  +       ..++||+++...-...  +  .|..+..+...+++.+-.+. +...+++++..
T Consensus        77 TsG-pG~~N~~~gi~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~  145 (564)
T 2q28_A           77 VSA-PGFLNGLTALANA--T-------VNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAA-FRVNQPQDLGI  145 (564)
T ss_dssp             CSH-HHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEE-EECCSGGGHHH
T ss_pred             ccC-chHHHHHHHHHHH--H-------hcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhee-eecCCHHHHHH
Confidence            443 4555566666542  2       2689999885211111  1  23333222257888877664 44455666666


Q ss_pred             HHHHHHh-----CCCCEEEEecccc
Q 017513          190 LLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       190 ~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      .++.|++     .++||+|-.|..+
T Consensus       146 ~i~~A~~~A~~~~~GPV~l~iP~dv  170 (564)
T 2q28_A          146 ALARAIRVSVSGRPGGVYLDLPANV  170 (564)
T ss_dssp             HHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred             HHHHHHHHHhcCCCceEEEEcCHHH
Confidence            6666654     4699999877653

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=87.54  E-value=2.2  Score=43.05  Aligned_cols=113  Identities=12%  Similarity=-0.010  Sum_probs=66.5

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC----CCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AGVG  159 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~----~~~G  159 (370)
                      |++. ...|++++.+|.|.|+. | .+++.+.+......++.-+.+.  +       ..++||+++...-..    .+..
T Consensus        44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A--~-------~~~~Pll~itg~~~~~~~~~~~~  112 (563)
T 2vk8_A           44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAGS--Y-------AEHVGVLHVVGVPSISAQAKQLL  112 (563)
T ss_dssp             EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTCC
T ss_pred             eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHHHHH--H-------hhCCCEEEEECCCChHHhhcccc
Confidence            5555 57999999999999987 7 4444433334444566666542  2       268999988521111    0001


Q ss_pred             Ccc------hHHHHHHHccCCCcEEEeeCCHH----HHHHHHHHHHhCCCCEEEEecccc
Q 017513          160 AQH------SHCYAAWYASVPGLKVLSPYSSE----DARGLLKAAIRDPDPVVFLENELL  209 (370)
Q Consensus       160 ~tH------s~~~~a~~~~iP~~~V~~P~d~~----e~~~~l~~a~~~~~Pv~i~~~~~l  209 (370)
                      .+|      .|+...+++.+-.+. ....+++    .+..+++.|...++||+|-.|...
T Consensus       113 ~~~~~g~~~~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~  171 (563)
T 2vk8_A          113 LHHTLGNGDFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL  171 (563)
T ss_dssp             CTTSCSSSCSSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred             cccccCCcchHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence            111      122357888877654 3444544    444455555545699999877654

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=86.99  E-value=1.8  Score=44.29  Aligned_cols=154  Identities=11%  Similarity=0.007  Sum_probs=83.2

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEE-E
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-E  113 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~  113 (370)
                      +++..+++.+.|.+..   =+.|+..+--    ....+.+.+.+.-..=|++.+ ..|+++.-+|-|.|+. |...++ .
T Consensus        10 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~   81 (603)
T 4feg_A           10 NILAGAAVIKVLEAWG---VDHLYGIPGG----SINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFG   81 (603)
T ss_dssp             EEEHHHHHHHHHHHTT---CCEEEECCCG----GGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             eeeHHHHHHHHHHHCC---CCEEEEeCCC----chHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEe
Confidence            4566676666665433   2334433210    112334444432101366654 5999999999999988 543333 3


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (370)
                      |.. .....++.-|.+.  +       ..++||+++...-...  +.+..+..+...+++.+-.+.. ...+++++...+
T Consensus        82 TsG-pG~~N~~~gia~A--~-------~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i  150 (603)
T 4feg_A           82 SAG-PGGTHLMNGLYDA--R-------EDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV-TAVNAATLPHVI  150 (603)
T ss_dssp             CTT-HHHHTTHHHHHHH--H-------HTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEE-ECCCSTTHHHHH
T ss_pred             cCC-chHHHHHHHHHHH--H-------HcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEE-EcCCHHHHHHHH
Confidence            444 4455555655432  2       2689999885211111  2222221111468887765533 344555555555


Q ss_pred             HHHH----hCCCCEEEEeccc
Q 017513          192 KAAI----RDPDPVVFLENEL  208 (370)
Q Consensus       192 ~~a~----~~~~Pv~i~~~~~  208 (370)
                      ..|+    ..++||+|-.|..
T Consensus       151 ~~A~~~A~~~~GPV~l~iP~d  171 (603)
T 4feg_A          151 DEAIRRAYAHQGVAVVQIPVD  171 (603)
T ss_dssp             HHHHHHHHHHTSEEEEEEETT
T ss_pred             HHHHHHHhcCCCCEEEEeChh
Confidence            5444    4579999987754

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=85.36  E-value=3.6  Score=41.90  Aligned_cols=114  Identities=15%  Similarity=0.030  Sum_probs=65.0

Q ss_pred             CcEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCC
Q 017513           84 ERVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG  159 (370)
Q Consensus        84 ~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G  159 (370)
                      =|++.+ ..|+++.-+|-|.|+. |.. .++.|.. .....++.-|.+.  +       ..++||+++...-..  -+.|
T Consensus        70 i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsG-pG~~N~~~gia~A--~-------~~~vPlv~ItG~~~~~~~g~~  138 (604)
T 2x7j_A           70 ISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSG-TAAANFYPAVVEA--H-------YSRVPIIVLTADRPHELREVG  138 (604)
T ss_dssp             CEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSS-HHHHTTHHHHHHH--H-------HHTCCEEEEEEECCGGGSSSC
T ss_pred             ceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECCh-hHHHHHHHHHHHH--h-------hcCCCEEEEeCCCCHHHhCCC
Confidence            366666 6999999999999998 533 3344444 4455555655432  2       268999988621111  1222


Q ss_pred             CcchHHHHHHHccCCCcEEEe--eCC--------HHHHHHHHHHHHh-CCCCEEEEeccc
Q 017513          160 AQHSHCYAAWYASVPGLKVLS--PYS--------SEDARGLLKAAIR-DPDPVVFLENEL  208 (370)
Q Consensus       160 ~tHs~~~~a~~~~iP~~~V~~--P~d--------~~e~~~~l~~a~~-~~~Pv~i~~~~~  208 (370)
                      ..+..+...+++.+-.+....  |.+        +..+..+++.|.. .++||+|-.|..
T Consensus       139 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  198 (604)
T 2x7j_A          139 APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR  198 (604)
T ss_dssp             CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence            222111146777766554333  343        2234444444444 469999987754

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=85.19  E-value=6  Score=39.65  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ++..+++.+.|.+.   .=+.++..+.-    ....+.+.+.+ . ++ |++ ....|++++.+|.|.|+....+++.+.
T Consensus         5 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~-~-~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~t   74 (552)
T 1ovm_A            5 YCVADYLLDRLTDC---GADHLFGVPGD----YNLQFLDHVID-S-PDICWV-GCANELNASYAADGYARCKGFAALLTT   74 (552)
T ss_dssp             CBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHH-C-SSCEEE-ECSSHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             cCHHHHHHHHHHHc---CCCEEEECCCh----hHHHHHHHHhc-C-CCceEE-eeCcHHHHHHHHHHHHHhhCCcEEEEc
Confidence            45666666666543   22344443311    11223333432 2 22 444 466999999999999988335544433


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC----CC------CCCcchHHHHHHHccCCCcEEEeeCCHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AG------VGAQHSHCYAAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~----~~------~G~tHs~~~~a~~~~iP~~~V~~P~d~~  185 (370)
                      +......++.-+.+.  +       ..++||+++...-+.    .+      .|..-.|+...+++.+-.+....+.  +
T Consensus        75 sGpG~~N~~~gv~~A--~-------~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~--~  143 (552)
T 1ovm_A           75 FGVGELSAMNGIAGS--Y-------AEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE--Q  143 (552)
T ss_dssp             TTHHHHHTHHHHHHH--H-------HTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT--T
T ss_pred             cCCcHHHHHHHHHHH--h-------hhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc--c
Confidence            334445556666532  2       268999988521110    00      1110012234788887766555544  4


Q ss_pred             HHHHHHHH----HHhCCCCEEEEecccc
Q 017513          186 DARGLLKA----AIRDPDPVVFLENELL  209 (370)
Q Consensus       186 e~~~~l~~----a~~~~~Pv~i~~~~~l  209 (370)
                      ++...++.    |...++||+|-.|...
T Consensus       144 ~~~~~i~~A~~~a~~~~GPV~l~iP~d~  171 (552)
T 1ovm_A          144 NACYEIDRVLTTMLRERRPGYLMLPADV  171 (552)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence            44444444    4444699999877643

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=84.47  E-value=5.7  Score=40.23  Aligned_cols=113  Identities=15%  Similarity=0.079  Sum_probs=64.5

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~t  161 (370)
                      |++.+ ..|+++.-+|-|.|+. |...++.+.+......++.-|.+.  +       ..++||+++...-..  -+.|..
T Consensus        51 ~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A--~-------~d~vPll~itG~~p~~~~g~~~~  120 (578)
T 3lq1_A           51 KIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEA--N-------LSQIPLIVLTADRPHELRNVGAP  120 (578)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHHH--H-------HTTCCEEEEEEECCGGGTTSSCT
T ss_pred             eEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHHH--H-------hcCCCeEEEeCCCCHHhhcCCCC
Confidence            66665 4999999999999988 543333333334455555655432  2       368999988521111  122333


Q ss_pred             chHHHHHHHccCCCcEEE--eeCCHHH----HHHHHHHHH----hC-CCCEEEEecc
Q 017513          162 HSHCYAAWYASVPGLKVL--SPYSSED----ARGLLKAAI----RD-PDPVVFLENE  207 (370)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~--~P~d~~e----~~~~l~~a~----~~-~~Pv~i~~~~  207 (370)
                      |..+...+++.+-.+...  .|.+..+    +...++.|+    .. ++||+|-.|.
T Consensus       121 Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~  177 (578)
T 3lq1_A          121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL  177 (578)
T ss_dssp             TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred             CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence            321224677776554433  4555333    223444444    33 7999998775

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=84.25  E-value=1.9  Score=44.89  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhc-CCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc
Q 017513           41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT  116 (370)
Q Consensus        41 ~a~~~~L~~l~~~-~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~  116 (370)
                      ..+.+.|.+.+.. .++++ ++.|++.. ..+  ...+..-..|.+|+..|.  +=-..+++|.|++++. -+++++...
T Consensus       464 ~~v~~~L~~~l~~~~~~~i-v~~~vg~~-~~~--~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~G  539 (677)
T 1t9b_A          464 QTVIKKLSKVANDTGRHVI-VTTGVGQH-QMW--AAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDG  539 (677)
T ss_dssp             HHHHHHHHHHHHTTCSCEE-EEECSSHH-HHH--HHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCCCEE-EEeCCchH-HHH--HHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEe
Confidence            3456667666654 33444 45565411 011  011111112778888764  1222677888888763 355555544


Q ss_pred             chHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC----------CC--CCCc-chHHHHHHHccCCCcEEEe
Q 017513          117 FNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA----------AG--VGAQ-HSHCYAAWYASVPGLKVLS  180 (370)
Q Consensus       117 ~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~----------~~--~G~t-Hs~~~~a~~~~iP~~~V~~  180 (370)
                       +.. +..+..+ ..++        ..++|++++.  .+|..          ..  .+.. +..++..+.+.. |+..+.
T Consensus       540 -DGsf~~~~~eL-~ta~--------~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~  608 (677)
T 1t9b_A          540 -DASFNMTLTEL-SSAV--------QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLR  608 (677)
T ss_dssp             -HHHHHHHGGGH-HHHH--------HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEE
T ss_pred             -ehHHhccHHHH-HHHH--------HhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEE
Confidence             443 2223332 2333        3567765554  33321          01  1111 222334455554 677778


Q ss_pred             eCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          181 PYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       181 P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ..+.+|+...++++++.++|++|-
T Consensus       609 v~~~~el~~al~~a~~~~gp~lIe  632 (677)
T 1t9b_A          609 VKKQEELDAKLKEFVSTKGPVLLE  632 (677)
T ss_dssp             ECSHHHHHHHHHHHHHCSSCEEEE
T ss_pred             ECCHHHHHHHHHHHHHCCCcEEEE
Confidence            899999999999999989999884

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=84.07  E-value=5.5  Score=40.17  Aligned_cols=151  Identities=13%  Similarity=0.033  Sum_probs=81.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~  115 (370)
                      ++..+++.+.|.+.   .=+.++..+.-    ....+.+.+.+. ..=|++. ...|++++.+|.|.|+. | ..++.+.
T Consensus        25 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~~-~~i~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~t   94 (570)
T 2vbf_A           25 YTVGDYLLDRLHEL---GIEEIFGVPGD----YNLQFLDQIISR-EDMKWIG-NANELNASYMADGYARTKK-AAAFLTT   94 (570)
T ss_dssp             CBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHHC-SSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred             CCHHHHHHHHHHHc---CCCEEEECCCc----chHHHHHHHhcC-CCCeEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEc
Confidence            45666666666543   22344443311    112223333322 1124444 56999999999999965 8 4444333


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC---CCCCC-cch------HHHHHHHccCCCcEEEeeCCHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---AGVGA-QHS------HCYAAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~---~~~G~-tHs------~~~~a~~~~iP~~~V~~P~d~~  185 (370)
                      +......++.-+.+.  +       ..++||+++...-..   +.+.. +|.      +....+++.+..+....+ + +
T Consensus        95 sGpG~~N~~~gi~~A--~-------~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~  163 (570)
T 2vbf_A           95 FGVGELSAINGLAGS--Y-------AENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-E  163 (570)
T ss_dssp             TTHHHHHHHHHHHHH--H-------HTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-T
T ss_pred             CCCCHHHHHHHHHHH--h-------hhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-c
Confidence            434555566666532  2       268999988521111   00111 120      112478888876655444 3 6


Q ss_pred             HHHHHHHHHHh----CCCCEEEEeccc
Q 017513          186 DARGLLKAAIR----DPDPVVFLENEL  208 (370)
Q Consensus       186 e~~~~l~~a~~----~~~Pv~i~~~~~  208 (370)
                      ++...++.|++    .++||+|-.|..
T Consensus       164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d  190 (570)
T 2vbf_A          164 NATYEIDRVLSQLLKERKPVYINLPVD  190 (570)
T ss_dssp             THHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred             cHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence            66556655554    469999987754

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=83.23  E-value=2.1  Score=32.49  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCCh-HHHHHHH
Q 017513          239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGV-GAEICAS  312 (370)
Q Consensus       239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGl-g~~i~~~  312 (370)
                      ++|+|.+. +....|..|.+.|+++||..+.+|+..    |.+...+..+.     +=+.|++.++...+|+ .++|.+.
T Consensus         4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~   78 (92)
T 2lqo_A            4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK   78 (92)
T ss_dssp             SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred             CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence            35666664 566778888899999999999999874    45544333332     2256777665554554 3567777


Q ss_pred             HHhh
Q 017513          313 VIEE  316 (370)
Q Consensus       313 l~~~  316 (370)
                      |.+.
T Consensus        79 L~el   82 (92)
T 2lqo_A           79 LVKI   82 (92)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d2ozlb1	192	c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh	3e-61
d1qs0b1	204	c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase	7e-59
d1w85b1	192	c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta,	6e-57
d1ik6a1	191	c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh	2e-50
d2bfdb1	203	c.36.1.7 (B:2-204) Branched-chain alpha-keto acid	2e-49
d1umdb1	186	c.36.1.7 (B:2-187) Branched-chain alpha-keto acid	4e-44
d2ozlb2	138	c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d	5e-33
d1umdb2	137	c.48.1.2 (B:188-324) Branched-chain alpha-keto aci	2e-32
d1qs0b2	134	c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas	2e-32
d1w85b2	132	c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet	7e-31
d2bfdb2	138	c.48.1.2 (B:205-342) Branched-chain alpha-keto aci	9e-31
d1ik6a2	135	c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d	2e-27
d2c42a3	157	c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu	2e-08
d2r8oa1	195	c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul	0.002

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (491), Expect = 3e-61
 Identities = 122/191 (63%), Positives = 150/191 (78%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E 
Sbjct: 2   LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA
Sbjct: 62  GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           +AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181

Query: 215 PVSAEVLDSSF 225
               E     F
Sbjct: 182 EFPPEAQSKDF 192

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

 Score =  187 bits (476), Expect = 7e-59
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180

Query: 213 SFPVSAEVLDSSFCLPIGK--AKIEREG 238
            F    +        P  K       +G
Sbjct: 181 PF----DGHHDRPVTPWSKHPHSAVPDG 204

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  182 bits (462), Expect = 6e-57
 Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 3/194 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY     
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178

Query: 216 VSAEVLDSSFCLPI 229
              EV +  + +PI
Sbjct: 179 FRQEVPEGEYTIPI 192

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  165 bits (418), Expect = 2e-50
 Identities = 77/180 (42%), Positives = 108/180 (60%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           +  V    + +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP
Sbjct: 2   AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 61

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           + E G  G  +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R 
Sbjct: 62  LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 121

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           P G+    G  HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 2e-49
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 30  YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89
                ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +T
Sbjct: 13  EYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNT 71

Query: 90  PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVF- 148
           P+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  
Sbjct: 72  PLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTI 131

Query: 149 RGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENEL 208
           R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++
Sbjct: 132 RSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKI 191

Query: 209 LY---GESFPV 216
           LY    E  P+
Sbjct: 192 LYRAAAEEVPI 202

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

 Score =  148 bits (375), Expect = 4e-44
 Identities = 80/176 (45%), Positives = 114/176 (64%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA 
Sbjct: 2   LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G  
Sbjct: 62  IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYG 211
              G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY 
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 5e-33
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286
           +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI AS
Sbjct: 2   IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEAS 61

Query: 287 VRKTNRLVTVEEGFPQHGVGAEICASVI-EESFGYLDAPVERIAGADVPMPYAANLERMA 345
           V KTN LVTVE G+PQ GVGAEICA ++   +F +LDAP  R+ GADVPMPYA  LE  +
Sbjct: 62  VMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNS 121

Query: 346 VPQVEDIVRAAKRACY 361
           +PQV+DI+ A K+   
Sbjct: 122 IPQVKDIIFAIKKTLN 137

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  116 bits (291), Expect = 2e-32
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   + 
Sbjct: 2   YTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVM 61

Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
            SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++
Sbjct: 62  NSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKL 119

Query: 345 AVPQVEDIVRAAKRA 359
            +P V  I+ AAKRA
Sbjct: 120 YLPTVTRILNAAKRA 134

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

 Score =  116 bits (291), Expect = 2e-32
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + +P+ KA I R G DV++  +   V ++        + G+ AEVI+LRS+ PLD  TI 
Sbjct: 2   YTVPLDKAAITRPGNDVSVLTYGTTVYVAQ---VAAEESGVDAEVIDLRSLWPLDLDTIV 58

Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
            SV+KT R V V E     G GAE+ + V E  F +L+AP+ER+ G D P P+A   E  
Sbjct: 59  ESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA--QEWA 116

Query: 345 AVPQVEDIVRAAKR 358
             P    +  A K+
Sbjct: 117 YFPGPSRVGAALKK 130

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  112 bits (280), Expect = 7e-31
 Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 1/129 (0%)

Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289
           GKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV K
Sbjct: 1   GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEK 60

Query: 290 TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349
           T R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  
Sbjct: 61  TGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNF 119

Query: 350 EDIVRAAKR 358
           +D++  AK+
Sbjct: 120 KDVIETAKK 128

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 9e-31
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI-LAKEGISAEVINLRSIRPLDRSTI 283
           + +P+ +A++ +EG DVT+ A+   V +  + A +   K G+S EVI+LR+I P D  TI
Sbjct: 2   YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61

Query: 284 NASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLER 343
             SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+    E 
Sbjct: 62  CKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--FEP 119

Query: 344 MAVPQVEDIVRAAKR 358
             +P       A ++
Sbjct: 120 FYIPDKWKCYDALRK 134

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + + IGKA++ REG DVT+  +  +V  +L+AAE +       EV++L+++ PLD  T+ 
Sbjct: 2   YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVKASV---EVVDLQTLNPLDFDTVL 58

Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
            SV KT RL+   +     G+GAE+ A V E++   L APV R+AG DVP    A  +  
Sbjct: 59  KSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADAA 117

Query: 345 AVPQVEDIVRAAKR 358
             P VE I++A + 
Sbjct: 118 YAPTVERIIKAIEY 131

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 14/91 (15%), Positives = 33/91 (36%)

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           +  I +         +    LA +G    +I +R  RP       A++  + +++TV + 
Sbjct: 12  ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71

Query: 300 FPQHGVGAEICASVIEESFGYLDAPVERIAG 330
             + G   +     +  +F      + +I  
Sbjct: 72  TKEPGAPGDPLYLDVCSAFVERGEAMPKILA 102

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/166 (12%), Positives = 38/166 (22%), Gaps = 9/166 (5%)

Query: 40  REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99
           R+A  +A++      P+      ++             + +      +   + E G T I
Sbjct: 26  RKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAI 85

Query: 100 GVGA-AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV 158
             G   + G  P                 +            Q  V +      G     
Sbjct: 86  ANGISLHGGFLPYTSTFLMFVEYARNAVRMA-------ALMKQRQVMVYTHDSIGLGEDG 138

Query: 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD-PVVF 203
                    A     P +    P    ++    K  +   D P   
Sbjct: 139 PTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1qs0b1	204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	100.0
d2ozlb1	192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d1umdb1	186	Branched-chain alpha-keto acid dehydrogenase, Pyr	100.0
d1w85b1	192	Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d	100.0
d1ik6a1	191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d2bfdb1	203	Branched-chain alpha-keto acid dehydrogenase, Pyr	100.0
d1itza2	192	Transketolase (TK), Pyr module {Maize (Zea mays) [	100.0
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	100.0
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	100.0
d2r8oa1	195	Transketolase (TK), Pyr module {Escherichia coli [	100.0
d2bfdb2	138	Branched-chain alpha-keto acid dehydrogenase {Huma	99.97
d1umdb2	137	Branched-chain alpha-keto acid dehydrogenase {Ther	99.96
d2ozlb2	138	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.96
d1w85b2	132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	99.96
d1ik6a2	135	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.96
d1qs0b2	134	2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu	99.95
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	99.73
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	99.65
d1r9ja3	143	Transketolase (TK), C-domain {Leishmania mexicana	99.48
d2c42a3	157	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	99.44
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	99.35
d2ieaa3	186	Pyruvate dehydrogenase E1 component, C-domain {Esc	98.6
d2ieaa1	230	Pyruvate dehydrogenase E1 component, Pyr module {E	98.57
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	98.57
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	96.64
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	96.54
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	96.37
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	96.36
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	96.2
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	95.93
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	95.79
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	95.73
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	95.27
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	94.88
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	94.42
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	94.25
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	93.08
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	92.83
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	89.77
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	89.21
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	88.83
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	84.27
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.18

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3.7e-46  Score=333.35  Aligned_cols=201  Identities=35%  Similarity=0.592  Sum_probs=184.3

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~  113 (370)
                      .+.+++++|++++|.+++++|++++++++|+++.+|+|+.+.+|.++|+|+|++|+||+|++++|+|+|||++|+|||++
T Consensus         2 ~~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve   81 (204)
T d1qs0b1           2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE   81 (204)
T ss_dssp             EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEE
Confidence            35789999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      +++++|+.+|+|||+|++|+++||++++.++|++++.++|...+.|++|||+++++|+++||++|++|+|+.|++.++++
T Consensus        82 ~~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~  161 (204)
T d1qs0b1          82 IQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA  161 (204)
T ss_dssp             CSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999987666666789999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCc--eEEeeeC
Q 017513          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK--AKIEREG  238 (370)
Q Consensus       194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk--~~vl~~g  238 (370)
                      |+++++||+++++|.+|+.+    .+++.+.+..|+|+  +.++++|
T Consensus       162 a~~~~~Pvi~~e~k~ly~~~----~~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         162 SIECDDPVIFLEPKRLYNGP----FDGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHHSSSCEEEEEEGGGSSSC----CCSCSSSCCCCSTTSTTCEEESS
T ss_pred             HHhCCCcEEEEeeHHHhCCC----ccCCCccCCCCcccCccccCCCC
Confidence            99999999999999999864    23444555667776  5666654

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-44  Score=317.37  Aligned_cols=179  Identities=66%  Similarity=1.136  Sum_probs=172.0

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t  114 (370)
                      .++++++|++++|.+.+++|++++++++|+++.+|+++.+.++.++|+|+|++|+||+|++++|+|+|+|++|+|||+++
T Consensus         2 ~~it~~eAi~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~gl~~~fg~~Rv~dtPisE~~~~G~a~G~A~~G~rPive~   81 (192)
T d2ozlb1           2 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF   81 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeeHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccccchhhhcccceEEecccchhHHHHHHHHHHhcCCceEEEE
Confidence            46899999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (370)
                      ++++|+++++|||+|++++++||++|+.++||+++.+.|..++.|++|||+++++|+++||++|++|+|+.|++.++++|
T Consensus        82 ~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~~~~~~~~~~PGl~Vv~Ps~p~da~gll~~A  161 (192)
T d2ozlb1          82 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA  161 (192)
T ss_dssp             SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCcccccccchHHhhccCCceEEEecCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987766778999999999999999999999999999999999999


Q ss_pred             HhCCCCEEEEecccccCCC
Q 017513          195 IRDPDPVVFLENELLYGES  213 (370)
Q Consensus       195 ~~~~~Pv~i~~~~~l~~~~  213 (370)
                      +++++||+++++|.+|+.+
T Consensus       162 i~~~~Pvi~~E~k~ly~~~  180 (192)
T d2ozlb1         162 IRDNNPVVVLENELMYGVP  180 (192)
T ss_dssp             HHSSSCEEEEECHHHHTCE
T ss_pred             HhCCCCEEEEEcHHHhCCC
Confidence            9999999999999999853

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-43  Score=314.50  Aligned_cols=177  Identities=45%  Similarity=0.773  Sum_probs=166.2

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      .+++++|++++|.+++++|++++++++|+++.+|+|+.+.++.++|+|+||+|+||+||+++|+|+|||++|+|||++++
T Consensus         2 ~~t~~~Ai~~al~e~m~~d~~v~~~g~Dv~~~gg~~~~~~~~~~~~~p~R~~~~pIaE~~~ig~a~G~A~~G~~Piv~~~   81 (186)
T d1umdb1           2 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ   81 (186)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             eehHHHHHHHHHHHHHHhCcCEEEEecCcCCCCCcccccHHHHHhcCcceeeecccchhhhhhhHHHHHhccCceeEEEe
Confidence            36899999999999999999999999999988888887778777777999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (370)
                      +++|++|++|||+|++|+++|+++|..+.|++++.+.|...+.+++|+++++++++++||++|++|+|+.|++.++++|+
T Consensus        82 ~~~f~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~~~G~~~~g~~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~l~~a~  161 (186)
T d1umdb1          82 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAI  161 (186)
T ss_dssp             SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHH
T ss_pred             ecchhhhhHHHHHHhHHHhccccCceeeeeeeeeccccccCCCccccccCHHHHhhhccceeeeecCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998766665667778899999999999999999999999999999999


Q ss_pred             hCCCCEEEEecccccCC
Q 017513          196 RDPDPVVFLENELLYGE  212 (370)
Q Consensus       196 ~~~~Pv~i~~~~~l~~~  212 (370)
                      ++++|+||+++|.+|+.
T Consensus       162 ~~~~Pv~i~e~k~ly~~  178 (186)
T d1umdb1         162 RDEDPVVFLEPKRLYRS  178 (186)
T ss_dssp             HCSSCEEEEEEGGGSSS
T ss_pred             hCCCcEEEEechHHhcc
Confidence            99999999999999874

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.2e-43  Score=309.73  Aligned_cols=190  Identities=38%  Similarity=0.696  Sum_probs=178.4

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ++++++|++++|.+.+++|++++++++|++..+|+|+.+.+|.++|+|+|++|+||+|++++|+|.|+|+.|+||+++.+
T Consensus         2 ~~t~~~Ai~~al~~~m~~d~~v~i~GedV~~~GGvf~~t~GL~~~fG~~Rv~dtPisE~~~~G~a~G~Al~G~rpIve~~   81 (192)
T d1w85b1           2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (192)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             ceeHHHHHHHHHHHHHhhCCCEEEEecCCCccCcccccchhhHhhhhhheeecccccccchHHHHHHHHhccCceEEEEE
Confidence            47899999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (370)
                      +.+|+..++|||.|++|+++||++|+.++|+|++.+.|..++.|++|||+.+++|.++||++|++|+++.|++.+++.|+
T Consensus        82 ~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g~~HSqs~e~~f~~~PGlkVv~Ps~p~Da~gll~~Ai  161 (192)
T d1w85b1          82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI  161 (192)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred             eccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCccccccCHHHHhhcCCCeeEEeeCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998867767789999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEecccccCCCCCCcccccCCCcccc
Q 017513          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLP  228 (370)
Q Consensus       196 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~  228 (370)
                      ++++||+++++|.+|+.   ...++|+++|.+|
T Consensus       162 ~~~~Pvi~~E~k~ly~~---~~~~vp~~~y~iP  191 (192)
T d1w85b1         162 RDNDPVIFLEHLKLYRS---FRQEVPEGEYTIP  191 (192)
T ss_dssp             HSSSCEEEEEETTTSSS---CCEECCSSCCCCC
T ss_pred             hCCCCEEEEEcHHHhhc---CCCCCCCCCcCCC
Confidence            99999999999999974   2346676677655

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.7e-43  Score=311.41  Aligned_cols=177  Identities=43%  Similarity=0.730  Sum_probs=142.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~  115 (370)
                      ..++++|++++|.+++++|++++++++|++..+|+|+.+.+|.++|+|+|++|+||+|++++|+|+|||++|+||+++++
T Consensus         7 ~~~~~~Ai~~Al~e~m~~d~~v~~~GeDv~~~Gg~f~~t~gL~~kfg~~Rv~dtpIsE~~~~G~a~GlA~~G~rPive~~   86 (191)
T d1ik6a1           7 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQ   86 (191)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCeeecchhHHHHhhhheeeccccchhHHHHHHHHHHHhcCceEEEEE
Confidence            45799999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (370)
                      +++|+.+++|||+|++++++||++|+.++|++++.+.|..++.|++|+++++++|+++||++|++|+|+.|++.+++.|+
T Consensus        87 ~~df~~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~gg~~Hs~~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~al  166 (191)
T d1ik6a1          87 FVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAI  166 (191)
T ss_dssp             CC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHHHH
T ss_pred             ecchhHHHHHHHHHHHHHHHHhcCCccccccceeecccCCCCCcccccCCHHHHHHHhhcccEEecCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998767666678999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEecccccCC
Q 017513          196 RDPDPVVFLENELLYGE  212 (370)
Q Consensus       196 ~~~~Pv~i~~~~~l~~~  212 (370)
                      ++++||+++++|.+|+.
T Consensus       167 ~~~~Pv~~~e~k~ly~~  183 (191)
T d1ik6a1         167 RGDDPVVFLEPKILYRA  183 (191)
T ss_dssp             HSSSCEEEEEEGGGSSC
T ss_pred             hCCCcEEEEEcHHHhCC
Confidence            99999999999999974

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-42  Score=304.81  Aligned_cols=178  Identities=34%  Similarity=0.620  Sum_probs=165.4

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~  113 (370)
                      .+++++++|++++|.+.+++|++++++++|++ .+|+|+.+.+|.++|+|+|++|+||+|++++|+|+|||++|+||+++
T Consensus        17 ~~~~~~~~Ai~~al~~~m~~d~~v~~~GedV~-~GGvf~~t~gL~~kfG~~Rv~dtPIsE~~~~G~a~G~A~~G~rPive   95 (203)
T d2bfdb1          17 TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE   95 (203)
T ss_dssp             EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eeeeeHHHHHHHHHHHHHhhCCCEEEEecCcC-CCCccccchhhhhhhhhhheeccccccceecchhhhhhhcccceEEE
Confidence            67889999999999999999999999999997 68899999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (370)
                      +++.+|+.+|+|||.|++++++||++|+.++|++++. ..|..+..|++|||+++++|+++||++|++|+|+.|++.+++
T Consensus        96 ~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq~~~~~~~~~PGl~Vv~Ps~p~Da~gll~  175 (203)
T d2bfdb1          96 IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL  175 (203)
T ss_dssp             CSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHH
T ss_pred             EEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccccHHHHHcCCCCcEEEecCCHHHHHHHHH
Confidence            9999999999999999999999999999888766554 333333446789999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEecccccCC
Q 017513          193 AAIRDPDPVVFLENELLYGE  212 (370)
Q Consensus       193 ~a~~~~~Pv~i~~~~~l~~~  212 (370)
                      .|+++++||+++++|.||+.
T Consensus       176 ~ai~~~~Pvi~~E~k~Ly~~  195 (203)
T d2bfdb1         176 SCIEDKNPCIFFEPKILYRA  195 (203)
T ss_dssp             HHHHSSSCEEEEEEGGGTTS
T ss_pred             HHHhCCCcEEEEeeHHHhcC
Confidence            99999999999999999974

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=8.7e-35  Score=257.14  Aligned_cols=171  Identities=15%  Similarity=0.173  Sum_probs=144.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc--ccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY--KISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (370)
Q Consensus        27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~--~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA  104 (370)
                      .+.|..+++..++|++|+++|.++++++|+++++++|++.++++.  +....+.++| |+||||+||+||+|+++|+|||
T Consensus         9 lp~~~~~~~~~AtR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~-p~r~i~~GIaEq~m~~iAaGlA   87 (192)
T d1itza2           9 LPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIA   87 (192)
T ss_dssp             SCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHH
T ss_pred             CcccCCCCCCchHHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccc-hhccceeceecchHHHHHHHHH
Confidence            467777778899999999999999999999999999998554431  1123355668 9999999999999999999999


Q ss_pred             c--cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEE
Q 017513          105 Y--YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVL  179 (370)
Q Consensus       105 ~--~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~  179 (370)
                      +  .|++||+.||+ .|++|+.+|+++. ++        +++|+++++. +|. .+.+|+|| ..+|+++||++|||+|+
T Consensus        88 ~~~~G~~p~~~tf~-~F~~~~~~~~~~~-~~--------~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~  157 (192)
T d1itza2          88 LHSPGFVPYCATFF-VFTDYMRGAMRIS-AL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML  157 (192)
T ss_dssp             TTCTTCEEEEEEEG-GGHHHHHHHHHHH-HH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEE
T ss_pred             HhcCCCEEEEEEEh-hhhhhccchhhhh-cc--------ccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEE
Confidence            8  48999999987 7899999999865 43        6788888774 454 56799998 45779999999999999


Q ss_pred             eeCCHHHHHHHHHHHHh-CCCCEEEEeccc
Q 017513          180 SPYSSEDARGLLKAAIR-DPDPVVFLENEL  208 (370)
Q Consensus       180 ~P~d~~e~~~~l~~a~~-~~~Pv~i~~~~~  208 (370)
                      .|+|+.|+..++++++. .++|+|||.+|.
T Consensus       158 ~P~d~~e~~~~~~~a~~~~~gP~yiRl~R~  187 (192)
T d1itza2         158 RPADGNETAGAYKVAVLNRKRPSILALSRQ  187 (192)
T ss_dssp             CCCSHHHHHHHHHHHHHCTTSCEEEEECSS
T ss_pred             ecCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            99999999999999986 579999997754

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=100.00  E-value=1.5e-34  Score=254.82  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=137.7

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc---cchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCe
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK---ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK  109 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~---~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~r  109 (370)
                      .+.+.+|++++++|.++++++|++|++++|++.++.+..   -..+|.++++|+||||+||+||||+++|+|+|+. |++
T Consensus        11 ~~~iaTR~a~g~~L~~l~~~~p~iv~~sADL~~St~t~~~~~~~~~f~~~~~~~r~i~~GIaEqnm~~iAaGla~~~g~~   90 (190)
T d1r9ja1          11 SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGII   90 (190)
T ss_dssp             CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred             CCCccHHHHHHHHHHHHHhhCcceEeeccccCccccccccccccccccccCCCCCeeeeccchhhHHHHHHHHHHcCCcc
Confidence            566789999999999999999999999999985543311   1124566664779999999999999999999975 799


Q ss_pred             eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHH
Q 017513          110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED  186 (370)
Q Consensus       110 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e  186 (370)
                      ||++||+ +|++|+++|+|++..         +++||++++. +|. .+.+|+|| +.+|+++||.+||++|+.|+|..|
T Consensus        91 p~~~t~~-~F~~r~~~~ir~~~~---------~~~~v~~v~~~~g~~~g~dG~THq~ieDla~~R~iPn~~V~~PaD~~E  160 (190)
T d1r9ja1          91 PFGGTFL-NFIGYALGAVRLAAI---------SHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTE  160 (190)
T ss_dssp             EEEEEEG-GGGGGGHHHHHHHHH---------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHH
T ss_pred             eEEecch-hhhccchHHHHHhcc---------cCCceEEEEecCccccCCCCcchhHHHHHHHHHhcCCEEEEecCCHHH
Confidence            9999975 889999999997653         4678888774 565 56799998 567899999999999999999999


Q ss_pred             HHHHHHHHHhC-CCCEEEEecc
Q 017513          187 ARGLLKAAIRD-PDPVVFLENE  207 (370)
Q Consensus       187 ~~~~l~~a~~~-~~Pv~i~~~~  207 (370)
                      +..++++|++. ++|+|||.+|
T Consensus       161 ~~~al~~a~~~~~gP~yiRl~R  182 (190)
T d1r9ja1         161 TSGAWAVALSSIHTPTVLCLSR  182 (190)
T ss_dssp             HHHHHHHHHHCTTCCEEEECCS
T ss_pred             HHHHHHHHHHcCCCCEEEEecC
Confidence            99999999864 7999999765

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=255.08  Aligned_cols=172  Identities=17%  Similarity=0.239  Sum_probs=145.3

Q ss_pred             CCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-------ccchhHHHHhCCCcEeechhhHHHHHH
Q 017513           26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-------KISKGLLEKYGPERVLDTPITEAGFTG   98 (370)
Q Consensus        26 ~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-------~~~~~~~~~~~p~r~~~~GIaE~~~v~   98 (370)
                      ..|+|+..++.+.+|++++++|.++++++|+++++++|++.++++.       .....|+++| |+||||+||+||+|++
T Consensus         8 ~lp~~~~~~~~~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~-p~R~i~~GIaEq~m~~   86 (197)
T d1gpua2           8 KLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGA   86 (197)
T ss_dssp             GSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHH
T ss_pred             hCcccCCCCCCcchHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCC-CCceeecccchhhHHH
Confidence            3578877678899999999999999999999999999997544331       1112356678 9999999999999999


Q ss_pred             HHHHHhccC--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccC
Q 017513           99 IGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASV  173 (370)
Q Consensus        99 ~A~GlA~~G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~i  173 (370)
                      +|+|||++|  ++|++.+++ .|+.|+++|+++. ++        +++||++++. +|. .+.+|+|| +.+|+++||++
T Consensus        87 iaaGlA~~G~~~~p~~~t~~-~f~~~~~~~~~~~-~~--------~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~i  156 (197)
T d1gpua2          87 IMNGISAFGANYKPYGGTFL-NFVSYAAGAVRLS-AL--------SGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL  156 (197)
T ss_dssp             HHHHHHHHCTTCEEEEEEEH-HHHGGGHHHHHHH-HH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTS
T ss_pred             HHHHHHHcCCceeEEEEeeh-hhhhhhHHHHHHh-hh--------cCCceEEEEecccccccccccchhhHHHHHHHhcC
Confidence            999999999  699999986 7888999998864 54        5788888874 565 46699998 56789999999


Q ss_pred             CCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEeccc
Q 017513          174 PGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENEL  208 (370)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~  208 (370)
                      ||++|+.|+|+.|+..++++++++ ++|+|||.+|.
T Consensus       157 Pn~~v~~PaD~~e~~~a~~~a~~~~~gP~yiRl~R~  192 (197)
T d1gpua2         157 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQ  192 (197)
T ss_dssp             SSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSS
T ss_pred             CCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence            999999999999999999999976 68999997653

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-33  Score=249.09  Aligned_cols=164  Identities=15%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV  111 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~  111 (370)
                      +.++.+|++++++|..+++..|+++..++||..++++. +....|.++| |+||||+||+||+|+++|+|||++ |++|+
T Consensus        20 ~~~~ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~~~-p~r~i~~GIaEq~M~~iAaGlA~~g~~~p~   98 (195)
T d2r8oa1          20 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY   98 (195)
T ss_dssp             CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred             CCCcchHHHHHHHHHHHHhhcccceecccccccccccccccccccccCC-CCCeeeeeeehhhHHHHHHHHHhhCCceEE
Confidence            55778999999999999999999999999998665542 1234577888 999999999999999999999886 68899


Q ss_pred             EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHH
Q 017513          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDAR  188 (370)
Q Consensus       112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~  188 (370)
                      +++|+ +|+.|+++|||++++         ++.++++++ .+|. .|.+|+|| ..+|+++||++|||+|+.|+|+.|+.
T Consensus        99 ~stf~-~f~~~~~~~ir~~~~---------~~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~P~D~~E~~  168 (195)
T d2r8oa1          99 TSTFL-MFVEYARNAVRMAAL---------MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESA  168 (195)
T ss_dssp             EEEEG-GGGGTTHHHHHHHHH---------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred             eecce-eeeccccchhhcccc---------ccccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEecCCHHHHH
Confidence            98875 899999999999886         334444444 3454 56799998 45779999999999999999999999


Q ss_pred             HHHHHHHhC-CCCEEEEeccc
Q 017513          189 GLLKAAIRD-PDPVVFLENEL  208 (370)
Q Consensus       189 ~~l~~a~~~-~~Pv~i~~~~~  208 (370)
                      .++++++++ ++|+|||++|.
T Consensus       169 ~a~~~a~~~~~gP~ylRl~R~  189 (195)
T d2r8oa1         169 VAWKYGVERQDGPTALILSRQ  189 (195)
T ss_dssp             HHHHHHHHCSSSCEEEECCSS
T ss_pred             HHHHHHHHcCCCCEEEEecCC
Confidence            999999975 68999997653

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=217.50  Aligned_cols=135  Identities=35%  Similarity=0.532  Sum_probs=127.5

Q ss_pred             cccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       225 ~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      |.+++||++++++|.|+||||||.|++.|++|++.|+++ |++++|||++||+|||.+.|.++++++++++|+|||+..|
T Consensus         2 y~i~iGk~~v~~~G~DitIis~G~~~~~al~aa~~L~~~~gi~~~vid~~~l~PlD~~~i~~s~~kt~~livvee~~~~g   81 (138)
T d2bfdb2           2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG   81 (138)
T ss_dssp             CCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTT
T ss_pred             eeEeCCEEEEEEeCCeEEEEEChHHHHHHHHHHHHHHhcCCcceeeeeeccccccchHHHHHHhcccCeEEEecCccccc
Confidence            668999999999999999999999999999999999765 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      |+|++|++.+.++++..++.|+.++|.+|.|.|+  .|++.+++|+++|+++|+++++
T Consensus        82 G~gs~i~~~l~~~~~~~l~~~~~ri~~~d~p~p~--~le~~~~~~~~~I~~~i~~lln  137 (138)
T d2bfdb2          82 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPH--IFEPFYIPDKWKCYDALRKMIN  137 (138)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCS--TTHHHHSCCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhhHhhCCCCcEEECCCCCCCCh--hHHHHhCCCHHHHHHHHHHHhC
Confidence            9999999999999887788899999999998875  3788899999999999999885

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5e-30  Score=215.64  Aligned_cols=136  Identities=40%  Similarity=0.633  Sum_probs=127.6

Q ss_pred             CcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          224 SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       224 ~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      +|.+++||++++++|+|++|||+|.|+..|++|++.|+++|++++|||++|++|||.+.+.++++++++++|+|||+..|
T Consensus         1 dY~~~iGk~~v~r~G~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPlD~~~i~~sv~kt~~vv~veE~~~~g   80 (137)
T d1umdb2           1 DYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHA   80 (137)
T ss_dssp             CCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEEEEEESTT
T ss_pred             CceEeCCEEEEEEeCCCEEEEEcchhhhhhhhhhhcccccCcceEEEeecccCCcchhhhhHHHhccCcEEEEEcccccc
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      |+|+.|++.+.++++..+..|+.+++.+|.|.|+.  +++.++||+++|+++|+++|+
T Consensus        81 g~g~~v~~~l~e~~~~~~~~~i~~~~~~d~~~p~~--~~~~~~l~~~~I~~~i~~~l~  136 (137)
T d1umdb2          81 SFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKLYLPTVTRILNAAKRALD  136 (137)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--THHHHSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhcCCCeEEEccCCCCCCcc--hHHHhCcCHHHHHHHHHHHhC
Confidence            99999999999988777778899999999998864  356789999999999999985

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=211.71  Aligned_cols=135  Identities=59%  Similarity=0.943  Sum_probs=127.3

Q ss_pred             cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChH
Q 017513          227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG  306 (370)
Q Consensus       227 ~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg  306 (370)
                      .|+||++++++|.|++|||||+|++.|++|++.|+++|++++|||++|++|||.+.+.++++++++++|+|||+..||+|
T Consensus         2 ipiGK~~i~~~G~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPld~~~i~~~~~k~~~iivvee~~~~gG~g   81 (138)
T d2ozlb2           2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVG   81 (138)
T ss_dssp             CCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHH
T ss_pred             ccCCeeEEEEeCCCEEEEEccHHHHhHHHHhhhhcccCcceEEEEeccccCCcchhhhhhhccccceEEeecccccchHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-ccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          307 AEICASVIEE-SFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       307 ~~i~~~l~~~-~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      +++++.+.++ .+..++.|+.++|.+|.|.|++..|++.+++|+++|+++++++++
T Consensus        82 s~i~~~l~e~~~~~~l~~~v~ri~~~d~~ip~~~~le~~~~~~~~~I~~~i~~~ln  137 (138)
T d2ozlb2          82 AEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLN  137 (138)
T ss_dssp             HHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhccCccEEEccCCcCCCccHHHHHHhCcCHHHHHHHHHHHcC
Confidence            9999999886 445677899999999999998888999889999999999999874

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=2e-29  Score=210.62  Aligned_cols=131  Identities=46%  Similarity=0.669  Sum_probs=124.2

Q ss_pred             CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHH
Q 017513          230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI  309 (370)
Q Consensus       230 Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i  309 (370)
                      ||++++++|.|+||||+|.|+..|++|++.|+++|++++|||++|++|||.+.+.++++++++++|+|||+..||+|++|
T Consensus         1 Gk~~v~~~G~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~~lkPlD~~~i~~~~~kt~~vivveE~~~~gG~gs~i   80 (132)
T d1w85b2           1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV   80 (132)
T ss_dssp             TCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHH
T ss_pred             CceEEEEeCCCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeeeccCCcchhhhhHHHhccCCeeEEecccccccHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          310 CASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       310 ~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      ++.+.++++..++.++.++|++|.|.|++. +++.+++++++|+++++++++
T Consensus        81 ~~~l~~~~~~~l~~~v~~ig~~d~~~p~~~-~e~~~~~~~~~I~~~i~~ll~  131 (132)
T d1w85b2          81 VAEINERAILSLEAPVLRVAAPDTVYPFAQ-AESVWLPNFKDVIETAKKVMN  131 (132)
T ss_dssp             HHHHHHHHGGGCSSCCEEEEECSSSSCCGG-GHHHHSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHhchhccCCCeEEecCCCcCCCCcC-HHHHhCcCHHHHHHHHHHHhC
Confidence            999999887767889999999999998764 678899999999999999885

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.96  E-value=2.7e-29  Score=210.62  Aligned_cols=135  Identities=38%  Similarity=0.573  Sum_probs=116.3

Q ss_pred             CcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          224 SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       224 ~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      +|.+++||++++|+|+|++|||+|.|++.|++|++.|   +++++|||++|++|||.++|.++++++++++|+|||+..|
T Consensus         1 dY~~~~Gk~~ilr~G~dvtIi~~G~mv~~al~aa~~l---~~~~~vid~~~lkPlD~~~i~~~~~k~~~vvvvEe~~~~g   77 (135)
T d1ik6a2           1 DYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTG   77 (135)
T ss_dssp             SCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTS---SSCEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTT
T ss_pred             CceeeCCEEEEEEeCCcEEEEEeccchHHHHHHHHhh---ccchhhhccccccCCChHHHhHHHhccCCcEEEecCcccc
Confidence            4778999999999999999999999999999999988   4689999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR  362 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~  362 (370)
                      |+|++|++.+.++++..++.|+.++|.+|.|.++ ..+++.+++|+++|+++|+++|+.
T Consensus        78 G~gs~i~~~l~e~~~~~l~~~~~~ig~~d~~~~~-~~le~~~~l~~~~I~~~i~~~l~y  135 (135)
T d1ik6a2          78 GLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSP-IAADAAYAPTVERIIKAIEYVMRY  135 (135)
T ss_dssp             SHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------------CHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHhhhcccCCCeEEEcCCCcCCCc-HHHHHHhCcCHHHHHHHHHHHhcC
Confidence            9999999999999887788899999999987764 356778899999999999999863

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=3.1e-28  Score=203.44  Aligned_cols=132  Identities=41%  Similarity=0.596  Sum_probs=122.2

Q ss_pred             cccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCC
Q 017513          225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHG  304 (370)
Q Consensus       225 ~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG  304 (370)
                      |.+|+||++++++|+|+||||||.|++.|++|++   ++|++++|||++|++|||.+.+.++++++++++|+|||+..||
T Consensus         2 y~~piGk~~v~~~G~Ditiis~G~~v~~a~~a~~---~~gi~~~vidl~~l~PlD~~~i~~~~~kt~~vi~vEe~~~~gG   78 (134)
T d1qs0b2           2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCG   78 (134)
T ss_dssp             CCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH---HHCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTS
T ss_pred             eeecCCEEEEEEeCCCEEEEEeehHHHHHHHHHh---hcCcchhheeccccCCcchhhHHHHHhCCceEEEEecCccccc
Confidence            4578999999999999999999999999999986   4699999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513          305 VGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY  361 (370)
Q Consensus       305 lg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~  361 (370)
                      +|++|++.+.++++..++.|+.++|.+|.|.|+..  +..+.+++++|+++|+++++
T Consensus        79 ~gs~i~~~l~e~~~~~L~~~v~ri~~~d~p~p~~~--e~~~~~~~~~I~~~i~~ll~  133 (134)
T d1qs0b2          79 FGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQ--EWAYFPGPSRVGAALKKVME  133 (134)
T ss_dssp             THHHHHHHHHHHSSSSCCSCCEEEECCSSCCCSTT--HHHHSCCHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHHHhhhhccCCCeEEECCCCcCCCCCh--HHHhCcCHHHHHHHHHHHhC
Confidence            99999999999988888899999999999988753  45578999999999998874

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.2e-17  Score=140.21  Aligned_cols=119  Identities=18%  Similarity=0.102  Sum_probs=99.0

Q ss_pred             cCceEEeeeCC--cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC---CHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          229 IGKAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL---DRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       229 ~Gk~~vl~~g~--dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~---d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      .| +++++++.  |++||++|++++.|++|++.|+++||+++||+++|++||   |.+...+.+....+++++|.+... 
T Consensus        10 kG-aYiL~~~~~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v~iEa~~~~-   87 (146)
T d1gpua3          10 KG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATT-   87 (146)
T ss_dssp             TS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCST-
T ss_pred             cc-CEEEeeCCCCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhcccccceeeEEecccc-
Confidence            44 46788765  999999999999999999999999999999999999999   777777777777789999998764 


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVP  365 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~  365 (370)
                      ||..               .....+|+ |.|+.+  .++|.++||+|+++|++++++++++.|.
T Consensus        88 gw~~---------------~~~~~iGi-d~FG~Sg~~~~L~~~fGlt~~~I~~~v~~~L~~~k~  135 (146)
T d1gpua3          88 CWGK---------------YAHQSFGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAFYKG  135 (146)
T ss_dssp             TGGG---------------TCSEEECC-CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHHHHTT
T ss_pred             chhh---------------ccCceECc-ccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            4421               12256887 678764  5789999999999999999999987765

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.4e-17  Score=138.75  Aligned_cols=123  Identities=17%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             cccCceEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          227 LPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       227 ~~~Gk~~vl~~g~---dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      +..| +++++++.   |++||++|+++..|++|++.|+++||+++||+++|++|||.+..... .+....++.+++...+
T Consensus         9 i~kG-~Yvl~~~~~~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~~~k~l~~~~~~~~-~~~~~~~~~~~~~~~~   86 (136)
T d2r8oa3           9 IARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYR-ESVLPKAVTARVAVEA   86 (136)
T ss_dssp             GGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHH-HHHSCTTCCCEEEEEE
T ss_pred             hhcc-CEEEeecCCCCCEEEEeeccchHHHHHHHHHHHhcCCCceEeechhhhHHHHhHHHHH-HHhcccccccceeEEe
Confidence            3445 45777654   99999999999999999999999999999999999999988865432 2233334455666778


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRAC  360 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l  360 (370)
                      |++..+..++..++        ..+++ |.|+.+  .++|.++||+|+++|+++|+++|
T Consensus        87 g~~~~~~~~~~~~~--------~~~gi-d~Fg~Sg~~~~L~~~~Gl~~~~I~~~i~~~L  136 (136)
T d2r8oa3          87 GIADYWYKYVGLNG--------AIVGM-TTFGESAPAELLFEEFGFTVDNVVAKAKELL  136 (136)
T ss_dssp             EEGGGGHHHHTTSS--------EEEEE-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred             cCcchHHHhhcCCC--------ccccc-ccCCCCCCHHHHHHHcCCCHHHHHHHHHhhC
Confidence            88877777765422        34454 788764  58899999999999999999875

>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.48  E-value=2e-13  Score=113.60  Aligned_cols=118  Identities=18%  Similarity=0.121  Sum_probs=91.3

Q ss_pred             cCceEEeee--CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC---CHHHHHHHHhcCCeEEEEecCCCCC
Q 017513          229 IGKAKIERE--GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL---DRSTINASVRKTNRLVTVEEGFPQH  303 (370)
Q Consensus       229 ~Gk~~vl~~--g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~---d~~~i~~~~~~~~~vvvvEe~~~~G  303 (370)
                      .|. +++++  +.|++||++|+++..|++|++.|+++ |+++||+++|+++|   +.+.....+.+..+++++|.+...|
T Consensus         8 kGa-Yil~~~~~~dvtiiAtGseV~~AleAA~~L~~~-I~~~VVS~ps~~~~~~~~~~y~~~vl~~~~~~v~vEa~~~~g   85 (143)
T d1r9ja3           8 HGA-YSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFG   85 (143)
T ss_dssp             TSC-EEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTT
T ss_pred             ccC-EEEeeCCCCCEEEEEccHHHHHHHHHHHHHHhh-cceeEeeeeehhhhhhhhHHHHHHhCCCcccceeeEeecccc
Confidence            343 56665  46799999999999999999999865 99999999887655   4455666676767889999987644


Q ss_pred             ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513          304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVP  365 (370)
Q Consensus       304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~  365 (370)
                       |..          +     .-..+|+ |.|+.+  +++|.++||+|+++|++++++++++.+.
T Consensus        86 -w~~----------~-----~~~~iGi-d~FG~Sg~~~~L~~~fGlt~e~Iv~~~~~ll~k~~~  132 (143)
T d1r9ja3          86 -WEK----------Y-----SHAHVGM-SGFGASAPAGVLYKKFGITVEEVVRTGRELAKRFPD  132 (143)
T ss_dssp             -GGG----------T-----CSEEESC-SSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHHHSCT
T ss_pred             -eee----------c-----CCcEEec-CCccccCCHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence             321          1     1145787 678764  5789999999999999999999976554

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

Probab=99.44  E-value=3.4e-13  Score=114.16  Aligned_cols=81  Identities=14%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCC----hHHHHHH
Q 017513          237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHG----VGAEICA  311 (370)
Q Consensus       237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GG----lg~~i~~  311 (370)
                      +++|++||++|+++..+++|++.|+++|++++||+++++||||.+.+.+.+.++ +.|+|+|++...|+    +..++.+
T Consensus         9 ~dAd~viV~~Gs~~~~a~~A~~~L~~~Gi~vgvi~~r~lrPf~~~~l~~~l~k~~k~V~Vle~~~~~G~~g~~L~~dv~s   88 (157)
T d2c42a3           9 PDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCS   88 (157)
T ss_dssp             TTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHH
T ss_pred             CCCCEEEEEeCHhHHHHHHHHHHHHhhcccccEEEeEEEEeCCHHHHHHHHhccCCEEEEEeCCcCCCCCchHHHHHHHH
Confidence            568999999999999999999999999999999999999999999998887655 55566666666554    5556777


Q ss_pred             HHHhhc
Q 017513          312 SVIEES  317 (370)
Q Consensus       312 ~l~~~~  317 (370)
                      .|.+.+
T Consensus        89 aL~~~~   94 (157)
T d2c42a3          89 AFVERG   94 (157)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            776543

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.35  E-value=2.1e-12  Score=106.80  Aligned_cols=113  Identities=22%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             eEEeeeC-----CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH---HHHHHHh-cCCeEEEEecCCCC
Q 017513          232 AKIEREG-----KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS---TINASVR-KTNRLVTVEEGFPQ  302 (370)
Q Consensus       232 ~~vl~~g-----~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~---~i~~~~~-~~~~vvvvEe~~~~  302 (370)
                      ++++++.     .|++|+++|+++.+|++|++.|+++||+++||+++|+++|+.+   .....+. ....++.+|.+.. 
T Consensus        12 ~Y~l~~~~~~~~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i~~~~~~~~~~ie~~~~-   90 (136)
T d1itza3          12 GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-   90 (136)
T ss_dssp             SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-
T ss_pred             CEEEeecCCCCCCCEEEEEecHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhhhhccccccccccchhhhhhh-
Confidence            3566653     3899999999999999999999999999999999998887443   2333333 2345678888764 


Q ss_pred             CChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHH
Q 017513          303 HGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKR  358 (370)
Q Consensus       303 GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~  358 (370)
                      .+|..    ++        +.+...+|. |.|+.+  .++|.++||+|+++|+++++.
T Consensus        91 ~~w~~----~~--------~~~~~~~g~-d~FG~Sg~~~~L~~~fglt~~~Iv~~~ks  135 (136)
T d1itza3          91 LGWQK----YV--------GAQGKAIGI-DKFGASAPAGTIYKEYGITVESIIAAAKS  135 (136)
T ss_dssp             TTTHH----HH--------CSSCEEECC-CSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred             hhHHH----hc--------CCcCccccc-cCccCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence            45533    22        123355665 678764  588999999999999999874

>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Pyruvate dehydrogenase E1 component, C-domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=4.6e-08  Score=84.23  Aligned_cols=117  Identities=18%  Similarity=0.124  Sum_probs=81.7

Q ss_pred             CcEEEEEechhHHHHHHHHH-HHHhcCCceeEEEeccccCCCHHHHH------------------HHHhcCCeEEEEecC
Q 017513          239 KDVTITAFSKIVGLSLKAAE-ILAKEGISAEVINLRSIRPLDRSTIN------------------ASVRKTNRLVTVEEG  299 (370)
Q Consensus       239 ~dv~Iia~G~~~~~al~Aa~-~L~~~Gi~v~Vi~~~~l~P~d~~~i~------------------~~~~~~~~vvvvEe~  299 (370)
                      .+++|+++|+.+.+|++|++ .|+++|++++|++++|..-|+.+...                  +.......++.+.+.
T Consensus        24 p~v~LlaSGsev~~aleAa~~ll~~~gi~~~VvS~pS~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~~~~  103 (186)
T d2ieaa3          24 GKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDY  103 (186)
T ss_dssp             EEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCSSCEEEECSS
T ss_pred             ceEEEEEehHHHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHhhHHHHhhccccccccccchhhhcccCCCCeEEEEEe
Confidence            58999999999999999998 56777999999999998777665332                  111122356666654


Q ss_pred             CCCCChHHHHHHHHHhhccCCC-CCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhccccc
Q 017513          300 FPQHGVGAEICASVIEESFGYL-DAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVPM  366 (370)
Q Consensus       300 ~~~GGlg~~i~~~l~~~~~~~l-~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~~  366 (370)
                      ... . .    ..+..    ++ +.+...+|. |.|+.+  .+.|.++|++|+++|++++++.|.++.++
T Consensus       104 ~~~-~-~----~~~~~----~~~g~~~~~LG~-d~FG~S~~~~~L~~~Fgi~~~~Iv~aAl~~L~~~g~i  162 (186)
T d2ieaa3         104 MKL-F-A----EQVRT----YVPADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEI  162 (186)
T ss_dssp             CTH-H-H----HTTGG----GCCSSCEEEECC-CSCBCCSCHHHHHHHTTCSHHHHHHHHHHHHHHTTSS
T ss_pred             eec-c-c----hhhcc----cccCCCcEEEEe-CCcCCCCChHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            321 0 1    11111    11 235677876 577754  58899999999999999999999665443

>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Pyruvate dehydrogenase E1 component, Pyr module
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.2e-06  Score=74.13  Aligned_cols=163  Identities=15%  Similarity=0.209  Sum_probs=109.8

Q ss_pred             cccccccHHHHHHHHHHHHHhcC---CCeEEecCCCCCCCCccccchhHHHHhC------------------------CC
Q 017513           32 SAVKQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGAYKISKGLLEKYG------------------------PE   84 (370)
Q Consensus        32 ~~~~~~~~r~a~~~~L~~l~~~~---~~ivvi~~Dl~~~~g~~~~~~~~~~~~~------------------------p~   84 (370)
                      +.++.+|+..||++.|.++++..   ++||-+.+|.+.+   +++ .++.++.+                        ..
T Consensus        17 ~~~r~iSTt~Af~riL~~L~rd~~lg~RiVpivPDearT---fgm-~~~f~q~GIys~~gq~y~p~D~~~~~~y~e~~~G   92 (230)
T d2ieaa1          17 EQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEART---FGM-EGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKG   92 (230)
T ss_dssp             CCSSCBCHHHHHHHHHHHHTTCTTTGGGEEEEESSCSGG---GTC-HHHHHHHCBBCC-----------------CBTTC
T ss_pred             CCCccccHHHHHHHHHHHHhcCcccccceeeecCcccee---cch-hhhhhhcceeeeccccccccccccceEccccCCC
Confidence            44778999999999999998843   4699999998843   332 33333211                        37


Q ss_pred             cEeechhhHHHHHHH--HHHHhcc--C--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-C
Q 017513           85 RVLDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-A  156 (370)
Q Consensus        85 r~~~~GIaE~~~v~~--A~GlA~~--G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~  156 (370)
                      |.++.||+|.++++.  |+|.|.+  |  +.||.-.|++|..+|.-|.+ ..++.       ++.-..++.+. ++.+ .
T Consensus        93 Q~le~GI~E~g~~~~~~Aagtsy~~~g~~miP~y~~YsmFg~qr~~dl~-waa~d-------~~argFl~g~T~grtTL~  164 (230)
T d2ieaa1          93 QILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLC-WAAGD-------QQARGFLIGGTSGRTTLN  164 (230)
T ss_dssp             CBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHH-HHHHH-------TTCCSEEEEESCSTTTST
T ss_pred             cEeeccchhhhHHHHHHHhhhhHhhcCCccceeeeehhHHHhhhHhHHH-HHHHh-------hccCceEEEecCCCCeec
Confidence            899999999999876  4444443  5  68998777766566665543 23322       12334555554 3433 2


Q ss_pred             CCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEec
Q 017513          157 GVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLEN  206 (370)
Q Consensus       157 ~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~  206 (370)
                      +-|-.| +..-.-+...+||+.-+.|+-+.|+..++++.+++     +.-+|.+++
T Consensus       165 gEGlqHqdg~s~l~~~~~P~~~sydPafa~Ela~i~~~Gl~rM~~~~~~~v~yylt  220 (230)
T d2ieaa1         165 GEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYIT  220 (230)
T ss_dssp             TTCBTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred             CCcccccccccceecccCCCceEEcchHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            345555 22223466789999999999999999999998862     346777654

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.57  E-value=2.4e-07  Score=83.66  Aligned_cols=110  Identities=19%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             EeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcch
Q 017513           86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHS  163 (370)
Q Consensus        86 ~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs  163 (370)
                      .+...-+|+++++++.|++.+|.|.++.|.++ .+.++.|.+....         ..++|+|+..  +++..++...+..
T Consensus        56 ~~~~~e~E~~A~~~~~Ga~~aG~r~~t~ts~~-Gl~~m~e~l~~a~---------~~~~P~V~~v~~r~~~~~~~~~~~~  125 (257)
T d2c42a1          56 TIREMQSEAGAAGAVHGALAAGALTTTFTASQ-GLLLMIPNMYKIS---------GELLPGVFHVTARAIAAHALSIFGD  125 (257)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCCEEEEECHH-HHHHHHHHHHHHH---------HTTCCCEEEEEECCCCSSSBCCSCC
T ss_pred             EEEEecccchhHHHHHHHHhcCCCeEEEecch-HHHHHHHHHHHHH---------hcCCceEEEEEecCCCCCCCccccc
Confidence            56677899999999999999999999999764 4567888875432         2578877765  4554444333334


Q ss_pred             HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEec
Q 017513          164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN  206 (370)
Q Consensus       164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~  206 (370)
                      |.|. ++...-|+.++.|+|+||++++...|++    ...||+++.+
T Consensus       126 q~d~-~~~~~~g~~~l~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~D  171 (257)
T d2c42a1         126 HQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFD  171 (257)
T ss_dssp             SHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             hHHH-HHHHhcceEEEecCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence            5553 4555678999999999999999998886    4689998754

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=96.64  E-value=0.0065  Score=50.90  Aligned_cols=157  Identities=12%  Similarity=-0.016  Sum_probs=91.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCe-eEEE
Q 017513           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLK-PVVE  113 (370)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~r-p~~~  113 (370)
                      ++++..+++.+.|.+..-   +-++.-+.-    ....+.+.+.++...=||+.+ -.|++++.+|.|.++...+ .++.
T Consensus         2 ~~i~~~~~i~~~L~~~GV---~~vFgipG~----~~~~l~dal~~~~~~i~~i~~-r~E~~A~~~A~gyar~tg~~gv~~   73 (184)
T d2djia2           2 NKINIGLAVMKILESWGA---DTIYGIPSG----TLSSLMDAMGEEENNVKFLQV-KHEEVGAMAAVMQSKFGGNLGVTV   73 (184)
T ss_dssp             CEEEHHHHHHHHHHHTTC---CEEEECCCT----TTHHHHTTSSSTTCCCEEEEC-SSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CceeHHHHHHHHHHHCCC---CEEEEECCh----hHHHHHHHHHhccCCcEEEEe-cCCcchHHHHHhhhhcccCcceee
Confidence            466777777777765432   223322211    112222333222212377877 4899999999999988444 4433


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (370)
                      +.+...+..++.-+.+..         ..++||+++... .. ..+.+..|..+...+++.+-.+ .....+++++..++
T Consensus        74 ~t~GpG~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~-~~~v~~~~~~~~~~  143 (184)
T d2djia2          74 GSGGPGASHLINGLYDAA---------MDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY-NRRVAYAEQLPKLV  143 (184)
T ss_dssp             ECTTHHHHTTHHHHHHHH---------HHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCSE-EEECCSGGGHHHHH
T ss_pred             ccccccccchhHhHHHHH---------HhCccceeecccchhhHhhcCcccccccccchhhhcce-eeccccchhhHHHH
Confidence            333334456666665432         268999988621 11 1122333322225788887654 56777788888888


Q ss_pred             HHHHh----CCCCEEEEecccc
Q 017513          192 KAAIR----DPDPVVFLENELL  209 (370)
Q Consensus       192 ~~a~~----~~~Pv~i~~~~~l  209 (370)
                      +.|++    .++||+|-.|..+
T Consensus       144 ~~A~~~a~~~rGPv~i~iP~Dv  165 (184)
T d2djia2         144 DEAARMAIAKRGVAVLEVPGDF  165 (184)
T ss_dssp             HHHHHHHHHTTSEEEEEEETTG
T ss_pred             HHHHHHHhCCCCCEEEEeCchh
Confidence            77775    4699999877543

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.54  E-value=0.016  Score=47.92  Aligned_cols=125  Identities=11%  Similarity=-0.015  Sum_probs=74.6

Q ss_pred             chhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC
Q 017513           74 SKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN  152 (370)
Q Consensus        74 ~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~  152 (370)
                      .+.|.++...=|++.+ ..|++++-+|.|.++. |...++.+.+...+..++.-+.+..         ..+.||+++...
T Consensus        33 ~dal~~~~~~i~~i~~-r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N~~~gl~~A~---------~~~~P~l~i~g~  102 (174)
T d2ez9a2          33 MDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAR---------EDHVPVLALIGQ  102 (174)
T ss_dssp             HHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHH---------HTTCCEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEe-cccchhHHHHHHHHhhcCceeEEeecccccccchhhhHHHHH---------hcCccceeeecc
Confidence            3444433212355655 4999999999999987 6666665555455566666665433         268999988621


Q ss_pred             CCC--CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccc
Q 017513          153 GAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL  209 (370)
Q Consensus       153 G~~--~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l  209 (370)
                      -..  -+.+..|..+...+++.+-.+ .....+++++...++.|+    ..++||+|-.|..+
T Consensus       103 ~~~~~~~~~~~Q~~d~~~~~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~pGPv~l~iP~Dv  164 (174)
T d2ez9a2         103 FGTTGMNMDTFQEMNENPIYADVADY-NVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL  164 (174)
T ss_dssp             CCTTTTTSCCTTCCCCHHHHTTTCSE-EEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred             ccccccCccccccchhhhhhcccccc-ccccccHHHHHHHHHHHHHHHhCCCCCEEEEeCccc
Confidence            111  123333422225788887654 344455555555555444    45899999776543

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=96.37  E-value=0.014  Score=49.23  Aligned_cols=157  Identities=17%  Similarity=0.072  Sum_probs=91.0

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV  112 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~  112 (370)
                      +..++-.+++.++|.+..-  +.++.+-.+     ....+.+.|.+.  ++--+-....|++++.+|-|.|+. |...++
T Consensus         9 ~~~~~Gad~i~~~L~~~Gv--~~vFgipG~-----~~~~l~~al~~~--~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~   79 (195)
T d1ybha2           9 DQPRKGADILVEALERQGV--ETVFAYPGG-----ASMEIHQALTRS--SSIRNVLPRHEQGGVFAAEGYARSSGKPGIC   79 (195)
T ss_dssp             TCCEEHHHHHHHHHHTTTC--CEEEECCCG-----GGHHHHHHHHHC--SSCEECCCSSHHHHHHHHHHHHHHHSSCEEE
T ss_pred             CCCccHHHHHHHHHHHCCC--CEEEEcCCc-----cHHHHHHHHhhh--cceeecccccHHHHHHHHHHHHHHHCCCeEE
Confidence            4456677777777765432  223332211     122333444332  333444557999999999999988 544444


Q ss_pred             EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHH
Q 017513          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (370)
Q Consensus       113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (370)
                      .+.+......++.-+.+..         ..+.||+++...-.  ..+.+..+..+...+++.+-.+ .....+++++...
T Consensus        80 ~~t~GpG~~N~~~gl~~A~---------~~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~  149 (195)
T d1ybha2          80 IATSGPGATNLVSGLADAL---------LDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRI  149 (195)
T ss_dssp             EECTTHHHHTTHHHHHHHH---------HHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHH
T ss_pred             EEecChHHHHHHHHHHHHH---------HcCCCEEEEecCCcHHHhccCcccccchhhhhcccccc-hhhcchHhhcchH
Confidence            3333345556666665432         26899998852111  1122333323335788876544 5677777777777


Q ss_pred             HHHHHh-----CCCCEEEEecccc
Q 017513          191 LKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       191 l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      ++.|++     .++||+|-.|..+
T Consensus       150 ~~~A~~~a~~~r~GPV~l~iP~Dv  173 (195)
T d1ybha2         150 IEEAFFLATSGRPGPVLVDVPKDI  173 (195)
T ss_dssp             HHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred             HHHHHHHHhcCCCCcEEEECChHH
Confidence            777775     2589999776543

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.016  Score=47.99  Aligned_cols=153  Identities=14%  Similarity=0.079  Sum_probs=87.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~  115 (370)
                      ++..+++.+.|.+..-  +.++.+-.+     +...+.+.+.+.- .-|++. ...|++++.+|-|.|+. |...++.+.
T Consensus         4 mtg~~~l~~~L~~~Gi--~~vFgipG~-----~~~~l~~al~~~~-~~~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t   74 (175)
T d1t9ba2           4 LTGGQIFNEMMSRQNV--DTVFGYPGG-----AILPVYDAIHNSD-KFNFVL-PKHEQGAGHMAEGYARASGKPGVVLVT   74 (175)
T ss_dssp             CBHHHHHHHHHHHTTC--CEEEECCCG-----GGHHHHHHTTTCS-SSEEEC-CSSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             EEHHHHHHHHHHHCCC--CEEEEcCCh-----hHHHHHHHHhhcc-cceEEE-ecCchhHHHHHHHHHHHhCCceEEEEe
Confidence            5566777777765432  223322211     1222223332221 234555 56999999999999998 655555444


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (370)
                      +...+..++.-+.+..         ..++||+++...-...  +.+..|..+...+++.+-.+ .....+++++...++.
T Consensus        75 ~GpG~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~  144 (175)
T d1t9ba2          75 SGPGATNVVTPMADAF---------ADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKW-NVMVKSVEELPLRINE  144 (175)
T ss_dssp             STHHHHTTHHHHHHHH---------HHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSE-EEECCSGGGHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHH---------HcCCCEEEEecCCChhhcCCCccccccHhHhcccceee-eEecCCHHHHHHHHHH
Confidence            4345556666665432         2689999986322211  22233322335788887655 5567777777777777


Q ss_pred             HHh-----CCCCEEEEeccc
Q 017513          194 AIR-----DPDPVVFLENEL  208 (370)
Q Consensus       194 a~~-----~~~Pv~i~~~~~  208 (370)
                      |++     ..+||+|-.|..
T Consensus       145 A~~~a~~~~~GPv~l~iP~D  164 (175)
T d1t9ba2         145 AFEIATSGRPGPVLVDLPKD  164 (175)
T ss_dssp             HHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHhcCCCccEEEEcChh
Confidence            665     257999987654

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=96.20  E-value=0.016  Score=48.21  Aligned_cols=116  Identities=18%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CC-CCCCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAAGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G-~~~~~G~t  161 (370)
                      +++.+ -.|++++.||.|.|+. |...++.+.....+..++.-|.+..         ..+.||+++.. .. ...+.+..
T Consensus        39 ~~i~~-rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~gl~~A~---------~~~~Pvlvi~g~~~~~~~g~~~~  108 (180)
T d1q6za2          39 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAW---------NSHSPLIVTAGQQTRAMIGVEAL  108 (180)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHHH---------HTTCCEEEEEEECCHHHHTTTCT
T ss_pred             eEEEE-ccchhHHHHHHHHhhhccCcceEEeccccccccccceeHhhh---------hcccceeeecccccccccccccc
Confidence            45554 5899999999999998 5444444433344455556554432         26899988852 11 11122333


Q ss_pred             chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccccC
Q 017513          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLYG  211 (370)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~~  211 (370)
                      |+..| ..+++.+-.+ ...+.+++++...++.|++     .++||+|-.|.....
T Consensus       109 ~q~~D~~~~~~~~tK~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D~~~  163 (180)
T d1q6za2         109 LTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWD  163 (180)
T ss_dssp             TCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGTT
T ss_pred             chhhheeecccccccc-cccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhHhc
Confidence            32333 4677877665 5677888888888888876     258999988866544

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.93  E-value=0.028  Score=46.85  Aligned_cols=114  Identities=12%  Similarity=-0.060  Sum_probs=75.2

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC--CCCCCCCCCc
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGAQ  161 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~G~~~~~G~t  161 (370)
                      +|+.+ ..|++++.+|-|.|+. |...++.+.+...+..++.-+.+..         ..+.||+++..  ....-.....
T Consensus        39 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~  108 (186)
T d2ihta2          39 DFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSV---------LDRSPVIALAAQSESHDIFPNDT  108 (186)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHHH---------HHTCCEEEEEEESCGGGCCTTTS
T ss_pred             EEEEE-ccchhhHHHHHHHhhccCCcceeeccccccccchhhhhhHHH---------HhhccceeeeccCcchhcccccc
Confidence            56666 5899999999999987 7666665544455666677665432         26899998852  1111112223


Q ss_pred             chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (370)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l  209 (370)
                      |+..| ..+++.+-.+ .....+++++...++.|++     ..+||+|-.|..+
T Consensus       109 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~Di  161 (186)
T d2ihta2         109 HQCLDSVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL  161 (186)
T ss_dssp             TTCCCHHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred             ccccccccccCCceee-ccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHhH
Confidence            43333 5788887654 4567788888887777775     2579999877554

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.79  E-value=0.061  Score=44.49  Aligned_cols=155  Identities=15%  Similarity=0.098  Sum_probs=89.6

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEc
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEF  114 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t  114 (370)
                      .++-.+++.+.|.+..-  +.++.+-.+     ....+.+.|.+ . .=|++.+- .|++++.+|-|.|+. |...++.+
T Consensus         4 ~~~G~d~l~~~L~~~Gv--~~vFg~pG~-----~~~~l~~al~~-~-~i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~~   73 (181)
T d1ozha2           4 WAHGADLVVSQLEAQGV--RQVFGIPGA-----KIDKVFDSLLD-S-SIRIIPVR-HEANAAFMAAAVGRITGKAGVALV   73 (181)
T ss_dssp             ESCHHHHHHHHHHHHTC--CEEEEECCT-----TTHHHHHHGGG-S-SSEEEECS-SHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cccHHHHHHHHHHHCCC--CEEEEeCcH-----hHHHHHHHHHh-h-hccccccc-ccHHHHHHHHHHHHhcCCccceee
Confidence            45567778887765432  234433321     12222333432 2 23555543 899999999999998 65444444


Q ss_pred             ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017513          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (370)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (370)
                      .....+..++.-|.+..         ..+.||+++...-....  .+..+..+...+++.+-.+ .....+++++..+++
T Consensus        74 t~GpG~~n~~~gi~~A~---------~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~  143 (181)
T d1ozha2          74 TSGPGCSNLITGMATAN---------SEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVS  143 (181)
T ss_dssp             CSTHHHHTTHHHHHHHH---------HHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHH
T ss_pred             ccchhhhhhhhhHHHHh---------hcCCceeeeecccchhhccccccccccccccccccchh-eeccCchhHHHHHHH
Confidence            33345555666665432         26899998862112222  2222222335889988765 456677777777777


Q ss_pred             HHHh-----CCCCEEEEeccccc
Q 017513          193 AAIR-----DPDPVVFLENELLY  210 (370)
Q Consensus       193 ~a~~-----~~~Pv~i~~~~~l~  210 (370)
                      .|++     .++||+|-.|..+.
T Consensus       144 ~A~~~A~~~~~GPV~l~iP~Dv~  166 (181)
T d1ozha2         144 NAFRAAEQGRPGSAFVSLPQDVV  166 (181)
T ss_dssp             HHHHHHHSSSCCEEEEEEEHHHH
T ss_pred             HHHHHHhhCCCccEEEEcChHHh
Confidence            7765     35899998776543

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=95.73  E-value=0.01  Score=49.49  Aligned_cols=154  Identities=17%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhH--HHHHHHHHHHhccCCeeEEE
Q 017513           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE--AGFTGIGVGAAYYGLKPVVE  113 (370)
Q Consensus        36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE--~~~v~~A~GlA~~G~rp~~~  113 (370)
                      .++...+ -++|.+++.++|+.++++ |.+   .+......+.....|.+|++.|.--  -..++.|.|.+.+--||++.
T Consensus         5 ~~~~~~~-~~~l~~~~~~~~D~iiv~-dgg---~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~~~~~vv~   79 (183)
T d2ji7a3           5 MMNYSNS-LGVVRDFMLANPDISLVN-EGA---NALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIA   79 (183)
T ss_dssp             CBCHHHH-HHHHHHHHHHCCSSEEEE-ESS---HHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHHHCSCEEE
T ss_pred             cCCHHHH-HHHHHHHHhcCCCEEEEE-Cch---hHHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcCCcceEEE
Confidence            3445444 567777888888877654 322   1211122233333488999865311  11244455554443466666


Q ss_pred             cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCC------CCCC----c-chHHHHHHHccCCCcEEEe
Q 017513          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA------GVGA----Q-HSHCYAAWYASVPGLKVLS  180 (370)
Q Consensus       114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~------~~G~----t-Hs~~~~a~~~~iP~~~V~~  180 (370)
                      +.. +.....--|-...++        ..++|++++.  .+|...      ..|.    . +..++..+-++. |+.-+.
T Consensus        80 i~G-DGsf~~~~~el~ta~--------~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~  149 (183)
T d2ji7a3          80 VEG-DSAFGFSGMELETIC--------RYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAF-GGKGYV  149 (183)
T ss_dssp             EEE-HHHHHTTGGGHHHHH--------HTTCCEEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHT-TCEEEE
T ss_pred             EEc-Ccchhhchhhhhhhh--------hccccchhhhhhhhhhhhhhhccccccccccccccccchhhhhhhc-CCcEEE
Confidence            644 443211112122333        3678877765  233211      0111    1 112333444444 778888


Q ss_pred             eCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          181 PYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       181 P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ..++.|+...++.+++.++|++|-
T Consensus       150 v~~~~el~~al~~a~~~~~p~lIe  173 (183)
T d2ji7a3         150 ANTPAELKAALEEAVASGKPCLIN  173 (183)
T ss_dssp             ECSHHHHHHHHHHHHHHTSCEEEE
T ss_pred             eCCHHHHHHHHHHHHhCCCcEEEE
Confidence            999999999999999999999984

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.092  Score=43.17  Aligned_cols=113  Identities=13%  Similarity=0.032  Sum_probs=65.3

Q ss_pred             cEeechhhHHHHHHHHHHHhccCCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC---CCCCCCCCC
Q 017513           85 RVLDTPITEAGFTGIGVGAAYYGLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP---NGAAAGVGA  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~---~G~~~~~G~  160 (370)
                      ||+.+- .|++++.+|.|.++...+|.+ .+..|. ...++.-+.+.  +       ..++||+++..   .+..+....
T Consensus        43 ~~i~~~-~E~~A~~~A~gyar~t~~~~v~~t~GpG-~~N~~~gl~~A--~-------~~~~P~l~i~g~~~~~~~~~~~~  111 (180)
T d1pvda2          43 RWAGNA-NELNAAYAADGYARIKGMSCIITTFGVG-ELSALNGIAGS--Y-------AEHVGVLHVVGVPSISSQAKQLL  111 (180)
T ss_dssp             EECCCS-CHHHHHHHHHHHHHHHSCEEEEEETTHH-HHHHHHHHHHH--H-------HHTCCEEEEEEECCCC-------
T ss_pred             EEeeec-ccchhhHHHHHHhhccCCceeeeccccc-cchhhHHHHHH--H-------hhcccEEEEeccCCcccccccce
Confidence            566654 999999999999998555655 444544 44666766542  2       26899998852   111111111


Q ss_pred             -cchH------HHHHHHccCCCcEEEeeCCHHHH----HHHHHHHHhCCCCEEEEecccc
Q 017513          161 -QHSH------CYAAWYASVPGLKVLSPYSSEDA----RGLLKAAIRDPDPVVFLENELL  209 (370)
Q Consensus       161 -tHs~------~~~a~~~~iP~~~V~~P~d~~e~----~~~l~~a~~~~~Pv~i~~~~~l  209 (370)
                       +|.+      ....+++.+-.+. ....+++++    ..+++.|...++||+|-.|+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~gPv~i~iP~dv  170 (180)
T d1pvda2         112 LHHTLGNGDFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL  170 (180)
T ss_dssp             -CCSCSSSCSSHHHHHHGGGCSEE-EECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTT
T ss_pred             eeecccccchhHHHHHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhCCCCCEEEECCccc
Confidence             1211      1236777766553 333444444    4455555556899999877543

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=94.88  E-value=0.24  Score=40.30  Aligned_cols=153  Identities=12%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEE-Ecc
Q 017513           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV-EFM  115 (370)
Q Consensus        37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~-~t~  115 (370)
                      .+..+++.+.|.+..-   +-++.-+  |  +....+.+.+.++- -=+++.+ -.|++++.+|.|.|+...+|.+ .+.
T Consensus         3 ~tvad~iv~~L~~~GV---~~vFg~p--G--~~~~~l~~al~~~~-~i~~i~~-rhE~~A~~~A~gyar~t~~~~v~~t~   73 (178)
T d1ovma2           3 YCVADYLLDRLTDCGA---DHLFGVP--G--DYNLQFLDHVIDSP-DICWVGC-ANELNASYAADGYARCKGFAALLTTF   73 (178)
T ss_dssp             CBHHHHHHHHHHHTTC---CEEEECC--C--GGGHHHHHHHHHCS-SCEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred             ccHHHHHHHHHHHCCC---CEEEEeC--C--hhHHHHHHHHHhCC-CeEEEEe-ccchhhHHHHHHHHhcCCCceEEeec
Confidence            4566666666654322   2333322  1  11223344454432 2355554 4999999999999998555644 444


Q ss_pred             cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC---CCCCCCcc------hHHHHHHHccCCCcEEEeeCCHH
Q 017513          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA---AAGVGAQH------SHCYAAWYASVPGLKVLSPYSSE  185 (370)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~---~~~~G~tH------s~~~~a~~~~iP~~~V~~P~d~~  185 (370)
                      .| .+..++.-|.+..         ..++||+++.. ...   ..+...+|      .++...+++.+..+.-.. .+++
T Consensus        74 Gp-G~~n~~~gl~~A~---------~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v-~~~~  142 (178)
T d1ovma2          74 GV-GELSAMNGIAGSY---------AEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVL-TEQN  142 (178)
T ss_dssp             TH-HHHHTHHHHHHHH---------HTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEEC-CTTT
T ss_pred             cc-cccccchhhhHHH---------hcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEe-CcHH
Confidence            44 4456666665432         26899998852 110   00111111      122346778776654332 3344


Q ss_pred             HHHH---HHHHHHhCCCCEEEEecccc
Q 017513          186 DARG---LLKAAIRDPDPVVFLENELL  209 (370)
Q Consensus       186 e~~~---~l~~a~~~~~Pv~i~~~~~l  209 (370)
                      +...   .+..+....+|++|-.|..+
T Consensus       143 ~~~~~~~~~~~a~~~~~Pv~i~iP~Dv  169 (178)
T d1ovma2         143 ACYEIDRVLTTMLRERRPGYLMLPADV  169 (178)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEChHH
Confidence            4444   44444445789999776544

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=94.42  E-value=0.25  Score=40.69  Aligned_cols=117  Identities=13%  Similarity=0.030  Sum_probs=73.0

Q ss_pred             CCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC---C-C
Q 017513           83 PERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---A-G  157 (370)
Q Consensus        83 p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~---~-~  157 (370)
                      .-+|+.+- .|++++.+|.|.++. |...++.+.+......++.-|.+.  +       ..+.||+++......   + .
T Consensus        41 ~i~~i~~~-hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gl~~A--~-------~~~~Pvl~i~g~~~~~~~~~~  110 (188)
T d2ji7a2          41 GQRFYSFR-HEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHA--T-------TNCFPMILLSGSSEREIVDLQ  110 (188)
T ss_dssp             TCEEEECS-SHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTT
T ss_pred             CCEEEEec-ccchhhhHHHHHHhhhcccceeeccccccccccchhHHHH--H-------HhcccceEEeccCchhhhccc
Confidence            45777766 999999999999998 554444333334455566666543  2       268999988621111   1 1


Q ss_pred             CCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccccc
Q 017513          158 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY  210 (370)
Q Consensus       158 ~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~  210 (370)
                      .+..|..+...+++.+-.+ .+...+++++...++.|++    . ++||+|-.|....
T Consensus       111 ~~~~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~dv~  167 (188)
T d2ji7a2         111 QGDYEEMDQMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLF  167 (188)
T ss_dssp             CCCTTCCCHHHHTGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHHH
T ss_pred             ccccceeeeecccCCcchh-hhccccccccHHHHHHHHHHHhCCCCceEEEEcChhHh
Confidence            2333322335788887665 4555677776666666664    2 5799998775443

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.25  E-value=0.6  Score=38.21  Aligned_cols=114  Identities=16%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC--CCCCCCCC-C
Q 017513           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVG-A  160 (370)
Q Consensus        85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~G~~~~~G-~  160 (370)
                      ||+.+ ..|++++.||-|.|+. |.-.++.+..|. ...++.-+.+.  +       ..++||+++..  .....+.| .
T Consensus        42 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~t~GpG-~~N~~~gl~~A--~-------~~~~Pvl~isg~~~~~~~~~~~~  110 (186)
T d1zpda2          42 EQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSVG-ALSAFDAIGGA--Y-------AENLPVILISGAPNNNDHAAGHV  110 (186)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTTT-HHHHHHHHHHH--H-------HTTCCEEEEEEECCGGGTTTTCB
T ss_pred             eEeee-ccccceehhhhhhhhccccceeEeecccc-chhhhhhhhhh--h-------hcccceEEEecccCcccccCCCc
Confidence            55555 5999999999999998 655566666654 44667776543  2       26899998852  11111212 1


Q ss_pred             -cch-----H-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH----HhCCCCEEEEeccccc
Q 017513          161 -QHS-----H-CYAAWYASVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFLENELLY  210 (370)
Q Consensus       161 -tHs-----~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a----~~~~~Pv~i~~~~~l~  210 (370)
                       +|.     . ...++++.+-.+ .....+++++...++.|    ...++||+|-.|..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~PV~l~iP~Dv~  170 (186)
T d1zpda2         111 LHHALGKTDYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA  170 (186)
T ss_dssp             CTTSCSSSCCCHHHHHHGGGCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEETTST
T ss_pred             ceeecCCcchhhhhhccCCceee-eeEcCCHHHHHHHHHHHHHHHhhCCCCEEEECCcchh
Confidence             121     1 124788876554 34445555555555554    4456899998776543

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=93.08  E-value=0.051  Score=45.65  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             CCcEeechhh--HHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC--
Q 017513           83 PERVLDTPIT--EAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA--  156 (370)
Q Consensus        83 p~r~~~~GIa--E~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~--  156 (370)
                      |.+|+..+--  =-..+..|.|++++ .-++++++.. +......-|-...++        ..++|++++. ..+..+  
T Consensus        52 p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv~i~G-DGsf~~~~~el~t~~--------~~~lpi~ivV~NN~~~g~i  122 (198)
T d2ihta3          52 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAG-DGGFHSNSSDLETIA--------RLNLPIVTVVVNNDTNGLI  122 (198)
T ss_dssp             TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEE-HHHHHHTGGGHHHHH--------HHTCCCEEEEEECSBCHHH
T ss_pred             CCeEEecCCcccchhHHHHHHHHhhhhcccceEeecc-cccccccchhhhhhh--------hhhhhhhHHHhhccccceE
Confidence            7889874421  12346677787666 4566666644 443211112123344        3567776665 232211  


Q ss_pred             -------CCCC----c-chH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          157 -------GVGA----Q-HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       157 -------~~G~----t-Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                             ..+.    + ... ++..+-.+ -|+.-+...+++|+...+++|++.++|++|-.
T Consensus       123 ~~~q~~~~~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  183 (198)
T d2ihta3         123 ELYQNIGHHRSHDPAVKFGGVDFVALAEA-NGVDATRATNREELLAALRKGAELGRPFLIEV  183 (198)
T ss_dssp             HHHHHHHHSSCCGGGTBCCCCCHHHHHHH-TTCEEEECCSHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             eeeeccccccccccccccCCcchhhhccc-cCceEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence                   0000    1 111 12223333 25677778999999999999999999999853

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=92.83  E-value=0.17  Score=41.54  Aligned_cols=153  Identities=18%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhH-HHHHHHHHHHhcc-CCeeE
Q 017513           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE-AGFTGIGVGAAYY-GLKPV  111 (370)
Q Consensus        34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE-~~~v~~A~GlA~~-G~rp~  111 (370)
                      ...++. ..+.++|.+++.+| .+++.  |.+..  .... ..+.+-..|.+|+..+-.= -..+..|.|++++ .-+++
T Consensus         9 ~~~i~p-~~~~~~l~~~l~~d-~ivv~--d~G~~--~~~~-~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~p~~~v   81 (183)
T d1q6za3           9 AGRLHP-ETVFDTLNDMAPEN-AIYLN--ESTST--TAQM-WQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQV   81 (183)
T ss_dssp             SSSBCH-HHHHHHHHHHSCTT-CEEEE--ECTTS--HHHH-HHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCE
T ss_pred             CCCCCH-HHHHHHHHHhCCCC-cEEEE--cCCch--HHHH-HHHHhhccccccccccCCCcccchhHHHhhhhhccccce
Confidence            334444 34566677776554 44444  43321  1111 1222222267777654210 1345677777776 35777


Q ss_pred             EEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC----------CC---CC-cchHHHHHHHccCCC
Q 017513          112 VEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA----------GV---GA-QHSHCYAAWYASVPG  175 (370)
Q Consensus       112 ~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~----------~~---G~-tHs~~~~a~~~~iP~  175 (370)
                      +++.. +... .....+ ..++        ..++|++++. ..+..+          +.   |. .+..++..+.+.. |
T Consensus        82 v~i~G-DG~f~~~~~el-~ta~--------~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G  150 (183)
T d1q6za3          82 IAVIG-DGSANYSISAL-WTAA--------QYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGY-G  150 (183)
T ss_dssp             EEEEE-HHHHTTTGGGH-HHHH--------HHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHH-T
T ss_pred             EEecc-ccccccccHHH-HHHH--------HhCCCEEEEEEeccccchhhhhhhcccccCcccccCCCccHHHHHHHc-C
Confidence            76644 4432 111112 2333        3577876554 322110          10   11 1112223344443 5


Q ss_pred             cEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          176 LKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       176 ~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      ++.+...+++|+...++.+++.++|++|-
T Consensus       151 ~~~~~v~~~~el~~al~~a~~~~gp~lie  179 (183)
T d1q6za3         151 VQALKADNLEQLKGSLQEALSAKGPVLIE  179 (183)
T ss_dssp             CEEEEESSHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CEEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence            67778899999999999999999999883

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.77  E-value=0.44  Score=40.48  Aligned_cols=151  Identities=15%  Similarity=0.128  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhcCC-CeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEccc
Q 017513           41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMT  116 (370)
Q Consensus        41 ~a~~~~L~~l~~~~~-~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~  116 (370)
                      ..+.++|.+++.++. +.++ ..|.|.. ..+. ...+.-+. |.+|+..+.  +=-..+..|.|++++ .-||+++...
T Consensus        14 ~~~~~~L~~~~~~~~~d~iv-v~D~G~~-~~~~-~~~~~~~~-p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~Vv~i~G   89 (227)
T d1t9ba3          14 QTVIKKLSKVANDTGRHVIV-TTGVGQH-QMWA-AQHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDG   89 (227)
T ss_dssp             HHHHHHHHHHHHTTCSCEEE-EECSSHH-HHHH-HHHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             HHHHHHHHHhcccCCCCEEE-EECCcHH-HHHH-HHHcCCCC-CceEeeecccccchhhHHHHHHHHhcCCCCeEEEeCC
Confidence            344567888877654 4443 4465521 0111 11122223 788886421  112345566666655 3467776644


Q ss_pred             chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC---------CC--C-CCcc-hHHHHHHHccCCCcEEEee
Q 017513          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA---------AG--V-GAQH-SHCYAAWYASVPGLKVLSP  181 (370)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~---------~~--~-G~tH-s~~~~a~~~~iP~~~V~~P  181 (370)
                       +.....--|-...+.        ..++|++++.  .++..         .+  . +... ..++..+-.++ |..=+.-
T Consensus        90 -DGsf~m~~~EL~Ta~--------r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v  159 (227)
T d1t9ba3          90 -DASFNMTLTELSSAV--------QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRV  159 (227)
T ss_dssp             -HHHHHHHGGGHHHHH--------HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEE
T ss_pred             -CcccccchHHHHHHh--------hcCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhc-ccceEee
Confidence             443211112223444        3577776664  23321         01  0 1111 12233444444 5666778


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEe
Q 017513          182 YSSEDARGLLKAAIRDPDPVVFLE  205 (370)
Q Consensus       182 ~d~~e~~~~l~~a~~~~~Pv~i~~  205 (370)
                      .+++|+...++++++.++|++|-.
T Consensus       160 ~~~~el~~al~~a~~~~~p~lieV  183 (227)
T d1t9ba3         160 KKQEELDAKLKEFVSTKGPVLLEV  183 (227)
T ss_dssp             CSHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE
Confidence            999999999999999999999853

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.21  E-value=1.1  Score=34.63  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=58.3

Q ss_pred             echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh---hccCCCC
Q 017513          246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE---ESFGYLD  322 (370)
Q Consensus       246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~---~~~~~l~  322 (370)
                      +|++-..|...++.|++.|+.+.++++.....-+...+.+.+.+++.+++.--.+ .|++...+...+.+   ..+  .+
T Consensus        14 tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~-~~~~~~~~~~~l~~~~~~~~--~~   90 (148)
T d1vmea1          14 YGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTLLEIIDKAN--YE   90 (148)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEE-TTEECHHHHHHHHHHHHHCC--CC
T ss_pred             CcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEeccc-CCccCchHHHHHHHHhhccc--CC
Confidence            3455555666666777889999999999998888888777788888776655433 46666666666543   222  23


Q ss_pred             CCEEEEecCCCCC
Q 017513          323 APVERIAGADVPM  335 (370)
Q Consensus       323 ~~~~~ig~~d~~~  335 (370)
                      .++..+|..+.+.
T Consensus        91 k~~~~fgs~g~~~  103 (148)
T d1vmea1          91 KPVLVFGVHGWAP  103 (148)
T ss_dssp             CEEEEEEECCCCC
T ss_pred             CEEEEEEcCCCcc
Confidence            4566676555443

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.83  E-value=0.31  Score=40.28  Aligned_cols=113  Identities=18%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             hCCCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCC
Q 017513           81 YGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA  155 (370)
Q Consensus        81 ~~p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~  155 (370)
                      +.|.||+..+.  +=-..+++|.|++++- -|++++... +... .....+ ..+.        ..++|++++. ..+..
T Consensus        42 ~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~G-DG~f~~~~~el-~t~~--------~~~l~~~iiv~nN~~~  111 (192)
T d1ozha3          42 FRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSG-DGGFLQSSMEL-ETAV--------RLKANVLHLIWVDNGY  111 (192)
T ss_dssp             CCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEE-HHHHHHHTTHH-HHHH--------HHTCCEEEEEEECSBC
T ss_pred             CCCceeecccccccccccccchhHHHhhcccccceeecc-cccccchhhhH-HHHh--------hhcCceeEEEEcCCCc
Confidence            34888887421  0012467777777763 456665544 3332 222222 2233        2467766654 22211


Q ss_pred             C----------C--CCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513          156 A----------G--VGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (370)
Q Consensus       156 ~----------~--~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~  204 (370)
                      +          .  .|... ..++.++..++ |+.-+...+++|+...++++++.++|++|-
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe  172 (192)
T d1ozha3         112 NMVAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVVA  172 (192)
T ss_dssp             HHHHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEEE
T ss_pred             cccccccccccCccccCcCCCCCHHHHHHHh-ccccEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence            1          0  11111 12334455554 678889999999999999999999999984

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=84.27  E-value=5.2  Score=30.52  Aligned_cols=72  Identities=13%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             cEEEEE---echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017513          240 DVTITA---FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE  315 (370)
Q Consensus       240 dv~Iia---~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~  315 (370)
                      +++||-   ||++-..|...++.|+++|+.+.++|+...   |.+.+...+.+++.+++.--. ..|++...+..++..
T Consensus         4 Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~---~~~~~~~~l~~~d~vi~Gspt-~~~~~~~~~~~~l~~   78 (152)
T d1e5da1           4 KVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC---HHSQIMSEISDAGAVIVGSPT-HNNGILPYVAGTLQY   78 (152)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS---CHHHHHHHHHTCSEEEEECCC-BTTBCCHHHHHHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccC---ChhhhccchhhCCEEEEeccc-cCCccCchhHHHHHH
Confidence            455553   567777777778888899999999987643   445555567777766654433 357777777766643

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.18  E-value=2.1  Score=35.17  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=61.4

Q ss_pred             CCcEeechhhH--HHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC--
Q 017513           83 PERVLDTPITE--AGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA--  155 (370)
Q Consensus        83 p~r~~~~GIaE--~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~--  155 (370)
                      +.||+..+---  -..++.|.|++++- -|++++... +...-.--|-...++        ..++|++++.  .+|..  
T Consensus        41 ~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~G-DGsf~m~~~eL~Ta~--------~~~lpi~iiV~NN~~~g~~  111 (204)
T d1zpda3          41 GARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVG-DGSFQLTAQEVAQMV--------RLKLPVIIFLINNYGYTIE  111 (204)
T ss_dssp             TCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEEE-HHHHHHHGGGHHHHH--------HTTCCCEEEEEECSSCHHH
T ss_pred             CCeEEcCCCCcccchhhHHHHHHHHhCCCCceecccc-ccceeeeecccchhh--------hcccccceEEEeccccccc
Confidence            56777644321  13566777777763 466666544 443211112222333        3577876665  23321  


Q ss_pred             --CCCC---CcchHHHHHH---H-----ccCCCcEEEeeCCHHHHHHHHHHHHh-CCCCEEEE
Q 017513          156 --AGVG---AQHSHCYAAW---Y-----ASVPGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL  204 (370)
Q Consensus       156 --~~~G---~tHs~~~~a~---~-----~~iP~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~i~  204 (370)
                        ...+   ..+..++..+   +     ..-.|+.-+...++.|+...++.++. .++|++|-
T Consensus       112 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~~~~gp~lie  174 (204)
T d1zpda3         112 VMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIE  174 (204)
T ss_dssp             HTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             ceeccccccccchhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence              1111   1111112111   1     12347788899999999999999985 58999883