Citrus Sinensis ID: 017546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Secondary Structure (PSIPRED)
ccccccHHcccccccccccccccccccEEEEccccccccccEEEEEEEccccccEEEEEEEEcccccccccccEEcccccccEEEEEEEEEcccccccccEEEEcccEEEEEccccEEEcccccccccEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEcccccccccccEEEEccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEEccccccccEEEEEccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccccccccccEEEccccccccccccEEEEEEEccccEEEEEEEEEccccccccccEccccccccccEEEEEEEEcccHcHcccHEEEcccEEEEEcEEEEEccccccccEEEcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEccccccccccccEEEEEcccHHHHHHHccccccccccccHccccHHcccccccccccccccccccccccccccccccccccccHHHccccEEEEccccccccccccccEEEEEccccEEEEEEEEEccccccccccEcccccccccccEEEEEEccHHHHHHHHHcccccEEEcccccc
Coil and Loop (DISEMBL)
MENNKEEIVDVGSVVEavsaddsdaplyQVESLCMRCGENGVTRFLLTLIPHFRKVLLSafecphcgernnevqfageiqprgcnyslkvpssdqkmfhrqvvksesatikipeldfeippeaqrgslstVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRAcakgdstftfilddpagnsfienlyapspdpslnikfyertPEQQALLGylvdpsqqgessnvvpseglsstsdkreprgsvgavaghraiaqSNSAEIADALFrysapeevmtfpstcgacaasCETRMFMTRIPYFQEVIVMASTcdacgyrnselkpggripekgkRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Flexible Loop (DISEMBL)
mennkeeiVDVGSVveavsaddsdaPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKsesatikipeldfeippeaqrgslstVEGILVRAADELEALQEerkkldpqtAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVpseglsstsdkrepRGSVGAVAGhraiaqsnsaEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRnselkpggripekgkRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Low Complexity Region (SEG)
MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Disordered region (IsUnstruct)
************SVVEAV*****DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLK*****************************************VEGILVRA*******************EAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAP****SLNIKFYERT**QQALLGYLV**************************************************LFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISI**
Disordered Region (DISOPRED)
**************************LYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEE****DPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVD*************************************************LFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELK****IPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Disordered Region (DISEMBL)
********VDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPS****************************AVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Disordered Region (DISPRO)
************************APLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLV*************************************************ALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLI*IAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSxxxxxxxxxxxxxxxxxxxxxRKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
P53303	486	Zinc finger protein ZPR1	yes	no	0.845	0.641	0.433	6e-69
Q62384	459	Zinc finger protein ZPR1	yes	no	0.813	0.653	0.390	6e-66
Q2TBX0	459	Zinc finger protein ZPR1	yes	no	0.810	0.651	0.382	1e-64
O13724	459	Zinc finger protein zpr1	yes	no	0.894	0.718	0.398	2e-64
A9CB27	459	Zinc finger protein ZPR1	N/A	no	0.794	0.638	0.380	3e-64
O75312	459	Zinc finger protein ZPR1	yes	no	0.794	0.638	0.380	3e-64
Q55E13	477	Zinc finger protein ZPR1	yes	no	0.802	0.620	0.398	6e-60
O16999	455	Zinc finger protein ZPR1	yes	no	0.875	0.709	0.349	6e-55
O58960	223	Uncharacterized ZPR1-like	yes	no	0.409	0.677	0.333	1e-11
Q57950	198	Uncharacterized ZPR1-like	yes	no	0.387	0.722	0.363	2e-09

>sp|P53303|ZPR1_YEAST Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZPR1 PE=1 SV=1

 Score =  261 bits (667), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 25/337 (7%)

Query: 26  PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCN 85
           P+ ++ESLCM CG+NG TR LLT IP+FR++++ +F+CPHCG +N E+Q A +IQ +G  
Sbjct: 46  PVQEIESLCMNCGKNGTTRLLLTSIPYFREIIIMSFDCPHCGFKNCEIQPASQIQEKGSR 105

Query: 86  YSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEAL 145
           Y LKV   +   F+RQV+KSE+AT K  ELD EIP  A+RG L+TVEG+L    D+L   
Sbjct: 106 YVLKVECRED--FNRQVIKSETATCKFVELDIEIP--AKRGQLTTVEGLLSEMIDDLSQD 161

Query: 146 QEERKKLDPQTAEAIDQFLLKLRA---CAKGDSTFTFILDDPAGNSFIENLYAPS-PDPS 201
           QE RK +D    + ID F+ K+++   C       TFILDDPAGNS+IE  Y P  P   
Sbjct: 162 QEMRKSIDEALYKKIDDFIQKVKSYINCEPNTIPITFILDDPAGNSWIE--YKPGEPQHK 219

Query: 202 LNIKFYERTPEQQALLGYLV-DPSQQGESSNVVPSEGLSSTSDK-REPRGSVGAVAGHRA 259
            +   Y RT EQ   +G +  D  +Q         E L   +++ R P  SV        
Sbjct: 220 WSHTQYVRTDEQNVQVGIITRDQLEQRRQ------EQLKQLANRERNPSESV-------K 266

Query: 260 IAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDA 319
           +  +N   ++DA    +   EV TF ++C +C   CET M    IP+F+EVI+M++ CD 
Sbjct: 267 VGSANPQFLSDATDIENFNNEVQTFRASCPSCTQECETHMKPVNIPHFKEVIIMSTVCDH 326

Query: 320 CGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           CGY+++E+K GG IP+KG+RITL+  +  DLSRD++K
Sbjct: 327 CGYKSNEVKTGGAIPDKGRRITLYCDDAADLSRDILK 363

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q62384|ZPR1_MOUSE Zinc finger protein ZPR1 OS=Mus musculus GN=Znf259 PE=1 SV=1

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 202/346 (58%), Gaps = 46/346 (13%)

Query: 11  VGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70
            G +   +SA+D +    ++ESLCM C  NG TR LLT IP FR++++S+F C HCG  N
Sbjct: 28  TGPLFRPLSAEDEEQQPTEIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNN 87

Query: 71  NEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLST 130
            E+Q AG IQ +G  Y+L V S  Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+T
Sbjct: 88  TEIQSAGRIQDQGVRYTLTVRS--QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTT 145

Query: 131 VEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFI 190
           VEG++ RA   LE  Q  R+ ++   AE ID+F+ KL+   +  S FT ++DDP+GNSF+
Sbjct: 146 VEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFV 205

Query: 191 ENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGS 250
           EN +AP  D +L I +Y+RTP+Q  +LG   +  ++      + +E L            
Sbjct: 206 ENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQ----------- 254

Query: 251 VGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEV 310
                                 F  + PE           C A  +T M + +IP+F+EV
Sbjct: 255 ----------------------FNTNCPE-----------CNAPAQTNMKLVQIPHFKEV 281

Query: 311 IVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           I+MA+ C+ CG+R +E+K GG +   G RITL + + +D++RDL+K
Sbjct: 282 IIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLK 327

May be a signaling molecule that communicates mitogenic signals from the cytoplasm to the nucleus.

Mus musculus (taxid: 10090)

>sp|Q2TBX0|ZPR1_BOVIN Zinc finger protein ZPR1 OS=Bos taurus GN=ZNF259 PE=2 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 197/345 (57%), Gaps = 46/345 (13%)

Query: 12  GSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71
           G +   +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N 
Sbjct: 29  GHLFRPISAEDEEQQPTEIESLCMNCYRNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNT 88

Query: 72  EVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTV 131
           E+Q AG IQ +G  Y+L V +  Q+   R+VVK++SAT +IPELDFEIP  +Q+G+L+TV
Sbjct: 89  EIQSAGRIQDQGVRYTLTVRA--QEDMDREVVKTDSATTRIPELDFEIPAFSQKGALTTV 146

Query: 132 EGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIE 191
           EG++ RA   LE  Q  R+  +   AE ID+F+ KL+   +  S FT I+DDP+GNSF+E
Sbjct: 147 EGLISRAISGLEQDQPTRRANEEAVAERIDEFIAKLKELKQVASPFTLIIDDPSGNSFVE 206

Query: 192 NLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSV 251
           N +AP  D +L I  Y RT +Q+ +LG   +  ++      + +E L             
Sbjct: 207 NPHAPRKDDALVITHYNRTLQQEEMLGLQAEAPEEKPEEEDIRNEVLQ------------ 254

Query: 252 GAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVI 311
                                           F + C  C A  +T M + +IP+F+EVI
Sbjct: 255 --------------------------------FNTNCPECNAPAQTNMKLVQIPHFKEVI 282

Query: 312 VMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           +MA+ C+ CG+R +E+K GG +   G RIT  + + +D++RDL+K
Sbjct: 283 IMATNCENCGHRTNEVKSGGAVEPLGTRITFHITDPSDMTRDLLK 327

May be a signaling molecule that communicates mitogenic signals from the cytoplasm to the nucleus.

Bos taurus (taxid: 9913)

>sp|O13724|ZPR1_SCHPO Zinc finger protein zpr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zpr1 PE=3 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 212/366 (57%), Gaps = 36/366 (9%)

Query: 2   ENNKEEI-VDVGSVVEAVS-ADDSDAP-LYQVESLCMRCGENGVTRFLLTLIPHFRKVLL 58
           E  KEE+   +G+  + VS A+D +   + +VESLCM CG+NG T+ LLT+IP+FR+V+L
Sbjct: 3   EEKKEELFTSIGNAAQNVSTAEDREGNGVQEVESLCMECGKNGTTKLLLTVIPYFREVVL 62

Query: 59  SAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFE 118
            +FECPHCG +N +VQ A  IQP G   +  V   D++  +R VVKS+ A + IPE+  E
Sbjct: 63  MSFECPHCGFKNAQVQHAETIQPEGSKITFHV--EDKEDLNRTVVKSQEAIVSIPEIQLE 120

Query: 119 IPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFT 178
           IP   + G L+T+EGIL    D+L   QE RK+  PQ  + I+ F+ K+ +   G   FT
Sbjct: 121 IP--GRLGQLTTIEGILSNVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSGSVPFT 178

Query: 179 FILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGL 238
             +DD  GNS+IE       D    +  Y+RT EQ   LG LVD  Q        P +  
Sbjct: 179 ITVDDITGNSWIEMKPGRDGDRWSQVS-YKRTLEQNTKLG-LVDTDQ--------PEDVK 228

Query: 239 SSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETR 298
           + T++                   SN+ +  DA      P EV TF +TC +C+  C+T 
Sbjct: 229 TQTNNA------------------SNTLK-HDATAVEVDPNEVHTFHATCPSCSHQCDTH 269

Query: 299 MFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVC 358
           M +  IP+F+EVI+M++ CD CGYR++E+K GG IP KG++ITL V +  DLSRD++K  
Sbjct: 270 MKLLDIPHFKEVIIMSTVCDRCGYRSNEVKTGGEIPPKGRKITLKVMDAEDLSRDILKSE 329

Query: 359 NGAIQL 364
             ++++
Sbjct: 330 TASLKI 335

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A9CB27|ZPR1_PAPAN Zinc finger protein ZPR1 OS=Papio anubis GN=ZNF259 PE=3 SV=1

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 197/339 (58%), Gaps = 46/339 (13%)

Query: 18  VSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77
           +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N E+Q AG
Sbjct: 35  ISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAG 94

Query: 78  EIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVR 137
            +Q +G  Y+L V + +    +R+VVK++SAT +IPELDFEIP  +Q+G+L+TVEG++ R
Sbjct: 95  RVQDQGVRYTLTVRAPED--MNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLITR 152

Query: 138 AADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPS 197
           A   LE  Q  R+     TAE ID+F++KL+   +  S FT I+DDP+GNSF+EN +AP 
Sbjct: 153 AISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQ 212

Query: 198 PDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGH 257
            D SL I  Y RT  Q+ +LG                                   +   
Sbjct: 213 KDDSLVITHYNRTQHQKEMLG-----------------------------------LQEE 237

Query: 258 RAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTC 317
               +    ++ + + +++         + C  C A  +T M + +IP+F+EVI+MA+ C
Sbjct: 238 APAEKPEEEDLRNEVLQFN---------TNCPECNAPAQTNMKLVQIPHFKEVIIMATNC 288

Query: 318 DACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           + CG+R +E+K GG +   G RITL + + +D++RDL+K
Sbjct: 289 ENCGHRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLK 327

May be a signaling molecule that communicates mitogenic signals from the cytoplasm to the nucleus.

Papio anubis (taxid: 9555)

>sp|O75312|ZPR1_HUMAN Zinc finger protein ZPR1 OS=Homo sapiens GN=ZNF259 PE=1 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 197/339 (58%), Gaps = 46/339 (13%)

Query: 18  VSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77
           +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N E+Q AG
Sbjct: 35  ISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAG 94

Query: 78  EIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVR 137
            IQ +G  Y+L V + +    +R+VVK++SA  +IPELDFEIP  +Q+G+L+TVEG++ R
Sbjct: 95  RIQDQGVRYTLSVRALED--MNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITR 152

Query: 138 AADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPS 197
           A   LE  Q  R+     TAE ID+F++KL+   +  S FT I+DDP+GNSF+EN +AP 
Sbjct: 153 AISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQ 212

Query: 198 PDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGH 257
            D +L I  Y RT +Q+ +LG                                   +   
Sbjct: 213 KDDALVITHYNRTRQQEEMLG-----------------------------------LQEE 237

Query: 258 RAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTC 317
               +    ++ + + ++S         + C  C A  +T M + +IP+F+EVI+MA+ C
Sbjct: 238 APAEKPEEEDLRNEVLQFS---------TNCPECNAPAQTNMKLVQIPHFKEVIIMATNC 288

Query: 318 DACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           + CG+R +E+K GG +   G RITL + + +D++RDL+K
Sbjct: 289 ENCGHRTNEVKSGGAVEPLGTRITLHITDASDMTRDLLK 327

May be a signaling molecule that communicates mitogenic signals from the cytoplasm to the nucleus.

Homo sapiens (taxid: 9606)

>sp|Q55E13|ZPR1_DICDI Zinc finger protein ZPR1 homolog OS=Dictyostelium discoideum GN=zpr1 PE=3 SV=1

 Score =  231 bits (589), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 188/329 (57%), Gaps = 33/329 (10%)

Query: 29  QVESLCMRC-GENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYS 87
           ++ES C+ C  ENG+TR LLT +P F+++++ AF CP CG R++EV+  G  + +GC+  
Sbjct: 33  EIESYCVNCEAENGITRILLTKVPFFKEIMVFAFHCPECGFRSSEVRSGGSYELKGCHIE 92

Query: 88  LKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQE 147
           L V  + +   +RQ+VK E ATI IP LDFEIPP +  GSL+T+EGI+  A   L    E
Sbjct: 93  LNV--TKELDLNRQIVKMEKATISIPSLDFEIPP-SNNGSLNTIEGIIKEAITNLTNASE 149

Query: 148 ERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFY 207
               +  ++ E +  F+ KL      D  F  I+DDP+GNSFIEN  AP  D +L +  Y
Sbjct: 150 ----IHTESKEELLGFVSKLSNLLMVDEPFKIIVDDPSGNSFIENPNAPKADTNLKVTNY 205

Query: 208 ERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAE 267
            RT EQ A LG        G +      +   S  ++R    SV   +G          +
Sbjct: 206 TRTAEQNASLGL-------GINEEQQKQQQEDSKKNERVTTTSVSIPSG----------D 248

Query: 268 IADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327
           +AD         EV + P+ C  C    E +M +T IPYF+ +++MA +CD CGY+ +E+
Sbjct: 249 LAD--------REVYSLPNQCSYCGVMGECKMVLTDIPYFKSILLMAFSCDECGYKTNEI 300

Query: 328 KPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           KPGG I EKGK ITL V+++ DLSRD++K
Sbjct: 301 KPGGAISEKGKTITLRVESVEDLSRDILK 329

Dictyostelium discoideum (taxid: 44689)

>sp|O16999|ZPR1_CAEEL Zinc finger protein ZPR1 homolog OS=Caenorhabditis elegans GN=W03F9.1 PE=3 SV=2

 Score =  214 bits (546), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 189/358 (52%), Gaps = 35/358 (9%)

Query: 10  DVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69
           D   +   +SADD +A    V+S+C  C E+G TR + T IP++R V+L +FECPHCG +
Sbjct: 4   DSQDIYRNLSADDYEAAPIVVDSVCPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHK 63

Query: 70  NNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLS 129
           NNE+Q    +Q  G    L+V   +     RQ+VKSE A+I++PEL  EIP ++Q G ++
Sbjct: 64  NNEIQSGEAVQEHGTLIVLRVQKPED--LRRQLVKSEYASIEVPELQLEIPHKSQPGEVT 121

Query: 130 TVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSF 189
           TVEG+L R    L   QE+R+ LDP+ A  ID +L K+ +C +   T+T  L DP GN +
Sbjct: 122 TVEGVLERVHRGLSQDQEKRRLLDPEGASQIDAYLQKITSCMELGETWTLRLRDPTGNCY 181

Query: 190 IENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRG 249
           I+N      DP   I  Y R  +++ LL    D  ++ E      +    S  D      
Sbjct: 182 IQNPDVRHVDPRCIISHYHRNLDERKLLALADDNEEEEEVEPSAAAPEFKSYED------ 235

Query: 250 SVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQE 309
                                      A +EV+ F + C  C    E +M  T IP+FQ 
Sbjct: 236 ---------------------------AKQEVLHFATDCPNCHGPTEVKMKPTDIPFFQT 268

Query: 310 VIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISI 367
           VI+M+  CD CGY+++E+K GG I ++G R+++ ++   DL+RD++K    A+ +  I
Sbjct: 269 VIIMSLACDRCGYKSNEVKSGGAIRDQGCRMSVKLEKDLDLARDVLKTDTCALSIPEI 326

Caenorhabditis elegans (taxid: 6239)

>sp|O58960|Y1223_PYRHO Uncharacterized ZPR1-like protein PH1223 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1223 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 34  CMRCGENGVTRFL--LTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVP 91
           C  CG  G  + +  +  IP+F +V+ S   C  CG RN++V    E +PR   Y +KV 
Sbjct: 33  CPICGGKGTLKAIQFIHRIPYFGEVMESTVVCERCGYRNSDVIILEEREPR--LYEVKV- 89

Query: 92  SSDQKMFHRQVVKSESATIKIPELDFEIPP-EAQRGSLSTVEGILVRAADELEALQE-ER 149
             ++ +F R VV+S+S TI++ EL  +I P  A  G +S +EG+L RA + L   ++ + 
Sbjct: 90  EEEKDLFIR-VVRSKSGTIELEELGIKIEPGPAAEGFVSNIEGVLERAKEVLLMARDFKE 148

Query: 150 KKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNS 188
           ++ D +    ID+ L  +    +G    T  + DP GNS
Sbjct: 149 QENDREAVRRIDELLKYIEEVKEGKKPLTVRIMDPFGNS 187

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|Q57950|Y530_METJA Uncharacterized ZPR1-like protein MJ0530 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0530 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 25/168 (14%)

Query: 34  CMRCGENGVTRFLLTL----IPHFRKVLLSAFECPHCGERNNEVQFAGEI-QPRGCNYSL 88
           C  CG  G   F++T     IP+F  VL +   C  C  R ++V F  E+ +P+   Y L
Sbjct: 9   CPVCGGKGT--FVITSHQIDIPYFGPVLETTMICEKCNFRRSDV-FPLEVREPK--KYIL 63

Query: 89  KVPSSDQKMFHRQVVKSESATIKIPELDFEIPP-EAQRGSLSTVEGILVRAADELEAL-- 145
           K+ S  ++  +++VV+S SA I+IPEL  EI P     G +S VEG+L R  + L+ L  
Sbjct: 64  KIES--ERDLNKRVVRSSSAYIQIPELGVEIKPGPLAEGFVSNVEGVLNRVDNILQTLIR 121

Query: 146 ---QEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFI 190
               EE+KK     AE + + + KL+   +G    T IL DP G+S I
Sbjct: 122 WAETEEQKK----KAEELRERIKKLK---EGKEEATLILIDPLGHSAI 162

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
255575202	505	zinc finger protein, putative [Ricinus c	0.986	0.720	0.802	1e-172
224077448	506	predicted protein [Populus trichocarpa]	0.981	0.715	0.809	1e-171
356576557	495	PREDICTED: zinc finger protein ZPR1-like	0.986	0.735	0.786	1e-171
356521586	498	PREDICTED: zinc finger protein ZPR1-like	0.986	0.730	0.787	1e-169
356576559	508	PREDICTED: zinc finger protein ZPR1-like	0.986	0.716	0.759	1e-168
225423682	489	PREDICTED: zinc finger protein ZPR1 homo	0.964	0.728	0.784	1e-164
297805264	493	zinc finger (ZPR1-type) family protein [	0.978	0.732	0.772	1e-164
42568162	493	ZPR1 zinc-finger domain protein [Arabido	0.978	0.732	0.772	1e-163
356521588	507	PREDICTED: zinc finger protein ZPR1-like	0.986	0.717	0.752	1e-163
15242258	493	ZPR1 zinc-finger domain protein [Arabido	0.956	0.716	0.787	1e-162

>gi|255575202|ref|XP_002528505.1| zinc finger protein, putative [Ricinus communis] gi|223532065|gb|EEF33874.1| zinc finger protein, putative [Ricinus communis]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/370 (80%), Positives = 328/370 (88%), Gaps = 6/370 (1%)

Query: 1   MENN--KEEIVDVGSVVEAVSADDSD---APLYQVESLCMRCGENGVTRFLLTLIPHFRK 55
           MENN  KE+IVDV SVV+A+S DD +   APLYQVESLCMRCGENG+TR LLTLIPHFRK
Sbjct: 1   MENNSNKEQIVDVRSVVDAISNDDDNDNDAPLYQVESLCMRCGENGITRLLLTLIPHFRK 60

Query: 56  VLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPEL 115
           +LLSAFECPHCGERNNEVQFAGEIQPRGC+Y L++PS +QKM +RQVVKSESATIKIPEL
Sbjct: 61  ILLSAFECPHCGERNNEVQFAGEIQPRGCSYHLEIPSGNQKMLNRQVVKSESATIKIPEL 120

Query: 116 DFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDS 175
           DFEIPPEAQRGSLSTVEG LVRAADEL+ALQEERKK+DP+TAEAIDQFLL+LR+CA GDS
Sbjct: 121 DFEIPPEAQRGSLSTVEGTLVRAADELQALQEERKKVDPKTAEAIDQFLLRLRSCATGDS 180

Query: 176 TFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPS 235
           +FTFILDDPAGNSFIEN +APS DPSL+IKFYERTPEQQ  LGYL DPSQ GE+    PS
Sbjct: 181 SFTFILDDPAGNSFIENPFAPSSDPSLSIKFYERTPEQQVALGYLADPSQLGEAGESQPS 240

Query: 236 EGLSSTSDK-REPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAAS 294
           E   + S + REP GSVGAVAGHR IAQSNSAEIA+ALFRYSAPEEVMTFPSTCGAC + 
Sbjct: 241 ESTGTVSGQIREPHGSVGAVAGHRTIAQSNSAEIAEALFRYSAPEEVMTFPSTCGACTSR 300

Query: 295 CETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDL 354
           CETRMF+T IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGKRITL V+NI DLSRD+
Sbjct: 301 CETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKRITLHVENIKDLSRDV 360

Query: 355 IKVCNGAIQL 364
           IK     +++
Sbjct: 361 IKSDTAGVKV 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077448|ref|XP_002305256.1| predicted protein [Populus trichocarpa] gi|222848220|gb|EEE85767.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/367 (80%), Positives = 326/367 (88%), Gaps = 5/367 (1%)

Query: 3   NNKEEIVDVGSVVEAVS-ADDSD--APLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           +NKE+IVDV SVVEA+S AD++D   PLY+VESLCMRC ENG TRFLLTLIPHFRK+LLS
Sbjct: 5   DNKEQIVDVRSVVEAISTADNNDINVPLYEVESLCMRCRENGTTRFLLTLIPHFRKILLS 64

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFECPHCGERNNEVQFAGEIQPRGC YSL +PS DQK+ +RQVVKSESATIKIPELDFEI
Sbjct: 65  AFECPHCGERNNEVQFAGEIQPRGCCYSLDIPSGDQKILNRQVVKSESATIKIPELDFEI 124

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQRGSLST+EGILVRAADEL+ALQEERKK+DP+TAEAIDQFLLKLRACA GDS+F F
Sbjct: 125 PPEAQRGSLSTIEGILVRAADELQALQEERKKVDPKTAEAIDQFLLKLRACAAGDSSFKF 184

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIENL+APSPDPSLNIKFYERTPEQQ  LGY V  SQ G   +   SE  S
Sbjct: 185 ILDDPAGNSFIENLFAPSPDPSLNIKFYERTPEQQVALGYQVGQSQMGVPGDGPSSEVTS 244

Query: 240 STSD--KREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCET 297
           + SD  +REP GSVGA AGHRAIAQSNSAEIA+A+FRYSAPEEVMTFPSTCG+CA+SCET
Sbjct: 245 NVSDQMRREPHGSVGAAAGHRAIAQSNSAEIAEAIFRYSAPEEVMTFPSTCGSCASSCET 304

Query: 298 RMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKV 357
           RMF+T IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGK ITL VKN NDLSRD+IK 
Sbjct: 305 RMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKTITLCVKNANDLSRDVIKS 364

Query: 358 CNGAIQL 364
               +++
Sbjct: 365 DTAGVKV 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576557|ref|XP_003556397.1| PREDICTED: zinc finger protein ZPR1-like isoform 1 [Glycine max]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/365 (78%), Positives = 328/365 (89%), Gaps = 1/365 (0%)

Query: 1   MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSA 60
           M+ N+E+IVDVGSVVEAVSADD DAPLY +ESLCMRCGENG +RFLLTLIP+FRK+LLSA
Sbjct: 1   MDANREQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGTSRFLLTLIPNFRKILLSA 60

Query: 61  FECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIP 120
           FECPHCGERNNEVQFAGEIQPRGC YSL++PS +QKM +RQVVK+ESATIKIPELDFEIP
Sbjct: 61  FECPHCGERNNEVQFAGEIQPRGCCYSLEIPSCEQKMLNRQVVKAESATIKIPELDFEIP 120

Query: 121 PEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFI 180
           PEAQRGSLSTVEGIL+RAADEL+ALQEERKK+ P+TAEAIDQFL+KLRACAKG+S FTFI
Sbjct: 121 PEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLRACAKGESAFTFI 180

Query: 181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEG-LS 239
           LDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYLV  +    + +  P  G ++
Sbjct: 181 LDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVGSTHIEGTHDQAPERGEVT 240

Query: 240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
           +   +REP GS+GA AGHRAIAQSNS+EIA+ALFRY+APEEVMTFP++CGACAA CETRM
Sbjct: 241 ADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPTSCGACAARCETRM 300

Query: 300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCN 359
           F+T IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGK+ITL VKN+NDLSRD+IK   
Sbjct: 301 FVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLNVKNVNDLSRDVIKSDT 360

Query: 360 GAIQL 364
            ++++
Sbjct: 361 ASVKV 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521586|ref|XP_003529435.1| PREDICTED: zinc finger protein ZPR1-like isoform 1 [Glycine max]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/367 (78%), Positives = 325/367 (88%), Gaps = 3/367 (0%)

Query: 1   MENNKEEIV-DVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           M+ N+E+IV DVGSVVEAVSADD  APLY +ESLCMRC ENG+TRFLLT IP+FRK+LLS
Sbjct: 1   MDANREQIVVDVGSVVEAVSADDGHAPLYSIESLCMRCHENGITRFLLTSIPNFRKILLS 60

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFECPHCGERNNEVQFAGEIQPRGC YSL++PS  QKM +RQVVK+ESATIKIPELDFEI
Sbjct: 61  AFECPHCGERNNEVQFAGEIQPRGCCYSLEIPSGQQKMLNRQVVKAESATIKIPELDFEI 120

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQRGSLSTVEGIL+RAADEL+ LQEERKK+ P+TAEAIDQFL+KLRACA G+S FTF
Sbjct: 121 PPEAQRGSLSTVEGILMRAADELQTLQEERKKVAPETAEAIDQFLVKLRACATGESAFTF 180

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYLVD +      +  P  G +
Sbjct: 181 ILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTHIEGIHDETPEGGEA 240

Query: 240 STSD--KREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCET 297
            T+D  +REP GS+GA AGHRAIAQSNS+EIA+ALFRY+APEEVMTFPS+CGACAASCET
Sbjct: 241 VTADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPSSCGACAASCET 300

Query: 298 RMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKV 357
           RMF+T IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGKRITL VKN+NDLSRD+IK 
Sbjct: 301 RMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKRITLNVKNVNDLSRDVIKS 360

Query: 358 CNGAIQL 364
              ++++
Sbjct: 361 DTASVKV 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576559|ref|XP_003556398.1| PREDICTED: zinc finger protein ZPR1-like isoform 2 [Glycine max]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/378 (75%), Positives = 328/378 (86%), Gaps = 14/378 (3%)

Query: 1   MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSA 60
           M+ N+E+IVDVGSVVEAVSADD DAPLY +ESLCMRCGENG +RFLLTLIP+FRK+LLSA
Sbjct: 1   MDANREQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGTSRFLLTLIPNFRKILLSA 60

Query: 61  FECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIP 120
           FECPHCGERNNEVQFAGEIQPRGC YSL++PS +QKM +RQVVK+ESATIKIPELDFEIP
Sbjct: 61  FECPHCGERNNEVQFAGEIQPRGCCYSLEIPSCEQKMLNRQVVKAESATIKIPELDFEIP 120

Query: 121 PEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFI 180
           PEAQRGSLSTVEGIL+RAADEL+ALQEERKK+ P+TAEAIDQFL+KLRACAKG+S FTFI
Sbjct: 121 PEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLRACAKGESAFTFI 180

Query: 181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEG-LS 239
           LDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYLV  +    + +  P  G ++
Sbjct: 181 LDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVGSTHIEGTHDQAPERGEVT 240

Query: 240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
           +   +REP GS+GA AGHRAIAQSNS+EIA+ALFRY+APEEVMTFP++CGACAA CETRM
Sbjct: 241 ADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPTSCGACAARCETRM 300

Query: 300 FMTR-------------IPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKN 346
           F+T              IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGK+ITL VKN
Sbjct: 301 FVTSILLSFFILLLGYYIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLNVKN 360

Query: 347 INDLSRDLIKVCNGAIQL 364
           +NDLSRD+IK    ++++
Sbjct: 361 VNDLSRDVIKSDTASVKV 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423682|ref|XP_002277005.1| PREDICTED: zinc finger protein ZPR1 homolog isoform 1 [Vitis vinifera] gi|297737977|emb|CBI27178.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/358 (78%), Positives = 313/358 (87%), Gaps = 2/358 (0%)

Query: 1   MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSA 60
           ME + E++VDV SVVEA+S D+ DAPLYQVESLCMRC +NG TRFL T IPHFRK+LLSA
Sbjct: 1   MEKSGEQMVDVRSVVEAISTDNEDAPLYQVESLCMRCTQNGTTRFLFTEIPHFRKILLSA 60

Query: 61  FECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIP 120
           FECPHCGERNNEVQFAGE+QPRGC+YSL   + DQKM +RQVVKSESATIKIPELDFEIP
Sbjct: 61  FECPHCGERNNEVQFAGELQPRGCSYSLHFSAGDQKMLNRQVVKSESATIKIPELDFEIP 120

Query: 121 PEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFI 180
           PEAQ GSLSTVEGIL +A D+L+ALQEERKK+D QTAEAIDQFLLKL+ CA GDS+FTF 
Sbjct: 121 PEAQCGSLSTVEGILTKAVDDLQALQEERKKVDSQTAEAIDQFLLKLKPCATGDSSFTFN 180

Query: 181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSS 240
           LDDPAGNSFIEN +APSPDPSL IKFY+R+PEQQA LGYLVD SQ GES +    + + +
Sbjct: 181 LDDPAGNSFIENPFAPSPDPSLTIKFYKRSPEQQASLGYLVDSSQLGESCDEESIKEVKN 240

Query: 241 TSD--KREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETR 298
           TSD  KREP GS+GA AGHRAIAQ NSAEIA+ LFRYS PEEVMTFPSTCGACAA CETR
Sbjct: 241 TSDQMKREPHGSIGAAAGHRAIAQVNSAEIAENLFRYSTPEEVMTFPSTCGACAARCETR 300

Query: 299 MFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           MF+T IPYFQEVIVMAS+CD CGYRNSELKPGGRIP KGK+IT+ VKN+NDLSRD+IK
Sbjct: 301 MFVTNIPYFQEVIVMASSCDGCGYRNSELKPGGRIPVKGKKITVCVKNVNDLSRDVIK 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805264|ref|XP_002870516.1| zinc finger (ZPR1-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297316352|gb|EFH46775.1| zinc finger (ZPR1-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/365 (77%), Positives = 314/365 (86%), Gaps = 4/365 (1%)

Query: 1   MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           M+N  +E +DVGSVVEAVSAD S  APLY VES+CMRCGENG TRFLLTLIPHFRKVL+S
Sbjct: 1   MDNGNDEQIDVGSVVEAVSADHSIGAPLYVVESMCMRCGENGTTRFLLTLIPHFRKVLIS 60

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFEC HCGERNNEVQFAGEIQPRGC+Y L+V + D K+F RQVVKSESATIKIPELDFEI
Sbjct: 61  AFECQHCGERNNEVQFAGEIQPRGCSYHLEVSAGDVKIFDRQVVKSESATIKIPELDFEI 120

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQRGSLSTVEGIL RAADEL ALQEER+K+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct: 121 PPEAQRGSLSTVEGILSRAADELSALQEERRKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYL +PSQ G+S   + +   S
Sbjct: 181 ILDDPAGNSFIENPHAPSLDPSLTIKFYERTPEQQATLGYLTNPSQTGQSERSLET---S 237

Query: 240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
           ST     P G++GA AGHRAIAQSNS +I+D LFRY+APEEVMTFPSTCGACA  CETRM
Sbjct: 238 STQTTALPHGTIGATAGHRAIAQSNSTDISDNLFRYTAPEEVMTFPSTCGACAKLCETRM 297

Query: 300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCN 359
           F+T+IPYFQEVIVMASTCD CGYRNSELKPGG IPEKGK+ITL VKNI DLSRD+IK   
Sbjct: 298 FVTKIPYFQEVIVMASTCDDCGYRNSELKPGGAIPEKGKKITLSVKNITDLSRDVIKSDT 357

Query: 360 GAIQL 364
             +++
Sbjct: 358 AGVKI 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568162|ref|NP_198550.3| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi|334188048|ref|NP_001190429.1| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi|145651788|gb|ABP88119.1| At5g37340 [Arabidopsis thaliana] gi|332006783|gb|AED94166.1| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi|332006785|gb|AED94168.1| ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/365 (77%), Positives = 311/365 (85%), Gaps = 4/365 (1%)

Query: 1   MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           M+N  ++ +DVGSVVEAVSAD S  APLY VES+CMRCGENG TRFLLTLIPHFRKVL+S
Sbjct: 1   MDNGNDQQIDVGSVVEAVSADHSFGAPLYVVESMCMRCGENGTTRFLLTLIPHFRKVLIS 60

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFECPHCGERNNEVQFAGEIQPRGC+Y L+V + D K F RQVVKSESATIKIPELDFEI
Sbjct: 61  AFECPHCGERNNEVQFAGEIQPRGCSYHLEVSAGDVKTFDRQVVKSESATIKIPELDFEI 120

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQ GSLSTVEGIL RAADEL ALQEER+K+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct: 121 PPEAQSGSLSTVEGILSRAADELSALQEERRKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYL +PSQ G+S     S G  
Sbjct: 181 ILDDPAGNSFIENPHAPSLDPSLTIKFYERTPEQQATLGYLTNPSQTGQSER---SLGTP 237

Query: 240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
           ST     P G++GA AGHRAIAQSNS +I+D LFRYSAPEEVMTFPSTCGAC   CETRM
Sbjct: 238 STQTTALPHGTIGATAGHRAIAQSNSTDISDNLFRYSAPEEVMTFPSTCGACTKLCETRM 297

Query: 300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCN 359
           F+T+IPYFQEVIVMASTCD CGYRNSELKPGG IPEKGK+ITL VKNI DLSRD+IK   
Sbjct: 298 FVTKIPYFQEVIVMASTCDDCGYRNSELKPGGAIPEKGKKITLSVKNITDLSRDVIKSDT 357

Query: 360 GAIQL 364
             +++
Sbjct: 358 AGVKI 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521588|ref|XP_003529436.1| PREDICTED: zinc finger protein ZPR1-like isoform 2 [Glycine max]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/376 (75%), Positives = 322/376 (85%), Gaps = 12/376 (3%)

Query: 1   MENNKEEIV-DVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           M+ N+E+IV DVGSVVEAVSADD  APLY +ESLCMRC ENG+TRFLLT IP+FRK+LLS
Sbjct: 1   MDANREQIVVDVGSVVEAVSADDGHAPLYSIESLCMRCHENGITRFLLTSIPNFRKILLS 60

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFECPHCGERNNEVQFAGEIQPRGC YSL++PS  QKM +RQVVK+ESATIKIPELDFEI
Sbjct: 61  AFECPHCGERNNEVQFAGEIQPRGCCYSLEIPSGQQKMLNRQVVKAESATIKIPELDFEI 120

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQRGSLSTVEGIL+RAADEL+ LQEERKK+ P+TAEAIDQFL+KLRACA G+S FTF
Sbjct: 121 PPEAQRGSLSTVEGILMRAADELQTLQEERKKVAPETAEAIDQFLVKLRACATGESAFTF 180

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYLVD +      +  P  G +
Sbjct: 181 ILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTHIEGIHDETPEGGEA 240

Query: 240 STSD--KREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCET 297
            T+D  +REP GS+GA AGHRAIAQSNS+EIA+ALFRY+APEEVMTFPS+CGACAASCET
Sbjct: 241 VTADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPSSCGACAASCET 300

Query: 298 RMFMTRIPY---------FQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNIN 348
           RMF+T I +           ++IVMASTCD+CGYRNSELKPGGRIPEKGKRITL VKN+N
Sbjct: 301 RMFVTSILFIIFHTVIRVLFDLIVMASTCDSCGYRNSELKPGGRIPEKGKRITLNVKNVN 360

Query: 349 DLSRDLIKVCNGAIQL 364
           DLSRD+IK    ++++
Sbjct: 361 DLSRDVIKSDTASVKV 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242258|ref|NP_197640.1| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi|332005649|gb|AED93032.1| ZPR1 zinc-finger domain protein [Arabidopsis thaliana]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/357 (78%), Positives = 310/357 (86%), Gaps = 4/357 (1%)

Query: 1   MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
           M+N  ++ +DV SVVEAVSAD S  APLY VES+CMRC ENG TRFLLTLIPHFRKVL+S
Sbjct: 1   MDNKNDQDIDVRSVVEAVSADLSFGAPLYVVESMCMRCQENGTTRFLLTLIPHFRKVLIS 60

Query: 60  AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
           AFECPHCGERNNEVQFAGEIQPRGC Y+L+V + D K+F RQVVKSESATIKIPELDFEI
Sbjct: 61  AFECPHCGERNNEVQFAGEIQPRGCCYNLEVLAGDVKIFDRQVVKSESATIKIPELDFEI 120

Query: 120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
           PPEAQRGSLSTVEGIL RAADEL ALQEERKK+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct: 121 PPEAQRGSLSTVEGILARAADELSALQEERKKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query: 180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
           ILDDPAGNSFIEN +APSPDPSL IKFYERTPEQQA LGY+ +PSQ G+S     S G  
Sbjct: 181 ILDDPAGNSFIENPHAPSPDPSLTIKFYERTPEQQATLGYVANPSQAGQSEG---SLGAP 237

Query: 240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
           ST     P G++GA AGHRAIAQSNS +I+D LFRYSAPEEVMTFPSTCGAC   CETRM
Sbjct: 238 STKTAYVPNGTIGATAGHRAIAQSNSTDISDNLFRYSAPEEVMTFPSTCGACTEPCETRM 297

Query: 300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           F+T+IPYFQEVIVMASTCD+CGYRNSELKPGG IPEKGK+ITL V+NI DLSRD+IK
Sbjct: 298 FVTKIPYFQEVIVMASTCDSCGYRNSELKPGGAIPEKGKKITLSVRNITDLSRDVIK 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2171142	493	AT5G22480 [Arabidopsis thalian	0.956	0.716	0.787	9e-148
TAIR|locus:2169130	498	AT5G37340 [Arabidopsis thalian	0.978	0.724	0.751	1.4e-142
CGD|CAL0004036	509	ZPR1 [Candida albicans (taxid:	0.926	0.671	0.426	3.8e-69
UNIPROTKB|Q5A934	509	ZPR1 "Likely ZPR1 zinc finger	0.926	0.671	0.426	3.8e-69
RGD|1562173	459	Zfp259 "zinc finger protein 25	0.598	0.481	0.459	6.8e-69
MGI|MGI:1330262	459	Zfp259 "zinc finger protein 25	0.593	0.477	0.459	1.4e-68
UNIPROTKB|Q2TBX0	459	ZNF259 "Zinc finger protein ZP	0.593	0.477	0.454	6.8e-67
UNIPROTKB|F1PB28	460	ZNF259 "Uncharacterized protei	0.577	0.463	0.470	6.8e-67
UNIPROTKB|H7BZM7	430	ZNF259 "Zinc finger protein ZP	0.577	0.495	0.458	8.7e-67
UNIPROTKB|O75312	459	ZNF259 "Zinc finger protein ZP	0.577	0.464	0.458	8.7e-67

TAIR|locus:2171142 AT5G22480 [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 281/357 (78%), Positives = 310/357 (86%)

Query:     1 MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
             M+N  ++ +DV SVVEAVSAD S  APLY VES+CMRC ENG TRFLLTLIPHFRKVL+S
Sbjct:     1 MDNKNDQDIDVRSVVEAVSADLSFGAPLYVVESMCMRCQENGTTRFLLTLIPHFRKVLIS 60

Query:    60 AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
             AFECPHCGERNNEVQFAGEIQPRGC Y+L+V + D K+F RQVVKSESATIKIPELDFEI
Sbjct:    61 AFECPHCGERNNEVQFAGEIQPRGCCYNLEVLAGDVKIFDRQVVKSESATIKIPELDFEI 120

Query:   120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
             PPEAQRGSLSTVEGIL RAADEL ALQEERKK+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct:   121 PPEAQRGSLSTVEGILARAADELSALQEERKKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query:   180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
             ILDDPAGNSFIEN +APSPDPSL IKFYERTPEQQA LGY+ +PSQ G+S     S G  
Sbjct:   181 ILDDPAGNSFIENPHAPSPDPSLTIKFYERTPEQQATLGYVANPSQAGQSEG---SLGAP 237

Query:   240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
             ST     P G++GA AGHRAIAQSNS +I+D LFRYSAPEEVMTFPSTCGAC   CETRM
Sbjct:   238 STKTAYVPNGTIGATAGHRAIAQSNSTDISDNLFRYSAPEEVMTFPSTCGACTEPCETRM 297

Query:   300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
             F+T+IPYFQEVIVMASTCD+CGYRNSELKPGG IPEKGK+ITL V+NI DLSRD+IK
Sbjct:   298 FVTKIPYFQEVIVMASTCDSCGYRNSELKPGGAIPEKGKKITLSVRNITDLSRDVIK 354

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2169130 AT5G37340 [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 278/370 (75%), Positives = 306/370 (82%)

Query:     1 MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
             M+N  ++ +DVGSVVEAVSAD S  APLY VES+CMRCGENG TRFLLTLIPHFRKVL+S
Sbjct:     1 MDNGNDQQIDVGSVVEAVSADHSFGAPLYVVESMCMRCGENGTTRFLLTLIPHFRKVLIS 60

Query:    60 AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
             AFECPHCGERNNEVQFAGEIQPRGC+Y L+V + D K F RQVVKSESATIKIPELDFEI
Sbjct:    61 AFECPHCGERNNEVQFAGEIQPRGCSYHLEVSAGDVKTFDRQVVKSESATIKIPELDFEI 120

Query:   120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
             PPEAQ GSLSTVEGIL RAADEL ALQEER+K+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct:   121 PPEAQSGSLSTVEGILSRAADELSALQEERRKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query:   180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
             ILDDPAGNSFIEN +APS DPSL IKFYERTPEQQA LGYL +PSQ G+S     S G  
Sbjct:   181 ILDDPAGNSFIENPHAPSLDPSLTIKFYERTPEQQATLGYLTNPSQTGQSER---SLGTP 237

Query:   240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
             ST     P G++GA AGHRAIAQSNS +I+D LFRYSAPEEVMTFPSTCGAC   CETRM
Sbjct:   238 STQTTALPHGTIGATAGHRAIAQSNSTDISDNLFRYSAPEEVMTFPSTCGACTKLCETRM 297

Query:   300 FMTRI-----PYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDL 354
             F+T I         EVIVMASTCD CGYRNSELKPGG IPEKGK+ITL VKNI DLSRD+
Sbjct:   298 FVTSILSKLCSRSLEVIVMASTCDDCGYRNSELKPGGAIPEKGKKITLSVKNITDLSRDV 357

Query:   355 IKVCNGAIQL 364
             IK     +++
Sbjct:   358 IKSDTAGVKI 367

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

CGD|CAL0004036 ZPR1 [Candida albicans (taxid:5476)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 155/363 (42%), Positives = 223/363 (61%)

Query:     6 EEIVDVGSVVEAVSADDSDA-PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECP 64
             E+  +V + ++   A D++  P+ +VESLCM C +NGVTR LLT IP+FR+V++ +FECP
Sbjct:    33 EQAQEVDNAIKQTGAADAEGHPVQEVESLCMNCHKNGVTRMLLTRIPYFREVIIMSFECP 92

Query:    65 HCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQ 124
             HCG +N+E+Q A +I  +G  Y LKV   ++K F+RQ+VKSE+AT+K  ELD EIPP+  
Sbjct:    93 HCGFKNSEIQPAAQIAEKGARYVLKV--ENKKDFNRQIVKSETATVKFTELDIEIPPK-- 148

Query:   125 RGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRA---CAKGDSTFTFIL 181
             RG L  VEGIL    D+LE+ Q +R+K+ P+  E IDQ + K+++   C       T  +
Sbjct:   149 RGQLINVEGILQEMIDDLESDQPQRQKVQPEVYEKIDQVISKIKSFINCDPNTVPLTVTV 208

Query:   182 DDPAGNSFIENLYAPSPDPSLNIKFYE--RTPEQQALLGYLV--DPSQ--QGESSNV--V 233
             DDPAGNS+IE  Y P  +P+     YE  RT EQ   LG +   D +Q  Q E +N    
Sbjct:   209 DDPAGNSWIE--YVPG-EPTHKWAMYEYNRTAEQNVFLGLISADDVAQHRQAELANKKQA 265

Query:   234 PSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAA 293
                 +SS  +K + +    +   H     +     A  +  +S   EV TF +TC +C  
Sbjct:   266 TDSNISSNLNKEQSQSQSQSQEEHSNPHTTGFKSDASEIENFS--NEVQTFAATCSSCYK 323

Query:   294 SCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRD 353
              CET M    IP+F++VI+M++ CD CGY+++E+K GG IPEKGKRITL V +  DL+RD
Sbjct:   324 PCETHMKTVNIPHFKDVILMSTVCDHCGYKSNEVKTGGAIPEKGKRITLKVTDPEDLARD 383

Query:   354 LIK 356
             ++K
Sbjct:   384 ILK 386

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|Q5A934 ZPR1 "Likely ZPR1 zinc finger protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 155/363 (42%), Positives = 223/363 (61%)

Query:     6 EEIVDVGSVVEAVSADDSDA-PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECP 64
             E+  +V + ++   A D++  P+ +VESLCM C +NGVTR LLT IP+FR+V++ +FECP
Sbjct:    33 EQAQEVDNAIKQTGAADAEGHPVQEVESLCMNCHKNGVTRMLLTRIPYFREVIIMSFECP 92

Query:    65 HCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQ 124
             HCG +N+E+Q A +I  +G  Y LKV   ++K F+RQ+VKSE+AT+K  ELD EIPP+  
Sbjct:    93 HCGFKNSEIQPAAQIAEKGARYVLKV--ENKKDFNRQIVKSETATVKFTELDIEIPPK-- 148

Query:   125 RGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRA---CAKGDSTFTFIL 181
             RG L  VEGIL    D+LE+ Q +R+K+ P+  E IDQ + K+++   C       T  +
Sbjct:   149 RGQLINVEGILQEMIDDLESDQPQRQKVQPEVYEKIDQVISKIKSFINCDPNTVPLTVTV 208

Query:   182 DDPAGNSFIENLYAPSPDPSLNIKFYE--RTPEQQALLGYLV--DPSQ--QGESSNV--V 233
             DDPAGNS+IE  Y P  +P+     YE  RT EQ   LG +   D +Q  Q E +N    
Sbjct:   209 DDPAGNSWIE--YVPG-EPTHKWAMYEYNRTAEQNVFLGLISADDVAQHRQAELANKKQA 265

Query:   234 PSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAA 293
                 +SS  +K + +    +   H     +     A  +  +S   EV TF +TC +C  
Sbjct:   266 TDSNISSNLNKEQSQSQSQSQEEHSNPHTTGFKSDASEIENFS--NEVQTFAATCSSCYK 323

Query:   294 SCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRD 353
              CET M    IP+F++VI+M++ CD CGY+++E+K GG IPEKGKRITL V +  DL+RD
Sbjct:   324 PCETHMKTVNIPHFKDVILMSTVCDHCGYKSNEVKTGGAIPEKGKRITLKVTDPEDLARD 383

Query:   354 LIK 356
             ++K
Sbjct:   384 ILK 386

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

RGD|1562173 Zfp259 "zinc finger protein 259" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
 Identities = 103/224 (45%), Positives = 150/224 (66%)

Query:    10 DVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69
             D G +   +SA+D +    ++ESLCM C  NG TR LLT IP FR++++S+F C HCG  
Sbjct:    27 DTGPLFRPLSAEDEEQQPTEIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWN 86

Query:    70 NNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLS 129
             N E+Q AG IQ +G  Y+L V    Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+
Sbjct:    87 NTEIQSAGRIQDQGVRYTLTVKG--QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALT 144

Query:   130 TVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSF 189
             TVEG++ RA   LE  Q  R+ ++   AE ID+F+ KL+   +  S FT I+DDP+GNSF
Sbjct:   145 TVEGLISRAILGLEQDQPTRRAMEGAIAERIDEFIGKLKDLKQMASPFTLIIDDPSGNSF 204

Query:   190 IENLYAPSPDPSLNIKFYERTPEQQALLGYLVD-PSQQGESSNV 232
             +EN +AP  D +L I +Y+RTP+Q  +LG   + P ++ E  ++
Sbjct:   205 VENPHAPQKDSALVITYYDRTPQQAEMLGLQAEAPEEKSEEEDL 248

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA;ISO

MGI|MGI:1330262 Zfp259 "zinc finger protein 259" [Mus musculus (taxid:10090)]

 Score = 519 (187.8 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
 Identities = 102/222 (45%), Positives = 150/222 (67%)

Query:    12 GSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71
             G +   +SA+D +    ++ESLCM C  NG TR LLT IP FR++++S+F C HCG  N 
Sbjct:    29 GPLFRPLSAEDEEQQPTEIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 88

Query:    72 EVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTV 131
             E+Q AG IQ +G  Y+L V S  Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+TV
Sbjct:    89 EIQSAGRIQDQGVRYTLTVRS--QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTV 146

Query:   132 EGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIE 191
             EG++ RA   LE  Q  R+ ++   AE ID+F+ KL+   +  S FT ++DDP+GNSF+E
Sbjct:   147 EGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVE 206

Query:   192 NLYAPSPDPSLNIKFYERTPEQQALLGYLVD-PSQQGESSNV 232
             N +AP  D +L I +Y+RTP+Q  +LG   + P ++ E  ++
Sbjct:   207 NPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKAEEEDL 248

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2TBX0 ZNF259 "Zinc finger protein ZPR1" [Bos taurus (taxid:9913)]

 Score = 507 (183.5 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 101/222 (45%), Positives = 147/222 (66%)

Query:    12 GSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71
             G +   +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N 
Sbjct:    29 GHLFRPISAEDEEQQPTEIESLCMNCYRNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNT 88

Query:    72 EVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTV 131
             E+Q AG IQ +G  Y+L V +  Q+   R+VVK++SAT +IPELDFEIP  +Q+G+L+TV
Sbjct:    89 EIQSAGRIQDQGVRYTLTVRA--QEDMDREVVKTDSATTRIPELDFEIPAFSQKGALTTV 146

Query:   132 EGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIE 191
             EG++ RA   LE  Q  R+  +   AE ID+F+ KL+   +  S FT I+DDP+GNSF+E
Sbjct:   147 EGLISRAISGLEQDQPTRRANEEAVAERIDEFIAKLKELKQVASPFTLIIDDPSGNSFVE 206

Query:   192 NLYAPSPDPSLNIKFYERTPEQQALLGYLVD-PSQQGESSNV 232
             N +AP  D +L I  Y RT +Q+ +LG   + P ++ E  ++
Sbjct:   207 NPHAPRKDDALVITHYNRTLQQEEMLGLQAEAPEEKPEEEDI 248

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PB28 ZNF259 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 102/217 (47%), Positives = 147/217 (67%)

Query:    18 VSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77
             +SA+D +    ++ESLCM C  NG+TR LLT IP FR+V++S+F C HCG  N E+Q AG
Sbjct:    35 ISAEDEEQQPTEIESLCMNCYRNGMTRLLLTKIPFFREVIVSSFSCEHCGWNNTEIQSAG 94

Query:    78 EIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVR 137
              IQ +G  Y+L V +  Q+  +RQVVK++SAT +IPELDFEIP  +Q+G+L+TVEG++ R
Sbjct:    95 RIQDQGVRYTLTVGA--QEDMNRQVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISR 152

Query:   138 AADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPS 197
             A   LE  Q  R+  +   AE ID+F++KL+   +  S FT I+DDP+GNSF+EN +AP 
Sbjct:   153 AISGLEQDQPARRANEEPVAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQ 212

Query:   198 PDPSLNIKFYERTPEQQALLGYLVD--PSQQGESSNV 232
              D +L I  Y RT +Q+ +LG   +  P ++ E  ++
Sbjct:   213 KDLALIITHYNRTLQQEEMLGLQAEAAPEEKPEEEDL 249

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H7BZM7 ZNF259 "Zinc finger protein ZPR1" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 99/216 (45%), Positives = 146/216 (67%)

Query:    18 VSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77
             +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N E+Q AG
Sbjct:    35 ISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAG 94

Query:    78 EIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVR 137
              IQ +G  Y+L V + +    +R+VVK++SA  +IPELDFEIP  +Q+G+L+TVEG++ R
Sbjct:    95 RIQDQGVRYTLSVRALED--MNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITR 152

Query:   138 AADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPS 197
             A   LE  Q  R+     TAE ID+F++KL+   +  S FT I+DDP+GNSF+EN +AP 
Sbjct:   153 AISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQ 212

Query:   198 PDPSLNIKFYERTPEQQALLGYLVD-PSQQGESSNV 232
              D +L I  Y RT +Q+ +LG   + P+++ E  ++
Sbjct:   213 KDDALVITHYNRTRQQEEMLGLQEEAPAEKPEEEDL 248

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75312 ZNF259 "Zinc finger protein ZPR1" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 99/216 (45%), Positives = 146/216 (67%)

Query:    18 VSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77
             +SA+D +    ++ESLCM C  NG+TR LLT IP FR++++S+F C HCG  N E+Q AG
Sbjct:    35 ISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAG 94

Query:    78 EIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVR 137
              IQ +G  Y+L V + +    +R+VVK++SA  +IPELDFEIP  +Q+G+L+TVEG++ R
Sbjct:    95 RIQDQGVRYTLSVRALED--MNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITR 152

Query:   138 AADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPS 197
             A   LE  Q  R+     TAE ID+F++KL+   +  S FT I+DDP+GNSF+EN +AP 
Sbjct:   153 AISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQ 212

Query:   198 PDPSLNIKFYERTPEQQALLGYLVD-PSQQGESSNV 232
              D +L I  Y RT +Q+ +LG   + P+++ E  ++
Sbjct:   213 KDDALVITHYNRTRQQEEMLGLQEEAPAEKPEEEDL 248

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
smart00709	160	smart00709, Zpr1, Duplicated domain in the epiderm	8e-74
pfam03367	160	pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	4e-68
COG1779	201	COG1779, COG1779, C4-type Zn-finger protein [Gener	2e-36
TIGR00310	192	TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	5e-28
smart00709	160	smart00709, Zpr1, Duplicated domain in the epiderm	5e-27
pfam03367	160	pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	7e-25
TIGR00340	163	TIGR00340, zpr1_rel, ZPR1-related zinc finger prot	3e-22
COG1779	201	COG1779, COG1779, C4-type Zn-finger protein [Gener	2e-14
TIGR00310	192	TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	3e-11
TIGR00340	163	TIGR00340, zpr1_rel, ZPR1-related zinc finger prot	3e-04

>gnl|CDD|128949 smart00709, Zpr1, Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

 Score =  225 bits (577), Expect = 8e-74
 Identities = 88/162 (54%), Positives = 111/162 (68%), Gaps = 3/162 (1%)

Query: 32  SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVP 91
           S C  CG NG TR LLT IP+FR+V++ +FEC HCG RNNEV+  G I+P+G   +LKV 
Sbjct: 1   SDCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKV- 59

Query: 92  SSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELE-ALQEERK 150
               +  +R VVKSE+ATI IPELD EIPP    G ++TVEG+L R  + L  A+QE R 
Sbjct: 60  -ESPEDLNRDVVKSETATISIPELDLEIPPGPLGGFITTVEGLLSRVREVLSQAIQETRD 118

Query: 151 KLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIEN 192
             DP+T E ID+FL KL+   +G   FT ILDDPAGNS+I+N
Sbjct: 119 DSDPETKEKIDEFLEKLKELIEGKEPFTLILDDPAGNSYIQN 160

Also present in archaeal proteins. Length = 160

>gnl|CDD|217516 pfam03367, zf-ZPR1, ZPR1 zinc-finger domain

 Score =  211 bits (539), Expect = 4e-68
 Identities = 82/162 (50%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 31  ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKV 90
           ES C  CG  G TR  LT IP+FR+V++ +F C HCG R+NEVQ  GEI+P+G  Y+LKV
Sbjct: 1   ESDCPVCGGEGTTRMKLTDIPYFREVIIMSFICEHCGYRSNEVQSGGEIEPKGTRYTLKV 60

Query: 91  PSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERK 150
              D++  +R VVKSE+A+I IPEL  EIP  A  G  +TVEG+L R  + L   QE+R 
Sbjct: 61  --EDEEDLNRDVVKSETASISIPELGLEIPGPALGGRFTTVEGLLERVIEGLSQDQEKRD 118

Query: 151 KLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIEN 192
             D +T + ID+FL KL+   +G   FT IL+DP GNS+I+N
Sbjct: 119 SEDEETKKKIDEFLEKLKELIEGKEPFTLILEDPFGNSYIQN 160

The zinc-finger protein ZPR1 is ubiquitous among eukaryotes. It is indeed known to be an essential protein in yeast. In quiescent cells, ZPR1 is localised to the cytoplasm. But in proliferating cells treated with EGF or with other mitogens, ZPR1 accumulates in the nucleolus. ZPR1 interacts with the cytoplasmic domain of the inactive EGF receptor (EGFR) and is thought to inhibit the basal protein tyrosine kinase activity of EGFR. This interaction is disrupted when cells are treated with EGF, though by themselves, inactive EGFRs are not sufficient to sequester ZPR1 to the cytoplasm. Upon stimulation by EGF, ZPR1 directly binds the eukaryotic translation elongation factor-1alpha (eEF-1alpha) to form ZPR1/eEF-1alpha complexes. These move into the nucleus, localising particularly at the nucleolus. Indeed, the interaction between ZPR1 and eEF-1alpha has been shown to be essential for normal cellular proliferation, and ZPR1 is thought to be involved in pre-ribosomal RNA expression. The ZPR1 domain consists of an elongation initiation factor 2-like zinc finger and a double-stranded beta helix with a helical hairpin insertion. ZPR1 binds preferentially to GDP-bound eEF1A but does not directly influence the kinetics of nucleotide exchange or GTP hydrolysis. The alignment for this family shows a domain of which there are two copies in ZPR1 proteins. This family also includes several hypothetical archaeal proteins (from both Crenarchaeota and Euryarchaeota), which only contain one copy of the aligned region. This similarity between ZPR1 and archaeal proteins was not previously noted. Length = 160

>gnl|CDD|224693 COG1779, COG1779, C4-type Zn-finger protein [General function prediction only]

 Score =  130 bits (330), Expect = 2e-36
 Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 11/180 (6%)

Query: 34  CMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSS 93
           C  CG        L  IP+F +VL+S   C  CG R+ +V+   E +PR   Y+LKV S 
Sbjct: 17  CPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTDVKTLEEREPR--RYTLKVESE 74

Query: 94  DQKMFHRQVVKSESATIKIPELDFEIPP-EAQRGSLSTVEGILVRAADELEALQEERKKL 152
           +      +VV+S+SATI IPEL  EI P  A  G ++T+EG+L R  + LE       KL
Sbjct: 75  ED--LSARVVRSKSATIYIPELGLEIEPGPASEGFITTIEGVLERVYEVLET----AIKL 128

Query: 153 DPQ--TAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERT 210
                + +  ++ L ++    +G   FT I++DP GNS I +  AP    S       +T
Sbjct: 129 AEDDESKKKAEELLKRIDEAIEGKRKFTLIIEDPLGNSAIISEKAPDEKLSKEEAEKLKT 188

Length = 201

>gnl|CDD|232914 TIGR00310, ZPR1_znf, ZPR1 zinc finger domain

 Score =  108 bits (271), Expect = 5e-28
 Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 12/190 (6%)

Query: 34  CMRCGENGVTRFLLT---LIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKV 90
           C  CG       ++     IP+F +VL ++  C HCG R+N+V+  G  +P+   Y LK+
Sbjct: 3   CPSCGGEC--ETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPK--RYILKI 58

Query: 91  PSSDQKMFHRQVVKSESATIKIPELDFEIPP-EAQRGSLSTVEGILVRAADELEALQEER 149
              D+   +R+VVKSESATI+IPEL  +I P     G ++ +EG+L R  +ELE     +
Sbjct: 59  --DDEADLNRRVVKSESATIRIPELGLDIEPGPTSGGFITNLEGVLRRVEEELETAIRWQ 116

Query: 150 KKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPS-LNIKFYE 208
            + +     A ++ L +L+   +G   FT IL+DP G S+I+N+YAP    S   I+  +
Sbjct: 117 SEDEETKKRA-EEILERLKEAIEGKEKFTVILEDPLGGSYIQNVYAPKEILSEEEIEDLK 175

Query: 209 RTPEQQALLG 218
              E    LG
Sbjct: 176 TGKEINEDLG 185

An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction. Length = 192

>gnl|CDD|128949 smart00709, Zpr1, Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

 Score =  104 bits (261), Expect = 5e-27
 Identities = 39/79 (49%), Positives = 54/79 (68%)

Query: 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVK 345
           S C +C  +  TRM +T IPYF+EVI+M+  C+ CGYRN+E+K GG I  KG RITL V+
Sbjct: 1   SDCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKVE 60

Query: 346 NINDLSRDLIKVCNGAIQL 364
           +  DL+RD++K     I +
Sbjct: 61  SPEDLNRDVVKSETATISI 79

Also present in archaeal proteins. Length = 160

>gnl|CDD|217516 pfam03367, zf-ZPR1, ZPR1 zinc-finger domain

 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 36/80 (45%), Positives = 52/80 (65%)

Query: 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFV 344
            S C  C     TRM +T IPYF+EVI+M+  C+ CGYR++E++ GG I  KG R TL V
Sbjct: 1   ESDCPVCGGEGTTRMKLTDIPYFREVIIMSFICEHCGYRSNEVQSGGEIEPKGTRYTLKV 60

Query: 345 KNINDLSRDLIKVCNGAIQL 364
           ++  DL+RD++K    +I +
Sbjct: 61  EDEEDLNRDVVKSETASISI 80

The zinc-finger protein ZPR1 is ubiquitous among eukaryotes. It is indeed known to be an essential protein in yeast. In quiescent cells, ZPR1 is localised to the cytoplasm. But in proliferating cells treated with EGF or with other mitogens, ZPR1 accumulates in the nucleolus. ZPR1 interacts with the cytoplasmic domain of the inactive EGF receptor (EGFR) and is thought to inhibit the basal protein tyrosine kinase activity of EGFR. This interaction is disrupted when cells are treated with EGF, though by themselves, inactive EGFRs are not sufficient to sequester ZPR1 to the cytoplasm. Upon stimulation by EGF, ZPR1 directly binds the eukaryotic translation elongation factor-1alpha (eEF-1alpha) to form ZPR1/eEF-1alpha complexes. These move into the nucleus, localising particularly at the nucleolus. Indeed, the interaction between ZPR1 and eEF-1alpha has been shown to be essential for normal cellular proliferation, and ZPR1 is thought to be involved in pre-ribosomal RNA expression. The ZPR1 domain consists of an elongation initiation factor 2-like zinc finger and a double-stranded beta helix with a helical hairpin insertion. ZPR1 binds preferentially to GDP-bound eEF1A but does not directly influence the kinetics of nucleotide exchange or GTP hydrolysis. The alignment for this family shows a domain of which there are two copies in ZPR1 proteins. This family also includes several hypothetical archaeal proteins (from both Crenarchaeota and Euryarchaeota), which only contain one copy of the aligned region. This similarity between ZPR1 and archaeal proteins was not previously noted. Length = 160

>gnl|CDD|129440 TIGR00340, zpr1_rel, ZPR1-related zinc finger protein

 Score = 91.8 bits (228), Expect = 3e-22
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 7/143 (4%)

Query: 50  IPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESAT 109
           IP+F K++LS + C  CG R+ +V    E +P    Y +K+ + D  +F   V +S SAT
Sbjct: 18  IPYFGKIMLSTYICEKCGYRSTDVYQLEEKEPV--RYIIKIENEDD-LFTL-VYRSRSAT 73

Query: 110 IKIPELDFEIPP-EAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLR 168
           I+IPEL  +I P  A +G +S +EG+L R  + L+         D +  +  ++ L ++R
Sbjct: 74  IRIPELGIKIEPGPASQGYISNIEGVLERIEEVLDTAS--DDDEDDEAVKKCEEILKRIR 131

Query: 169 ACAKGDSTFTFILDDPAGNSFIE 191
              +G   FT I++DP GNSFIE
Sbjct: 132 EVIEGKFKFTLIIEDPFGNSFIE 154

This model describes a strictly archaeal family homologous to the domain duplicated in the eukaryotic zinc-binding protein ZPR1. ZPR1 was shown experimentally to bind approximately two moles of zinc; each copy of the domain contains a putative zinc finger of the form CXXCX(25)CXXC. ZPR1 binds the tyrosine kinase domain of epidermal growth factor receptor, but is displaced by receptor activation and autophosphorylation after which it redistributes in part to the nucleus. The proteins described by This model by analogy may be suggested to play a role in signal transduction. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1 [Unknown function, General]. Length = 163

>gnl|CDD|224693 COG1779, COG1779, C4-type Zn-finger protein [General function prediction only]

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 278 PEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKG 337
           P+E       C  C  + +  M++  IPYF EV++    C+ CGYR++++K         
Sbjct: 7   PKEEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTDVKTLEEREP-- 64

Query: 338 KRITLFVKNINDLSRDLIKVCNGAIQL 364
           +R TL V++  DLS  +++  +  I +
Sbjct: 65  RRYTLKVESEEDLSARVVRSKSATIYI 91

Length = 201

>gnl|CDD|232914 TIGR00310, ZPR1_znf, ZPR1 zinc finger domain

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 288 CGACAASCETRMF-MTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKN 346
           C +C   CET M  +  IPYF EV+  ++ C+ CGYR++++K  G      KR  L + +
Sbjct: 3   CPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEP--KRYILKIDD 60

Query: 347 INDLSRDLIKVCNGAIQLISIAV 369
             DL+R ++K  +  I++  + +
Sbjct: 61  EADLNRRVVKSESATIRIPELGL 83

An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction. Length = 192

>gnl|CDD|129440 TIGR00340, zpr1_rel, ZPR1-related zinc finger protein

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 288 CGACAASCETRM-FMTRIPYFQEVIVMASTCDACGYRNSELKP-GGRIPEKGKRITLFVK 345
           C  C +     + +   IPYF ++++    C+ CGYR++++     + P    R  + ++
Sbjct: 1   CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTDVYQLEEKEP---VRYIIKIE 57

Query: 346 NINDLSRDLIKVCNGAIQLISIAV 369
           N +DL   + +  +  I++  + +
Sbjct: 58  NEDDLFTLVYRSRSATIRIPELGI 81

This model describes a strictly archaeal family homologous to the domain duplicated in the eukaryotic zinc-binding protein ZPR1. ZPR1 was shown experimentally to bind approximately two moles of zinc; each copy of the domain contains a putative zinc finger of the form CXXCX(25)CXXC. ZPR1 binds the tyrosine kinase domain of epidermal growth factor receptor, but is displaced by receptor activation and autophosphorylation after which it redistributes in part to the nucleus. The proteins described by This model by analogy may be suggested to play a role in signal transduction. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1 [Unknown function, General]. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG2703	460	consensus C4-type Zn-finger protein [General funct	100.0
TIGR00310	192	ZPR1_znf ZPR1 zinc finger domain.	100.0
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	100.0
PF03367	161	zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004	100.0
KOG2703	460	consensus C4-type Zn-finger protein [General funct	100.0
TIGR00340	163	zpr1_rel ZPR1-related zinc finger protein. A model	100.0
COG1779	201	C4-type Zn-finger protein [General function predic	100.0
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	99.98
PF03367	161	zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004	99.97
TIGR00340	163	zpr1_rel ZPR1-related zinc finger protein. A model	99.96
TIGR00310	192	ZPR1_znf ZPR1 zinc finger domain.	99.96
COG1779	201	C4-type Zn-finger protein [General function predic	99.96
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	94.49
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	94.4
PF14353	128	CpXC: CpXC protein	92.96
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.56
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	92.43
PHA00626	59	hypothetical protein	92.41
PF14353	128	CpXC: CpXC protein	91.28
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	91.24
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	90.45
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.22
PHA00626	59	hypothetical protein	89.8
PRK12336	201	translation initiation factor IF-2 subunit beta; P	89.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.94
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	88.68
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	88.09
PF10058	54	DUF2296: Predicted integral membrane metal-binding	87.84
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.51
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.16
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	86.19
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	86.16
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	86.11
PRK05978	148	hypothetical protein; Provisional	86.01
PRK05978	148	hypothetical protein; Provisional	86.01
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	85.91
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	85.0
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	84.67
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	83.45
PRK12336	201	translation initiation factor IF-2 subunit beta; P	83.35
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	81.73
TIGR00244	147	transcriptional regulator NrdR. Members of this al	81.47
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	81.13
KOG2907	116	consensus RNA polymerase I transcription factor TF	80.92
TIGR00244	147	transcriptional regulator NrdR. Members of this al	80.29
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	80.27

>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1.1e-108  Score=809.88  Aligned_cols=334  Identities=50%  Similarity=0.828  Sum_probs=307.1

Q ss_pred             CCCCcccccccccchhccC--------CCCCCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546            1 MENNKEEIVDVGSVVEAVS--------ADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (369)
Q Consensus         1 ~~~~~~~~~~~g~~~~~~~--------~~~~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnE   72 (369)
                      |+.+..+|.++|.+|.+.+        ++..+++++|++|+||+||++|+|||++|+||||||||||||.|||||+||||
T Consensus         1 ~~~~~~~~~~~~~~a~~v~~~ik~~~~ed~~~~~~~EvES~Cm~Cg~nG~TRlllT~IP~fREvVimSF~CpHCG~kN~e   80 (460)
T KOG2703|consen    1 SENKEDLFIPPGEAAANVSPLIKREGAEDVEGNPVQEVESLCMNCGENGTTRLLLTSIPYFREVVIMSFECPHCGHKNNE   80 (460)
T ss_pred             CCccccCCCChhHhhcccchhhhhhhhhhhhcCchHHHHHhhhhcccCCceeEEEeecchhheeeeEEeecCccCCcccc
Confidence            3556779999998888774        34578899999999999999999999999999999999999999999999999


Q ss_pred             eeeCcccCCcceEEEEEeeCCCcccccceeeeecceEEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHHhhHhhhcC
Q 017546           73 VQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKL  152 (369)
Q Consensus        73 Vq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~~~~r~~~  152 (369)
                      ||+++.||++|+||+|+|.  +.+||||+||||++|+|+||||+||||+.+|+|.||||||+|.|++++|+++|+.||..
T Consensus        81 iQ~a~~iQ~~Gvri~l~V~--s~EDlnRqVvkSe~Asi~IpEldlEIP~~Sq~GslTTVEGiL~r~~d~LsqdQekRr~~  158 (460)
T KOG2703|consen   81 IQSAEEIQEGGVRIELRVQ--SVEDLNRQVVKSESASIEIPELDLEIPAKSQKGSLTTVEGILERVIDGLSQDQEKRRIT  158 (460)
T ss_pred             ccchhccccCceEEEEEec--cHHHhhhHhhhcccceeecccceeeccccccCCceeehHHHHHHHHHHHhhhhhhhccc
Confidence            9999999999999999999  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHHcCCCCCCCccCCCCCC
Q 017546          153 DPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNV  232 (369)
Q Consensus       153 ~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LGl~~~~~~~~~~~~~  232 (369)
                      +|+.+++|++|+.||+.++.+..|||||+|||+|||||+++.+|.+||+|++.+|.||.+||+.|||...++.+.+-   
T Consensus       159 ~pa~a~~Id~fi~kl~s~k~~~~pftlildDp~GNS~iEnp~~p~~dp~~~~~~y~Rt~eqne~lgl~~~~~~e~~~---  235 (460)
T KOG2703|consen  159 DPATAKQIDDFIVKLKSLKELTTPFTLILDDPTGNSFIENPHAPRVDPRLKIVHYLRTLEQNELLGLVDKNQEESEV---  235 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcCCceEEEecCCCCCccccCCCCCCCCCcceeEEEecCHhHHHhhccccccchhhhc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999776533211   


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccccccccCCchhhhhhhhccCCCcceeeeeccCccCcccccceeEEEecCCCCeEEE
Q 017546          233 VPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIV  312 (369)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~evii  312 (369)
                                .+..            +.....+.+++        +.||+.|+++||+|.++++|+|++++|||||+|||
T Consensus       236 ----------~k~~------------a~~~~~di~~~--------~~EV~~F~t~Cp~C~~pcet~Mk~~~IPhFkeVIi  285 (460)
T KOG2703|consen  236 ----------LKPI------------AASEATDIEDA--------PNEVLTFPTTCPSCTAPCETNMKLTDIPHFKEVII  285 (460)
T ss_pred             ----------cccc------------cccccchhhcc--------ccceEEccCCCCCCCCchhccceeccCCcceeEEE
Confidence                      1110            01111223333        44999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecceeEEecccCC
Q 017546          313 MASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLISIAV  369 (369)
Q Consensus       313 ms~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~ta~i~IPElg~  369 (369)
                      ||++|++||||+||||+||+|++||+||||+|.+.+||+||||||+||++.||||++
T Consensus       286 Mst~Cd~CGyksnEvKsGGai~~~G~ritl~~~~~~DlsRDvlKseTcs~~IPEl~l  342 (460)
T KOG2703|consen  286 MSTVCDRCGYKSNEVKSGGAIPDKGRRITLKVEDAEDLSRDVLKSETCSLSIPELDL  342 (460)
T ss_pred             EeecccccCCccccccCCCCcCCCCcEEEEEecchHhhhHHHhhccccceeccccce
Confidence            999999999999999999999999999999999999999999999999999999974

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain

Probab=100.00  E-value=9.8e-68  Score=485.89  Aligned_cols=185  Identities=37%  Similarity=0.604  Sum_probs=177.7

Q ss_pred             cCCCCCCCceEEEEEee-cCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecceEEE
Q 017546           33 LCMRCGENGVTRFLLTL-IPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIK  111 (369)
Q Consensus        33 ~Cp~Cg~~g~tr~llt~-IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati~  111 (369)
                      .||+||++|+|+|++|+ ||||||||||||.|+||||||||||++|+++|+  ||+|+|+  +++||+|+||||++|+|+
T Consensus         2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~--r~~l~V~--~~~DL~r~VvkS~tati~   77 (192)
T TIGR00310         2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPK--RYILKID--DEADLNRRVVKSESATIR   77 (192)
T ss_pred             cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCE--EEEEEEC--ChhcccceEEEcCCcEEE
Confidence            59999999999999999 999999999999999999999999999999997  9999999  999999999999999999


Q ss_pred             eecceeEeCCC-CCcceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCcce
Q 017546          112 IPELDFEIPPE-AQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFI  190 (369)
Q Consensus       112 IPELd~eI~p~-~~~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~I  190 (369)
                      ||||+|||||| +++|+||||||+|++++++|+.... +++.+++.++|+++|+++|+++++|+.|||||||||+|||||
T Consensus        78 IPEl~lei~pg~~~~G~iTTVEGlL~~~~~~L~~~~~-~d~~~~e~~~k~~~~i~kL~~~~~g~~pfTlIidDP~GNS~I  156 (192)
T TIGR00310        78 IPELGLDIEPGPTSGGFITNLEGVLRRVEEELETAIR-WQSEDEETKKRAEEILERLKEAIEGKEKFTVILEDPLGGSYI  156 (192)
T ss_pred             ccceEEEECCCccCCceEEeeHhHHHHHHHHHHhhhh-ccccCHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCeee
Confidence            99999999997 7999999999999999999998742 237889999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCC-eEEEEecCCHHHHHHcCCCCC
Q 017546          191 ENLYAPSPDPS-LNIKFYERTPEQQALLGYLVD  222 (369)
Q Consensus       191 ~~~~ap~~Dp~-~~~~~y~Rt~eqn~~LGl~~~  222 (369)
                      +|++||..||+ |++++|.||+|||++|||...
T Consensus       157 ~~~~a~~~d~~~~~~~~y~rt~eq~~~lGl~~~  189 (192)
T TIGR00310       157 QNVYAPKEILSEEEIEDLKTGKEINEDLGLSDE  189 (192)
T ss_pred             ecCCCCCCCCcccEeeecCCCHHHHHhcCCccc
Confidence            99999999999 999999999999999999643

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=100.00  E-value=1.9e-62  Score=439.64  Aligned_cols=159  Identities=55%  Similarity=0.904  Sum_probs=154.3

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecceEEE
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIK  111 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati~  111 (369)
                      |+||+||++|+|||++|+||||||||||||.|+||||||||||++|+++|+|+||+|+|+  +++||||+||||++|+|+
T Consensus         1 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~~~~p~G~r~~l~V~--~~~DL~r~VvkS~ta~i~   78 (160)
T smart00709        1 SDCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKVE--SPEDLNRDVVKSETATIS   78 (160)
T ss_pred             CcCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccceEEECcccCCCceEEEEEEC--ChhhccceEEEcCCcEEE
Confidence            689999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             eecceeEeCCCCCcceEEehHHHHHHHHHHHHHh-hHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCcce
Q 017546          112 IPELDFEIPPEAQRGSLSTVEGILVRAADELEAL-QEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFI  190 (369)
Q Consensus       112 IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~-~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~I  190 (369)
                      ||||+|||||++++|+||||||+|++++++|+.. ++.++..+++.++|+++|+++|+++++|+.|||||||||+|||||
T Consensus        79 IPEl~~ei~pg~~~g~itTVEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~~g~~~fTliidDP~GnS~I  158 (160)
T smart00709       79 IPELDLEIPPGPLGGFITTVEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELIEGKEPFTLILDDPAGNSYI  158 (160)
T ss_pred             eeeeeEEecCCCCCcEEEehHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCceec
Confidence            9999999999999999999999999999999988 666766789999999999999999999999999999999999999


Q ss_pred             ec
Q 017546          191 EN  192 (369)
Q Consensus       191 ~~  192 (369)
                      +|
T Consensus       159 ~~  160 (160)
T smart00709      159 QN  160 (160)
T ss_pred             cC
Confidence            85

Also present in archaeal proteins.

>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.7e-62  Score=440.41  Aligned_cols=160  Identities=54%  Similarity=0.916  Sum_probs=140.0

Q ss_pred             eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecceEE
Q 017546           31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATI  110 (369)
Q Consensus        31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati  110 (369)
                      +|+||+||++|.|||++|+||||||||||||.|+||||||||||++|+++|+|+||+|+|+  +++||||+||||++|+|
T Consensus         1 ~s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~~~~~~G~r~tl~V~--~~~DL~r~VvkS~~ati   78 (161)
T PF03367_consen    1 ESLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNNEVKSGGQIQPKGVRITLKVE--SPEDLNRQVVKSDTATI   78 (161)
T ss_dssp             -EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEEEEEEECSS-SSEEEEEEEE---SHHHHC-EEEE-TT-EE
T ss_pred             CCcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEeeeEEECccCCCCceEEEEEEC--CHHHhcceEEecCcEEE
Confidence            5899999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             EeecceeEe-CCCCCcceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCcc
Q 017546          111 KIPELDFEI-PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSF  189 (369)
Q Consensus       111 ~IPELd~eI-~p~~~~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~  189 (369)
                      +||||+||| |+++++|+||||||+|++++++|+..++.|++.+++.++++++|+++|+++++|+.|||||||||+||||
T Consensus        79 ~IPEl~~ei~P~~~~~g~iTTVEGlL~~i~~~L~~~~~~~~~~~~e~~~~~~~~i~~L~~~~~g~~pfTlIidDP~GnS~  158 (161)
T PF03367_consen   79 EIPELGLEIEPGPSQGGFITTVEGLLMRIIDNLERLQPERDSDDPEEKEKIEEFIEKLDELIEGKRPFTLIIDDPSGNSF  158 (161)
T ss_dssp             EEGGGTEEE--TTTT-SEEEEHHHHHHHHHHHHHTTHHCCCHH-HHHHHHHHHHHHHHHHHHCTSS-EEEEEEETTS--E
T ss_pred             EEeecceEEccCCCCCceEEehHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcce
Confidence            999999999 5679999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             eec
Q 017546          190 IEN  192 (369)
Q Consensus       190 I~~  192 (369)
                      |+|
T Consensus       159 I~n  161 (161)
T PF03367_consen  159 IQN  161 (161)
T ss_dssp             E--
T ss_pred             ecC
Confidence            986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.

>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=2.5e-61  Score=475.05  Aligned_cols=200  Identities=36%  Similarity=0.597  Sum_probs=191.8

Q ss_pred             CCCCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccc
Q 017546           21 DDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHR  100 (369)
Q Consensus        21 ~~~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR  100 (369)
                      ++..++|..|.+.||+|..+..|+|.+|+||||+||||||..|++||||+||||+||+|.++|+||||+|.  +.+||.|
T Consensus       248 ~~~~~EV~~F~t~Cp~C~~pcet~Mk~~~IPhFkeVIiMst~Cd~CGyksnEvKsGGai~~~G~ritl~~~--~~~DlsR  325 (460)
T KOG2703|consen  248 EDAPNEVLTFPTTCPSCTAPCETNMKLTDIPHFKEVIIMSTVCDRCGYKSNEVKSGGAIPDKGRRITLKVE--DAEDLSR  325 (460)
T ss_pred             hccccceEEccCCCCCCCCchhccceeccCCcceeEEEEeecccccCCccccccCCCCcCCCCcEEEEEec--chHhhhH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             eeeeecceEEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHH-hhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEE
Q 017546          101 QVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEA-LQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF  179 (369)
Q Consensus       101 ~VvKS~~ati~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~-~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTl  179 (369)
                      +|+||+||+++||||+||+.+++++|.||||||||.++.+.|.. ...+.+++++...++|.+|+++|.+++.|+.||||
T Consensus       326 DvlKseTcs~~IPEl~lel~~~~LgGrfTTiEGLl~~~~e~l~~~~f~~~DS~~~~~~~~~~~F~~~l~~~i~~~~~~tl  405 (460)
T KOG2703|consen  326 DVLKSETCSLSIPELDLELGGGTLGGRFTTIEGLLTQIREQLDGRSFTFGDSMDEGQKARWQEFLAKLDDIIAGKLPATL  405 (460)
T ss_pred             HHhhccccceeccccceeccCccccceeeeHHHHHHHHHHHHhcCceeccccCCHHHHHHHHHHHHHHHHHHhcccceEE
Confidence            99999999999999999999999999999999999999999976 23345899999999999999999999999999999


Q ss_pred             EEeCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHHcCCCCC
Q 017546          180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVD  222 (369)
Q Consensus       180 iidDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LGl~~~  222 (369)
                      |||||+|||||+|.+||++||+|++++|+||+|||++|||..-
T Consensus       406 IldDp~~~syvq~~~ap~~dp~lt~E~Y~Rt~eqNeeLGlnDm  448 (460)
T KOG2703|consen  406 ILDDPLGNSYVQNVYAPDDDPNLTVEEYERTYEQNEELGLNDM  448 (460)
T ss_pred             EeecCCcCcccccccCCCCCCcccHHHhhhhhhhhhhcCcccc
Confidence            9999999999999999999999999999999999999999754

>TIGR00340 zpr1_rel ZPR1-related zinc finger protein

Probab=100.00  E-value=2.4e-58  Score=413.97  Aligned_cols=157  Identities=34%  Similarity=0.601  Sum_probs=148.5

Q ss_pred             CCCCCCCceEE-EEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecceEEEe
Q 017546           34 CMRCGENGVTR-FLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKI  112 (369)
Q Consensus        34 Cp~Cg~~g~tr-~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati~I  112 (369)
                      ||+||+++.+. |++|+||||||||||||.|+||||||||||++|+++|  +||+|+|+  +++||+||||||++|+|+|
T Consensus         1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~~~~~p--~r~~l~V~--~~~DL~r~VvkS~ta~i~I   76 (163)
T TIGR00340         1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTDVYQLEEKEP--VRYIIKIE--NEDDLFTLVYRSRSATIRI   76 (163)
T ss_pred             CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchhheeEcCCcCC--EEEEEEEC--ChhhccceEEEcCCcEEEc
Confidence            99999987655 8999999999999999999999999999999999999  89999999  9999999999999999999


Q ss_pred             ecceeEeCCCC-CcceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCccee
Q 017546          113 PELDFEIPPEA-QRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIE  191 (369)
Q Consensus       113 PELd~eI~p~~-~~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~I~  191 (369)
                      |||+|||||++ ++|+||||||+|++++++|+...  |+..+++.++|+++|+++|+++++|+.|||||||||+|||||+
T Consensus        77 PEl~lei~pg~~~~G~iTTVEGlL~~i~~~L~~~~--~~~~~~e~~~k~~~~l~kL~~~~~g~~pfTlIldDP~GNS~I~  154 (163)
T TIGR00340        77 PELGIKIEPGPASQGYISNIEGVLERIEEVLDTAS--DDDEDDEAVKKCEEILKRIREVIEGKFKFTLIIEDPFGNSFIE  154 (163)
T ss_pred             cceeEEecCCCcCCceEEehHhHHHHHHHHHHHhh--hcccCHHHHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCeeec
Confidence            99999999977 79999999999999999999763  4466889999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 017546          192 NLYAP  196 (369)
Q Consensus       192 ~~~ap  196 (369)
                      ++.+.
T Consensus       155 ~~~~~  159 (163)
T TIGR00340       155 SEKAI  159 (163)
T ss_pred             CCCcc
Confidence            98773

A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1.7e-48  Score=355.99  Aligned_cols=191  Identities=31%  Similarity=0.457  Sum_probs=178.7

Q ss_pred             CCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCccccccee
Q 017546           23 SDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQV  102 (369)
Q Consensus        23 ~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~V  102 (369)
                      ....+.+....||+||....+.+++++||||++|+||+..|++||||++||+.++++.|  +||+|+|+  +++||+++|
T Consensus         6 ~~~~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~DV~~~e~~eP--~r~~lkve--~~edL~~~V   81 (201)
T COG1779           6 FPKEEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTDVKTLEEREP--RRYTLKVE--SEEDLSARV   81 (201)
T ss_pred             ccceeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccceeecccCCC--eEEEEEeC--CHHHhhhhe
Confidence            34567788899999999889999999999999999999999999999999999999999  89999999  999999999


Q ss_pred             eeecceEEEeecceeEeCCCCC-cceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 017546          103 VKSESATIKIPELDFEIPPEAQ-RGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFIL  181 (369)
Q Consensus       103 vKS~~ati~IPELd~eI~p~~~-~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTlii  181 (369)
                      +||.+|+|+||||+++|.||+. .|+||||||+|.|+.+.|+....+  ..++|..+|+++++.+++++++|+.+|||||
T Consensus        82 ~RS~s~~I~IPELg~~iePG~~s~G~ITtIEGvL~rv~e~l~~a~~~--~~~dE~~~k~~e~~~~i~~~ieg~~~fTlIi  159 (201)
T COG1779          82 VRSKSATIYIPELGLEIEPGPASEGFITTIEGVLERVYEVLETAIKL--AEDDESKKKAEELLKRIDEAIEGKRKFTLII  159 (201)
T ss_pred             eecCCccEEcccCceEeccccccCceEehHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHhccCccEEEEE
Confidence            9999999999999999999654 599999999999999999987766  3445889999999999999999999999999


Q ss_pred             eCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHHcCCC
Q 017546          182 DDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYL  220 (369)
Q Consensus       182 dDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LGl~  220 (369)
                      +||+|||||.+.+|+..++..+..+|.||. ++..+|+.
T Consensus       160 eDp~G~S~I~~~~a~~e~l~~ee~~~lktg-~~~~~~~~  197 (201)
T COG1779         160 EDPLGNSAIISEKAPDEKLSKEEAEKLKTG-MNVIDGDG  197 (201)
T ss_pred             ECCCCCceeeccccccCCccHHHHHHhcCC-ceEecccC
Confidence            999999999999999999999999999999 99988864

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=99.98  E-value=7.8e-33  Score=248.37  Aligned_cols=84  Identities=46%  Similarity=0.873  Sum_probs=82.2

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecceeEEec
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLI  365 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~ta~i~IP  365 (369)
                      +.||+||+++.++|++++|||||+||||||.|++||||+|||+++|+++|+|+||||+|++++||+|+|+||+||+|.||
T Consensus         1 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~~~~p~G~r~~l~V~~~~DL~r~VvkS~ta~i~IP   80 (160)
T smart00709        1 SDCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKVESPEDLNRDVVKSETATISIP   80 (160)
T ss_pred             CcCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccceEEECcccCCCceEEEEEECChhhccceEEEcCCcEEEee
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 017546          366 SIAV  369 (369)
Q Consensus       366 Elg~  369 (369)
                      |||+
T Consensus        81 El~~   84 (160)
T smart00709       81 ELDL   84 (160)
T ss_pred             eeeE
Confidence            9985

Also present in archaeal proteins.

>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.97  E-value=1.3e-32  Score=247.23  Aligned_cols=84  Identities=43%  Similarity=0.841  Sum_probs=73.5

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecceeEEec
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLI  365 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~ta~i~IP  365 (369)
                      +.||+||+++.++|++|+|||||+||||||.|++||||+|||+++|+++|+|+||||+|++++||+|+|+||+||+|+||
T Consensus         2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~~~~~~G~r~tl~V~~~~DL~r~VvkS~~ati~IP   81 (161)
T PF03367_consen    2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNNEVKSGGQIQPKGVRITLKVESPEDLNRQVVKSDTATIEIP   81 (161)
T ss_dssp             EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEEEEEEECSS-SSEEEEEEEE-SHHHHC-EEEE-TT-EEEEG
T ss_pred             CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEeeeEEECccCCCCceEEEEEECCHHHhcceEEecCcEEEEEe
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 017546          366 SIAV  369 (369)
Q Consensus       366 Elg~  369 (369)
                      |||+
T Consensus        82 El~~   85 (161)
T PF03367_consen   82 ELGL   85 (161)
T ss_dssp             GGTE
T ss_pred             ecce
Confidence            9985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.

>TIGR00340 zpr1_rel ZPR1-related zinc finger protein

Probab=99.96  E-value=1.8e-30  Score=233.74  Aligned_cols=80  Identities=20%  Similarity=0.482  Sum_probs=76.8

Q ss_pred             CccCcccccce-eEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecceeEEecc
Q 017546          288 CGACAASCETR-MFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLIS  366 (369)
Q Consensus       288 Cp~C~~~~~~~-m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~ta~i~IPE  366 (369)
                      ||+||+++.+. |++++|||||+||||||.|++||||+|||+++|+++|  +||||+|++++||+|+|+||+||+|.|||
T Consensus         1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~~~~~p--~r~~l~V~~~~DL~r~VvkS~ta~i~IPE   78 (163)
T TIGR00340         1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTDVYQLEEKEP--VRYIIKIENEDDLFTLVYRSRSATIRIPE   78 (163)
T ss_pred             CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchhheeEcCCcCC--EEEEEEECChhhccceEEEcCCcEEEccc
Confidence            99999985555 8999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             cCC
Q 017546          367 IAV  369 (369)
Q Consensus       367 lg~  369 (369)
                      ||+
T Consensus        79 l~l   81 (163)
T TIGR00340        79 LGI   81 (163)
T ss_pred             eeE
Confidence            985

A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain

Probab=99.96  E-value=4.7e-30  Score=236.44  Aligned_cols=81  Identities=33%  Similarity=0.691  Sum_probs=79.3

Q ss_pred             cCccCcccccceeEEEe-cCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecceeEEec
Q 017546          287 TCGACAASCETRMFMTR-IPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCNGAIQLI  365 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~-IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~ta~i~IP  365 (369)
                      .||+||+++.++|++++ |||||+||||||.|++||||+|||+++|+++|  +||+|+|++++||+|+|+||+||+|.||
T Consensus         2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p--~r~~l~V~~~~DL~r~VvkS~tati~IP   79 (192)
T TIGR00310         2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEP--KRYILKIDDEADLNRRVVKSESATIRIP   79 (192)
T ss_pred             cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCC--EEEEEEECChhcccceEEEcCCcEEEcc
Confidence            69999999999999999 99999999999999999999999999999999  5999999999999999999999999999


Q ss_pred             ccCC
Q 017546          366 SIAV  369 (369)
Q Consensus       366 Elg~  369 (369)
                      |||+
T Consensus        80 El~l   83 (192)
T TIGR00310        80 ELGL   83 (192)
T ss_pred             ceEE
Confidence            9985

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=99.96  E-value=2.5e-29  Score=230.23  Aligned_cols=88  Identities=27%  Similarity=0.586  Sum_probs=86.4

Q ss_pred             ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcCcccceeeeecc
Q 017546          280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKVCN  359 (369)
Q Consensus       280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~DL~r~VlkS~t  359 (369)
                      ++.++...||+||+.+.++|++|+|||||+|+||++.|++||||++||+++|+++|  +||+|+|++++||+++|+||.|
T Consensus         9 ~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~DV~~~e~~eP--~r~~lkve~~edL~~~V~RS~s   86 (201)
T COG1779           9 EEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTDVKTLEEREP--RRYTLKVESEEDLSARVVRSKS   86 (201)
T ss_pred             eeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccceeecccCCC--eEEEEEeCCHHHhhhheeecCC
Confidence            78899999999999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             eeEEecccCC
Q 017546          360 GAIQLISIAV  369 (369)
Q Consensus       360 a~i~IPElg~  369 (369)
                      |+|+|||||+
T Consensus        87 ~~I~IPELg~   96 (201)
T COG1779          87 ATIYIPELGL   96 (201)
T ss_pred             ccEEcccCce
Confidence            9999999996

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=94.49  E-value=0.016  Score=37.52  Aligned_cols=24  Identities=46%  Similarity=0.841  Sum_probs=19.5

Q ss_pred             cCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCcc
Q 017546           33 LCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN   71 (369)
Q Consensus        33 ~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnn   71 (369)
                      .||.|+               ++|-+.+-.|+||||...
T Consensus         2 ~CP~C~---------------~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECG---------------AEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCc---------------CCchhhcCcCCCCCCCCc
Confidence            499995               566788899999999763

Several members are annotated as putative helicases.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=94.40  E-value=0.018  Score=37.29  Aligned_cols=24  Identities=42%  Similarity=0.798  Sum_probs=19.3

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS  325 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~  325 (369)
                      .||.|++.               |-+.+..|++|||.+.
T Consensus         2 ~CP~C~~~---------------V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAE---------------VPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCC---------------chhhcCcCCCCCCCCc
Confidence            59999855               4567889999999764

Several members are annotated as putative helicases.

>PF14353 CpXC: CpXC protein

Probab=92.96  E-value=0.026  Score=48.55  Aligned_cols=40  Identities=25%  Similarity=0.566  Sum_probs=28.8

Q ss_pred             ccCCCCCCCceEEE----EEeecCCcceEEE----EEeeCCCCCCCcc
Q 017546           32 SLCMRCGENGVTRF----LLTLIPHFRKVLL----SAFECPHCGERNN   71 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~----llt~IP~FkeiiI----mSf~C~~CGyrnn   71 (369)
                      -.||+||+.....+    -...-|=+++=|+    .+|.||+||.+..
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~   49 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR   49 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence            46999999876543    3334566666665    5799999999874

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.56  E-value=0.12  Score=48.85  Aligned_cols=43  Identities=23%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             eccCccCcccccceeEE--------Ee---cCCCCe---EEEEEeeCCCCCCCcccc
Q 017546          285 PSTCGACAASCETRMFM--------TR---IPYFQE---VIVMASTCDACGYRNSEL  327 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~--------~~---IP~F~e---viims~~C~~CGyk~~eV  327 (369)
                      ...||+|++...++...        ++   =|+|+.   .+-..++|++|||-..+-
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            46899999987665421        11   255554   467789999999987754

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=92.43  E-value=0.12  Score=46.78  Aligned_cols=47  Identities=17%  Similarity=0.221  Sum_probs=32.8

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCcc
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRI  333 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~  333 (369)
                      +.||.||.+...-....-++- |.+|-+.-.|.+||++++-....+..
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~-~~~~~~~~~c~~c~~~f~~~e~~~~~   47 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAED-GNAIRRRRECLACGKRFTTFERVELV   47 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCC-CCceeeeeeccccCCcceEeEeccCc
Confidence            479999988522222222233 77888889999999999877665554

>PHA00626 hypothetical protein

Probab=92.41  E-value=0.18  Score=38.51  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEee
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVP   91 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~   91 (369)
                      ..||+||..-.+|--..+-|-      -.+.|+.|||+.+.-    +..++|.---++|+
T Consensus         1 m~CP~CGS~~Ivrcg~cr~~s------nrYkCkdCGY~ft~~----~~~~~~~~~~~~~~   50 (59)
T PHA00626          1 MSCPKCGSGNIAKEKTMRGWS------DDYVCCDCGYNDSKD----AFGERGKNEFVRIN   50 (59)
T ss_pred             CCCCCCCCceeeeeceecccC------cceEcCCCCCeechh----hhhhccccceEEec
Confidence            369999986555533322221      238999999999754    44445544445554

>PF14353 CpXC: CpXC protein

Probab=91.28  E-value=0.041  Score=47.36  Aligned_cols=41  Identities=27%  Similarity=0.528  Sum_probs=28.9

Q ss_pred             ccCccCcccccceeE-EEe---cCCCCeEE----EEEeeCCCCCCCccc
Q 017546          286 STCGACAASCETRMF-MTR---IPYFQEVI----VMASTCDACGYRNSE  326 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~-~~~---IP~F~evi----ims~~C~~CGyk~~e  326 (369)
                      .+||+||+....... .++   -|-+++-|    +..++|++||++..=
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~   50 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL   50 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence            479999999877663 333   35444444    468999999998863

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=91.24  E-value=0.31  Score=45.72  Aligned_cols=84  Identities=14%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             eEEeccCCCCCCCceE-EEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeec
Q 017546           28 YQVESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSE  106 (369)
Q Consensus        28 ~eies~Cp~Cg~~g~t-r~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~  106 (369)
                      .++...||+||..-++ .++..+.+.      ....|..||+=+.+    .-.-|+-++..+-|.         +.=+|.
T Consensus         3 ~~iy~~Cp~Cg~eev~hEVik~~g~~------~lvrC~eCG~V~~~----~i~~~k~~~v~viVS---------~~~~S~   63 (201)
T COG1326           3 EEIYIECPSCGSEEVSHEVIKERGRE------PLVRCEECGTVHPA----IIKTPKPVRVRVIVS---------RHEESF   63 (201)
T ss_pred             ceEEEECCCCCcchhhHHHHHhcCCc------eEEEccCCCcEeec----eeeccccceEEEEEe---------cCCccc
Confidence            4677889999933332 344444544      44799999996643    444456666777775         333577


Q ss_pred             ceEEEeecce-------eEeCCCCCcceEEehH
Q 017546          107 SATIKIPELD-------FEIPPEAQRGSLSTVE  132 (369)
Q Consensus       107 ~ati~IPELd-------~eI~p~~~~G~iTTVE  132 (369)
                      +-.+++|+.+       |++..  -+..||++|
T Consensus        64 ~~~vel~~gE~l~vGDei~vd~--e~veITSIE   94 (201)
T COG1326          64 TKEVELDPGETLKVGDEIEVDG--EEVEITSIE   94 (201)
T ss_pred             ceeEecCCCCeEecCCEEEEcC--CEEEEEEEe
Confidence            7788888654       44443  467888887

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=90.45  E-value=0.38  Score=33.94  Aligned_cols=39  Identities=23%  Similarity=0.468  Sum_probs=26.2

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      .||.||+.- .......+=--.|=...-+.|-+|||+..|
T Consensus         2 ~Cp~C~~~~-a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        2 PCPKCGNRE-ATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             cCCCCCCCe-EEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            699998663 233344444445666677899999998754

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.22  E-value=0.13  Score=32.94  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=17.2

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR  323 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk  323 (369)
                      ...||+||+....               -+..|.+||.+
T Consensus         2 ~~~Cp~Cg~~~~~---------------~~~fC~~CG~~   25 (26)
T PF13248_consen    2 EMFCPNCGAEIDP---------------DAKFCPNCGAK   25 (26)
T ss_pred             cCCCcccCCcCCc---------------ccccChhhCCC
Confidence            4679999986422               26679999976

>PHA00626 hypothetical protein

Probab=89.80  E-value=0.37  Score=36.86  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecC
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKN  346 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~  346 (369)
                      +.||.||+.-.++-..+.-|-      --+.|..|||+++----|    +.|+---++|..
T Consensus         1 m~CP~CGS~~Ivrcg~cr~~s------nrYkCkdCGY~ft~~~~~----~~~~~~~~~~~~   51 (59)
T PHA00626          1 MSCPKCGSGNIAKEKTMRGWS------DDYVCCDCGYNDSKDAFG----ERGKNEFVRINK   51 (59)
T ss_pred             CCCCCCCCceeeeeceecccC------cceEcCCCCCeechhhhh----hccccceEEech
Confidence            479999986444433332221      346899999999865433    344444445543

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=89.39  E-value=1.4  Score=41.46  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccc-----c-cCCccCCCceEEEEEecCcCcccceeeeecc
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL-----K-PGGRIPEKGKRITLFVKNINDLSRDLIKVCN  359 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eV-----k-~~g~~~~~g~ritl~V~~~~DL~r~VlkS~t  359 (369)
                      ..||.|+.+ .|.+..-     +.  ++...|..||++..=-     . +.++--.+|..++++|++...-.+-|.|-+.
T Consensus        99 V~C~~C~~p-dT~l~k~-----~~--~~~l~C~aCGa~~~v~~~~~~~~~~~~~~~~~e~~~v~Ie~l~~~G~GVak~~g  170 (201)
T PRK12336         99 VICSECGLP-DTRLVKE-----DR--VLMLRCDACGAHRPVKKRKASSETQREAIEEGKTYEVEITGTGRKGDGVAKKGK  170 (201)
T ss_pred             EECCCCCCC-CcEEEEc-----CC--eEEEEcccCCCCccccccccccCCCCCCCccCCEEEEEEEEccCCCceEEEECC
Confidence            569999998 5666432     23  4458999999976421     1 1121122566788999888776666777666


Q ss_pred             eeEEec
Q 017546          360 GAIQLI  365 (369)
Q Consensus       360 a~i~IP  365 (369)
                      -.+.+|
T Consensus       171 ~~vfV~  176 (201)
T PRK12336        171 YTIFVP  176 (201)
T ss_pred             EEEEeC
Confidence            666665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.94  E-value=0.49  Score=44.66  Aligned_cols=45  Identities=29%  Similarity=0.668  Sum_probs=29.6

Q ss_pred             eccCCCCCCCceEEEEEe-ec----------CCcce---EEEEEeeCCCCCCCccceee
Q 017546           31 ESLCMRCGENGVTRFLLT-LI----------PHFRK---VLLSAFECPHCGERNNEVQF   75 (369)
Q Consensus        31 es~Cp~Cg~~g~tr~llt-~I----------P~Fke---iiImSf~C~~CGyrnnEVq~   75 (369)
                      +..||+|++.-.+..+.+ .+          |+|+.   .+.....||||||-..+-.+
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F   63 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDF   63 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccccc
Confidence            456999998865443222 22          45544   46777899999998765543

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=88.68  E-value=0.25  Score=43.56  Aligned_cols=50  Identities=22%  Similarity=0.472  Sum_probs=35.2

Q ss_pred             EeccCCCCCCCceEE--------EEEeecCCcceEEEEEeeCCCCCCCccceeeCccc
Q 017546           30 VESLCMRCGENGVTR--------FLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEI   79 (369)
Q Consensus        30 ies~Cp~Cg~~g~tr--------~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i   79 (369)
                      ....|++||..-...        .+-+.|-|-.|++-..+.||+||-++-+|..|.++
T Consensus        69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~el  126 (135)
T PRK03824         69 AVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIVKGRGV  126 (135)
T ss_pred             eEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEecCceE
Confidence            457899999654322        23345556677777778999999888888777654

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=88.09  E-value=0.29  Score=35.48  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCC--CCCCcc
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDA--CGYRNS  325 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~--CGyk~~  325 (369)
                      .||.||+.+.++--...-|.+++   ....|.+  ||+.+.
T Consensus         1 ~CP~Cg~~a~ir~S~~~s~~~~~---~Y~qC~N~~Cg~tfv   38 (47)
T PF04606_consen    1 RCPHCGSKARIRTSRQLSPLTRE---LYCQCTNPECGHTFV   38 (47)
T ss_pred             CcCCCCCeeEEEEchhhCcceEE---EEEEECCCcCCCEEE
Confidence            49999999877765555666666   7788988  998764

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function []

Probab=87.84  E-value=0.56  Score=35.35  Aligned_cols=35  Identities=29%  Similarity=0.785  Sum_probs=24.4

Q ss_pred             eEEeccCCCCC-CCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546           28 YQVESLCMRCG-ENGVTRFLLTLIPHFRKVLLSAFECPHCGERN   70 (369)
Q Consensus        28 ~eies~Cp~Cg-~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn   70 (369)
                      .-..-.|.+|+ .||...     .--|.++   +|.|++||+.|
T Consensus        19 ~r~aLIC~~C~~hNGla~-----~~~~~~i---~y~C~~Cg~~N   54 (54)
T PF10058_consen   19 NRYALICSKCFSHNGLAP-----KEEFEEI---QYRCPYCGALN   54 (54)
T ss_pred             CceeEECcccchhhcccc-----cccCCce---EEEcCCCCCcC
Confidence            34566799997 467553     2224444   89999999976

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.51  E-value=0.8  Score=41.50  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=31.2

Q ss_pred             ccCCCCCCCce-EEEEEeecCCcceEEEEEeeCCCCCCCccceeeCccc
Q 017546           32 SLCMRCGENGV-TRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEI   79 (369)
Q Consensus        32 s~Cp~Cg~~g~-tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i   79 (369)
                      ..||.||.+-+ .+---+.=|  +..|-+.-.|+.||++.+-+...+..
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~--~~~~~~~~~c~~c~~~f~~~e~~~~~   47 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAED--GNAIRRRRECLACGKRFTTFERVELV   47 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCC--CCceeeeeeccccCCcceEeEeccCc
Confidence            36999997652 222111112  55888889999999999877666554

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.16  E-value=0.45  Score=34.11  Aligned_cols=29  Identities=34%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546           31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN   70 (369)
Q Consensus        31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn   70 (369)
                      +-.|++||..-..      .+. ..    .+.||+||.+.
T Consensus         3 ~y~C~~CG~~~~~------~~~-~~----~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVEL------DEY-GT----GVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEE------CCC-CC----ceECCCCCCeE
Confidence            3469999975221      111 11    79999999754

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=86.19  E-value=0.65  Score=38.45  Aligned_cols=36  Identities=31%  Similarity=0.728  Sum_probs=26.7

Q ss_pred             eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546           31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP   81 (369)
Q Consensus        31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~   81 (369)
                      .-.||.|+.+.+ +=.-+-|          +.|.+|||+.    .+|+..|
T Consensus        35 ~~~Cp~C~~~~V-kR~a~GI----------W~C~kCg~~f----AGgay~P   70 (89)
T COG1997          35 KHVCPFCGRTTV-KRIATGI----------WKCRKCGAKF----AGGAYTP   70 (89)
T ss_pred             CCcCCCCCCcce-eeeccCe----------EEcCCCCCee----ccccccc
Confidence            356999999844 3345566          9999999987    4777666

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=86.16  E-value=0.53  Score=35.58  Aligned_cols=33  Identities=30%  Similarity=0.622  Sum_probs=22.5

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      ...||.||+....     .=+.-++++    .|+.||...-=
T Consensus         2 ~~~CP~CG~~iev-----~~~~~GeiV----~Cp~CGaeleV   34 (54)
T TIGR01206         2 QFECPDCGAEIEL-----ENPELGELV----ICDECGAELEV   34 (54)
T ss_pred             ccCCCCCCCEEec-----CCCccCCEE----eCCCCCCEEEE
Confidence            3589999986532     223446755    89999987643

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.11  E-value=0.5  Score=33.10  Aligned_cols=37  Identities=22%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN  324 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~  324 (369)
                      .||.||+.- ..+.+..+=--.|-...-+.|-+||++.
T Consensus         2 ~Cp~Cg~~~-a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    2 KCPKCGHNE-AVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             --SSS-SSE-EEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCcCCCCCe-EEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            699999873 3333444433455566677899999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PRK05978 hypothetical protein; Provisional

Probab=86.01  E-value=0.33  Score=43.78  Aligned_cols=37  Identities=24%  Similarity=0.591  Sum_probs=28.4

Q ss_pred             eeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccccc
Q 017546          283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKP  329 (369)
Q Consensus       283 ~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~  329 (369)
                      -+...||.||+-          .-|+.-+-|.-.|++||.+..-...
T Consensus        31 Gl~grCP~CG~G----------~LF~g~Lkv~~~C~~CG~~~~~~~a   67 (148)
T PRK05978         31 GFRGRCPACGEG----------KLFRAFLKPVDHCAACGEDFTHHRA   67 (148)
T ss_pred             HHcCcCCCCCCC----------cccccccccCCCccccCCccccCCc
Confidence            457789999876          3456777799999999998765543

>PRK05978 hypothetical protein; Provisional

Probab=86.01  E-value=0.35  Score=43.58  Aligned_cols=33  Identities=33%  Similarity=0.669  Sum_probs=26.0

Q ss_pred             EeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546           30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (369)
Q Consensus        30 ies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnE   72 (369)
                      +...||+||+-.          .|+--+-|.-.|++||.+..-
T Consensus        32 l~grCP~CG~G~----------LF~g~Lkv~~~C~~CG~~~~~   64 (148)
T PRK05978         32 FRGRCPACGEGK----------LFRAFLKPVDHCAACGEDFTH   64 (148)
T ss_pred             HcCcCCCCCCCc----------ccccccccCCCccccCCcccc
Confidence            568899999763          356667788999999998753

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=85.91  E-value=0.32  Score=30.48  Aligned_cols=22  Identities=32%  Similarity=0.720  Sum_probs=14.5

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR  323 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk  323 (369)
                      .||.||++..-..               -.|.+||++
T Consensus         1 ~Cp~CG~~~~~~~---------------~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDDA---------------KFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCcC---------------cchhhhCCc
Confidence            3888888764332               238888875

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=85.00  E-value=0.72  Score=33.06  Aligned_cols=29  Identities=28%  Similarity=0.663  Sum_probs=19.4

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS  325 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~  325 (369)
                      ..||+||+....       +-...    .+.|++||.+..
T Consensus         4 y~C~~CG~~~~~-------~~~~~----~~~Cp~CG~~~~   32 (46)
T PRK00398          4 YKCARCGREVEL-------DEYGT----GVRCPYCGYRIL   32 (46)
T ss_pred             EECCCCCCEEEE-------CCCCC----ceECCCCCCeEE
Confidence            469999987432       22111    789999997654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=5.8  Score=40.83  Aligned_cols=38  Identities=18%  Similarity=0.440  Sum_probs=26.1

Q ss_pred             eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccce
Q 017546           31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEV   73 (369)
Q Consensus        31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEV   73 (369)
                      ...|+.|+..|.++...-.     =++.|.-.|+.|+=+-..|
T Consensus       159 ~~tC~tC~G~G~v~~~~~~-----g~~~~~~~C~~C~G~G~~i  196 (371)
T COG0484         159 PKTCPTCNGSGQVRTVQRT-----GFFSFQQTCPTCNGTGKII  196 (371)
T ss_pred             CCcCCCCCCcCeEEEEEee-----eEEEEEEECCCCccceeEC
Confidence            3569999888877665433     4566777888887655555

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=83.45  E-value=2.1  Score=30.12  Aligned_cols=39  Identities=26%  Similarity=0.531  Sum_probs=24.5

Q ss_pred             cCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546           33 LCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (369)
Q Consensus        33 ~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnE   72 (369)
                      .||.||.+...-+ ...+=--.|=...-|.|..||++-.|
T Consensus         2 ~Cp~C~~~~a~~~-q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        2 PCPKCGNREATFF-QLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             cCCCCCCCeEEEE-EEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            5999986654322 22222234555666999999997643

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=83.35  E-value=4.3  Score=38.08  Aligned_cols=71  Identities=24%  Similarity=0.416  Sum_probs=43.8

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceee-------CcccCCcceEEEEEeeCCCcccccceeee
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQF-------AGEIQPRGCNYSLKVPSSDQKMFHRQVVK  104 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~-------~g~i~~kG~r~tL~V~~~~~~DLnR~VvK  104 (369)
                      .+|+.|+.+ .|.|...     +  =++...|..||.+.. |+.       ..+--.+|..++++|+  +...-.+-|.+
T Consensus        99 V~C~~C~~p-dT~l~k~-----~--~~~~l~C~aCGa~~~-v~~~~~~~~~~~~~~~~~e~~~v~Ie--~l~~~G~GVak  167 (201)
T PRK12336         99 VICSECGLP-DTRLVKE-----D--RVLMLRCDACGAHRP-VKKRKASSETQREAIEEGKTYEVEIT--GTGRKGDGVAK  167 (201)
T ss_pred             EECCCCCCC-CcEEEEc-----C--CeEEEEcccCCCCcc-ccccccccCCCCCCCccCCEEEEEEE--EccCCCceEEE
Confidence            689999986 4555432     1  244589999999753 222       1111134556788887  55555555776


Q ss_pred             ecceEEEee
Q 017546          105 SESATIKIP  113 (369)
Q Consensus       105 S~~ati~IP  113 (369)
                      -+..++.+|
T Consensus       168 ~~g~~vfV~  176 (201)
T PRK12336        168 KGKYTIFVP  176 (201)
T ss_pred             ECCEEEEeC
Confidence            666666665

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=81.73  E-value=0.96  Score=39.86  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             eeccCccCcccccce--------eEEEecCCCCeEEEEEeeCCCCCCCccccccCCcc
Q 017546          284 FPSTCGACAASCETR--------MFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRI  333 (369)
Q Consensus       284 ~~~~Cp~C~~~~~~~--------m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~  333 (369)
                      ....|+.||......        +.-+.+=|..+++-..+.|++||-..-+|..|...
T Consensus        69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~el  126 (135)
T PRK03824         69 AVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIVKGRGV  126 (135)
T ss_pred             eEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEecCceE
Confidence            456899999664332        12233334466666668899999888788666543

>TIGR00244 transcriptional regulator NrdR

Probab=81.47  E-value=2.8  Score=37.81  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccce
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQ  101 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~  101 (369)
                      +.||-||.+ .|+..-.+.--=+..|---=+|+.||+|++..--.+...+    ..+|=. |..+.++|+
T Consensus         1 M~CP~C~~~-dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErve~~~l----~ViKkd-G~re~Fdr~   64 (147)
T TIGR00244         1 MHCPFCQHH-NTRVLDSRLVEDGQSIRRRRECLECHERFTTFERAELLPP----TVIKQD-GVREPFNRE   64 (147)
T ss_pred             CCCCCCCCC-CCEeeeccccCCCCeeeecccCCccCCccceeeecccccc----EEEcCC-CCCCCCCHH
Confidence            469999865 5666666655556677788899999999997655555433    233322 677788886

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=81.13  E-value=1.8  Score=35.83  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      ...||.||+.-. ......+---.|=.-.-+.|-+|||+..|
T Consensus        62 ~~~Cp~Cg~~~a-~f~~~Q~RsadE~~T~fy~C~~C~~~w~~  102 (104)
T TIGR01384        62 RVECPKCGHKEA-YYWLLQTRRADEPETRFYKCTKCGYVWRE  102 (104)
T ss_pred             cCCCCCCCCCee-EEEEeccCCCCCCcEEEEEeCCCCCeeEe
Confidence            468999997632 22233443345556677899999999865

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12

Probab=80.92  E-value=0.7  Score=39.94  Aligned_cols=42  Identities=19%  Similarity=0.400  Sum_probs=27.5

Q ss_pred             eeeccCccCccc-ccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          283 TFPSTCGACAAS-CETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       283 ~~~~~Cp~C~~~-~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      .+.-.||.||++ +..+..++.=--=|..+  -+.|.+|+||..+
T Consensus        72 ~I~~kCpkCghe~m~Y~T~QlRSADEGQTV--FYTC~kC~~k~~e  114 (116)
T KOG2907|consen   72 VIKHKCPKCGHEEMSYHTLQLRSADEGQTV--FYTCPKCKYKFTE  114 (116)
T ss_pred             chhccCcccCCchhhhhhhhcccccCCceE--EEEcCccceeeec
Confidence            556689999987 33344444333334443  4689999999875

2/RPA12 [Transcription]

>TIGR00244 transcriptional regulator NrdR

Probab=80.29  E-value=1.9  Score=38.89  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCC
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPE  335 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~  335 (369)
                      +.||-||++ .++..-...--=|..|=---.|.+||+|++-.-..+..++
T Consensus         1 M~CP~C~~~-dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErve~~~l   49 (147)
T TIGR00244         1 MHCPFCQHH-NTRVLDSRLVEDGQSIRRRRECLECHERFTTFERAELLPP   49 (147)
T ss_pred             CCCCCCCCC-CCEeeeccccCCCCeeeecccCCccCCccceeeecccccc
Confidence            579999987 3444333333446677778899999999986644444433

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=80.27  E-value=1.9  Score=38.23  Aligned_cols=32  Identities=28%  Similarity=0.680  Sum_probs=22.6

Q ss_pred             ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546          286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS  325 (369)
Q Consensus       286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~  325 (369)
                      +.||.|+.+ .|.+..-     +.+  +...|..||++..
T Consensus        98 VlC~~C~sP-dT~l~k~-----~r~--~~l~C~ACGa~~~  129 (133)
T TIGR00311        98 VICRECNRP-DTRIIKE-----GRV--SLLKCEACGAKAP  129 (133)
T ss_pred             EECCCCCCC-CcEEEEe-----CCe--EEEecccCCCCCc
Confidence            569999998 4555431     343  4569999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
2qkd_A	404	Crystal Structure Of Tandem Zpr1 Domains Length = 4		1e-65

>pdb|2QKD|A Chain A, Crystal Structure Of Tandem Zpr1 Domains Length = 404

Iteration: 1
 Score =  246 bits (629), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 46/327 (14%)
Query: 30  VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLK 89
           +ESLCM C  NG TR LLT IP FR++++S+F C HCG  N E+Q AG IQ +G  Y+L 
Sbjct: 11  IESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLT 70
Query: 90  VPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEER 149
           V S  Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+TVEG++ RA   LE  Q  R
Sbjct: 71  VRS--QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTR 128
Query: 150 KKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYER 209
           + ++   AE ID+F+ KL+   +  S FT ++DDP+GNSF+EN +AP  D +L I +Y+R
Sbjct: 129 RAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVENPHAPQKDNALVITYYDR 188
Query: 210 TPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIA 269
           TP+Q  +LG                                   +       ++   ++ 
Sbjct: 189 TPQQAEMLG-----------------------------------LQAEAPEEKAEEEDLR 213
Query: 270 DALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKP 329
           + + +++         + C  C A  +T M + +IP+F+EVI+MA+ C+ CG+R +E+K 
Sbjct: 214 NEVLQFN---------TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKS 264
Query: 330 GGRIPEKGKRITLFVKNINDLSRDLIK 356
           GG +   G RITL + + +D++RDL+K
Sbjct: 265 GGAVEPLGTRITLHITDPSDMTRDLLK 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
2qkd_A	404	Zinc finger protein ZPR1; helical hairpins, beta h	1e-118
2qkd_A	404	Zinc finger protein ZPR1; helical hairpins, beta h	7e-60
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404

 Score =  346 bits (889), Expect = e-118
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 46/335 (13%)

Query: 22  DSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81
                   +ESLCM C  NG TR LLT IP FR++++S+F C HCG  N E+Q AG IQ 
Sbjct: 3   HHHHHHGSIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62

Query: 82  RGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADE 141
           +G  Y+L V    Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+TVEG++ RA   
Sbjct: 63  QGVRYTLTV--RSQEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISG 120

Query: 142 LEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPS 201
           LE  Q  R+ ++   AE ID+F+ KL+   +  S FT ++DDP+GNSF+EN +AP  D +
Sbjct: 121 LEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVENPHAPQKDNA 180

Query: 202 LNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIA 261
           L I +Y+RTP+Q  +LG   +  ++      +                            
Sbjct: 181 LVITYYDRTPQQAEMLGLQAEAPEEKAEEEDL---------------------------- 212

Query: 262 QSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACG 321
                             EV+ F + C  C A  +T M + +IP+F+EVI+MA+ C+ CG
Sbjct: 213 ----------------RNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCG 256

Query: 322 YRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIK 356
           +R +E+K GG +   G RITL + + +D++RDL+K
Sbjct: 257 HRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLK 291

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404

 Score =  197 bits (502), Expect = 7e-60
 Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 2   ENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAF 61
           +  +   +   +  E    +D    + Q  + C  C     T   L  IPHF++V++ A 
Sbjct: 191 QQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMAT 250

Query: 62  ECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPP 121
            C +CG R NEV+  G ++P G   +L +  +D     R ++KSE+ +++IPEL+FE+  
Sbjct: 251 NCENCGHRTNEVKSGGAVEPLGTRITLHI--TDPSDMTRDLLKSETCSVEIPELEFELGM 308

Query: 122 EAQRGSLSTVEGILVRAADELEALQEERKK-LDPQTAEAIDQFLLKLRACAKGDSTFTFI 180
               G  +T+EG+L    + +           +P  +E + +F  KL    +G     FI
Sbjct: 309 AVLGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFI 368

Query: 181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQ 213
           ++DPAGNS+++N+YAP  DP + ++ Y+RT +Q
Sbjct: 369 MNDPAGNSYLQNVYAPEDDPEMKVERYKRTFDQ 401

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 54/391 (13%), Positives = 113/391 (28%), Gaps = 104/391 (26%)

Query: 6   EEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPH 65
           + I+     V           L    +L  +  E  V +F+  ++    K L+S  +   
Sbjct: 52  DHIIMSKDAVSGT--------LRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIK--- 99

Query: 66  CGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPP---- 121
                 +                  PS   +M+  Q  +  +      + +         
Sbjct: 100 --TEQRQ------------------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 122 ------EAQRGSLSTVEG-------ILVRAADELEALQEERKKLDPQTAEAIDQFLLKLR 168
                 E +      ++G        +      L+       K+  +    I  F L L+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSY--KVQCKMDFKI--FWLNLK 190

Query: 169 ACAKGDSTFTFILD-----DPAGNSFIENLYAPSPDPSLNIK-----FYERTPEQQALLG 218
            C   ++    +       DP   S  ++          +I+       +  P +  LL 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLL- 248

Query: 219 YLVDPSQQGESSNVVPSEGLSS-----TSDKREPRGSVGAVAGHRAIAQSNS----AEIA 269
            ++   Q   ++    +  LS      T  K+       A   H ++   +      E+ 
Sbjct: 249 -VLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 270 DALFRY------SAPEEVM-TFPSTCGACAASCETRMFMTRIPYFQEVIV--MASTCDAC 320
             L +Y        P EV+ T P      A S   R  +     ++ V    + +  ++ 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESS 362

Query: 321 GYRNSELKPGGRIPEKGKR---ITLFVKNIN 348
                 L+P     E  K    +++F  + +
Sbjct: 363 -LNV--LEP----AEYRKMFDRLSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
2qkd_A	404	Zinc finger protein ZPR1; helical hairpins, beta h	100.0
2qkd_A	404	Zinc finger protein ZPR1; helical hairpins, beta h	100.0
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	91.65
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	90.99
3ga8_A	78	HTH-type transcriptional regulator MQSA (YGIT/B30;	88.06
1k81_A	36	EIF-2-beta, probable translation initiation factor	85.31
3v2d_5	60	50S ribosomal protein L32; ribosome associated inh	84.64
3o9x_A	133	Uncharacterized HTH-type transcriptional regulato;	84.33
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	83.76
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	83.73
1tfi_A	50	Transcriptional elongation factor SII; transcripti	81.17
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	81.07
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	80.78
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	80.64
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	80.3

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}

Probab=100.00  E-value=3.7e-107  Score=815.14  Aligned_cols=295  Identities=44%  Similarity=0.785  Sum_probs=276.1

Q ss_pred             EEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecce
Q 017546           29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESA  108 (369)
Q Consensus        29 eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~a  108 (369)
                      .++|+||+||++|.|||++|+||||||||||||.|+||||||||||++|+++|||+||+|+|+  +++|||||||||++|
T Consensus        10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~--~~~DLnr~VvKS~ta   87 (404)
T 2qkd_A           10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVR--SQEDMNREVVKTDSA   87 (404)
T ss_dssp             -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEEC--SHHHHTCEEEECTTC
T ss_pred             CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEEC--ChhcccceEEEcCCc
Confidence            578999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             EEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCc
Q 017546          109 TIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNS  188 (369)
Q Consensus       109 ti~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS  188 (369)
                      +|+||||+|||||++++|+||||||+|.+++++|+..|+.|++.+|+.++||++|+++|+++++|+.|||||||||+|||
T Consensus        88 ti~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pfTliidDP~GnS  167 (404)
T 2qkd_A           88 TTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNS  167 (404)
T ss_dssp             EEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHHHHHCHHHHHHHHHHHHHHHHGGGCSSCEEEEEEETTSCC
T ss_pred             EEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecCCCCCCCCCeEEEEecCCHHHHHHcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCchhh
Q 017546          189 FIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEI  268 (369)
Q Consensus       189 ~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (369)
                      ||+++++|++||+|++++|+||+|||++|||.++++....                               .  ..+   
T Consensus       168 ~I~~~~~p~~d~~~~~~~y~Rt~eqn~~LGl~~~~~~~~~-------------------------------~--~~d---  211 (404)
T 2qkd_A          168 FVENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKA-------------------------------E--EED---  211 (404)
T ss_dssp             EECCTTTTSCCTTEEEEEECCCHHHHHHTTC-------------------------------------------CCC---
T ss_pred             eeecCCCCCCCCceEEEEcCCCHHHHHhcCCCcccccccc-------------------------------c--ccc---
Confidence            9999999999999999999999999999999864321000                               0  000   


Q ss_pred             hhhhhccCCCcceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcC
Q 017546          269 ADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNIN  348 (369)
Q Consensus       269 ~~~~~~~~~~~ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~  348 (369)
                      ..+        +|++|++.||+||+++.++|++++|||||+||||||.|++||||+||||+||+++|+|+||||+|++++
T Consensus       212 ~~~--------ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~~~~  283 (404)
T 2qkd_A          212 LRN--------EVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPS  283 (404)
T ss_dssp             CCC--------CEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEECSGG
T ss_pred             ccc--------ceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEECChH
Confidence            113        899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeecceeEEecccCC
Q 017546          349 DLSRDLIKVCNGAIQLISIAV  369 (369)
Q Consensus       349 DL~r~VlkS~ta~i~IPElg~  369 (369)
                      ||+|+||||+||+|+|||||+
T Consensus       284 DL~R~VvKS~ta~i~IPEL~l  304 (404)
T 2qkd_A          284 DMTRDLLKSETCSVEIPELEF  304 (404)
T ss_dssp             GGGCEEEECTTCEEEEGGGTE
T ss_pred             HccceeEecCceEEEeeeeeE
Confidence            999999999999999999985

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}

Probab=100.00  E-value=2.4e-67  Score=527.16  Aligned_cols=193  Identities=33%  Similarity=0.629  Sum_probs=187.1

Q ss_pred             CCCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccce
Q 017546           22 DSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQ  101 (369)
Q Consensus        22 ~~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~  101 (369)
                      +.+.+|+++++.||+||++|.|||++|+||||||||||||.|+||||||||||++|+++|+|+||||+|+  +++||+|+
T Consensus       211 d~~~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~--~~~DL~R~  288 (404)
T 2qkd_A          211 DLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHIT--DPSDMTRD  288 (404)
T ss_dssp             CCCCCEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEEC--SGGGGGCE
T ss_pred             ccccceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEEC--ChHHccce
Confidence            3457999999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             eeeecceEEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHHhh-HhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 017546          102 VVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQ-EERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFI  180 (369)
Q Consensus       102 VvKS~~ati~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~~-~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTli  180 (369)
                      ||||++|+|+||||+|||+|++++|+||||||||.+++++|+..+ ..|++++++.++||++|+++|+++++|+.|||||
T Consensus       289 VvKS~ta~i~IPEL~lei~pg~~~G~~TTVEGlL~~i~d~L~~~~~~~~ds~~~~~~~k~~~f~~kL~~~~~g~~pfTli  368 (404)
T 2qkd_A          289 LLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFI  368 (404)
T ss_dssp             EEECTTCEEEEGGGTEEECTTTTCSEEEEHHHHHHHHHHHHHSSCCCSSSCCCGGGCHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred             eEecCceEEEeeeeeEEecCCCCCceEEeHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence            999999999999999999999999999999999999999999987 5678889999999999999999999999999999


Q ss_pred             EeCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHH
Q 017546          181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQAL  216 (369)
Q Consensus       181 idDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~  216 (369)
                      ||||+|||||+|+++|++||+|++++|+||+|||++
T Consensus       369 idDP~GnS~I~~~~~p~~d~~l~~e~Y~RT~eqne~  404 (404)
T 2qkd_A          369 MNDPAGNSYLQNVYAPEDDPEMKVERYKRTFDQNEE  404 (404)
T ss_dssp             EEETTCCCEECCTTTTSCCTTEEEEEECCCCCTTTC
T ss_pred             EECCCCCccccCCCCCCCCCCceEEEccCChHHccC
Confidence            999999999999999999999999999999999974

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=91.65  E-value=0.28  Score=35.69  Aligned_cols=42  Identities=14%  Similarity=0.363  Sum_probs=25.6

Q ss_pred             EeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546           30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (369)
Q Consensus        30 ies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnE   72 (369)
                      ....||.||.+ ........+--=.|-.-.-+.|.+||++-++
T Consensus        14 ~~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           14 TKITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             EECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             eEeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            46789999984 3333333321122334456899999998654

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=90.99  E-value=0.14  Score=37.32  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      ...||.||+. ........+---.+-.-.-+.|.+||++.++
T Consensus        15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            5689999984 3333444442222333456789999999765

>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A

Probab=88.06  E-value=0.37  Score=37.08  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             eccCccCcccccceeEEEecCC--CCeEE-E---EEeeCCCCCCCccc
Q 017546          285 PSTCGACAASCETRMFMTRIPY--FQEVI-V---MASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~--F~evi-i---ms~~C~~CGyk~~e  326 (369)
                      .++||.||..- +....+++||  =|..+ |   -++.|+.||-..-+
T Consensus         2 ~m~Cp~Cg~~~-l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~   48 (78)
T 3ga8_A            2 HMKCPVCHQGE-MVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN   48 (78)
T ss_dssp             -CBCTTTSSSB-EEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred             ceECCCCCCCe-eEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence            36899998641 2222222222  23333 2   37899999976544

>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1

Probab=85.31  E-value=0.29  Score=32.89  Aligned_cols=31  Identities=26%  Similarity=0.594  Sum_probs=22.1

Q ss_pred             cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546          287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS  325 (369)
Q Consensus       287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~  325 (369)
                      .||.|+.+ +|.+..-     +..  +...|..||+++.
T Consensus         2 lC~~C~~p-eT~l~~~-----~~~--~~l~C~aCG~~~~   32 (36)
T 1k81_A            2 ICRECGKP-DTKIIKE-----GRV--HLLKCMACGAIRP   32 (36)
T ss_dssp             CCSSSCSC-EEEEEEE-----TTE--EEEEEETTTEEEE
T ss_pred             CCcCCCCC-CcEEEEe-----CCc--EEEEhhcCCCccc
Confidence            69999998 6666542     233  4478999999753

>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...

Probab=84.64  E-value=0.33  Score=36.28  Aligned_cols=22  Identities=36%  Similarity=0.816  Sum_probs=17.6

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER   69 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr   69 (369)
                      +.||+||+        ...||        ..|++|||=
T Consensus        31 ~~c~~cGe--------~~~~H--------~vc~~CG~Y   52 (60)
T 3v2d_5           31 VPCPECKA--------MKPPH--------TVCPECGYY   52 (60)
T ss_dssp             EECTTTCC--------EECTT--------SCCTTTCEE
T ss_pred             eECCCCCC--------eecce--------EEcCCCCcC
Confidence            56999987        45688        679999973

>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A

Probab=84.33  E-value=0.65  Score=38.15  Aligned_cols=42  Identities=12%  Similarity=0.162  Sum_probs=24.3

Q ss_pred             eccCccCccc-ccceeEEEecCCCCeEEE----EEeeCCCCCCCccc
Q 017546          285 PSTCGACAAS-CETRMFMTRIPYFQEVIV----MASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~-~~~~m~~~~IP~F~evii----ms~~C~~CGyk~~e  326 (369)
                      .+.||.||+. .......+.+.|=|+.+.    -.+.|+.||-..-+
T Consensus         2 ~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d   48 (133)
T 3o9x_A            2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN   48 (133)
T ss_dssp             CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred             CcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence            4689999876 322223333333344333    36899999965443

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=83.76  E-value=0.62  Score=34.10  Aligned_cols=34  Identities=18%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546          280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN  324 (369)
Q Consensus       280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~  324 (369)
                      .|....-.||.||......      +||.     .+.|..|||..
T Consensus        13 ki~~~~~fCPkCG~~~~ma------~~~d-----r~~C~kCgyt~   46 (55)
T 2k4x_A           13 KLVRKHRFCPRCGPGVFLA------EHAD-----RYSCGRCGYTE   46 (55)
T ss_dssp             CCCCSSCCCTTTTTTCCCE------ECSS-----EEECTTTCCCE
T ss_pred             EEEEccccCcCCCCceeEe------ccCC-----EEECCCCCCEE
Confidence            4555566799999864211      5564     78999999973

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=83.73  E-value=0.25  Score=35.39  Aligned_cols=29  Identities=24%  Similarity=0.564  Sum_probs=18.2

Q ss_pred             cCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546           33 LCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN   70 (369)
Q Consensus        33 ~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn   70 (369)
                      .|+.||..-. ..-|-..        ....||.||||-
T Consensus         5 ~C~rCg~~fs-~~el~~l--------P~IrCpyCGyri   33 (48)
T 4ayb_P            5 RCGKCWKTFT-DEQLKVL--------PGVRCPYCGYKI   33 (48)
T ss_dssp             CCCCTTTTCC-CCCSCCC--------SSSCCTTTCCSC
T ss_pred             EeeccCCCcc-HHHHhhC--------CCcccCccCcEE
Confidence            5999987632 2222222        347899999984

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=81.17  E-value=1.6  Score=31.27  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             eeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546          283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN  324 (369)
Q Consensus       283 ~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~  324 (369)
                      .-...||.||+.- .......+=--.|=.-.-+.|-+|||+.
T Consensus         7 t~~~~Cp~Cg~~~-a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w   47 (50)
T 1tfi_A            7 TDLFTCGKCKKKN-CTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSC-EEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             eCccCCCCCCCCE-EEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence            3456899999762 2223333322334445567899999975

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=81.07  E-value=0.86  Score=32.68  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=23.1

Q ss_pred             ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546          280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN  324 (369)
Q Consensus       280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~  324 (369)
                      .|....--||.||+...  |    .||++     ...|..|||-.
T Consensus        14 kv~~~~k~CP~CG~~~f--m----~~~~~-----R~~C~kCG~t~   47 (50)
T 3j20_Y           14 KVIRKNKFCPRCGPGVF--M----ADHGD-----RWACGKCGYTE   47 (50)
T ss_dssp             CEECSSEECSSSCSSCE--E----EECSS-----EEECSSSCCEE
T ss_pred             EEEEecccCCCCCCceE--E----ecCCC-----eEECCCCCCEE
Confidence            34445556999998642  2    25654     47999999954

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=80.78  E-value=0.57  Score=34.98  Aligned_cols=22  Identities=32%  Similarity=0.872  Sum_probs=17.6

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER   69 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr   69 (369)
                      +.||+||+.        ..||        ..|++|||=
T Consensus        31 ~~c~~cG~~--------~~pH--------~vc~~CG~Y   52 (60)
T 2zjr_Z           31 TECPQCHGK--------KLSH--------HICPNCGYY   52 (60)
T ss_dssp             EECTTTCCE--------ECTT--------BCCTTTCBS
T ss_pred             eECCCCCCE--------eCCc--------eEcCCCCcC
Confidence            469999864        5688        899999974

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=80.64  E-value=0.32  Score=35.34  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546          280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS  325 (369)
Q Consensus       280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~  325 (369)
                      +.+--...||.|++...               .-++.|.+|||+.-
T Consensus         9 ~r~~~k~iCpkC~a~~~---------------~gaw~CrKCG~~~l   39 (51)
T 3j21_g            9 ARIFKKYVCLRCGATNP---------------WGAKKCRKCGYKRL   39 (51)
T ss_dssp             HHSSSEEECTTTCCEEC---------------TTCSSCSSSSSCCC
T ss_pred             HHHhCCccCCCCCCcCC---------------CCceecCCCCCccc
Confidence            44455678999998622               23689999999843

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=80.30  E-value=0.069  Score=42.63  Aligned_cols=40  Identities=23%  Similarity=0.476  Sum_probs=25.7

Q ss_pred             eeccCccCccccccee---EEEecCCCCeEE-----------EEEeeCCCCCCC
Q 017546          284 FPSTCGACAASCETRM---FMTRIPYFQEVI-----------VMASTCDACGYR  323 (369)
Q Consensus       284 ~~~~Cp~C~~~~~~~m---~~~~IP~F~evi-----------ims~~C~~CGyk  323 (369)
                      -.++||.||+++...-   .+..+--|.+++           -.+|.|++||--
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE   60 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEE   60 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence            3568999999876543   333444444433           468999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	88.95
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	86.27
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	85.56
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	85.53
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	84.35
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	83.27

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=88.95  E-value=0.14  Score=36.19  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             eeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       284 ~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      ....||.||+. .......++=--.|=...-+.|-+||+|..|
T Consensus        14 ~~~~CpkC~~~-~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          14 TKITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             EECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             ccCCCCCCCCC-ceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            34689999876 3344445554445666777899999999876

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=86.27  E-value=0.57  Score=32.90  Aligned_cols=42  Identities=17%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             EeccCCCCCCCceE-EEEEeecCCcceEEEEEeeCCCCCCCccce
Q 017546           30 VESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNNEV   73 (369)
Q Consensus        30 ies~Cp~Cg~~g~t-r~llt~IP~FkeiiImSf~C~~CGyrnnEV   73 (369)
                      ....||.||.+..+ ..+.++=  --|=...-|.|..||++..|-
T Consensus        14 ~~~~CpkC~~~~a~~~~~QtRs--aDE~~T~fy~C~~Cg~~wrey   56 (57)
T d1qypa_          14 TKITCPKCGNDTAYWWEMQTRA--GDEPSTIFYKCTKCGHTWRSY   56 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSS--SSCSSEEEEEESSSCCEEECC
T ss_pred             ccCCCCCCCCCceEEEEeeccc--ccCCCeEEEEeCCCCCcceeC
Confidence            45789999977543 3444433  355556669999999987653

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.56  E-value=0.28  Score=36.20  Aligned_cols=41  Identities=12%  Similarity=0.175  Sum_probs=27.7

Q ss_pred             EeccCCCCCCCceE-EEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546           30 VESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (369)
Q Consensus        30 ies~Cp~Cg~~g~t-r~llt~IP~FkeiiImSf~C~~CGyrnnE   72 (369)
                      ....||.||.+..+ ....++-  --|=.-.-|.|-+||++-.+
T Consensus        22 t~~~CpkCg~~~a~~~q~QtRs--aDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          22 SDRECPKCHSRENVFFQSQQRR--KDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCCTTTCCCCEEEEECSSCC--TTCCCCEEEEETTTCCEEEC
T ss_pred             cCCCCCCCCCCeEEEEEeecCc--cCCCceEEEEcCCCCCCccc
Confidence            45789999976533 3333332  34666667999999998765

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=85.53  E-value=0.18  Score=35.85  Aligned_cols=21  Identities=38%  Similarity=0.883  Sum_probs=17.6

Q ss_pred             ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCC
Q 017546           32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGE   68 (369)
Q Consensus        32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGy   68 (369)
                      +.|++||+        ..+||        ..|++|||
T Consensus        30 ~~C~~CG~--------~~~pH--------rvC~~CG~   50 (59)
T d2j0151          30 VPCPECKA--------MKPPH--------TVCPECGY   50 (59)
T ss_dssp             BCCSSSSS--------CBCTT--------CBCTTTCC
T ss_pred             eECCCCCC--------cccce--------eECCCCCe
Confidence            67999997        46788        47999997

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=84.35  E-value=0.22  Score=35.37  Aligned_cols=22  Identities=36%  Similarity=0.890  Sum_probs=17.6

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCC
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGY  322 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGy  322 (369)
                      .+.||.||..        .+||.        .|.+|||
T Consensus        29 l~~C~~CG~~--------~~pHr--------vC~~CG~   50 (59)
T d2j0151          29 LVPCPECKAM--------KPPHT--------VCPECGY   50 (59)
T ss_dssp             CBCCSSSSSC--------BCTTC--------BCTTTCC
T ss_pred             eeECCCCCCc--------cccee--------ECCCCCe
Confidence            3679999974        45884        7999997

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.27  E-value=0.28  Score=36.18  Aligned_cols=41  Identities=17%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546          285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE  326 (369)
Q Consensus       285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e  326 (369)
                      ...||.||.. ...++...+=--.|=.-.-+.|-+|||+..+
T Consensus        23 ~~~CpkCg~~-~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          23 DRECPKCHSR-ENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCTTTCCC-CEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCC-eEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            4689999975 3344555554455666777899999999876