Citrus Sinensis ID: 017566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MKMEPETEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRIKN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcEEEEEEEEccccccccccHcccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKMEPETEIEKWKATVIEVeggdaveadadggadrgrsgddsvvavgegskrsgrsrvkgpwspeQDAVLSELVSKFGARNWSLIARGiagrsgkscrlrwcnqldpavkrkpftdeEDQIIVAAHAVHGNKWAVISRllpgrtdnaiknHWNSTLRRRGVELRRTMklgsvnmmedmnvdktkasseetlscgdvnsfkfleeKDTSSLenlnnhcgdksttevlssqeteepptlfrplarvsafsvyntlddpetasihprqtpsqgplvqvtmpdagtckllegvygermvphwcgygccgiqhggncqssllgpeffdfsgppafpsyeLAAIATDISNVAWLKsglenssvtvmgdeagrikn
Flexible Loop (DISEMBL)
mkmepeteiEKWKATVIEVEGGDAVEadadggadrgrsgddsvvavgegskrsgrsrvkgpwspeQDAVLSELVSKFGARNWSLIARgiagrsgkscrLRWCNQLdpavkrkpftDEEDQIIVAAHAVHGNKWAVISRllpgrtdnaiknhwnstlrrrgvelrrtmklgsvnmmedMNVDktkasseetlscgdvNSFKFLEEKDTSSlenlnnhcgdksTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPetasihprqtpsqgplvqVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGlenssvtvmgdeagrikn
Low Complexity Region (SEG)
MKMEPETEIEKWKATVIEveggdaveadadggadrgrsgddsVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRIKN
Disordered region (IsUnstruct)
*************ATVI***************************************************VLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVEL****************************************************************************PLARVSAFSVYNT********************VQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGL*****************
Disordered Region (DISOPRED)
*************************************************************WSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTL************************************************************************************************************************************VYGERMVPHW***********************FDFSGPPAFPSYELAAIATDISNVAWLK********************
Disordered Region (DISEMBL)
*********EKWKATVIEVEGGDAVEADADG********************************PEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVD*********LSCGDVNSFKFLEEKDTSSLENLNNHCGD****************TLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRIKN
Disordered Region (DISPRO)
*****ETEIEKWKATVIEVEGGDAV***********************GSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVEL**************************************************************************FRPLARVSAFSV**************RQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQ***NCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGL*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMEPETEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRIKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.279	0.337	0.669	1e-38
P52551	743	Myb-related protein B OS=	N/A	no	0.276	0.137	0.588	3e-33
Q03237	686	Myb-related protein B OS=	yes	no	0.276	0.148	0.588	7e-33
P10243	752	Myb-related protein A OS=	yes	no	0.276	0.135	0.588	1e-32
P51960	751	Myb-related protein A OS=	yes	no	0.276	0.135	0.588	1e-32
P10242	640	Transcriptional activator	no	no	0.276	0.159	0.588	2e-32
P46200	640	Transcriptional activator	no	no	0.276	0.159	0.588	2e-32
P06876	636	Transcriptional activator	no	no	0.276	0.160	0.588	2e-32
P01103	641	Transcriptional activator	no	no	0.276	0.159	0.588	3e-32
P48972	704	Myb-related protein B OS=	no	no	0.276	0.144	0.578	3e-32

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 84/103 (81%)

Query: 57  RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116
           R+KGPWSPE+D  L  LV K+G RNW++I++ I GRSGKSCRLRWCNQL P V+ +PF+ 
Sbjct: 4   RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSA 63

Query: 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           EED+ I  AHA  GNKWA I+RLL GRTDNA+KNHWNSTL+R+
Sbjct: 64  EEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 81/102 (79%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           VKGPW+ E+D  + ELV K+G ++W+LIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 82  VKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEE 141

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH V GN+WA I++LLPGRTDNA+KNHWNST++R+
Sbjct: 142 EDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Xenopus laevis (taxid: 8355)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 80/102 (78%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           VKGPW+ E+D  + ELV K+G + W+LIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 82  VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 141

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH V GN+WA I++LLPGRTDNA+KNHWNST++R+
Sbjct: 142 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WSLIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDN+IKNHWNST+RR+
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WSLIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDN+IKNHWNST+RR+
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + ELV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 80/102 (78%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           VKGPW+ E+D  + ELV K+G + W+LIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 82  VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEE 141

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH V GN+WA I+++LPGRTDNA+KNHWNST++R+
Sbjct: 142 EDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
449506463	377	PREDICTED: uncharacterized LOC101212170	0.929	0.909	0.670	1e-126
449460333	377	PREDICTED: uncharacterized protein LOC10	0.929	0.909	0.667	1e-125
225440558	410	PREDICTED: uncharacterized protein LOC10	0.905	0.814	0.670	1e-125
255573943	390	r2r3-myb transcription factor, putative	0.962	0.910	0.625	1e-125
302398943	389	MYB domain class transcription factor [M	0.897	0.850	0.652	1e-119
71041078	391	MYB2 [Malus x domestica]	0.856	0.808	0.662	1e-117
356504317	352	PREDICTED: uncharacterized protein LOC10	0.888	0.931	0.639	1e-117
356496114	350	PREDICTED: uncharacterized protein LOC10	0.834	0.88	0.651	1e-115
359476030	330	PREDICTED: myb protein-like [Vitis vinif	0.818	0.915	0.674	1e-114
225449244	378	PREDICTED: transcription factor MYB104 [	0.842	0.822	0.573	3e-98

>gi|449506463|ref|XP_004162756.1| PREDICTED: uncharacterized LOC101212170 [Cucumis sativus]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/355 (67%), Positives = 272/355 (76%), Gaps = 12/355 (3%)

Query: 19  VEGGDAVEADADGGADRGRSGDDSVVAVGEGSK---RSGRSRVKGPWSPEQDAVLSELVS 75
           V+  DAV + AD G     SGDD++  VGEG     R G+ RVKGPWSPE+DA+LS LVS
Sbjct: 19  VDACDAVASVADCG-----SGDDALPMVGEGEATGGRGGKDRVKGPWSPEEDAILSRLVS 73

Query: 76  KFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAV 135
           KFGARNWSLIARGIAGRSGKSCRLRWCNQLDP+VKRKPFTDEED+IIVAAHAVHGNKWA 
Sbjct: 74  KFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAVHGNKWAA 133

Query: 136 ISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGD 195
           I+RLLPGRTDNAIKNHWNSTLRRR  EL R +KL S N+++D +++KTK SSEETLSCGD
Sbjct: 134 IARLLPGRTDNAIKNHWNSTLRRRCTELER-IKLESGNVVDDASLEKTKGSSEETLSCGD 192

Query: 196 VNSFKFLEEKDTSSLENLNNHCGDKS--TTEVLSSQETEEPPTLFRPLARVSAFSVYNTL 253
           VNSFK ++ KDT S E L++   DK     E   + E  E PTLFRP+ARVSAFSVYN L
Sbjct: 193 VNSFKSMDGKDTCSREQLDDQYEDKVPIVVEGQFTHEVNEQPTLFRPVARVSAFSVYNPL 252

Query: 254 DDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQ 313
           D   +     R  P QGPL+QV+ PD    K LEGVYG+R VPH CG+GCC   + G+  
Sbjct: 253 DGQGSLRPFLRPVPMQGPLIQVSKPDVEASKFLEGVYGDRSVPHQCGHGCCKSHNQGSPL 312

Query: 314 SSLLGPEFFDFS-GPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRI 367
            SLLGPEF DFS  PP+FPS+ELAAIATDISN+AWLKSGLEN SV  MGD AGR+
Sbjct: 313 ESLLGPEFVDFSEPPPSFPSFELAAIATDISNLAWLKSGLENGSVRAMGDSAGRL 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460333|ref|XP_004147900.1| PREDICTED: uncharacterized protein LOC101212170 [Cucumis sativus]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 271/355 (76%), Gaps = 12/355 (3%)

Query: 19  VEGGDAVEADADGGADRGRSGDDSVVAVGEGSK---RSGRSRVKGPWSPEQDAVLSELVS 75
           V+  DAV + AD G     SGDD++  VGEG     R G+ RVKGPWSPE+DA+LS LVS
Sbjct: 19  VDACDAVASVADCG-----SGDDALPMVGEGEATGGRGGKDRVKGPWSPEEDAILSRLVS 73

Query: 76  KFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAV 135
           KFGARNWSLIARGIAGRSGKSCRLRWCNQLDP+VKRKPFTDEED+IIVAAHAVHGNKWA 
Sbjct: 74  KFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAVHGNKWAA 133

Query: 136 ISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGD 195
           I+RLLPGRTDNAIKNHWNSTLRRR  EL R +KL S N+++D +++KTK SSEETLSCGD
Sbjct: 134 IARLLPGRTDNAIKNHWNSTLRRRCTELER-IKLESGNVVDDASLEKTKGSSEETLSCGD 192

Query: 196 VNSFKFLEEKDTSSLENLNNHCGDKS--TTEVLSSQETEEPPTLFRPLARVSAFSVYNTL 253
           VNSFK ++ KD  S E L++   DK     E   + E  E PTLFRP+ARVSAFSVYN L
Sbjct: 193 VNSFKSMDGKDACSREQLDDQYEDKVPIVVEGQFTHEVNEQPTLFRPVARVSAFSVYNPL 252

Query: 254 DDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQ 313
           D   +     R  P QGPL+QV+ PD    K LEGVYG+R VPH CG+GCC   + G+  
Sbjct: 253 DGQGSLRPFLRPVPMQGPLIQVSKPDVEASKFLEGVYGDRSVPHQCGHGCCKSHNQGSPL 312

Query: 314 SSLLGPEFFDFS-GPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRI 367
            SLLGPEF DFS  PP+FPS+ELAAIATDISN+AWLKSGLEN SV  MGD AGR+
Sbjct: 313 ESLLGPEFVDFSEPPPSFPSFELAAIATDISNLAWLKSGLENGSVRAMGDSAGRL 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440558|ref|XP_002276375.1| PREDICTED: uncharacterized protein LOC100256309 [Vitis vinifera] gi|297740274|emb|CBI30456.3| unnamed protein product [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/343 (67%), Positives = 272/343 (79%), Gaps = 9/343 (2%)

Query: 32  GADRGRSGDDSVVAVGEGSK-------RSGR-SRVKGPWSPEQDAVLSELVSKFGARNWS 83
           GAD G  GD  VV  GEG+        ++ R  RVKGPWSPE+DA+LS LVSKFGARNWS
Sbjct: 11  GADGGSPGDAMVVGEGEGNGKGSGSSSQAARGDRVKGPWSPEEDAILSRLVSKFGARNWS 70

Query: 84  LIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGR 143
           LIARGIAGRSGKSCRLRWCNQLDP+VKRKPFTDEED+IIVAAHA+HGNKWA I+RLL GR
Sbjct: 71  LIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWASIARLLQGR 130

Query: 144 TDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLE 203
           TDNAIKNHWNSTLRRR +E+ R  KL S N++ED+++DKTKASSEET+SCGD NS K LE
Sbjct: 131 TDNAIKNHWNSTLRRRCMEIDRA-KLESGNIVEDVSLDKTKASSEETMSCGDANSSKSLE 189

Query: 204 EKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHP 263
            KD +S +N+ +   +++  E   S E ++PPTLFRP+ARVSAF+VY++LD PE A   P
Sbjct: 190 GKDVNSSDNMADQNEERAQIEGQFSHEAQDPPTLFRPVARVSAFNVYSSLDGPEHAFPFP 249

Query: 264 RQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFD 323
           R  P QGPL+Q + PDAG CKL++G  GE++VP  CG+GCC    GGN  +SLLGPEF +
Sbjct: 250 RPVPMQGPLIQASTPDAGICKLIQGDSGEQLVPQRCGHGCCESPRGGNLGNSLLGPEFVE 309

Query: 324 FSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGR 366
           FS PP F S+ELAAIATDISN+AWLKSGLENS+V VMGD AGR
Sbjct: 310 FSEPPPFSSFELAAIATDISNIAWLKSGLENSTVRVMGDAAGR 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573943|ref|XP_002527890.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223532741|gb|EEF34521.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/360 (62%), Positives = 278/360 (77%), Gaps = 5/360 (1%)

Query: 8   EIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQD 67
           ++E  + TV+EV+G ++ +   + G+       D ++   E ++   + RVKGPWSPE+D
Sbjct: 2   DLEMKEKTVVEVDGANSGDGGGEDGS----GSGDDLLLAVEKTEACSKDRVKGPWSPEED 57

Query: 68  AVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHA 127
           A+LS LVSKFGARNWSLIARGI+GRSGKSCRLRWCNQLDPAVKRKPFTDEED+II AAHA
Sbjct: 58  AILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIAAAHA 117

Query: 128 VHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASS 187
           VHGNKWAVI+RLLPGRTDNAIKNHWNSTLRR+    +RT +L S NM +D  +DK KASS
Sbjct: 118 VHGNKWAVIARLLPGRTDNAIKNHWNSTLRRKSTVCQRT-RLASGNMDQDAYLDKAKASS 176

Query: 188 EETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAF 247
           EET+SCGD NSFK LE KD SSL+N+++ C +K  +++ S+ E +E PT+FRP AR SAF
Sbjct: 177 EETISCGDANSFKSLEGKDVSSLDNMDDQCEEKVPSQIPSTNEAKELPTVFRPRARFSAF 236

Query: 248 SVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQ 307
           +VYN +D PE AS   R  P  GP+VQ +  D G CKLL+G Y E+MVPH CG+GCC  Q
Sbjct: 237 NVYNPVDGPEAASPCLRSVPVHGPIVQTSTADDGICKLLDGAYCEQMVPHHCGHGCCEAQ 296

Query: 308 HGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRI 367
           +G + Q+SLLGPEF D   PP+FPS+ELAAIA DISN+AWLKSGLEN++V VMG+ A RI
Sbjct: 297 NGNSKQNSLLGPEFVDSLEPPSFPSFELAAIARDISNLAWLKSGLENNNVRVMGETASRI 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398943|gb|ADL36766.1| MYB domain class transcription factor [Malus x domestica]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/337 (65%), Positives = 260/337 (77%), Gaps = 6/337 (1%)

Query: 31  GGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA 90
           GG D G    +  VA G   ++SGR  VKGPWSPE+DAVL+ LVS FGARNWSLIARGI 
Sbjct: 19  GGVDSG----EEAVAGGGSRRKSGRDNVKGPWSPEEDAVLTWLVSNFGARNWSLIARGID 74

Query: 91  GRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKN 150
           GRSGKSCRLRWCNQLDPAVKRKPFT EED++IVAAHA+HGNKWA I+RLLPGRTDNAIKN
Sbjct: 75  GRSGKSCRLRWCNQLDPAVKRKPFTHEEDRMIVAAHAIHGNKWAAIARLLPGRTDNAIKN 134

Query: 151 HWNSTLRRRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSL 210
           HWNSTL+RR ++  + +KL S NM+ED++ DKTK SSEET S GDVNS K +E ++ SSL
Sbjct: 135 HWNSTLKRRCMDTDK-IKLESGNMVEDVSFDKTKGSSEET-SYGDVNSSKSMEGREVSSL 192

Query: 211 ENLNNHCGDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQG 270
           E++++      ++EV  S E  E PTLFRP+AR+SAFSVYN  +  E AS  PR  P QG
Sbjct: 193 EHMDDQDEYNGSSEVQFSHEATEQPTLFRPMARISAFSVYNQSNSQEPASSFPRPIPVQG 252

Query: 271 PLVQVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAF 330
           PLVQ +  D G  K LEGVYGE+ VP  CG+GCC  + G N Q+SLLGPEF +FS PP F
Sbjct: 253 PLVQASKLDVGINKFLEGVYGEQSVPDRCGHGCCRAESGMNFQNSLLGPEFVEFSEPPLF 312

Query: 331 PSYELAAIATDISNVAWLKSGLENSSVTVMGDEAGRI 367
           PS+ELAAIATDISN+AWLKSGLEN+ V  +G+ AGRI
Sbjct: 313 PSFELAAIATDISNLAWLKSGLENNIVRAVGETAGRI 349

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041078|gb|AAZ20427.1| MYB2 [Malus x domestica]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 250/317 (78%), Gaps = 1/317 (0%)

Query: 51  KRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK 110
           ++SGR  VKGPWSPE+DAVLS LVS FGARNWSLIARGI GRSGKSCRLRWCNQLDPAVK
Sbjct: 36  RKSGRDNVKGPWSPEEDAVLSRLVSNFGARNWSLIARGIDGRSGKSCRLRWCNQLDPAVK 95

Query: 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLG 170
           RKPFTD ED++IVAAHAVHGNKWA I+RLLPGRTDNAIKNHWNSTL+RR ++  + +KL 
Sbjct: 96  RKPFTDAEDRMIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMDPEK-IKLE 154

Query: 171 SVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQE 230
           S NM+ED+++DKTK SSEET S GDVNS K +E ++ SS +++++      ++EV  S E
Sbjct: 155 SGNMVEDVSLDKTKGSSEETFSYGDVNSSKSMEGREVSSFQHMDDQDEYNGSSEVQFSHE 214

Query: 231 TEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVY 290
             E P LFRP+AR+SAFSVYN  +  E  S  PR  P+ GPLV+ +  D G  K L+GVY
Sbjct: 215 ATEQPNLFRPVARISAFSVYNQSNSQEPESSFPRPIPAPGPLVRESKLDVGISKFLKGVY 274

Query: 291 GERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKS 350
           GE  VP  C +GCC  Q+G N Q+SLLGPEF +FS PP+FPS+ELAAIATDISN+AWLKS
Sbjct: 275 GELSVPDQCAHGCCCAQNGMNFQNSLLGPEFVEFSEPPSFPSFELAAIATDISNLAWLKS 334

Query: 351 GLENSSVTVMGDEAGRI 367
           GLEN+ V  MGD AGRI
Sbjct: 335 GLENNRVRGMGDAAGRI 351

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504317|ref|XP_003520943.1| PREDICTED: uncharacterized protein LOC100813406 [Glycine max]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 38  SGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSC 97
           SGD+ ++ +  GS   GR RVKGPWSPE+D +LS LVSKFGARNWSLIARGI+GRSGKSC
Sbjct: 14  SGDEGLLGLDSGSGGGGRDRVKGPWSPEEDVILSRLVSKFGARNWSLIARGISGRSGKSC 73

Query: 98  RLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR 157
           RLRWCNQLDPAVKRKPFTDEEDQ+IVAAHA+HGNKWA I+RLLPGRTDNAIKNHWNSTLR
Sbjct: 74  RLRWCNQLDPAVKRKPFTDEEDQMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLR 133

Query: 158 RRGVELRRTMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHC 217
           RRGV    T+KL S + MED++++K KASSE+TLSCGDV S K  E +D SS+E +++  
Sbjct: 134 RRGVG-HDTIKLESGSFMEDVSLEKAKASSEDTLSCGDV-SLKSSEGRDVSSMEIMDDKS 191

Query: 218 GDKSTTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTM 277
             K+ TE     E ++PPTLFRP+ARVSAF+VY++ D  + ++  PR    QGP++Q + 
Sbjct: 192 DGKAQTEGQLHHEVKDPPTLFRPVARVSAFNVYHSFDGTQPSTSIPRSVSMQGPVLQSSK 251

Query: 278 PDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAA 337
           PD    + LEG++G++ VPH CG+GCC   +G   +SSLLGPEF +FS PP+FP++ELAA
Sbjct: 252 PDMEFYRALEGIFGDQSVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPPSFPNFELAA 311

Query: 338 IATDISNVAWLKSGLENSSVTVMGDEAGRI 367
           IATDISN+AWLKSGLE+SSV +MG+ +GR+
Sbjct: 312 IATDISNLAWLKSGLESSSVKIMGNTSGRV 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496114|ref|XP_003516915.1| PREDICTED: uncharacterized protein LOC100811740 [Glycine max]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/310 (65%), Positives = 251/310 (80%), Gaps = 2/310 (0%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           VKGPWSPE+DA+LS LV KFGARNWSLIARGI+GRSGKSCRLRWCNQLDPAVKRKPFTDE
Sbjct: 32  VKGPWSPEEDAILSRLVGKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDE 91

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMED 177
           ED++IVAAHA+HGNKWA I+RLLPGRTDNAIKNHWNSTLRRRGV    T+KL SV+ MED
Sbjct: 92  EDRMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVG-HDTIKLESVSFMED 150

Query: 178 MNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEEPPTL 237
           ++++K KASSE+TLSCGDV S K  E +D SS+E +++   DK+ TE     E ++ PTL
Sbjct: 151 VSLEKAKASSEDTLSCGDV-SLKSSEGRDVSSMEIMDDKSDDKAQTEGQIHHEVKDLPTL 209

Query: 238 FRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKLLEGVYGERMVPH 297
           FRP+ARVSAF+VY++ D  + ++   R  P QG ++Q + PD   C++LEG+ G++ VPH
Sbjct: 210 FRPVARVSAFNVYHSFDGTQPSTSIKRPVPMQGAVLQSSKPDMEFCRMLEGICGDQSVPH 269

Query: 298 WCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNVAWLKSGLENSSV 357
            CG+GCC    G   +SSLLGPEF +FS PP+FP++ELAAIATDISN+AWLKSGLE+SS 
Sbjct: 270 QCGHGCCAAPDGRKSESSLLGPEFVEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSA 329

Query: 358 TVMGDEAGRI 367
            +MG+ +GR+
Sbjct: 330 KMMGNTSGRV 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476030|ref|XP_002281298.2| PREDICTED: myb protein-like [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/304 (67%), Positives = 243/304 (79%), Gaps = 2/304 (0%)

Query: 47  GEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD 106
           G  S+ +   RVKGPWSPE+D +LS LVSKFGARNWSLIA GIAGRSGKSCRLRWCN+LD
Sbjct: 22  GSSSQAARGDRVKGPWSPEEDVILSRLVSKFGARNWSLIACGIAGRSGKSCRLRWCNKLD 81

Query: 107 PAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRT 166
           P+VKRKPFTDEED+IIVA HA+HGNKWA I+RLL GRTDNAIKNHWNSTLRRR +E+ R 
Sbjct: 82  PSVKRKPFTDEEDRIIVAVHAIHGNKWASIARLLLGRTDNAIKNHWNSTLRRRCMEIDRA 141

Query: 167 MKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVL 226
            KL S N+MED+N DKTKASSEET+SCGD NS K LE KD +S +N+ +   +++  E  
Sbjct: 142 -KLESGNIMEDVNSDKTKASSEETMSCGDANSSKSLEGKDVNSSDNMADQNEERAQIEGQ 200

Query: 227 SSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQ-GPLVQVTMPDAGTCKL 285
            S E ++PPTLFRP+ARVSAF+VY++LD PE A   PR  P Q GPL+Q + PDAG CKL
Sbjct: 201 FSHEAQDPPTLFRPVARVSAFNVYSSLDGPEHAFPFPRPVPMQGGPLIQASTPDAGICKL 260

Query: 286 LEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNV 345
           ++G  GE++VP  CG+GCC I  GGN  +SLLGPEF +FS PP F S+ELAAIATDISN+
Sbjct: 261 IQGDSGEQLVPQRCGHGCCEIPRGGNLGNSLLGPEFVEFSEPPPFSSFELAAIATDISNI 320

Query: 346 AWLK 349
           AWLK
Sbjct: 321 AWLK 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449244|ref|XP_002276341.1| PREDICTED: transcription factor MYB104 [Vitis vinifera] gi|296086112|emb|CBI31553.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/321 (57%), Positives = 233/321 (72%), Gaps = 10/321 (3%)

Query: 48  EGSKRSG--RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105
           +G  R+G   SRV+GPWSPE+DA+LS+LVSKFG RNWSLIARGI+GRSGKSCRLRWCNQL
Sbjct: 28  DGDTRAGGSSSRVRGPWSPEEDAILSQLVSKFGPRNWSLIARGISGRSGKSCRLRWCNQL 87

Query: 106 DPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRR 165
           DP VKRKPFT+EED+II+AAH+ HGNKWA I+RLLPGRTDNAIKNHWNSTL+R+  +L  
Sbjct: 88  DPCVKRKPFTEEEDRIIIAAHSHHGNKWASIARLLPGRTDNAIKNHWNSTLKRQCKKL-D 146

Query: 166 TMKLGSVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEV 225
             K  S +M+ED + D+TKASSEET+S GD++S K  E +D S +++    C +K  T  
Sbjct: 147 MFKPISGSMLEDGSPDRTKASSEETMSPGDIDSRKPPEGRDASLMDDGPYQCENKVQT-- 204

Query: 226 LSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAGTCKL 285
                TE+  ++ RP+ARVSAFSVYN        S   R  P +GPLVQ + P    CK 
Sbjct: 205 -----TEDHSSISRPMARVSAFSVYNPPSGLRVGSAFSRAAPMKGPLVQTSKPHLEVCKF 259

Query: 286 LEGVYGERMVPHWCGYGCCGIQHGGNCQSSLLGPEFFDFSGPPAFPSYELAAIATDISNV 345
           LEGVY E  +P  CG+GCC    GG  Q SLLGPEF ++  PP F S+ELA+IA +++++
Sbjct: 260 LEGVYSEPTIPLQCGHGCCEAPTGGQSQGSLLGPEFIEYMEPPPFSSHELASIAAELNSI 319

Query: 346 AWLKSGLENSSVTVMGDEAGR 366
           AW+KSGL NSS ++  + AG+
Sbjct: 320 AWIKSGLVNSSSSMQDETAGQ 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.848	0.796	0.530	9.1e-84
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.834	0.771	0.495	9.6e-73
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.501	0.504	0.497	4.5e-43
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.495	0.571	0.479	4.2e-40
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.300	0.359	0.675	7.8e-39
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.279	0.337	0.669	2.4e-37
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.279	0.342	0.669	1.7e-36
TAIR|locus:2175931	323	MYB56 "myb domain protein 56"	0.455	0.520	0.436	5.8e-34
TAIR|locus:2030903	249	MYB52 "myb domain protein 52"	0.281	0.417	0.576	1.5e-33
UNIPROTKB|Q17QY0	695	MYBL2 "Uncharacterized protein	0.276	0.146	0.578	1.7e-33

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 174/328 (53%), Positives = 222/328 (67%)

Query:    50 SKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAV 109
             S R  R RVKGPWS E+D VLSELV + GARNWS IAR I GRSGKSCRLRWCNQL+P +
Sbjct:    46 SGRGRRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNL 105

Query:   110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKL 169
              R  FT+ EDQ I+AAHA+HGNKWAVI++LLPGRTDNAIKNHWNS LRRR ++  +   +
Sbjct:   106 IRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNI 165

Query:   170 GSVNMM-EDMNVDKTK--ASSEETLSCGD----VNSFKFLEEKD-TSSLENLNNHCGDKS 221
             G+ +++ +D   D+T   ASSEETLS G            E K+ T+S+E     C +K+
Sbjct:   166 GTGSLVVDDSGFDRTTTVASSEETLSSGGGCHVTTPIVSPEGKEATTSMEMSEEQCVEKT 225

Query:   222 TTEVLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLVQVTMPDAG 281
               E +S Q+ ++PPTLFRP+ R+S+F+  N ++   +  I   Q  +Q   +Q +  DA 
Sbjct:   226 NGEGISRQDDKDPPTLFRPVPRLSSFNACNHMEGSPSPHI---QDQNQ---LQSSKQDAA 279

Query:   282 TCKLLEGVYGERMVPHWCGYGCCGIQHGGNCQS-SLLGPEFFDFSGPPAFPSYELAAIAT 340
               +LLEG Y ER VP  CG GCC     G+ Q  SLLGPEF D+   P FPS ELAAIAT
Sbjct:   280 MLRLLEGAYSERFVPQTCGGGCCSNNPDGSFQQESLLGPEFVDYLDSPTFPSSELAAIAT 339

Query:   341 DISNVAWLKSGLENSSVTVMGDEAGRIK 368
             +I ++AWL+SGLE+SSV VM D  GR++
Sbjct:   340 EIGSLAWLRSGLESSSVRVMEDAVGRLR 367

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 161/325 (49%), Positives = 211/325 (64%)

Query:    47 GEGSKRSG-RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105
             G G    G RS+VKGPWS E+DAVL++LV K G RNWSLIARGI GRSGKSCRLRWCNQL
Sbjct:    43 GCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQL 102

Query:   106 DPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRR 165
             DP +KRKPF+DEED++I++AHAVHGNKWAVI++LL GRTDNAIKNHWNSTLRR+  +L  
Sbjct:   103 DPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWN 162

Query:   166 TMK--LGSVNM--MEDMNVDKTK--ASSEETLSCGDVNSF--KFLEEKDTSSLENLNNHC 217
               +    SV    +++ NVD+T    SS++ L  GD+NS   K  +  D    E  N   
Sbjct:   163 NGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDINSSPPKPPQVSDVVMEEAANEPQ 222

Query:   218 GDKSTTE----VLSSQETEEPPTLFRPLARVSAFSVYNTLDDPETASIHPRQTPSQGPLV 273
               +   E    V+S+  TE    +FRP+ARV AFS+YN          +    P +GPL+
Sbjct:   223 EPQEQQEQAPPVVSNVPTEN--NVFRPVARVGAFSIYNPTSQKNGYRDY-NIVPCEGPLI 279

Query:   274 QVTMPDAGTCKLLEGVYGERMVPHWCGYGCCGIQHGGN-CQSSLLGPEFFDFSGPPAFPS 332
             Q   PD+   K L+ +  E  +P  CG+GC  +       ++S+LGPEF D+  P A  +
Sbjct:   280 QAAKPDSLAGKFLQSLCDEPQIPSKCGHGCSTLPAETKFSRNSVLGPEFVDYEEPSAVFN 339

Query:   333 YELAAIATDISNVAWLKSGLENSSV 357
              EL +IATD++N+AW+KSGL+N+ V
Sbjct:   340 QELISIATDLNNIAWIKSGLDNAVV 364

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 98/197 (49%), Positives = 125/197 (63%)

Query:    54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP 113
             G+S+VKGPW PEQD  L+ LV   G RNW+LI+RGI GRSGKSCRLRWCNQLDP +KRKP
Sbjct:    45 GKSKVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKP 104

Query:   114 FTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVN 173
             F+DEE+ +I++A AV GNKW+VI++LLPGRTDNAIKNHWNS LRR+  E  +   L    
Sbjct:   105 FSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQWKIPLL---- 160

Query:   174 MMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEVLSSQETEE 233
             M     V +   S    +S          +E++T  L +      DK   E       + 
Sbjct:   161 MSNTEIVYQLYPSMVRRISNASPKEH-LPQEEETGVLSD------DKMDDEAKEPPREQN 213

Query:   234 PPT-LFRPLARVSAFSV 249
               T ++RP+AR+ AFSV
Sbjct:   214 SKTGVYRPVARMGAFSV 230

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 92/192 (47%), Positives = 117/192 (60%)

Query:    52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKR 111
             R    R+KGPWSPE+D +L  LV K G RNWSLI++ I GRSGKSCRLRWCNQL P V+ 
Sbjct:     6 RKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEH 65

Query:   112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR-GVELRRTMKLG 170
             + F+ EED+ I+ AHA  GNKWA ISRLL GRTDNAIKNHWNSTL+R+  VE  ++   G
Sbjct:    66 RAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVE-GQSCDFG 124

Query:   171 SVNMMEDMNVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGD----KST--TE 224
               N   D N+ + +         G V++  ++     S  +      G     K T  +E
Sbjct:   125 G-NGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQSSGGAHVFKPTVRSE 183

Query:   225 VLSSQETEEPPT 236
             V +S   E+PPT
Sbjct:   184 VTASSSGEDPPT 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query:    49 GSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA 108
             GS R    R+KGPWSPE+D +L  LV K G RNWSLI++ I GRSGKSCRLRWCNQL P 
Sbjct:     3 GSTRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPE 62

Query:   109 VKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
             V+ + FT EED  I+ AHA  GNKWA I+RLL GRTDNAIKNHWNSTL+R+
Sbjct:    63 VEHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 69/103 (66%), Positives = 84/103 (81%)

Query:    57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116
             R+KGPWSPE+D  L  LV K+G RNW++I++ I GRSGKSCRLRWCNQL P V+ +PF+ 
Sbjct:     4 RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSA 63

Query:   117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
             EED+ I  AHA  GNKWA I+RLL GRTDNA+KNHWNSTL+R+
Sbjct:    64 EEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 69/103 (66%), Positives = 82/103 (79%)

Query:    57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116
             RVKGPWS E+D  L  +V K+G RNWS I++ I GRSGKSCRLRWCNQL P V+ +PF+ 
Sbjct:     4 RVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSP 63

Query:   117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
             EED+ IV A A  GNKWA I+RLL GRTDNA+KNHWNSTL+R+
Sbjct:    64 EEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2175931 MYB56 "myb domain protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 79/181 (43%), Positives = 111/181 (61%)

Query:    59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
             +G W P +DA L ELV++FG +NW+LI+  + GRSGKSCRLRW NQLDP + ++ FT+EE
Sbjct:    93 RGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFTEEE 152

Query:   119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMMEDM 178
             +  ++AAH  +GNKWA+ISRL PGRTDNA+KNHW+  + RR  E +R  +     +  D 
Sbjct:   153 EFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRESQRQRQQPPPTLSRD- 211

Query:   179 NVDKTKASSEETLSCGDVNSFKFLEEKDTSSLENLNNHCGDKSTTEV-LSSQETEEPPTL 237
               + T +SS     C   N  KF+ E+D     +  + C    TTE+ L+   +   P  
Sbjct:   212 -AEMTVSSS-----CR-YNQGKFINEEDDDDDVSAVSTC----TTELSLTPPSSAYQPRF 260

Query:   238 F 238
             F
Sbjct:   261 F 261

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2030903 MYB52 "myb domain protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 60/104 (57%), Positives = 81/104 (77%)

Query:    59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
             +G W P +D  L ELV +FG  NW+ IA+ ++GRSGKSCRLRW NQLDP + R PFT+EE
Sbjct:     5 RGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEEE 64

Query:   119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162
             ++ ++A+H +HGN+W+VI+R  PGRTDNA+KNHW+  + RRG E
Sbjct:    65 EERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRE 108

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

UNIPROTKB|Q17QY0 MYBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
 Identities = 59/102 (57%), Positives = 80/102 (78%)

Query:    58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
             VKGPW+ E+D  + ELV K+G + W+LIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct:    82 VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEE 141

Query:   118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
             ED+II  AH V GN+WA I+++LPGRTDNA+KNHWNST++R+
Sbjct:   142 EDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

GO:0031523 "Myb complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-27
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-25
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-19
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-07
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.003

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  112 bits (282), Expect = 1e-27
 Identities = 61/136 (44%), Positives = 80/136 (58%), Gaps = 7/136 (5%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAG--RSGKSCRLRWCNQLDPAVKRKPFTD 116
           KG WSPE+D  L   ++K+G   WS + +  AG  R GKSCRLRW N L P +KR  F+ 
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNS----TLRRRGVELRRTMKLGSV 172
           +E+ +I+  HAV GN+W+ I+  LPGRTDN IKN WNS     LR+RG++      L  V
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV 132

Query: 173 NMMEDMNVDKTKASSE 188
              ED N      S +
Sbjct: 133 ENGEDKNPPTDDKSDK 148

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  102 bits (255), Expect = 2e-25
 Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNW-SLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +GPW+ E+D +L   + K G   W SL  R    R GKSCRLRW N L P+VKR   T +
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           E+ +I+  H + GN+W++I+  +PGRTDN IKN+WN+ LR++
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 89.5 bits (222), Expect = 2e-19
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 57  RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116
           R  G W   +D  L  LV K G  NWS +A  +   +GK    RW N L+P +K+K +++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSE 77

Query: 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTMKLGSVNMME 176
           EED+ ++      G +W+ I+     RT       + +TL           KL   N  +
Sbjct: 78  EEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL--SSTHDSKLQRRNEFD 135

Query: 177 DMNVDKTKAS 186
            ++     ++
Sbjct: 136 KIDPFNENSA 145

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 111 RKPFTDEEDQIIVAAHAVHGNK-WAVISRLLPGRTDNAIKNHWNSTL 156
           R P+T EED++++ A   HGN  W+ I++ LPGRTDN  KN WN+ L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105
           +GPW+PE+D +L E V K G  NWS IA+ + GR+   C+ RW N L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 65.4 bits (160), Expect = 6e-14
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 62  WSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQI 121
           W+ E+D  L +LV K+G  +W  IA  + GR+  +CR RW  +L P   R P+T EEDQ 
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 122 I 122
           +
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           KG W+ E+D +L ELV K+G  NW  IA+ + GR+ + CR RW N L P
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 111 RKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRR 158
           +  +T+EED++++     +G N W  I++ LPGRT    +  W + L+ 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 61  PWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN 103
           PW+ E+D +L E V K+G  NW  IA+ + GR+ K CR RW N
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 113 PFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTL 156
           P+T+EED++++ A   +G N W  I++ LPGRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 114 FTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           +T+EED+ ++     +GN W  I+  L GRT +A ++ W   LR +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPK 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 61  PWSPEQDAVLSELVSKFGARNWSLI---ARGIAGRSGKSCRLRWCN 103
            W+ E+D  L E V K+G  NW+ I      +  R+    + +W N
Sbjct: 2   KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	99.98
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.55
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.4
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.39
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.23
PLN03212	249	Transcription repressor MYB5; Provisional	99.21
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
PLN03091	459	hypothetical protein; Provisional	99.2
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.09
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.09
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.05
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.0
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.96
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.24
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.16
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.8
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.76
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.64
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.59
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.53
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.45
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.26
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.17
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.99
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.96
PRK13923	170	putative spore coat protein regulator protein YlbO	96.68
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.66
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.19
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.89
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.71
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.61
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.41
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.38
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.24
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.94
PRK13923	170	putative spore coat protein regulator protein YlbO	93.85
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.05
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	92.6
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.7
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.42
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.36
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	90.71
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.1
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.09
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	86.82
KOG4167	907	consensus Predicted DNA-binding protein, contains	86.43
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	83.34
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	82.42

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.1e-33  Score=264.58  Aligned_cols=108  Identities=44%  Similarity=0.881  Sum_probs=104.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHH
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAV  135 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~  135 (369)
                      .+||+||+|||.+|+++|++||+++|..||+.++ +|++++||+||.|||+|+++++.||+|||++|++||.+||++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            4579999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhhhhhh
Q 017566          136 ISRLLPGRTDNAIKNHWNSTLRRRGVELR  164 (369)
Q Consensus       136 IA~~l~gRT~~qck~Rw~~~l~rk~~~~~  164 (369)
                      ||++|||||+++|||+|+..++||+...+
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999987765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.98  E-value=5.1e-32  Score=253.78  Aligned_cols=111  Identities=41%  Similarity=0.801  Sum_probs=105.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc-cCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcH
Q 017566           55 RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI-AGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKW  133 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l-pgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W  133 (369)
                      ...++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKW  100 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRW  100 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccH
Confidence            56778999999999999999999988999999988 59999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017566          134 AVISRLLPGRTDNAIKNHWNSTLRRRGVELRR  165 (369)
Q Consensus       134 ~~IA~~l~gRT~~qck~Rw~~~l~rk~~~~~~  165 (369)
                      +.||++|+|||+++|||||+.++++++...+.
T Consensus       101 s~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i  132 (249)
T PLN03212        101 SLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI  132 (249)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCC
Confidence            99999999999999999999999998766544

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=3e-30  Score=257.59  Aligned_cols=112  Identities=45%  Similarity=0.827  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCc
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK  132 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~  132 (369)
                      ..+.+||+||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|+++|++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999999999999885 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017566          133 WAVISRLLPGRTDNAIKNHWNSTLRRRGVELRR  165 (369)
Q Consensus       133 W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~~~~  165 (369)
                      |+.||++|+|||+++||+||+.+++|+++..+.
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I  121 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI  121 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999998765443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=2.2e-20  Score=192.37  Aligned_cols=118  Identities=27%  Similarity=0.462  Sum_probs=109.4

Q ss_pred             CCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCCh
Q 017566           37 RSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD  116 (369)
Q Consensus        37 ~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~  116 (369)
                      =-|++..+.++||++.+.|+.++|+||++||.+|+.+|++||..+|.+|-..+|||+..|||+||.|.|+...+++.||-
T Consensus       338 mpgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l  417 (939)
T KOG0049|consen  338 MPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTL  417 (939)
T ss_pred             cCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceee
Confidence            34778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHH---HHHHHHH
Q 017566          117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNA---IKNHWNS  154 (369)
Q Consensus       117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~q---ck~Rw~~  154 (369)
                      .||++|+.+|++||. +|.+||.+||+||..|   ||.|+..
T Consensus       418 ~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~  459 (939)
T KOG0049|consen  418 VEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA  459 (939)
T ss_pred             cchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHH
Confidence            999999999999996 4999999999999954   4444443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=6e-18  Score=174.60  Aligned_cols=134  Identities=26%  Similarity=0.412  Sum_probs=109.4

Q ss_pred             cCCCCCCCCCCC-CCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccC-CCcccccc------
Q 017566           28 DADGGADRGRSG-DDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAG-RSGKSCRL------   99 (369)
Q Consensus        28 d~d~~~~~~~sg-~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpg-Rt~~qcr~------   99 (369)
                      |+...+...--| +..+.+...|.....|+.+|..|++|||++|..+-..++..+|.+||..++. |+..||-.      
T Consensus       221 DW~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~  300 (939)
T KOG0049|consen  221 DWTAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEV  300 (939)
T ss_pred             CHHHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            444444444333 3447788999999999999999999999999888877766666666665543 55555544      


Q ss_pred             ------------------------------------------------ccccccCccccCCCCChHHHHHHHHHHHHhCC
Q 017566          100 ------------------------------------------------RWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGN  131 (369)
Q Consensus       100 ------------------------------------------------Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~  131 (369)
                                                                      ||...|+|.+++|+||.+||.+|+.+|.+||.
T Consensus       301 ~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~  380 (939)
T KOG0049|consen  301 SQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA  380 (939)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCc
Confidence                                                            88889999999999999999999999999997


Q ss_pred             c-HHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          132 K-WAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       132 ~-W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      + |.+|-..+|||++.|||.||.+.|.+.++
T Consensus       381 kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  381 KDWAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             cchhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            6 99999999999999999999999877643

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.63  E-value=2.9e-16  Score=117.74  Aligned_cols=60  Identities=47%  Similarity=0.935  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHH
Q 017566           62 WSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQII  122 (369)
Q Consensus        62 WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~L  122 (369)
                      ||+|||.+|+++|..|| .+|..||+.|+.|+..||+.||+++|.+.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5899999999669999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.56  E-value=3.8e-15  Score=153.61  Aligned_cols=109  Identities=29%  Similarity=0.552  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCc
Q 017566           53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK  132 (369)
Q Consensus        53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~  132 (369)
                      .+..++.|.|+..||+.|..+|+.||+.+|..||..+.-|+++||+.||.++++|.+++..|+.|||+.|+.+..++|++
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            34566778999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          133 WAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       133 W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      |+.||..+++||..+|.+||...+..-..
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988876543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.4e-15  Score=152.50  Aligned_cols=101  Identities=30%  Similarity=0.625  Sum_probs=96.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHH
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVIS  137 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA  137 (369)
                      +.|.|+.-||+.|..+|.+||...|.+|++.++-++++||+.||..+|||.+++..|+.|||++||.+.+.+...|..|+
T Consensus         6 kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtIa   85 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTIA   85 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhh
Q 017566          138 RLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       138 ~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      ..| |||.+||-.||++++-..
T Consensus        86 ~i~-gr~~~qc~eRy~~ll~~~  106 (617)
T KOG0050|consen   86 DIM-GRTSQQCLERYNNLLDVY  106 (617)
T ss_pred             HHh-hhhHHHHHHHHHHHHHHH
Confidence            999 999999999999988544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.41  E-value=2.7e-13  Score=97.66  Aligned_cols=46  Identities=33%  Similarity=0.680  Sum_probs=42.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCCHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNK-WAVISRLLP-GRTDNAIKNHWNSTL  156 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~-W~~IA~~l~-gRT~~qck~Rw~~~l  156 (369)
                      |++||+|||++|++++.+||.+ |..||..|+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999999 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.40  E-value=8.4e-14  Score=100.35  Aligned_cols=47  Identities=47%  Similarity=0.941  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCcccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~Rw~~~L  105 (369)
                      |++||+|||++|+++|.+||.++|..||..|+ +||..||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            57899999999999999999877999999999 999999999998865

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.39  E-value=4.2e-13  Score=139.91  Aligned_cols=106  Identities=25%  Similarity=0.563  Sum_probs=94.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccc--cCCCCChHHHHHHHHHHH-------H
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAV--KRKPFTDEEDQIIVAAHA-------V  128 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~--kr~~WT~EED~~Ll~lv~-------~  128 (369)
                      .+|.||+||++.|..+|.++| ..|..|++.| ||.+..|++||+++..++-  +++.||.||.++|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999 5799999999 8999999999999999885  899999999999999995       3


Q ss_pred             h-------C------------CcHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017566          129 H-------G------------NKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRR  165 (369)
Q Consensus       129 ~-------G------------~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~~~~  165 (369)
                      +       |            =.|..|+..+.+|+..|||.+|+.++.+.......
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~  516 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQ  516 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccc
Confidence            3       1            14999999999999999999999999887555443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.23  E-value=9.1e-12  Score=93.30  Aligned_cols=45  Identities=33%  Similarity=0.634  Sum_probs=39.2

Q ss_pred             CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          114 FTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       114 WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      ||+|||++|+++|.+||++|..||++|+.||+.+|++||+.+|+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999669999999999996654

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.21  E-value=2.8e-12  Score=121.12  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=64.8

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCC
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRK  112 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~  112 (369)
                      ++...+|..||.+.+.|..++++||+|||++|++++..|| .+|..||+.|||||..||+.||+.+|...+.+.
T Consensus        58 gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212         58 LRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             CCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            4555688899999999999999999999999999999999 579999999999999999999998776544433

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=2.6e-11  Score=85.07  Aligned_cols=47  Identities=34%  Similarity=0.756  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 899999999999999999999998764

>PLN03091 hypothetical protein; Provisional

Probab=99.20  E-value=3.8e-12  Score=128.36  Aligned_cols=95  Identities=19%  Similarity=0.221  Sum_probs=73.5

Q ss_pred             hhHhHhHhhhhhhcCCCceeccCCCCCCCCCCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 017566            7 TEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIA   86 (369)
Q Consensus         7 ~e~e~~ka~~~~ee~~d~~~~d~d~~~~~~~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA   86 (369)
                      .|++.|+..+..  .|..-|..+....   ..++...+|..||.+++.+.+++++||+|||++|++++.+||. +|.+||
T Consensus        20 EEDe~L~~~V~k--yG~~nWs~IAk~~---g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIA   93 (459)
T PLN03091         20 EEDEKLLRHITK--YGHGCWSSVPKQA---GLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIA   93 (459)
T ss_pred             HHHHHHHHHHHH--hCcCCHHHHhhhh---ccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHH
Confidence            455666655533  3333344333222   2345555888999999999999999999999999999999995 799999


Q ss_pred             hhccCCCccccccccccccCc
Q 017566           87 RGIAGRSGKSCRLRWCNQLDP  107 (369)
Q Consensus        87 ~~lpgRt~~qcr~Rw~~~L~p  107 (369)
                      +.|+|||..+|+.||+..|..
T Consensus        94 k~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         94 AQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             HhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999976654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.09  E-value=2e-10  Score=79.36  Aligned_cols=44  Identities=39%  Similarity=0.823  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHH
Q 017566          113 PFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTL  156 (369)
Q Consensus       113 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l  156 (369)
                      +||++||.+|+.++.+|| .+|..||+.|++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            699999999999999999 89999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.09  E-value=8.1e-11  Score=82.55  Aligned_cols=48  Identities=48%  Similarity=0.998  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ++.||++||.+|+.++..||..+|..||..|++||..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            368999999999999999997789999999999999999999987663

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.05  E-value=2.5e-10  Score=119.41  Aligned_cols=104  Identities=24%  Similarity=0.368  Sum_probs=89.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC---------------C--------hHHHHhhccCCCccccccccccccCccc-c
Q 017566           55 RSRVKGPWSPEQDAVLSELVSKFGAR---------------N--------WSLIARGIAGRSGKSCRLRWCNQLDPAV-K  110 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L~~lV~~~g~~---------------n--------W~~IA~~lpgRt~~qcr~Rw~~~L~p~~-k  110 (369)
                      ....-+.|+.+||+.|.+.|..|-..               .        |+.|...||-|+...++.+-++...|.- +
T Consensus       304 ~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~  383 (607)
T KOG0051|consen  304 DEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENK  383 (607)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccc
Confidence            34556889999999999999988210               1        7889999999999998885555555555 9


Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      +|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+-.
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            999999999999999999999999999999 999999999999987654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.00  E-value=2.4e-10  Score=108.59  Aligned_cols=92  Identities=21%  Similarity=0.274  Sum_probs=73.5

Q ss_pred             hHhHhHhhhhhhcCCCceeccCCCCCCCCCCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHh
Q 017566            8 EIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR   87 (369)
Q Consensus         8 e~e~~ka~~~~ee~~d~~~~d~d~~~~~~~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~   87 (369)
                      |++.+..-+  ..-|..-|.........+|.|+   +|.-||..+++|.+++|.||+|||.+|++|.+.+| ..|..||+
T Consensus        16 ED~~L~~~V--~~~G~~~W~~i~k~~gl~R~GK---SCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~   89 (238)
T KOG0048|consen   16 EDLTQIRSI--KSFGKHNGTALPKLAGLRRCGK---SCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAG   89 (238)
T ss_pred             HHHHHHHHH--HHhCCCCcchhhhhcCCCccch---HHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHh
Confidence            344444433  3456666766666666677777   66679999999999999999999999999999999 46999999


Q ss_pred             hccCCCcccccccccccc
Q 017566           88 GIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        88 ~lpgRt~~qcr~Rw~~~L  105 (369)
                      +|||||...++.+|.-.|
T Consensus        90 ~LPGRTDNeIKN~Wnt~l  107 (238)
T KOG0048|consen   90 RLPGRTDNEVKNHWNTHL  107 (238)
T ss_pred             hCCCcCHHHHHHHHHHHH
Confidence            999999988877775444

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.96  E-value=4.8e-10  Score=77.45  Aligned_cols=44  Identities=48%  Similarity=0.996  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      +||++||..|+.++..||..+|..||+.|++|+..+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999977899999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.24  E-value=4.6e-07  Score=94.31  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=97.4

Q ss_pred             ccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHH
Q 017566           44 VAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIV  123 (369)
Q Consensus        44 ~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll  123 (369)
                      ++..+|.....+.++++.|+.|||+.|+.+-..+|. .|..||..+++|+..||.+||.+.+.+... .+|+..+....+
T Consensus        57 q~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f  134 (512)
T COG5147          57 QSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEF  134 (512)
T ss_pred             cccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhc
Confidence            556699999999999999999999999999999997 599999999999999999999999987766 789999988888


Q ss_pred             HHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          124 AAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       124 ~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      ..+..|+..|+.+....-.+-...|.+++.++..
T Consensus       135 ~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         135 DKIDPFNENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             cccCchhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            8888888888888776666777777777766554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.16  E-value=4.7e-06  Score=62.64  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhCC-cH---HHHHhhCC-CC-CHHHHHHHHHHHHHh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGN-KW---AVISRLLP-GR-TDNAIKNHWNSTLRR  158 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~-~W---~~IA~~l~-gR-T~~qck~Rw~~~l~r  158 (369)
                      .+-.||+||+.++++++..||. .|   ..|+..+. .| |..||+.|++.+..+
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            3568999999999999999997 89   99999874 45 999999999988754

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.80  E-value=2e-05  Score=80.01  Aligned_cols=53  Identities=19%  Similarity=0.479  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      .-.+....||.+|+-+|+++++.||.+||..||.+|+.|+..+|+++|.+++.
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            33445578999999999999999999999999999999999999999998653

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=9.8e-07  Score=90.67  Aligned_cols=92  Identities=26%  Similarity=0.293  Sum_probs=76.2

Q ss_pred             hhhHhHhHhhhhhhcCCCceeccCCCCCCCCCCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHH
Q 017566            6 ETEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLI   85 (369)
Q Consensus         6 e~e~e~~ka~~~~ee~~d~~~~d~d~~~~~~~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~I   85 (369)
                      -+|+|.+||.++.  .|...|......-..    ..+.+|..+|-....+.+++-.|+.|||++|+-+.....+ .|..|
T Consensus        12 ntEdeilkaav~k--yg~nqws~i~sll~~----kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~-qwrtI   84 (617)
T KOG0050|consen   12 NTEDEVLKAAVMK--YGKNQWSRIASLLNR----KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT-QWRTI   84 (617)
T ss_pred             ccHHHHHHHHHHH--cchHHHHHHHHHHhh----cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC-ccchH
Confidence            4788999999977  666666655543321    2334788899999999999999999999999999888885 69999


Q ss_pred             HhhccCCCcccccccccccc
Q 017566           86 ARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        86 A~~lpgRt~~qcr~Rw~~~L  105 (369)
                      |..| ||++.||.+||.+.|
T Consensus        85 a~i~-gr~~~qc~eRy~~ll  103 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLL  103 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHH
Confidence            9988 899999999998875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.64  E-value=4.4e-05  Score=57.40  Aligned_cols=47  Identities=13%  Similarity=0.251  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCh---HHHHhhcc-CC-Ccccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNW---SLIARGIA-GR-SGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW---~~IA~~lp-gR-t~~qcr~Rw~~~L  105 (369)
                      +-.||+||..+++.+|..+|.++|   ..|++.|. .| |..||+-++.+|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999998799   99999875 45 9999999887664

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.59  E-value=8.7e-05  Score=66.54  Aligned_cols=53  Identities=28%  Similarity=0.493  Sum_probs=46.6

Q ss_pred             cCCCCChHHHHHHHHHHHHh---CCc----HHHHHhhCCCCCHHHHHHHHHHHHHhhhhhh
Q 017566          110 KRKPFTDEEDQIIVAAHAVH---GNK----WAVISRLLPGRTDNAIKNHWNSTLRRRGVEL  163 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~---G~~----W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~~  163 (369)
                      +...||.|||.+|.+.|.+|   |..    ...+++.| +||+.+|.-|||.++|+++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            45789999999999999887   432    89999999 9999999999999999987663

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.53  E-value=0.00028  Score=65.61  Aligned_cols=99  Identities=21%  Similarity=0.448  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHhhcc---CCCcccccccccccc-Cccc--------------------cCCCCCh
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIARGIA---GRSGKSCRLRWCNQL-DPAV--------------------KRKPFTD  116 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~~lp---gRt~~qcr~Rw~~~L-~p~~--------------------kr~~WT~  116 (369)
                      +|++++|-+|+.+|..-.  +-..|+..+.   .-|..-+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999999876  5788887664   566677888998754 3332                    4578999


Q ss_pred             HHHHHHHHHHHHhCCc---HHHHHh-----hCCCCCHHHHHHHHHHHHHhhhh
Q 017566          117 EEDQIIVAAHAVHGNK---WAVISR-----LLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       117 EED~~Ll~lv~~~G~~---W~~IA~-----~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      +|+++|........+.   +.+|=.     +-++||+.++.+||+.+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            9999999987666543   766633     45789999999999976665544

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.45  E-value=0.00022  Score=72.55  Aligned_cols=52  Identities=17%  Similarity=0.380  Sum_probs=46.7

Q ss_pred             cccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          108 AVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       108 ~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      .+-...||.+|+-+||+++..|| .+|..||.+++.||..+|+.||.+++-..
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcC
Confidence            34567899999999999999999 56999999999999999999999887654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.26  E-value=0.00039  Score=53.65  Aligned_cols=50  Identities=30%  Similarity=0.535  Sum_probs=33.1

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-HHHHHhhCC-CCCHHHHHHHHHHHHHhhh
Q 017566          111 RKPFTDEEDQIIVAAHAVH--------GNK-WAVISRLLP-GRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~--------G~~-W~~IA~~l~-gRT~~qck~Rw~~~l~rk~  160 (369)
                      |.+||.|||..|++.|+.+        |++ |..++..-+ .+|-...|+||.+.|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            5689999999999999654        233 999999766 8999999999998887763

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.17  E-value=0.00036  Score=71.50  Aligned_cols=45  Identities=16%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      ..+||.+|..+|++++..||..|.+||+++++||..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999753

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.99  E-value=0.00042  Score=71.06  Aligned_cols=46  Identities=22%  Similarity=0.522  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      +...||.+|..+|++.|+.|| .+|.+||+++++|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            556899999999999999999 5799999999999999999998764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.0007  Score=53.97  Aligned_cols=48  Identities=25%  Similarity=0.529  Sum_probs=33.7

Q ss_pred             CCCCChHHHHHHHHHHHH------hC--C------cHHHHHhhC----CCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAV------HG--N------KWAVISRLL----PGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~------~G--~------~W~~IA~~l----~gRT~~qck~Rw~~~l~r  158 (369)
                      |..||.+|...||.++..      ++  .      -|..||..|    ..||+.||+++|.++.++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~   66 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK   66 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999876      21  1      399999976    369999999999985544

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.96  E-value=0.00095  Score=69.95  Aligned_cols=45  Identities=13%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHH
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNS  154 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~  154 (369)
                      .+..||.+|.-+|++++..||-.|.+||.++.+||..||-.||..
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999965

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.68  E-value=0.002  Score=58.57  Aligned_cols=52  Identities=25%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCc-------HHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNK-------WAVISRLLPGRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~-------W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      +...||.|+|.+|.+.|..|+..       ...++..| +||+.+|..||+.++++++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            46789999999999999888742       67778888 999999999999999987654

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.66  E-value=0.0012  Score=69.33  Aligned_cols=48  Identities=19%  Similarity=0.564  Sum_probs=43.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccc
Q 017566           55 RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN  103 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~  103 (369)
                      ....++.||.+|.-+|+++|+.|| .+|.+||.++.+||..||..++.+
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence            344567899999999999999999 589999999999999999999876

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.19  E-value=0.0032  Score=48.58  Aligned_cols=49  Identities=24%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC------CC--hHHHHhhcc-CCCccccccccccccCcc
Q 017566           60 GPWSPEQDAVLSELVSKFGA------RN--WSLIARGIA-GRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~------~n--W~~IA~~lp-gRt~~qcr~Rw~~~L~p~  108 (369)
                      -+||.+||++|+..|..+..      +|  |..+++.-+ .+|-.+-|+||.+.|.+.
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            57999999999999976631      23  999999877 889999999999988654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.89  E-value=0.0047  Score=55.54  Aligned_cols=48  Identities=25%  Similarity=0.647  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CCC---ChHHHHhhccCCCccccccccccccC
Q 017566           58 VKGPWSPEQDAVLSELVSKF---GAR---NWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~---g~~---nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ++..||.|||.+|.+.|-+|   |..   -+..|++.| +||+..|.-||+.++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            45689999999999999998   211   288888888 8999999999988774

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.71  E-value=0.0032  Score=50.12  Aligned_cols=45  Identities=31%  Similarity=0.664  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----ChHHHHhhcc----CCCccccccccccc
Q 017566           60 GPWSPEQDAVLSELVSK--F----G--AR-----NWSLIARGIA----GRSGKSCRLRWCNQ  104 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~--~----g--~~-----nW~~IA~~lp----gRt~~qcr~Rw~~~  104 (369)
                      ..||.+|...|+.++..  +    +  ..     -|..||..|.    .||+.||+.+|.+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            46999999999999988  2    1  11     2999999874    79999999999864

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.61  E-value=0.04  Score=62.70  Aligned_cols=99  Identities=17%  Similarity=0.331  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccc-------ccccc-----------------------------
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRL-------RWCNQ-----------------------------  104 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~-------Rw~~~-----------------------------  104 (369)
                      .||.-+=..++.+..+||..+-..||..|.|+|...++.       ||...                             
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999888999999998898877764       21110                             


Q ss_pred             -------------c-CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhh------------CCCCCHHHHHHHHHHHHH
Q 017566          105 -------------L-DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRL------------LPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       105 -------------L-~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~------------l~gRT~~qck~Rw~~~l~  157 (369)
                                   + .+..++..||+|||+.|+-.+.+|| .+|..|-..            |..||+..+..|-..+++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                         0 1223455799999999999999999 459999432            257999999999998876


Q ss_pred             hh
Q 017566          158 RR  159 (369)
Q Consensus       158 rk  159 (369)
                      --
T Consensus       986 ~~  987 (1033)
T PLN03142        986 LI  987 (1033)
T ss_pred             HH
Confidence            53

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.41  E-value=0.019  Score=56.82  Aligned_cols=47  Identities=17%  Similarity=0.436  Sum_probs=42.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      -..|+..|+-+|+++..-.| .+|..||.+++.|+..+||.||.++..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 569999999988999999999987664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.38  E-value=0.036  Score=43.27  Aligned_cols=48  Identities=25%  Similarity=0.517  Sum_probs=39.7

Q ss_pred             CCCCChHHHHHHHHHHHHh-----C--C----------cHHHHHhhC-----CCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVH-----G--N----------KWAVISRLL-----PGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~-----G--~----------~W~~IA~~l-----~gRT~~qck~Rw~~~l~r  158 (369)
                      ...||.+|...|++++.+|     |  .          -|..|+..|     +.||..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999887     3  0          299999866     359999999999987654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.24  E-value=0.014  Score=57.77  Aligned_cols=48  Identities=23%  Similarity=0.480  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      --.|+.+|+-+|++...-.|-+||..||.+|+.|+...|+.+|.++++
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            356999999999999999999999999999999999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.94  E-value=0.025  Score=44.21  Aligned_cols=47  Identities=34%  Similarity=0.474  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----C-----------ChHHHHhhc-----cCCCcccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGA-----R-----------NWSLIARGI-----AGRSGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~-----~-----------nW~~IA~~l-----pgRt~~qcr~Rw~~~L  105 (369)
                      +..||++|...|+++|.+|..     .           -|..|+..|     +.|+..|++.+|.+..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999831     1           199999877     2699999999998754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.85  E-value=0.025  Score=51.46  Aligned_cols=47  Identities=21%  Similarity=0.584  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC------hHHHHhhccCCCcccccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARN------WSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~n------W~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      ++..||.|+|.+|.+.|..|+..-      ...++..| +||+.+|..||+.++
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~v   56 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVV   56 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHH
Confidence            467899999999999999996322      56666666 899999999996555

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.05  E-value=0.17  Score=43.53  Aligned_cols=51  Identities=22%  Similarity=0.442  Sum_probs=40.0

Q ss_pred             cccCCCCChHHHHHHHHHHHHhCC----cHHHHHhhC------------CCCCHHHHHHHHHHHHHh
Q 017566          108 AVKRKPFTDEEDQIIVAAHAVHGN----KWAVISRLL------------PGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       108 ~~kr~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l------------~gRT~~qck~Rw~~~l~r  158 (369)
                      ..++..||++||.-|+-.+.+||-    .|..|-..+            ..||+..+..|-..+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556789999999999999999997    598886533            469999999999887753

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=92.60  E-value=0.19  Score=50.98  Aligned_cols=48  Identities=21%  Similarity=0.363  Sum_probs=44.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      .+||.+|-+++.++...+|..++.||.++|.|...|||.+|.+--++.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n  413 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN  413 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence            489999999999999999999999999999999999999997655543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.70  E-value=0.24  Score=49.48  Aligned_cols=49  Identities=14%  Similarity=0.302  Sum_probs=39.3

Q ss_pred             CCCCChHHHHHHHHHHHHh----------CCcHHHHHhhC----CCCCHHHHHHHHHHHHHhh
Q 017566          111 RKPFTDEEDQIIVAAHAVH----------GNKWAVISRLL----PGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~----------G~~W~~IA~~l----~gRT~~qck~Rw~~~l~rk  159 (369)
                      ...|+.+|-..||++..+.          +.-|..||+.+    .-||+.+|+++|.++.++-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            4789999999999987542          34499999944    3499999999999976654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.42  E-value=0.51  Score=37.81  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=37.2

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------cHHHHHhhCC-----CCCHHHHHHHHHHHHHhhhhhhh
Q 017566          113 PFTDEEDQIIVAAHAVH---GN----------KWAVISRLLP-----GRTDNAIKNHWNSTLRRRGVELR  164 (369)
Q Consensus       113 ~WT~EED~~Ll~lv~~~---G~----------~W~~IA~~l~-----gRT~~qck~Rw~~~l~rk~~~~~  164 (369)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..|..||++||.. ||+......
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~-lk~~y~~~~   69 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT-LKKDYRIWK   69 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH-HHHHHHHHH
Confidence            49999999999998543   21          2999998662     3588999999986 455544433

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.36  E-value=0.17  Score=51.39  Aligned_cols=79  Identities=16%  Similarity=0.286  Sum_probs=58.3

Q ss_pred             ChHHHHhhccCCCccccccccccccCcc-------------------------ccCCCCChHHHHHHHHHHHHhCCcHHH
Q 017566           81 NWSLIARGIAGRSGKSCRLRWCNQLDPA-------------------------VKRKPFTDEEDQIIVAAHAVHGNKWAV  135 (369)
Q Consensus        81 nW~~IA~~lpgRt~~qcr~Rw~~~L~p~-------------------------~kr~~WT~EED~~Ll~lv~~~G~~W~~  135 (369)
                      .|..+.=..+-|...-.-.+|.+.-++.                         ++-..||.+|-+-|+.|++.|.-+|-.
T Consensus        75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V  154 (445)
T KOG2656|consen   75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV  154 (445)
T ss_pred             CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence            4666555555565555556666552221                         123469999999999999999999999


Q ss_pred             HHhh-----CCC-CCHHHHHHHHHHHHHhh
Q 017566          136 ISRL-----LPG-RTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       136 IA~~-----l~g-RT~~qck~Rw~~~l~rk  159 (369)
                      ||..     ++. ||-.++|.||+...++-
T Consensus       155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l  184 (445)
T KOG2656|consen  155 IADRYDNQQYKKSRTVEDLKERYYSVCRKL  184 (445)
T ss_pred             EeeccchhhccccccHHHHHHHHHHHHHHH
Confidence            9986     555 99999999999876653

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=90.71  E-value=0.71  Score=33.18  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          116 DEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       116 ~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      +++++.++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4678888999999999999999999 9999999999877554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.10  E-value=1  Score=46.73  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      ...||.||--+|-+++..||++..+|-..||.|+-..+...|+...+.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999999998766654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.09  E-value=0.29  Score=49.59  Aligned_cols=62  Identities=23%  Similarity=0.429  Sum_probs=49.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc--cCccc------cCCCCChHHHHH
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ--LDPAV------KRKPFTDEEDQI  121 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~--L~p~~------kr~~WT~EED~~  121 (369)
                      --+||.+|-.++.+++..+|. ++..|+.++|.|..+|++..|.+-  .+|..      .+.|+..+|--.
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k  434 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNK  434 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhh
Confidence            357999999999999999995 799999999999999999998763  22321      245777777653

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=86.82  E-value=0.84  Score=36.86  Aligned_cols=31  Identities=35%  Similarity=0.666  Sum_probs=19.4

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCChHHHHhh
Q 017566           55 RSRVKGPWSPEQDAVL--------SELVSKFGARNWSLIARG   88 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L--------~~lV~~~g~~nW~~IA~~   88 (369)
                      |....|-||+++|+.|        .+|+++||   +..|++.
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5567899999999999        56777888   6777654

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=86.43  E-value=0.47  Score=51.70  Aligned_cols=42  Identities=7%  Similarity=0.432  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWC  102 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~  102 (369)
                      ..||+.|-.++.+++..|. .++..|+++|+++|++||-+-|+
T Consensus       620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYY  661 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYY  661 (907)
T ss_pred             ccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHH
Confidence            5799999999999999999 57999999999999999988664

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=83.34  E-value=1.5  Score=37.73  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=28.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHhhc
Q 017566           56 SRVKGPWSPEQDAVLSELVSKFGA---RNWSLIARGI   89 (369)
Q Consensus        56 ~~~kg~WT~EED~~L~~lV~~~g~---~nW~~IA~~l   89 (369)
                      ...+..||.+||.-|+-++.+||.   +.|..|-..|
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            344567999999999999999998   7899998766

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=82.42  E-value=3  Score=29.18  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHhCCc-HHHHHhhCCCCCHHHHHHHHHHH
Q 017566          117 EEDQIIVAAHAVHGNK-WAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       117 EED~~Ll~lv~~~G~~-W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      +=|.+|+.+...-|.. |..||+.+ |=|...|..|++.+
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL   41 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL   41 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence            4478899999888865 99999999 99999999999764

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-32
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-32
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-31
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-31
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		8e-31
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		9e-23
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		7e-17
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		5e-16
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-14
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-10
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-10
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-10
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		6e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/102 (58%), Positives = 80/102 (78%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           VKGPW+ E+D  + ELV K+G + W+LIA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 6   VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH V GN+WA I++LLPGRTDNA+KNHWNST++R+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 79/102 (77%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 79/102 (77%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 79/102 (77%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 76/101 (75%)
Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
           KGPW+ E+D  + E V K+G + WS IA+ + GR GK CR RW N L+P VK+  +T+EE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           D+II  AH   GN+WA I++LLPGRTDNA+KNHWNST+RR+
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGP++  +D ++ E V + G +NW  I   +  RS K CR RW N LDPAV +  +T E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+ I   +   G+KW+VI++L+PGRTDNAIKN WNS++ +R
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
           K  ++PE+D +L   V++ G+ +W +IA     R+ + CR RW N L P++   P+T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVELRRTM 167
           D ++V     +G +WA+I++  PGRTD  IKN W +   + G+   + M
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQM 118

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 63/102 (61%)
Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
           K  ++ E+D  L +LV ++GA++W  I++ +  R+ + CR RW N ++PA++  P++ EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRG 160
           D ++   +A +G KW  IS+ L  R+DN I+N W    R R 
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 109 VKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           VK+  +T+EED+I+  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 109 VKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           VK+  +T+EED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           +KGPW+ E+D  + ELV K+G + WS+IA+ + GR GK CR RW N L+P
Sbjct: 2   IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           +KGPW+ E+D  L +LV K+G + WS+IA+ + GR GK CR RW N L+P
Sbjct: 2   IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P
Sbjct: 2   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 62  WSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFT 115
           W   +D +L   V K+G   WS IA  +  +S K C+ RW   LDP++K+  ++
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-68
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	4e-67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-08
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	9e-64
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-63
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-37
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-30
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-08
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-27
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-24
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	8e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-10
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-06
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	4e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	7e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  209 bits (534), Expect = 5e-68
 Identities = 58/102 (56%), Positives = 76/102 (74%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
            KGPW+ E+D  + E V K+G + WS IA+ + GR GK CR RW N L+P VK+  +T+E
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 85

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+II  AH   GN+WA I++LLPGRTDNA+KNHWNST+RR+
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  207 bits (529), Expect = 1e-67
 Identities = 59/103 (57%), Positives = 79/103 (76%)

Query: 57  RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116
            +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T+
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           EED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  207 bits (528), Expect = 4e-67
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
           +KGP++  +D ++ E V + G +NW  I   +  RS K CR RW N LDPAV +  +T E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 118 EDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           ED+ I   +   G+KW+VI++L+PGRTDNAIKN WNS++ +R
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
           K  W+PE+D  +     K G++ WS+IA+ I GR+  + + RW + +     ++  T+  
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSI----SKRISTNSN 108

Query: 119 DQIIVAAHAVHGNKWAVISRLL 140
            + I+        K A + + L
Sbjct: 109 HKEILLPDRSKKRKAADVPKKL 130

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  198 bits (505), Expect = 9e-64
 Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 51  KRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK 110
           + + ++  K  ++PE+D +L   V++ G  +W +IA     R+ + CR RW N L P++ 
Sbjct: 3   QVNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSIS 61

Query: 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162
             P+T EED ++V     +G +WA+I++  PGRTD  IKN W +   + G+ 
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  196 bits (502), Expect = 2e-63
 Identities = 37/101 (36%), Positives = 63/101 (62%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
           K  ++ E+D  L +LV ++GA++W  I++ +  R+ + CR RW N ++PA++  P++ EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           D ++   +A +G KW  IS+ L  R+DN I+N W    R R
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  196 bits (500), Expect = 1e-62
 Identities = 59/104 (56%), Positives = 79/104 (75%)

Query: 56  SRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFT 115
             +KGPW+ E+D  + +LV K+G + WS+IA+ + GR GK CR RW N L+P VK+  +T
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 116 DEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
           +EED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+RR+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  132 bits (334), Expect = 1e-37
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDE 117
            K  W+ E+D  L +LV + G  +W +IA  +  R+   C+ RW   L+P + + P+T E
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 118 EDQIIVAAHAVHGNK-WAVISRLLPGRTDNAIKNHWNSTLR 157
           EDQ ++     +G K W+VI++ L GR     +  W++ L 
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 109 VKRKPFTDEEDQIIVAAHAVHGNK-WAVISRLLPGRTDNAIKNHWNSTLR 157
           + +  +T EED+ +      +G   W VI+  LP RTD   ++ W   L 
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 53

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  109 bits (274), Expect = 4e-30
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 53  SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRK 112
           SG S   G W   +D +L   V K+G   WS IA  +  +S K C+ RW   LDP++K+ 
Sbjct: 3   SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62

Query: 113 PFTDEE 118
            ++   
Sbjct: 63  EWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 107 PAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR 157
            + K   + + ED+I+ AA   +G N+W+ I+ LL  ++    K  W   L 
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  100 bits (252), Expect = 3e-27
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           +KGPW+ E+D  L +LV K+G + WS+IA+ + GR GK CR RW N L+P
Sbjct: 2   IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 109 VKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRT 144
           + + P+T EEDQ ++     +G  +W+VI++ L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
            K  W+ E+D  L +LV + G  +W +IA  +  R+   C+ RW   L+P
Sbjct: 2   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 109 VKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR 157
           + +  +T EED+ +      +G + W VI+  LP RTD   ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 93.1 bits (232), Expect = 3e-24
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 53  SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           S  S  K  W+ E+D  L  LV +FG ++W  +A     R+ + C+ RW   L  
Sbjct: 2   SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 53  SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRK 112
           SG S  K  WS E++  L  L        W  IA  I GR+   C   +   LD A +R 
Sbjct: 3   SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 106 DPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTL 156
             + K+  ++ EE++ ++    +   +W  I+ ++ GRT      H+   L
Sbjct: 4   GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLL 53

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 50  SKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCN 103
           +    R+R +  W  E+D  L   V K+G  NWS I        R+    + RW  
Sbjct: 1   TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRRGVE 162
           KR+ +  EED+ + +    +G   W+ I        RT   +K+ W +  + + + 
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCN 103
           +  W  E+D  L   V K+G  NWS I        R+    + RW  
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRR 159
           KR+ +  EED+ + +    +G   W+ I        RT   +K+ W +  + +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 56  SRVKGPWSPEQDAVLSELVSK-----FGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK 110
           S  K  ++ E+D  + ++V K          +  I+  +   +G S R R+   L   ++
Sbjct: 5   SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64

Query: 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNS 154
                D+  +++       GN               +IK  +++
Sbjct: 65  YVYEVDKFGKLV---RDDDGNLIKT------KVLPPSIKRKFSA 99

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 107 PAVKRKPFTDEEDQIIVAAHAVHGNK------WAVISRLLPGRTDNAIKNHWNSTLRRR 159
           P+  +  FTDEED+ I+     +  +      +  IS  +P  T N+I++ +   L +R
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 50  SKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR--GIAGRSGKSCRLRWCN 103
              +     K  W+ E+   +   V K+G  NW+ I++      R+    + RW  
Sbjct: 2   EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRRGV 161
           K++ +T EE + + A    +G   WA IS+  P   RT   IK+ W  T++R G+
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRLGM 63

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 53  SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD 106
           S  S     W+ +++  L E V   G  NW  +A  +  ++ + C   +     
Sbjct: 2   SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 47  GEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR----GIAGRSGKSCRLRWC 102
           G       + R++ P+S  +   L + V K G   W  +          R+    + +W 
Sbjct: 1   GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 103 N-----QLDPAVKRKPFTDEE-DQIIVAAHAVHGNKWA 134
                 ++ P  +R     +E    ++ AH     +  
Sbjct: 61  TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIAR--GIAGRSGKSCRLRWCN 103
           K  W+ E+   +   V K+G  NW+ I++      R+    + RW  
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRRGV 161
           K++ +T EE + + A    +G   WA IS+  P   RT   IK+ W  T++R G+
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRLGM 54

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 49  GSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR----GIAGRSGKSCRLRWCNQ 104
                G+ R++ P++  +  +L E V   G   W  +       +  R+    + +W   
Sbjct: 21  KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80

Query: 105 LDPA------VKRKPFTDEEDQIIVAAHAVHGNKWA 134
           +  A       +  P   E    ++AA A      +
Sbjct: 81  VHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 103 NQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162
           +     +  + +T+EE          HG  W+ I+R++  +T +  KN + +  +R+ ++
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 55  RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN 103
            +     W+ E+     + + + G RNWS IAR +  ++   C+  + N
Sbjct: 12  ENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRW 101
            G ++PE+   L EL  K G  +W+ I   + GRS  S + R 
Sbjct: 23  VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 105 LDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHW 152
                    +T EE + +      HGN WA I   L GR+ +++K+  
Sbjct: 17  QGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 50  SKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR----GIAGRSGKSCRLRWCN-- 103
                + R++ P+S  +   L E V   G   W  +          R+    + +W    
Sbjct: 8   RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67

Query: 104 ---QLDPAVKRK-PFTDEEDQIIVAAHAVHGNKWA 134
               + P  +R  P   +    ++AAHA    +  
Sbjct: 68  HTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 48  EGSKRSGRSRVKGPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRW 101
              ++      + PW+  Q  +L   + ++       W  IAR +  +S + C  R+
Sbjct: 7   GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 36  GRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGK 95
           G SG    +       +S  +     W+ ++  +L E +  +   +W+ ++  +  R+  
Sbjct: 1   GSSGSSGTL------AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQD 53

Query: 96  SCRLRW 101
            C L +
Sbjct: 54  ECILHF 59

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWN---STLRRRGVELRR 165
               +T EE ++     A  G +W  IS+L+  RT   +K++         + G++   
Sbjct: 8   YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET 66

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCR 98
           SG S     W+ E+  +  + ++KFG R W+ I++ I  R+    +
Sbjct: 2  SSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 53  SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI-AGRSGKSCRLRWCN 103
           SG S     W  +++ +L +     G  NW+ IA  +   R+ + CR  +  
Sbjct: 3   SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 61  PWSPEQDAVLSELVSKFGARNWSLIAR----GIAGRSGKSCRLRWCN-----QLDPAVKR 111
           P+S  +   L E V   G   W  +          R+    + +W        + P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 112 K-PFTDEEDQIIVAAHAVHGNK 132
             P   +    ++AAHA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.84
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.72
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.72
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.7
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.69
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.66
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.58
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.57
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.56
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.51
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.26
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.51
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.49
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.44
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.44
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.38
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.35
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.34
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.32
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.31
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.29
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.9
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.25
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.25
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.2
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.17
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.05
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.96
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.92
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.89
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.89
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.85
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.85
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.71
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.64
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.55
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.49
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.45
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.41
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.35
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.32
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.22
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.21
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.37
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.02
2crg_A	70	Metastasis associated protein MTA3; transcription	97.91
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.81
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.76
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.58
2crg_A	70	Metastasis associated protein MTA3; transcription	97.58
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.48
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.41
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.35
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.1
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.09
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.86
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.63
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.57
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	96.22
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.83
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.99
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.09
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.57
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.41
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	81.58

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=7.4e-35  Score=249.60  Aligned_cols=121  Identities=50%  Similarity=0.879  Sum_probs=103.5

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHH
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE  118 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EE  118 (369)
                      |+...+|..+|...+.+..++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.+++++||+||
T Consensus         7 ~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE   86 (128)
T 1h8a_C            7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE   86 (128)
T ss_dssp             ---------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHH
T ss_pred             CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHH
Confidence            55666888999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      |++|+++|.+||++|+.||++|||||+++|++||+.+++++
T Consensus        87 d~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999998875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=5.9e-34  Score=235.83  Aligned_cols=103  Identities=57%  Similarity=1.096  Sum_probs=98.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHH
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVI  136 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~I  136 (369)
                      .++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            57899999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhh
Q 017566          137 SRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       137 A~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      |++|||||+++|++||+.+++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999876

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=5.8e-34  Score=237.23  Aligned_cols=103  Identities=36%  Similarity=0.702  Sum_probs=99.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHh
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISR  138 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~  138 (369)
                      ||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhhh
Q 017566          139 LLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       139 ~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      +|+|||+++|++||+.++++...
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHH
Confidence            99999999999999998887643

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=7.7e-33  Score=236.85  Aligned_cols=109  Identities=35%  Similarity=0.746  Sum_probs=102.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCc
Q 017566           53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK  132 (369)
Q Consensus        53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~  132 (369)
                      ..+..++|+||+|||++|+++|.+||. +|..||+.|+||+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            356678899999999999999999997 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566          133 WAVISRLLPGRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       133 W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      |+.||++|+|||+++|++||+.++++....
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p  113 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKLGIP  113 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999988876443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=2.6e-33  Score=241.14  Aligned_cols=105  Identities=46%  Similarity=0.839  Sum_probs=101.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHH
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVIS  137 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA  137 (369)
                      .||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            47999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566          138 RLLPGRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       138 ~~l~gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      ++|+|||+++|++||+.+|++++..
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999887544

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.2e-32  Score=243.80  Aligned_cols=121  Identities=50%  Similarity=0.921  Sum_probs=112.7

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHH
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE  118 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EE  118 (369)
                      |+...+|..+|...+.+..++|+||+|||++|+++|.+||..+|..||+.|||||+.||+.||.++|+|.+++++||+||
T Consensus        38 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE  117 (159)
T 1h89_C           38 NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE  117 (159)
T ss_dssp             -----CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHH
T ss_pred             CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHH
Confidence            56666888999999999999999999999999999999998789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      |.+|+++|.+||++|+.||++|||||+++|++||+.+++++
T Consensus       118 d~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999998876

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.6e-29  Score=223.76  Aligned_cols=103  Identities=31%  Similarity=0.660  Sum_probs=61.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCC-cHHH
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAV  135 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~  135 (369)
                      ..+++||+|||++|.++|.+||..+|..||+.||||+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            567899999999999999999988999999999999999999999999999999999999999999999999996 6999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          136 ISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       136 IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      ||.+|+|||+.||++||+++|...
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCcc
Confidence            999999999999999999988654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=8.4e-22  Score=151.97  Aligned_cols=67  Identities=34%  Similarity=0.704  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHH
Q 017566           53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEED  119 (369)
Q Consensus        53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED  119 (369)
                      .++..++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||+++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4567888999999999999999999988999999999999999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.82  E-value=5.1e-21  Score=163.57  Aligned_cols=75  Identities=28%  Similarity=0.633  Sum_probs=51.2

Q ss_pred             HHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566           85 IARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus        85 IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      ||+.|||||+.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|...
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            79999999999999999999999999999999999999999999996 5999999999999999999999988653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=6.8e-19  Score=164.00  Aligned_cols=107  Identities=21%  Similarity=0.323  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHHhhccCCCccccccccccccCcccc------------------
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARN-----WSLIARGIAGRSGKSCRLRWCNQLDPAVK------------------  110 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~n-----W~~IA~~lpgRt~~qcr~Rw~~~L~p~~k------------------  110 (369)
                      .+...+++||+|||++|+++|.+||..+     |..||+.|||||+.|||.||+.+|.+.++                  
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            3456788999999999999999998643     99999999999999999999999999986                  


Q ss_pred             -----------CCCCChHHHHHHHHHHHH-h-------------------------------------------------
Q 017566          111 -----------RKPFTDEEDQIIVAAHAV-H-------------------------------------------------  129 (369)
Q Consensus       111 -----------r~~WT~EED~~Ll~lv~~-~-------------------------------------------------  129 (369)
                                 +..||.+||-.|+..+++ |                                                 
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       789999999999998876 1                                                 


Q ss_pred             ----CC----cHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566          130 ----GN----KWAVISRLLPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       130 ----G~----~W~~IA~~l~gRT~~qck~Rw~~~l~rk~  160 (369)
                          |+    .|..||+.+|+||.+++|+||+.+|+...
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~g  201 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYG  201 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHC
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Confidence                22    69999999999999999999999887763

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=134.15  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             ccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566           96 SCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus        96 qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      ...-||.++|+|.+++++||+|||++|+++|.+||++|+.||++| |||++|||+||+.+
T Consensus         8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            445689999999999999999999999999999999999999999 99999999999863

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.72  E-value=2.6e-18  Score=145.81  Aligned_cols=84  Identities=20%  Similarity=0.355  Sum_probs=78.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCccccccccccccC-----ccccCC-CCChHHHHH
Q 017566           52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQLD-----PAVKRK-PFTDEEDQI  121 (369)
Q Consensus        52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L~-----p~~kr~-~WT~EED~~  121 (369)
                      ..++.+++++||+|||+.|+++|++||.++|..|++.+    ++||..||++||++++.     |.++++ +|+++|+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            34567888999999999999999999988999999985    89999999999999998     999998 999999999


Q ss_pred             HHHHHHHhCCcHHH
Q 017566          122 IVAAHAVHGNKWAV  135 (369)
Q Consensus       122 Ll~lv~~~G~~W~~  135 (369)
                      |+.++..|||+|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999975

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.70  E-value=1.4e-17  Score=141.61  Aligned_cols=80  Identities=20%  Similarity=0.336  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCcccccccccccc-----CccccCCCCChHH-HHHH
Q 017566           53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQL-----DPAVKRKPFTDEE-DQII  122 (369)
Q Consensus        53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L-----~p~~kr~~WT~EE-D~~L  122 (369)
                      .+..+++++||+|||+.|+++|++||.++|..|++.+    ++||..||++||++++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            3556778999999999999999999998999999974    8999999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCc
Q 017566          123 VAAHAVHGNK  132 (369)
Q Consensus       123 l~lv~~~G~~  132 (369)
                      +.++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999985

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.69  E-value=3.1e-17  Score=127.08  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             cCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566          105 LDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       105 L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      ++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.+++++...
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999987544

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=2.2e-17  Score=123.33  Aligned_cols=57  Identities=30%  Similarity=0.651  Sum_probs=53.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcccc
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK  110 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~k  110 (369)
                      .+..++++||+|||++|+++|.+||..+|..||+.|+|||..||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            467889999999999999999999987999999999999999999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.66  E-value=3.1e-17  Score=126.03  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=59.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccCccccCCCCC
Q 017566           52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLDPAVKRKPFT  115 (369)
Q Consensus        52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~p~~kr~~WT  115 (369)
                      ...+.+++++||+|||++|+++|.+||.++|..||+.|+  |||+.||++||+++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            456677889999999999999999999889999999999  9999999999999999999988764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=3.3e-17  Score=118.99  Aligned_cols=52  Identities=50%  Similarity=1.076  Sum_probs=49.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~  108 (369)
                      .++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            3679999999999999999999878999999999999999999999999984

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=8.5e-17  Score=122.46  Aligned_cols=57  Identities=18%  Similarity=0.346  Sum_probs=54.1

Q ss_pred             ccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          104 QLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      +|+|.+++++||+|||++|+++|++||++|..||+ |+|||+.|||+||+.+|++.+.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence            79999999999999999999999999999999999 7899999999999999988744

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=5e-17  Score=117.98  Aligned_cols=51  Identities=33%  Similarity=0.714  Sum_probs=48.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~  108 (369)
                      ++++||+|||++|+++|.+||.++|..||+.|+|||+.||++||.++|+|+
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            578999999999999999999879999999999999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=3e-16  Score=117.21  Aligned_cols=54  Identities=24%  Similarity=0.450  Sum_probs=50.7

Q ss_pred             CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      +|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|+..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            5788999999999999999999999 58999999999999999999999988765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.61  E-value=1.4e-16  Score=121.01  Aligned_cols=55  Identities=22%  Similarity=0.436  Sum_probs=49.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccCcccc
Q 017566           56 SRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLDPAVK  110 (369)
Q Consensus        56 ~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~p~~k  110 (369)
                      ..++++||+|||++|+++|.+||.++|..||+.++  |||+.||++||+++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            35678999999999999999999889999999876  99999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=8.5e-16  Score=111.45  Aligned_cols=50  Identities=30%  Similarity=0.597  Sum_probs=46.0

Q ss_pred             ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      +++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|..
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998 899999999999999999999998863

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.60  E-value=4.8e-16  Score=116.32  Aligned_cols=55  Identities=18%  Similarity=0.410  Sum_probs=51.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~  108 (369)
                      .+...+++||+|||++|+++|.+||..+|..||+.|++||++||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4567889999999999999999999889999999999999999999999999764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=1.8e-15  Score=110.31  Aligned_cols=50  Identities=24%  Similarity=0.417  Sum_probs=46.4

Q ss_pred             cCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHHHhh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP--GRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~--gRT~~qck~Rw~~~l~rk  159 (369)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            478999999999999999999 68999999999  999999999999998753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.58  E-value=1.7e-15  Score=109.99  Aligned_cols=49  Identities=31%  Similarity=0.661  Sum_probs=46.3

Q ss_pred             ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      +++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999997 59999999999999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.57  E-value=2.7e-15  Score=112.28  Aligned_cols=53  Identities=13%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      .+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 7899999999999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.57  E-value=3.6e-15  Score=114.43  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=53.3

Q ss_pred             ccCccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHHHhhhhh
Q 017566          104 QLDPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP--GRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~--gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      ...+..++++||+|||++|+++|.+|| ++|+.||.+|+  |||+.||++||+++|+..+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            345677899999999999999999999 68999999999  999999999999999987543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6e-16  Score=117.74  Aligned_cols=60  Identities=33%  Similarity=0.516  Sum_probs=55.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCC
Q 017566           52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP  113 (369)
Q Consensus        52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~  113 (369)
                      .+.|..++++||+|||++|+++|..||. +|..||+ ++|||..||++||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            4678899999999999999999999996 8999999 8899999999999999999887754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.7e-15  Score=115.41  Aligned_cols=55  Identities=27%  Similarity=0.407  Sum_probs=51.3

Q ss_pred             CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566          106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~  160 (369)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|...+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i   59 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI   59 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence            4678999999999999999999999 789999999999999999999999987653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.55  E-value=2.1e-15  Score=112.22  Aligned_cols=51  Identities=22%  Similarity=0.504  Sum_probs=47.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCcccccccccccc
Q 017566           55 RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQL  105 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~Rw~~~L  105 (369)
                      ....+++||+|||++|+++|++||.++|..||+.|+ +||++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            345678999999999999999999889999999999 999999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=1.8e-15  Score=110.35  Aligned_cols=49  Identities=29%  Similarity=0.432  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccC
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLD  106 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~  106 (369)
                      ++++||+|||++|+++|.+||.++|..||+.|+  |||+.||++||++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            478999999999999999999889999999999  9999999999998874

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.9e-15  Score=115.34  Aligned_cols=55  Identities=15%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             CccccCCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566          106 DPAVKRKPFTDEEDQIIVAAHAVHG------NKWAVISRLLPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       106 ~p~~kr~~WT~EED~~Ll~lv~~~G------~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~  160 (369)
                      +|.+.+++||+|||++|+++|.+||      ++|..||.+|+|||+.||++||+++|.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999      689999999999999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-15  Score=116.66  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHHhhccCCCccccccccccccCccccCCC
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGA-----RNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP  113 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~-----~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~  113 (369)
                      .+...+++||+|||++|+++|.+||.     .+|..||+.|+|||..||+.||+++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            56778899999999999999999996     6899999999999999999999999998877664

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.52  E-value=3.4e-15  Score=128.02  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=86.0

Q ss_pred             hhHhHhHhhhhhhcCCCceeccCCCCCCCCCCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 017566            7 TEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIA   86 (369)
Q Consensus         7 ~e~e~~ka~~~~ee~~d~~~~d~d~~~~~~~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA   86 (369)
                      .|++.+...+..  .|..-+..+...-    .|+...+|..+|...+.+...+|+||+|||++|+++|.+|| .+|..||
T Consensus         8 eED~~L~~~v~~--~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia   80 (131)
T 3zqc_A            8 AEDDLIREYVKE--NGPQNWPRITSFL----PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIA   80 (131)
T ss_dssp             HHHHHHHHHHHH--HCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHT
T ss_pred             HHHHHHHHHHHH--hCcCCHHHHHHHH----CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHH
Confidence            345555554433  2333344443322    35667789999999999999999999999999999999999 5799999


Q ss_pred             hhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhC
Q 017566           87 RGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLL  140 (369)
Q Consensus        87 ~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l  140 (369)
                      +.|||||..||+.||+++|.+.+..++|+.+--    ......+.+|+.|++.|
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKAADVPKKL  130 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhhhhcchhc
Confidence            999999999999999999999999999987631    11122345688888765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.51  E-value=1.8e-14  Score=109.45  Aligned_cols=51  Identities=33%  Similarity=0.546  Sum_probs=46.1

Q ss_pred             ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCC--CCCHHHHHHHHHHHHHhh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~--gRT~~qck~Rw~~~l~rk  159 (369)
                      .++++||+|||++|+++|.+||. +|+.||+.++  |||+.||++||+++++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            47899999999999999999995 7999999865  999999999999988764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-15  Score=123.04  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=54.4

Q ss_pred             ccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          104 QLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      .++|.+++++||+|||++|+++|.+||++|..||.+|+|||++||++||++++++...
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            5678999999999999999999999999999999999999999999999999988643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.51  E-value=1.9e-14  Score=107.06  Aligned_cols=50  Identities=20%  Similarity=0.409  Sum_probs=46.5

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCCHHHHHHHHHHHH
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP-GRTDNAIKNHWNSTL  156 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~-gRT~~qck~Rw~~~l  156 (369)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            356689999999999999999999 78999999999 999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=7.2e-15  Score=113.73  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCCh
Q 017566           53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD  116 (369)
Q Consensus        53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~  116 (369)
                      ..+...+++||+|||++|+++|.+||. +|..||++|||||..||+.||.++|.+.++. .+++
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~   64 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK   64 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            457788999999999999999999996 8999999999999999999999999877665 4443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=4.2e-14  Score=117.26  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=68.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCcccccccccccc-----CccccCCCCChHHHHH-
Q 017566           52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQL-----DPAVKRKPFTDEEDQI-  121 (369)
Q Consensus        52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L-----~p~~kr~~WT~EED~~-  121 (369)
                      ...+.+++++||+|||+.|+++|++||.++|..|++.+    ++||..+|++||++++     +|.++++.-++.|--. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            34567788999999999999999999998999999965    7999999999999998     7999998888877665 


Q ss_pred             HHHHHHHhCC
Q 017566          122 IVAAHAVHGN  131 (369)
Q Consensus       122 Ll~lv~~~G~  131 (369)
                      +++|+..+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.44  E-value=5.1e-14  Score=109.62  Aligned_cols=62  Identities=27%  Similarity=0.390  Sum_probs=47.7

Q ss_pred             ccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcccc
Q 017566           46 VGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK  110 (369)
Q Consensus        46 ~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~k  110 (369)
                      ..+|.+.+.|..++|+||+|||++|+++|.+||. +|..||+.| |||..||+.||+. |....+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            3478899999999999999999999999999995 599999999 9999999999974 544433

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.44  E-value=9.4e-14  Score=110.64  Aligned_cols=69  Identities=23%  Similarity=0.399  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhh----ccCCCcccccccccccc-----CccccC-CCCChHHHHHHHHHHHH
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARG----IAGRSGKSCRLRWCNQL-----DPAVKR-KPFTDEEDQIIVAAHAV  128 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~----lpgRt~~qcr~Rw~~~L-----~p~~kr-~~WT~EED~~Ll~lv~~  128 (369)
                      ++||+|||+.|+++|++||.++|..|++.    ++|||..||++||++++     +|.+++ .+..++...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999996    89999999999999987     687766 47778888889998864

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=2.6e-13  Score=105.61  Aligned_cols=51  Identities=14%  Similarity=0.343  Sum_probs=47.2

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      +.+.+++||.|||++|++++.+||    ++|.+||++|||||+.||++||+.++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    679999999999999999999998765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=3.8e-13  Score=106.19  Aligned_cols=50  Identities=14%  Similarity=0.447  Sum_probs=46.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      .....+++||+|||++|+++|++|| .+|.+||++|++||..||+.||.++
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3445678999999999999999999 8999999999999999999999987

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.38  E-value=9.1e-14  Score=114.38  Aligned_cols=68  Identities=18%  Similarity=0.392  Sum_probs=62.8

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCc
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP  107 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p  107 (369)
                      |+...+|..+|...+.|..++++||+|||.+|+++|.+|| .+|..||+.|||||..||+.||+.++..
T Consensus        36 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           36 GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            5666789999999999999999999999999999999999 4799999999999999999999988754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.35  E-value=4.1e-13  Score=105.98  Aligned_cols=48  Identities=19%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             cccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566          108 AVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       108 ~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      ...+++||+|||++|+++|.+||.+|..||++|++||+.||++||+++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456899999999999999999999999999999999999999999864

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.34  E-value=9.2e-14  Score=115.09  Aligned_cols=68  Identities=22%  Similarity=0.424  Sum_probs=62.9

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCc
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP  107 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p  107 (369)
                      |+...+|..+|...+.+..++|+||+|||.+|+++|.+||. +|..||+.|||||..||+.||+.++..
T Consensus        33 ~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           33 TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            56667889999999999999999999999999999999995 799999999999999999999887654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.32  E-value=1.7e-12  Score=97.45  Aligned_cols=51  Identities=24%  Similarity=0.393  Sum_probs=46.9

Q ss_pred             ccCCCCChHHHHHHHHHHHHhCCcHHHHH---hhCCCCCHHHHHHHHHHHHHhh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHGNKWAVIS---RLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G~~W~~IA---~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      -++.+||+|||+.|+++|++||.+|+.|+   .++++||..++++||+++.++.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5889999999999999987753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.31  E-value=2.4e-13  Score=115.83  Aligned_cols=67  Identities=24%  Similarity=0.508  Sum_probs=62.4

Q ss_pred             CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566           39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      |+...+|..||.+.+.+..++|+||+|||++|+++|.+|| .+|..||+.|||||..||+.||+.++.
T Consensus        42 ~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           42 NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            5666789999999999999999999999999999999999 579999999999999999999987663

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.30  E-value=4.7e-13  Score=104.13  Aligned_cols=53  Identities=21%  Similarity=0.481  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCccccccccccccC
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      .....+++||++||++|+++|..||   ..+|.+||++|||||..||+.||.+++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3445678999999999999999999   3579999999999999999999987654

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.29  E-value=3.5e-12  Score=101.55  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=45.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhhhh
Q 017566          112 KPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      .+||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||++++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~   55 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence            48999999999999999998 89999995    8999999999999999987543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.90  E-value=5.6e-13  Score=107.36  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566           51 KRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        51 ~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ....+...+|+||+|||++|+++|..||. +|..||..|+|||..||+.||.++|.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            45567788999999999999999999996 79999999999999999999998875

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.25  E-value=8.4e-12  Score=103.44  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCCHHHHHHHHHHHHHhhh
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLL----PGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----~gRT~~qck~Rw~~~l~rk~  160 (369)
                      +..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||++++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999998 899999965    89999999999999998653

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.25  E-value=6.7e-12  Score=106.43  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=50.9

Q ss_pred             ccCccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhh
Q 017566          104 QLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk  159 (369)
                      -+.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            3556778999999999999999999998 89999997    48999999999999999864

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=3.4e-12  Score=119.07  Aligned_cols=55  Identities=29%  Similarity=0.511  Sum_probs=48.5

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHGNK------WAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G~~------W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      +.+++++||+|||++|+++|.+||++      |+.||++|+|||++|||+||+.+|++++-
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35688999999999999999999985      99999999999999999999999998753

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.20  E-value=1.7e-11  Score=99.61  Aligned_cols=50  Identities=26%  Similarity=0.543  Sum_probs=45.4

Q ss_pred             cCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      .+++||.|||++|++++.+||    ++|.+||++|||||+++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999987653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.17  E-value=3.2e-11  Score=102.37  Aligned_cols=54  Identities=24%  Similarity=0.434  Sum_probs=48.4

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhhh
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk~  160 (369)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++...
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            3457899999999999999999998 89999996    489999999999999998653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.08  E-value=2.5e-11  Score=98.57  Aligned_cols=47  Identities=17%  Similarity=0.522  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCcccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      ++.||+|||++|++++.+||   ..+|.+||+.|||||..||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            57899999999999999998   457999999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=2.1e-10  Score=85.97  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTL  156 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l  156 (369)
                      ...+||+||++++++++.+||++|..||.+|++||..||+.+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.96  E-value=6.4e-10  Score=102.94  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=58.5

Q ss_pred             ChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566           81 NWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus        81 nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~  160 (369)
                      +|+.+...|..+.... .++++.--.......+||+||++++++++.+||++|..||++|++||..||+++|+++.+|-.
T Consensus       104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            4555555553333222 224443222223457999999999999999999999999999999999999999998887743


Q ss_pred             h
Q 017566          161 V  161 (369)
Q Consensus       161 ~  161 (369)
                      .
T Consensus       183 L  183 (235)
T 2iw5_B          183 I  183 (235)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=88.23  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=56.9

Q ss_pred             ccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHhhhh
Q 017566           94 GKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLL-----PGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus        94 ~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      ..=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++-+.
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            35678899999966    89999999999999999999999999988     589999999999998776543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.89  E-value=8.3e-10  Score=112.54  Aligned_cols=50  Identities=24%  Similarity=0.329  Sum_probs=45.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566          112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      .+||.||..++++++.+||.+|..||+.|++||..|||++|.++.++...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~l  430 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI  430 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCh
Confidence            48999999999999999999999999999999999999999876665433

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.3e-09  Score=81.60  Aligned_cols=47  Identities=17%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      ...++||+||+++|.+++.+|| .+|..||.+||+||..||..+|...
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4567899999999999999999 5899999999999999999998653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.85  E-value=1.3e-09  Score=81.80  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHH---hhccCCCccccccccccccC
Q 017566           56 SRVKGPWSPEQDAVLSELVSKFGARNWSLIA---RGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        56 ~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA---~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ...+++||+|||+.|+++|++||. +|..|+   .++++||...+++||++...
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            346789999999999999999996 999999   46789999999999987653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.85  E-value=3.1e-09  Score=82.30  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=44.7

Q ss_pred             cccCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          108 AVKRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       108 ~~kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||.+| |||..+|++||+.+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34678999999999999999997    5699999998 99999999999987654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.71  E-value=4.9e-09  Score=81.18  Aligned_cols=49  Identities=24%  Similarity=0.345  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCccccccccccccC
Q 017566           57 RVKGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ...+.||.|||++|.+++.+|+   +++|.+||+.| |||..||+.||..+..
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            3457899999999999999998   35699999998 9999999999986543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.64  E-value=2.5e-08  Score=77.39  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      ...||.+|+++|.+++..|+.    +|.+||..|+|||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999984    599999999999999999999987544

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.55  E-value=4e-08  Score=76.19  Aligned_cols=47  Identities=17%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChHHHHhhccCCCccccccccccccC
Q 017566           60 GPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~---~nW~~IA~~lpgRt~~qcr~Rw~~~L~  106 (369)
                      ..||.+|+++|.+++..|+.   ++|.+||..|||||..+|+.||...+.
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46999999999999999984   579999999999999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.49  E-value=1.2e-07  Score=70.53  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=43.0

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVH--------GNK-WAVISR-LLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~--------G~~-W~~IA~-~l~gRT~~qck~Rw~~~l~  157 (369)
                      |.+||+|||..|++.|.+|        |++ |..+++ .++++|-.++|+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5789999999999999999        666 999999 8999999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.45  E-value=1.1e-07  Score=88.07  Aligned_cols=48  Identities=19%  Similarity=0.403  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      ....+||+||+++|++++.+|| .+|..||+.|++||..||+.+|.++.
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k  178 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  178 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999 68999999999999999999998765

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.41  E-value=7.9e-08  Score=71.60  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChHHHHh-hccCCCccccccccccccC
Q 017566           59 KGPWSPEQDAVLSELVSKF--------GARNWSLIAR-GIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~--------g~~nW~~IA~-~lpgRt~~qcr~Rw~~~L~  106 (369)
                      +.+||+|||.+|+.+|.+|        |..-|+.+|+ .++++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999        3334999999 8999999999999998874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.35  E-value=8e-07  Score=86.06  Aligned_cols=99  Identities=19%  Similarity=0.305  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccc-------ccccc----------------------------
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRL-------RWCNQ----------------------------  104 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~-------Rw~~~----------------------------  104 (369)
                      +.||..+...++.++.+||..+|..||..|+|+|...++.       ||...                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999989999999999999877644       22100                            


Q ss_pred             ------------c---CccccCCCCChHHHHHHHHHHHHhCC---c-HHHHH---h---------hCCCCCHHHHHHHHH
Q 017566          105 ------------L---DPAVKRKPFTDEEDQIIVAAHAVHGN---K-WAVIS---R---------LLPGRTDNAIKNHWN  153 (369)
Q Consensus       105 ------------L---~p~~kr~~WT~EED~~Ll~lv~~~G~---~-W~~IA---~---------~l~gRT~~qck~Rw~  153 (369)
                                  |   .+..+...||++||+.||-++.+||-   . |..|.   +         ++..||+.+|..|-+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                        0   11224468999999999999999996   4 99996   2         456799999999999


Q ss_pred             HHHHh
Q 017566          154 STLRR  158 (369)
Q Consensus       154 ~~l~r  158 (369)
                      .+++-
T Consensus       271 tLi~~  275 (304)
T 1ofc_X          271 TLITL  275 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=1.1e-06  Score=66.15  Aligned_cols=48  Identities=19%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             ccccCCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 017566          107 PAVKRKPFTDEEDQIIVAAHAVHGNKWAVISR-LLPGRTDNAIKNHWNS  154 (369)
Q Consensus       107 p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~-~l~gRT~~qck~Rw~~  154 (369)
                      |.+...+||+||.+++.+++.+||.+|..|++ +|++||..+|...|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            56778899999999999999999999999999 6999999999998864

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.22  E-value=1.5e-06  Score=69.56  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=43.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN---KWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~---~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      ---||.|||+.||..+++-|.   .|+.||+.|.+|+++||++||+.+++
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            347999999999999999997   69999999999999999999998765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.21  E-value=1.4e-07  Score=72.86  Aligned_cols=43  Identities=16%  Similarity=0.390  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChHHHHhhccCCCccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRWC  102 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~---~nW~~IA~~lpgRt~~qcr~Rw~  102 (369)
                      ..||.+|+++|.+++..|+.   .+|.+||+.|||||..+|+.+|.
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            46999999999999999984   37999999999999999999985

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.37  E-value=4.1e-07  Score=69.12  Aligned_cols=45  Identities=16%  Similarity=0.385  Sum_probs=41.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          112 KPFTDEEDQIIVAAHAVHGN---KWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~---~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      --||.|||+.||..+++-|.   .|+.||..| +|+++||.+||+.+++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            36999999999999999998   699999999 9999999999998765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.07  E-value=7.3e-07  Score=68.88  Aligned_cols=43  Identities=21%  Similarity=0.516  Sum_probs=38.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWN  153 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~  153 (369)
                      ..+||.+|+++|.+++.+|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    6999999999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=4.5e-06  Score=62.70  Aligned_cols=49  Identities=12%  Similarity=0.250  Sum_probs=42.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHh-hccCCCcccccccccc
Q 017566           54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR-GIAGRSGKSCRLRWCN  103 (369)
Q Consensus        54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~-~lpgRt~~qcr~Rw~~  103 (369)
                      +|......||+||-+++.+++.+||. +|..|++ .|++|+..||...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence            45556678999999999999999994 8999999 5999999999887653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.91  E-value=2e-05  Score=60.37  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=41.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISR-LLPGRTDNAIKNHWNS  154 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~-~l~gRT~~qck~Rw~~  154 (369)
                      ..+||+||.+++.+++.+||.+|..|++ +|++||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 6999999999999873

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.81  E-value=2.7e-05  Score=63.03  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=41.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNS  154 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~  154 (369)
                      ...||+||.+++.+++..||++|..||.+|++||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998864

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.76  E-value=6.3e-05  Score=60.68  Aligned_cols=50  Identities=12%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHhhh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLP-----GRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~-----gRT~~qck~Rw~~~l~rk~  160 (369)
                      ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++-+
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~   84 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999998763     7999999999999877653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.58  E-value=4.2e-05  Score=78.13  Aligned_cols=47  Identities=19%  Similarity=0.427  Sum_probs=42.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      +...+||.+|-.++++++.+|| .+|..||+.|++||..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3457899999999999999999 5899999999999999999988653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.58  E-value=5e-05  Score=58.15  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHh-hccCCCccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIAR-GIAGRSGKSCRLRWC  102 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~-~lpgRt~~qcr~Rw~  102 (369)
                      ....||+||-+++.+++.+||. +|..|++ .|++|+..+|...|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            3457999999999999999995 8999999 699999999988665

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.48  E-value=6.1e-05  Score=60.91  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWC  102 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~  102 (369)
                      ...||+||.+++.+++..|| .+|..||..||+||..+|.+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence            46799999999999999999 58999999999999999988664

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.41  E-value=0.00062  Score=61.71  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=69.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC--CCChHHHHhh--ccCCCccccccccc-------c-----------------------
Q 017566           58 VKGPWSPEQDAVLSELVSKFG--ARNWSLIARG--IAGRSGKSCRLRWC-------N-----------------------  103 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g--~~nW~~IA~~--lpgRt~~qcr~Rw~-------~-----------------------  103 (369)
                      ....||..|-..|++++.+||  ..+|..|++.  |.+|+...++.-+.       +                       
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~   85 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT   85 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence            345799999999999999999  5689999864  56777644332000       0                       


Q ss_pred             ---------------------cc----------------C----ccccCCCCChHHHHHHHHHHHHhC-CcHHHHHh--h
Q 017566          104 ---------------------QL----------------D----PAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISR--L  139 (369)
Q Consensus       104 ---------------------~L----------------~----p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~--~  139 (369)
                                           .|                .    +......||.+||..||.++.+|| .+|..|-.  .
T Consensus        86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~  165 (211)
T 4b4c_A           86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD  165 (211)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred             hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence                                 00                0    000123599999999999999999 67999965  2


Q ss_pred             C------------CCCCHHHHHHHHHHHHH
Q 017566          140 L------------PGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       140 l------------~gRT~~qck~Rw~~~l~  157 (369)
                      |            ..+++..+..|...+|+
T Consensus       166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          166 LSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             cCccccccccccccCCChHHHHHHHHHHHH
Confidence            2            12456789999876665

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.35  E-value=0.0001  Score=59.59  Aligned_cols=45  Identities=18%  Similarity=0.330  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhc-----cCCCcccccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGI-----AGRSGKSCRLRWCNQL  105 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~l-----pgRt~~qcr~Rw~~~L  105 (369)
                      ..||.||++.|.+|+++|+. +|..|+..+     ++||..+.+.||....
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            78999999999999999995 799999998     4899999999997644

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.10  E-value=0.00046  Score=54.31  Aligned_cols=48  Identities=15%  Similarity=0.394  Sum_probs=39.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----------cHHHHHhhCC----CCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN----------KWAVISRLLP----GRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~----------~W~~IA~~l~----gRT~~qck~Rw~~~l~r  158 (369)
                      ...||.+|-.+||.++..+..          .|..||..|.    .||+.||+++|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999875321          3999999763    69999999999997665

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.09  E-value=0.0013  Score=65.16  Aligned_cols=99  Identities=20%  Similarity=0.321  Sum_probs=77.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCcccccc-------ccccc---------------------------
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRL-------RWCNQ---------------------------  104 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~-------Rw~~~---------------------------  104 (369)
                      +.||.-+=..++.++.+||..+-..||..|. |+|...++.       ||...                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999889999999997 888866653       11110                           


Q ss_pred             -------------c----Ccc-ccCCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCCHHHHHH
Q 017566          105 -------------L----DPA-VKRKPFTDEEDQIIVAAHAVHGN----KWAVISRL------------LPGRTDNAIKN  150 (369)
Q Consensus       105 -------------L----~p~-~kr~~WT~EED~~Ll~lv~~~G~----~W~~IA~~------------l~gRT~~qck~  150 (369)
                                   |    .+. .+...||++||..||-++.+||-    .|..|-..            |..||+.+|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    111 13457999999999999999995    49999432            35799999999


Q ss_pred             HHHHHHHh
Q 017566          151 HWNSTLRR  158 (369)
Q Consensus       151 Rw~~~l~r  158 (369)
                      |-..+++-
T Consensus       284 Rc~tLi~~  291 (374)
T 2y9y_A          284 RGNTLLQC  291 (374)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.86  E-value=0.00022  Score=56.19  Aligned_cols=48  Identities=21%  Similarity=0.430  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC------C---ChHHHHhhcc----CCCcccccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGA------R---NWSLIARGIA----GRSGKSCRLRWCNQL  105 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~------~---nW~~IA~~lp----gRt~~qcr~Rw~~~L  105 (369)
                      +...||.+|-..|+.+......      .   .|..||..|.    .||+.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4568999999999999986421      1   3999999874    799999999998654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.63  E-value=0.00032  Score=53.25  Aligned_cols=45  Identities=16%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CChHHHHhhccCCCcccccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGA--RNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~--~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      -.||.|||..|+...++-|+  .-|..||+.| +|++.|+.+||...+
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM   61 (70)
Confidence            36999999999999999995  3599999999 999999999998755

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.57  E-value=0.0017  Score=51.99  Aligned_cols=47  Identities=19%  Similarity=0.358  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CChHHHHhhccCCCccccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGA--RNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~--~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      +--.||.|||..|+...++-|.  ..|..||+.|.+|+..|+.+||+..
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            3457999999999999999985  4699999999999999999999753

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=96.22  E-value=0.012  Score=44.25  Aligned_cols=50  Identities=20%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             ccCCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCCHHHHHHHHHHHHHh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHGNK---WAVISRLL--PGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--~gRT~~qck~Rw~~~l~r  158 (369)
                      ..+-.||+|.++.+++++.++|..   |..|-+.|  +|.|..+|+.|.+.|..+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999965   88998864  689999999998876543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.83  E-value=0.017  Score=46.50  Aligned_cols=45  Identities=18%  Similarity=0.331  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-----CCCcccccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIA-----GRSGKSCRLRWCNQL  105 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-----gRt~~qcr~Rw~~~L  105 (369)
                      ..||.||...|..|+.+|+. +|.-|+....     .||..+.++||....
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            57999999999999999995 7999998763     689999999987643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.99  E-value=0.08  Score=51.14  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=42.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      .+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            467999999999999999997 599999999999999998776665543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.09  E-value=0.093  Score=39.37  Aligned_cols=48  Identities=10%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHhhcc--CCCcccccccccc
Q 017566           56 SRVKGPWSPEQDAVLSELVSKFGARN--WSLIARGIA--GRSGKSCRLRWCN  103 (369)
Q Consensus        56 ~~~kg~WT~EED~~L~~lV~~~g~~n--W~~IA~~lp--gRt~~qcr~Rw~~  103 (369)
                      .+.+-.||+|..+.++.+|...|...  |+.|.+.|.  |.|..+++-+..+
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            44567899999999999999999432  899999874  7788777665443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.57  E-value=0.15  Score=45.74  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             ccCCCCChHHHHHHHHHHHHhC---CcHHHHHh--hCCCCCHHHHHHHHHHHHHh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHG---NKWAVISR--LLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G---~~W~~IA~--~l~gRT~~qck~Rw~~~l~r  158 (369)
                      -....||+.|-..|++++.+||   .+|..|+.  .|.++|..+|+..+..++.+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999   46999987  48899999999877765544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.41  E-value=0.19  Score=47.76  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHh
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIAR   87 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~   87 (369)
                      .|+.+||..|+..|.+||.++|..|..
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            599999999999999999999999975

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=81.58  E-value=2.8  Score=39.66  Aligned_cols=48  Identities=10%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC---CcHHHHHh--hCCCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHG---NKWAVISR--LLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G---~~W~~IA~--~l~gRT~~qck~Rw~~~l~r  158 (369)
                      +++||+.|-+.|++.+.+||   .+|..|+.  .|+.++...++.-|+.++..
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~   55 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA   55 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            57899999999999999999   47999987  68899999999988877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-20
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-12
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-17
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-14
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	6e-05
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-14
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-10
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-07
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-08
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	8e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-06
d1fexa_	59	a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 96	0.004

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.7 bits (204), Expect = 2e-20
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 59  KGPWSPEQDAVLSELVSKFGAR-----NWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP 113
           K  ++ E+D  + ++V K   R      +  I+  +   +G S R R+   L   ++   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 114 FTDEEDQIIVAAHA 127
             D+  +++     
Sbjct: 61  EVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (144), Expect = 4e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 111 RKPFTDEEDQIIVAAHAVHGNK------WAVISRLLPGRTDNAIKNHWNSTLRRR 159
           +  FTDEED+ I+     +  +      +  IS  +P  T N+I++ +   L +R
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 58  VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           +KGPW+ E+D  L +LV K+G + WS+IA+ + GR GK CR RW N L+P
Sbjct: 2   IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 109 VKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR 157
           + + P+T EEDQ ++     +G  +W+VI++ L GR     +  W++ L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107
           K  W+ E+D  L +LV + G  +W +IA  +  R+   C+ RW   L+P
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (141), Expect = 4e-12
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 111 RKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLR 157
           +  +T EED+ +      +G + W VI+  LP RTD   ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.4 bits (175), Expect = 7e-17
 Identities = 31/47 (65%), Positives = 39/47 (82%)

Query: 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR 157
           +  +T+EED+II  AH   GN+WA I++LLPGRTDNAIKNHWNST+R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105
           K  W+ E+D ++ +   + G   W+ IA+ + GR+  + +  W + +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 61  PWSPEQDAVLSELVSKFGARNWSLIAR----GIAGRSGKSCRLRWCNQLDPAVKRK---- 112
           P+S  +   L E V   G   W  +          R+    + +W   +  A        
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 113 --PFTDEEDQIIVAAHAVHGNK 132
             P   +    ++AAHA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 112 KPFTDEEDQIIVAAHAVHGNK-WAVISRL----LPGRTDNAIKNHWNSTLRRRG 160
           +PF+  E + +V A    G   W  +          RT   +K+ W + +    
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 4e-14
 Identities = 6/49 (12%), Positives = 18/49 (36%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158
               ++++E +        H   + +I+  L  +T      ++  T + 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 51  KRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN 103
           K     +V   WS ++     E   +   +N+ LIA  +  ++   C L +  
Sbjct: 9   KVYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158
               +T EE  + V A   +G  +  IS ++  ++   +KN + +  RR
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 57  RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN 103
           +    W+ E+  +  + + K+G R++  I+  I  +S    +  + N
Sbjct: 3   KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVN 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIAR--GIAGRSGKSCRLRWCN 103
           +  W  E+D  L   V K+G  NWS I        R+    + RW  
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGNK-WAVISRLLP--GRTDNAIKNHWNSTLR 157
           KR+ +  EED+ + +    +G   W+ I        RT   +K+ W +  +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIAR--GIAGRSGKSCRLRWCNQLDPAV 109
           K  W+ E+   +   V K+G  NW+ I++      R+    + RW       +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 7e-08
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 110 KRKPFTDEEDQIIVAAHAVHGNK-WAVISRL--LPGRTDNAIKNHWNSTLRRRGV 161
           K++ +T EE + + A    +G   WA IS+      RT   IK+ W  T++R G+
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRLGM 54

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159
              +T EE ++     A  G +W  IS+L+  RT   +K++     + +
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 50

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 59  KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118
              W+ E+  +  + ++KFG R W+ I++ I  R+    +          VK     +  
Sbjct: 2   SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 119 DQ 120
           +Q
Sbjct: 61  NQ 62

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 49  GSKRSGRSRV-KGPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRW 101
           GS R  R+R  + PW+  Q  +L   + ++       W  IAR +  +S + C  R+
Sbjct: 1   GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 5e-10
 Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 107 PAVKRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHW 152
                +P+T  + +++  A   +     + W  I+R +P ++       +
Sbjct: 8   ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 61  PWSPEQDAVLSELVSKFGARN---WSLIARGIAGRSGKSCRLRWCNQLDPAVKRK----- 112
           PWS +++      ++ +       W+ +AR + GR+ +  +  +   L   +K       
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKYIESGKV 61

Query: 113 PF 114
           PF
Sbjct: 62  PF 63

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 112 KPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLR 157
           +P++ +E++    A AV+     ++WA ++R + GRT   +K H+   + 
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 8e-09
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 62  WSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCN 103
           W+ +++  L E V   G  NW  +A  +  ++ + C   +  
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 114 FTDEEDQIIVAAHAVHGNK-WAVISRLLPGRTDNAIKNHWN 153
           +T +E+  ++ A    G   W  ++  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 92  RSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK---WAVISRLLPGRTDNAI 148
            S  +             K   +T E D++I+      G +   ++VIS+ L  +T   +
Sbjct: 14  ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73

Query: 149 KNHWNSTLRR 158
            + +   ++ 
Sbjct: 74  SHRFRELMQL 83

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 50  SKRSGRSRVKGPWSPEQDAVLSELVSKFGARN--WSLIARGIAGRSGKSCRLRW 101
           SK S        W+ E D V+  +  + GA+   +S+I++ +  ++      R+
Sbjct: 24  SKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 111 RKPFTDEEDQII---VAAHA-----VHGNK-WAVISRL-LPGRTDNAIKNHWNSTLR 157
           R  FTD +D  I   V  +A     V GN  W  + +  L   +  ++K+ +   LR
Sbjct: 2   RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.74
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.59
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.48
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.48
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.46
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.35
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.34
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.34
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.33
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.26
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.2
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.18
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.18
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.93
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.81
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.32
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.17
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.1
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.93
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.52
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.44
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.68
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.26
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.2
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.45
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.33
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.52
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	83.55

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.3e-20  Score=149.44  Aligned_cols=71  Identities=18%  Similarity=0.237  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHh
Q 017566           59 KGPWSPEQDAVLSELVSKFGAR-----NWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVH  129 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~-----nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~  129 (369)
                      |+.||+|||++|+++|.+||..     +|..||+.|||||++|||+||+++|+|.+++++||.+||++|+.++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            5789999999999999999964     3999999999999999999999999999999999999999988766444

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.5e-18  Score=124.97  Aligned_cols=52  Identities=50%  Similarity=1.076  Sum_probs=49.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566           57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~  108 (369)
                      .+||+||+|||++|+++|.+||.++|..||+.|++||..||++||+++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            3689999999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.8e-17  Score=116.86  Aligned_cols=47  Identities=66%  Similarity=1.129  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      +.+||+|||++|+++|.+||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=7.2e-18  Score=120.37  Aligned_cols=50  Identities=34%  Similarity=0.750  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA  108 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~  108 (369)
                      |++||+|||++|+.+|.+||.++|..||+.|+|||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999889999999999999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.4e-16  Score=114.49  Aligned_cols=50  Identities=30%  Similarity=0.653  Sum_probs=46.5

Q ss_pred             ccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          109 VKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       109 ~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      +.||+||+|||++|+++|.+|| .+|..||+.|++||+.||++||+++|..
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 4799999999999999999999998753

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.59  E-value=2.4e-16  Score=123.65  Aligned_cols=73  Identities=16%  Similarity=0.318  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhh----ccCCCcccccccccccc-----CccccCCCCChHHHHHHHHHHHHhC
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARG----IAGRSGKSCRLRWCNQL-----DPAVKRKPFTDEEDQIIVAAHAVHG  130 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~----lpgRt~~qcr~Rw~~~L-----~p~~kr~~WT~EED~~Ll~lv~~~G  130 (369)
                      .+||+|||++|+.+|.+||.++|..|++.    +++||..||++||+++|     .+..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            37999999999999999999999999985    57999999999999988     4677888999877   444555555


Q ss_pred             CcHHH
Q 017566          131 NKWAV  135 (369)
Q Consensus       131 ~~W~~  135 (369)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.3e-15  Score=106.32  Aligned_cols=48  Identities=31%  Similarity=0.616  Sum_probs=44.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      |++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            578999999999999999995 699999999999999999999998853

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-15  Score=110.36  Aligned_cols=53  Identities=23%  Similarity=0.474  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhh--ccCCCccccccccccccCcccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARG--IAGRSGKSCRLRWCNQLDPAVK  110 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~--lpgRt~~qcr~Rw~~~L~p~~k  110 (369)
                      ++++||+|||++|+.+|++||.++|..||+.  +++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4678999999999999999998899999997  5599999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-14  Score=102.89  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=43.5

Q ss_pred             cCCCCChHHHHHHHHHHHHhCC-cHHHHHhhC--CCCCHHHHHHHHHHHHH
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRLL--PGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l--~gRT~~qck~Rw~~~l~  157 (369)
                      ++++||+|||++|+++|.+||. +|+.|++.+  .+||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999996 799999874  59999999999998754

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-15  Score=104.10  Aligned_cols=45  Identities=20%  Similarity=0.529  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      .||+|||.+|+++|.+||.+||..||+.|++||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999989999999999999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.7e-14  Score=102.73  Aligned_cols=50  Identities=32%  Similarity=0.508  Sum_probs=45.4

Q ss_pred             cCCCCChHHHHHHHHHHHHhCC-cHHHHHhh--CCCCCHHHHHHHHHHHHHhh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGN-KWAVISRL--LPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~--l~gRT~~qck~Rw~~~l~rk  159 (369)
                      ++.+||+|||++|+++|++||. +|+.||+.  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            4789999999999999999995 79999997  56999999999999988764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=9.8e-15  Score=102.64  Aligned_cols=46  Identities=24%  Similarity=0.663  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      |.+||+|||++|+++|.+||. +|..||++|||||..||+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            578999999999999999995 7999999999999999999999876

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.9e-14  Score=113.48  Aligned_cols=52  Identities=29%  Similarity=0.475  Sum_probs=48.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNK------WAVISRLLPGRTDNAIKNHWNSTLRRRGVE  162 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~------W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~  162 (369)
                      |++||+|||++|+++|.+||.+      |..||.+|||||+.|||+||+++|...+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5799999999999999999975      999999999999999999999999998644

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=104.42  Aligned_cols=48  Identities=29%  Similarity=0.438  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCcccccccccccc
Q 017566           58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQL  105 (369)
Q Consensus        58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L  105 (369)
                      ++++||+|||++|+++|.+||.++|..||+.++  +||+.||++||+++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999989999999754  999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.7e-14  Score=103.61  Aligned_cols=50  Identities=24%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRG  160 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~  160 (369)
                      ...||+|||++|++++.+||++|..||.+|++||+.||++||+.++++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999988763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=97.03  Aligned_cols=44  Identities=16%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             CCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 017566          113 PFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTL  156 (369)
Q Consensus       113 ~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l  156 (369)
                      .||.|||.+|+++|.+||. +|..||.+|++||+.||++||++++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            5999999999999999995 6999999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-13  Score=100.35  Aligned_cols=52  Identities=21%  Similarity=0.489  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhccCCCcccccccccc
Q 017566           52 RSGRSRVKGPWSPEQDAVLSELVSKFGAR---NWSLIARGIAGRSGKSCRLRWCN  103 (369)
Q Consensus        52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~---nW~~IA~~lpgRt~~qcr~Rw~~  103 (369)
                      ...+...+++||+|||++|+++|..||.+   +|.+||+.|||||+.||+.||+.
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34455667899999999999999999975   49999999999999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.6e-13  Score=96.89  Aligned_cols=50  Identities=14%  Similarity=0.324  Sum_probs=45.4

Q ss_pred             CccccCCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHH
Q 017566          106 DPAVKRKPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       106 ~p~~kr~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      .+...+.+||+|||++|+++|.+||.    +|..||.+|||||+.||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567889999999999999999996    499999999999999999999864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-13  Score=103.28  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHH
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE  118 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EE  118 (369)
                      .+||+|||.+|+++|..|| .+|..||++||+||..||+.||.+++.+..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 689999999999999999999999998887777766543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=7.8e-13  Score=105.23  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             hccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCc---HHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566           88 GIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK---WAVISRLLPGRTDNAIKNHWNSTLRRR  159 (369)
Q Consensus        88 ~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~---W~~IA~~l~gRT~~qck~Rw~~~l~rk  159 (369)
                      .+|..+..++..++.+..+.......||.|||+.||+.++++|.+   |..||+.|+|||++||++||+.+++..
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            456778888888888888888888999999999999999999987   999999999999999999999988765

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=1.7e-12  Score=96.26  Aligned_cols=46  Identities=28%  Similarity=0.606  Sum_probs=42.0

Q ss_pred             CCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566          112 KPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~~~l~  157 (369)
                      .+||+|||++|++++.+||.    +|.+||.+|+|||+.||++||+.++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999996    49999999999999999999976544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.26  E-value=3.3e-13  Score=100.17  Aligned_cols=44  Identities=18%  Similarity=0.561  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hHHHHhhccCCCcccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGARN---WSLIARGIAGRSGKSCRLRWCN  103 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~n---W~~IA~~lpgRt~~qcr~Rw~~  103 (369)
                      .+||+|||++|.++|.+||.++   |.+||..|||||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999754   9999999999999999999953

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=1.1e-11  Score=96.61  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=44.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhhhh
Q 017566          112 KPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRRGV  161 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk~~  161 (369)
                      .|||.|||++|+++|.+||. +|+.|++.    +++||+.||++||+++|+....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            38999999999999999996 79999984    6899999999999999986533

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.4e-12  Score=93.09  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=44.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      ..+||++||.+|++++..||.+|..||.+|+|||..||++||+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.4e-12  Score=93.95  Aligned_cols=46  Identities=13%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      ...+||+||+++|++++.+||.+|..||.+|+|||..||++||+..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999864

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.6e-11  Score=87.19  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566           59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL  105 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L  105 (369)
                      ..+||++||++|..++..|| .+|..||++|+|||..||+.+|.++.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35799999999999999999 57999999999999999999998765

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.5e-11  Score=88.01  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566           55 RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        55 ~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      ......+||+|||.+|+.+|.+|| .+|..||+.|||||..||+.+|...
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            334557899999999999999999 5899999999999999999999754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.4e-09  Score=86.09  Aligned_cols=58  Identities=21%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             cCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHhhccCCCccccccccccc
Q 017566           47 GEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARN--WSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        47 ~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~n--W~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      ....+...+..+...||.|||++|++.++++|...  |..||+.|+||++.||+.||...
T Consensus        21 A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             cccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            44455556667778999999999999999999543  99999999999999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=4.5e-07  Score=65.18  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=40.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 017566          112 KPFTDEEDQIIVAAHAVHGNKWAVISR-LLPGRTDNAIKNHWNS  154 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~-~l~gRT~~qck~Rw~~  154 (369)
                      ..||+||..++.+++..||.+|..|++ ++|+||..||.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            479999999999999999999999998 5799999999999974

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.8e-07  Score=66.88  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChHHHHhhccCCCccccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRWCNQ  104 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~---~nW~~IA~~lpgRt~~qcr~Rw~~~  104 (369)
                      +.||++|+++|.+++.+|+.   ++|.+||..| ||+..+|..||+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            46999999999999999974   3599999999 99999999999754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.8e-06  Score=62.45  Aligned_cols=43  Identities=16%  Similarity=0.312  Sum_probs=39.3

Q ss_pred             CCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566          112 KPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNST  155 (369)
Q Consensus       112 ~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~  155 (369)
                      ..||.+|+.+|.+++.+|.    .+|.+||..| |||..+|..||+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999996    4599999999 99999999999764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.3e-06  Score=61.36  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHh-hccCCCcccccccccc
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIAR-GIAGRSGKSCRLRWCN  103 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~-~lpgRt~~qcr~Rw~~  103 (369)
                      .||+||-.++.+++..|| .+|..|++ .+|+||..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999 58999998 4799999999997754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=3.9e-05  Score=55.21  Aligned_cols=47  Identities=26%  Similarity=0.459  Sum_probs=41.0

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHG--------NK-WAVISR-LLPGRTDNAIKNHWNSTLR  157 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G--------~~-W~~IA~-~l~gRT~~qck~Rw~~~l~  157 (369)
                      |.+||.|||+.|++.|+++.        +. |..+++ .++.+|-...|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999873        33 999996 6899999999999988764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.52  E-value=0.00012  Score=53.39  Aligned_cols=49  Identities=20%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCcH---HHHHhh--CCCCCHHHHHHHHHHHHHh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNKW---AVISRL--LPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~W---~~IA~~--l~gRT~~qck~Rw~~~l~r  158 (369)
                      .+-.||+||+++++.++..||..|   ..|...  ++|+|..+|+.|.+.|..+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999987   467664  6899999999999887554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=0.00018  Score=48.41  Aligned_cols=46  Identities=26%  Similarity=0.461  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCcHHHHHh---hCCCCCHHHHHHHHHHHH
Q 017566          111 RKPFTDEEDQIIVAAHAVHGNKWAVISR---LLPGRTDNAIKNHWNSTL  156 (369)
Q Consensus       111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~---~l~gRT~~qck~Rw~~~l  156 (369)
                      |..||.||-.-|+..|+.+|+.|..|-=   +-+||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            4679999999999999999999999964   458999999999998753

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00036  Score=50.03  Aligned_cols=48  Identities=17%  Similarity=0.336  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------C--hHHHHh-hccCCCccccccccccccC
Q 017566           59 KGPWSPEQDAVLSELVSKFGAR------N--WSLIAR-GIAGRSGKSCRLRWCNQLD  106 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~------n--W~~IA~-~lpgRt~~qcr~Rw~~~L~  106 (369)
                      +-+||.+||+.|++.|+.+...      |  |+.+++ .++.+|-.+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            3579999999999999998522      2  999995 6799999999999998873

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.00061  Score=49.55  Aligned_cols=49  Identities=10%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCh--HHHHhhc--cCCCccccccccccc
Q 017566           56 SRVKGPWSPEQDAVLSELVSKFGARNW--SLIARGI--AGRSGKSCRLRWCNQ  104 (369)
Q Consensus        56 ~~~kg~WT~EED~~L~~lV~~~g~~nW--~~IA~~l--pgRt~~qcr~Rw~~~  104 (369)
                      ++.+-.||+||.++++.+|..+|.++|  ..|...|  +++|..||+-+..+|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            344567999999999999999997555  6787765  688999988765443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.013  Score=42.79  Aligned_cols=49  Identities=16%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCc----HHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566          110 KRKPFTDEEDQIIVAAHAVHGNK----WAVISRLLPGRTDNAIKNHWNSTLRR  158 (369)
Q Consensus       110 kr~~WT~EED~~Ll~lv~~~G~~----W~~IA~~l~gRT~~qck~Rw~~~l~r  158 (369)
                      .-+.|+++|-.+|-.++..+.+.    |..+|-.+..||+.+|...|+.-++.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34689999999999999887754    99999999999999999999875443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.017  Score=42.10  Aligned_cols=49  Identities=16%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhccCCCccccccccccccCc
Q 017566           59 KGPWSPEQDAVLSELVSKFGAR---NWSLIARGIAGRSGKSCRLRWCNQLDP  107 (369)
Q Consensus        59 kg~WT~EED~~L~~lV~~~g~~---nW~~IA~~lpgRt~~qcr~Rw~~~L~p  107 (369)
                      .+.|+++|-.+|-.++......   -|..||..++.|++-.|...|...+.-
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            4689999999999999988743   399999999999999999999876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.45  E-value=0.013  Score=39.20  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhcc---CCCcccccccccc
Q 017566           60 GPWSPEQDAVLSELVSKFGARNWSLIARGIA---GRSGKSCRLRWCN  103 (369)
Q Consensus        60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lp---gRt~~qcr~Rw~~  103 (369)
                      ..||.||-.-|...|+++| ..|+.|.=.+|   ||+.......|++
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            4699999999999999999 57999987664   9998877766653

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.33  E-value=0.17  Score=34.67  Aligned_cols=44  Identities=14%  Similarity=0.152  Sum_probs=38.4

Q ss_pred             CCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 017566          113 PFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTL  156 (369)
Q Consensus       113 ~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l  156 (369)
                      .|+.-|=..++.+..+||. +-..||..|.|+|..+|+.......
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4999999999999999995 6999999999999999987655433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.52  E-value=0.42  Score=38.51  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             cccccccccccc--CccccCCCCChHHHHHHHHHHHHhCCc----HHHHHhh------------CCCCCHHHHHHHHHHH
Q 017566           94 GKSCRLRWCNQL--DPAVKRKPFTDEEDQIIVAAHAVHGNK----WAVISRL------------LPGRTDNAIKNHWNST  155 (369)
Q Consensus        94 ~~qcr~Rw~~~L--~p~~kr~~WT~EED~~Ll~lv~~~G~~----W~~IA~~------------l~gRT~~qck~Rw~~~  155 (369)
                      ..+|+.-|...-  .+..+...+|+|||.-|+-.+.+||-.    |..|-..            |..||+..+..|-+.+
T Consensus        30 i~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL  109 (128)
T d1ofcx2          30 MSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL  109 (128)
T ss_dssp             HHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred             HHHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHH
Confidence            345555454321  134455579999999999999999943    9887432            2579999999999988


Q ss_pred             HHhhhh
Q 017566          156 LRRRGV  161 (369)
Q Consensus       156 l~rk~~  161 (369)
                      ++--.+
T Consensus       110 i~~i~k  115 (128)
T d1ofcx2         110 ITLIER  115 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            865433

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.55  E-value=0.41  Score=32.71  Aligned_cols=39  Identities=15%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccc
Q 017566           61 PWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRL   99 (369)
Q Consensus        61 ~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~   99 (369)
                      .|+.-|=..++++..+||..+-..||..|.|+|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999999988876544