Citrus Sinensis ID: 017598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MVKPCWKSSYEDEDSGRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCSSPFSMRGGTGFHPHY
ccccccccccccccccccccccEEEcccccEEEEEEEEEEcccccccccEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEcccccEEEEEEccccccEEEEccccccccccHHHHHHHHHHccccccEEEEEcccEEEccccccccccccHHHHcccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccc
cccccccccccccccccccccEEEccccccccccEEHHHHcccHHHHHHcEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccEEEEEEEEccEEEEEEcccccEEEEEccccccEEEEEEcccccccccHHHHHHHHHHcccccEEEEEEccccEEcEEEEEEHcccHHHHccccccccccHHHccccccccccEEEccccEEEEEcccccEEEEEEcccHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccEccccccccccc
mvkpcwkssyededsgridgllwykdlgphvygeFSMALVQANSimedqcqlesgplsssnsgphgtfvgvydghggpetarFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKkewpskpnmasvgscCLVGLICSGLLYIANVGDSRVVlgraqrgtrEVSAIQVSMEHNANIESVRDElhslhphdpqivVLKHKVWRVKGIIQVSRAIGDAYLKRaefnreplaskfrlpepfeepiisaepsilvhklypedqfLIFASDglwehlsneeAVDIvqnyprhgIARRLVKAALKEAAKKREMRFSDLkkidrgvrrhfhdDVSVVVIYLdpglidqsfncsspfsmrggtgfhphy
mvkpcwkssyededsgrIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAakkremrfsdlkkidrgvrrhfhddVSVVVIYLDPGLIDQSFNCSSPFSMRGGTGFHPHY
MVKPCWKSSYEDEDSGRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIarrlvkaalkeaakkremrFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCSSPFSMRGGTGFHPHY
****************RIDGLLWYKDLGPHVYGEFSMALVQANSIM********************TFVGVYDGHGGPETARFISDNLFQNLKRFASEHH*MSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQV**************LHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAA****MRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNC****************
***********************YKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKK********ASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPR******************REMRFSDLKKIDRGVRRHFHDDVSVVVIYLD**************************
**************SGRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQ*********NSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCSSPFSMRGGTGFHPHY
****CWKSSY******RIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPG************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVKPCWKSSYEDEDSGRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCSSPFSMRGGTGFHPHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q9LHJ9385 Probable protein phosphat yes no 0.981 0.940 0.679 1e-151
Q5Z8P0392 Probable protein phosphat yes no 0.981 0.923 0.666 1e-147
Q9SD12379 Probable protein phosphat no no 0.951 0.926 0.668 1e-146
Q94CL8384 Probable protein phosphat no no 0.986 0.947 0.640 1e-146
Q9FKX4385 Probable protein phosphat no no 0.940 0.901 0.673 1e-142
Q10S32399 Probable protein phosphat no no 0.943 0.872 0.681 1e-141
Q501F9370 Probable protein phosphat no no 0.983 0.981 0.659 1e-140
Q5PNS9400 Probable protein phosphat no no 0.964 0.89 0.655 1e-139
Q7XCJ7393 Probable protein phosphat no no 0.970 0.910 0.647 1e-137
Q0V7V2384 Probable protein phosphat no no 0.867 0.833 0.578 1e-112
>sp|Q9LHJ9|P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1 Back     alignment and function desciption
 Score =  533 bits (1372), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/368 (67%), Positives = 308/368 (83%), Gaps = 6/368 (1%)

Query: 1   MVKPCW-----KSSYEDEDS-GRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLES 54
           MV PCW     K  +   D+ GR DGLLWYKD G HV GEFSM+++QAN+++ED  +LES
Sbjct: 10  MVAPCWRRPSVKGDHSTRDANGRCDGLLWYKDSGNHVAGEFSMSVIQANNLLEDHSKLES 69

Query: 55  GPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAAT 114
           GP+S  +SGP  TFVGVYDGHGGPE ARF++ +LF N+++F SE+H MS NVI KAF AT
Sbjct: 70  GPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIRKFTSENHGMSANVITKAFLAT 129

Query: 115 EDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAI 174
           E+DFLSLV+++W  KP +ASVG+CCLVG+ICSGLLYIAN GDSRVVLGR ++  + V A+
Sbjct: 130 EEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLYIANAGDSRVVLGRLEKAFKIVKAV 189

Query: 175 QVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNRE 234
           Q+S EHNA++ESVR+EL SLHP+DPQIVVLKHKVWRVKGIIQVSR+IGDAYLK+AEFNRE
Sbjct: 190 QLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKKAEFNRE 249

Query: 235 PLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPR 294
           PL +KFR+PE F +PI+ AEP+I VHK++PEDQFLIFASDGLWEHLSN+EAVDIV   PR
Sbjct: 250 PLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIVNTCPR 309

Query: 295 HGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCS 354
           +GIAR+L+K AL+EAAKKREMR+SDLKKIDRGVRRHFHDD++V+V++LD  L+ +S +  
Sbjct: 310 NGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRR 369

Query: 355 SPFSMRGG 362
              S+ GG
Sbjct: 370 PLLSISGG 377

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q5Z8P0|P2C60_ORYSJ Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1 Back     alignment and function description
>sp|Q9SD12|P2C46_ARATH Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1 Back     alignment and function description
>sp|Q94CL8|P2C48_ARATH Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKX4|P2C79_ARATH Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1 Back     alignment and function description
>sp|Q10S32|P2C28_ORYSJ Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1 Back     alignment and function description
>sp|Q501F9|P2C67_ARATH Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1 Back     alignment and function description
>sp|Q5PNS9|P2C64_ARATH Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1 Back     alignment and function description
>sp|Q7XCJ7|P2C72_ORYSJ Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1 Back     alignment and function description
>sp|Q0V7V2|P2C42_ARATH Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
297741509380 unnamed protein product [Vitis vinifera] 0.983 0.955 0.752 1e-167
225439795387 PREDICTED: probable protein phosphatase 0.983 0.937 0.737 1e-165
449440043370 PREDICTED: probable protein phosphatase 0.983 0.981 0.729 1e-158
255568468372 protein phosphatase 2c, putative [Ricinu 0.989 0.981 0.712 1e-157
224100889386 predicted protein [Populus trichocarpa] 0.986 0.943 0.695 1e-155
225448757385 PREDICTED: probable protein phosphatase 0.986 0.945 0.702 1e-153
224109644386 predicted protein [Populus trichocarpa] 0.986 0.943 0.679 1e-151
255579574395 protein phosphatase 2c, putative [Ricinu 0.991 0.926 0.680 1e-151
224133996397 predicted protein [Populus trichocarpa] 0.989 0.919 0.678 1e-149
297834066386 phosphatase 2C family protein [Arabidops 0.981 0.937 0.672 1e-149
>gi|297741509|emb|CBI32641.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 273/363 (75%), Positives = 328/363 (90%)

Query: 1   MVKPCWKSSYEDEDSGRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSS 60
           MVKPCWK S E + SGR+DGLLWYKDLG H+ GEFSMA++QANS++EDQ QLESGPLS  
Sbjct: 9   MVKPCWKPSVEGDSSGRVDGLLWYKDLGQHINGEFSMAVIQANSLLEDQSQLESGPLSFL 68

Query: 61  NSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLS 120
           +SGP+GTF+GVYDGHGGPE +RF+++NLF NLK+FA+EH E+SE+VIRKAF+ATE+ FLS
Sbjct: 69  DSGPYGTFIGVYDGHGGPEASRFVNENLFPNLKKFATEHQEISESVIRKAFSATEEGFLS 128

Query: 121 LVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEH 180
           LVKK+W +KP +ASVGSCCL G+IC+GLLYIANVGDSR VLGRA+R +REV+AIQ+S EH
Sbjct: 129 LVKKQWLTKPQIASVGSCCLAGIICNGLLYIANVGDSRAVLGRAERASREVTAIQLSTEH 188

Query: 181 NANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKF 240
           NA+IESVR+EL SLHPHD  IVVL+HKVWRVKG+IQVSR+IGDAYLK+AEFNREPL S+F
Sbjct: 189 NASIESVREELRSLHPHDKHIVVLRHKVWRVKGLIQVSRSIGDAYLKKAEFNREPLLSRF 248

Query: 241 RLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPRHGIARR 300
           RLP+PF EPI+S+EPSI VHK+ PEDQF+IFASDGLWEHLSN+EAV+IV NYPR+GIAR+
Sbjct: 249 RLPQPFIEPILSSEPSISVHKIRPEDQFIIFASDGLWEHLSNQEAVNIVNNYPRNGIARK 308

Query: 301 LVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCSSPFSMR 360
           LVK AL+EAAKKREMR+SDLKKIDRGVRRHFHDD++VVV++LDP LI +S +   PFS++
Sbjct: 309 LVKTALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDPLLIKRSSSSGCPFSIK 368

Query: 361 GGT 363
           GG 
Sbjct: 369 GGV 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439795|ref|XP_002276631.1| PREDICTED: probable protein phosphatase 2C 38-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440043|ref|XP_004137794.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] gi|449483365|ref|XP_004156568.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255568468|ref|XP_002525208.1| protein phosphatase 2c, putative [Ricinus communis] gi|223535505|gb|EEF37174.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224100889|ref|XP_002312054.1| predicted protein [Populus trichocarpa] gi|222851874|gb|EEE89421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448757|ref|XP_002281610.1| PREDICTED: probable protein phosphatase 2C 38 [Vitis vinifera] gi|297736452|emb|CBI25323.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109644|ref|XP_002315265.1| predicted protein [Populus trichocarpa] gi|222864305|gb|EEF01436.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579574|ref|XP_002530628.1| protein phosphatase 2c, putative [Ricinus communis] gi|223529801|gb|EEF31736.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224133996|ref|XP_002327730.1| predicted protein [Populus trichocarpa] gi|118486583|gb|ABK95130.1| unknown [Populus trichocarpa] gi|222836815|gb|EEE75208.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297834066|ref|XP_002884915.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] gi|297330755|gb|EFH61174.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2091265385 AT3G12620 [Arabidopsis thalian 0.981 0.940 0.638 2.8e-128
TAIR|locus:2081770379 AT3G51370 [Arabidopsis thalian 0.975 0.949 0.609 2.7e-123
TAIR|locus:2151256370 AT5G02760 [Arabidopsis thalian 0.983 0.981 0.610 2.7e-123
TAIR|locus:2097238384 AT3G55050 [Arabidopsis thalian 0.970 0.932 0.602 5.7e-123
TAIR|locus:2156877385 AT5G66080 [Arabidopsis thalian 0.956 0.916 0.615 2e-120
TAIR|locus:2121234400 AT4G38520 [Arabidopsis thalian 0.964 0.89 0.610 2.3e-117
TAIR|locus:2086097384 AT3G17090 [Arabidopsis thalian 0.872 0.838 0.536 1.4e-94
TAIR|locus:2170234393 AT5G06750 [Arabidopsis thalian 0.894 0.839 0.498 1.1e-85
TAIR|locus:2118899380 AT4G33920 [Arabidopsis thalian 0.902 0.876 0.492 1.4e-85
TAIR|locus:2089293493 AT3G16560 [Arabidopsis thalian 0.655 0.490 0.341 2.4e-37
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 235/368 (63%), Positives = 290/368 (78%)

Query:     1 MVKPCW-----KSSYEDEDS-GRIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLES 54
             MV PCW     K  +   D+ GR DGLLWYKD G HV GEFSM+++QAN+++ED  +LES
Sbjct:    10 MVAPCWRRPSVKGDHSTRDANGRCDGLLWYKDSGNHVAGEFSMSVIQANNLLEDHSKLES 69

Query:    55 GPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAAT 114
             GP+S  +SGP  TFVGVYDGHGGPE ARF++ +LF N+++F SE+H MS NVI KAF AT
Sbjct:    70 GPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIRKFTSENHGMSANVITKAFLAT 129

Query:   115 EDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAI 174
             E+DFLSLV+++W  KP +ASVG+CCLVG+ICSGLLYIAN GDSRVVLGR ++  + V A+
Sbjct:   130 EEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLYIANAGDSRVVLGRLEKAFKIVKAV 189

Query:   175 QVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNRE 234
             Q+S EHNA++ESVR+EL SLHP+DPQIVVLKHKVWRVKGIIQVSR+IGDAYLK+AEFNRE
Sbjct:   190 QLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKKAEFNRE 249

Query:   235 PLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQNYPR 294
             PL +KFR+PE F +PI+ AEP+I VHK++PEDQFLIFASDGLWEHLSN+EAVDIV   PR
Sbjct:   250 PLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIVNTCPR 309

Query:   295 HGIXXXXXXXXXXXXXXXXXXXFSDLKKIDRGVRRHFHDDVSVVVIYLDPGLIDQSFNCS 354
             +GI                   +SDLKKIDRGVRRHFHDD++V+V++LD  L+ +S +  
Sbjct:   310 NGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRR 369

Query:   355 SPFSMRGG 362
                S+ GG
Sbjct:   370 PLLSISGG 377
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA
TAIR|locus:2081770 AT3G51370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151256 AT5G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097238 AT3G55050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121234 AT4G38520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086097 AT3G17090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170234 AT5G06750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118899 AT4G33920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089293 AT3G16560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5MFV5P2C34_ORYSI3, ., 1, ., 3, ., 1, 60.54060.89150.8657N/Ano
Q5Z8P0P2C60_ORYSJ3, ., 1, ., 3, ., 1, 60.66660.98100.9234yesno
Q9LHJ9P2C38_ARATH3, ., 1, ., 3, ., 1, 60.67930.98100.9402yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 1e-65
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 2e-64
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 1e-40
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 4e-25
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 2e-21
PTZ00224381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 9e-10
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  208 bits (531), Expect = 1e-65
 Identities = 97/315 (30%), Positives = 139/315 (44%), Gaps = 65/315 (20%)

Query: 32  YGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQN 91
           +              ED   ++        +   G   GV+DGHGG     F S  L + 
Sbjct: 1   FSAGVSDKGGDRKTNEDAVVIKPN-----LNNEDGGLFGVFDGHGGHAAGEFASKLLVEE 55

Query: 92  LKRFASEH----HEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSG 147
           L     E      E  E  +RKAF   +++ L   +     +P+ A  G+  +V LI   
Sbjct: 56  LLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQ----DEPDDARSGTTAVVALIRGN 111

Query: 148 LLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHK 207
            LY+ANVGDSR VL R         A+Q++ +H    E  R+ +                
Sbjct: 112 KLYVANVGDSRAVLCRNGE------AVQLTKDHKPVNEEERERIEKAGGRVSN------- 158

Query: 208 VWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQ 267
             RV G++ V+RA+GD  LK                     P +SAEP + V KL  +D 
Sbjct: 159 -GRVPGVLAVTRALGDFDLK---------------------PGVSAEPDVTVVKLTEDDD 196

Query: 268 FLIFASDGLWEHLSNEEAVDIVQNYPRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGV 327
           FLI ASDGLW+ LSN+EAVDIV++           K  L+EAA++       L  +D  +
Sbjct: 197 FLILASDGLWDVLSNQEAVDIVRSELA--------KEDLQEAAQE-------L--VDLAL 239

Query: 328 RRHFHDDVSVVVIYL 342
           RR  HD+++VVV+ L
Sbjct: 240 RRGSHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PTZ00224381 protein phosphatase 2C; Provisional 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.96
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.93
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.81
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.77
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.74
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.57
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.48
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.26
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-55  Score=410.98  Aligned_cols=302  Identities=54%  Similarity=0.866  Sum_probs=270.5

Q ss_pred             CCCCeeeccCCCCCccCceeeEEecCCCCCccchhhccCCCCCCCC-CCCcEEEEEecCCChHHHHHHHHHHHHHHHHHh
Q 017598           17 RIDGLLWYKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNS-GPHGTFVGVYDGHGGPETARFISDNLFQNLKRF   95 (369)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ED~~~~~~~~~~~~~~-~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~   95 (369)
                      +.++..|+++...+..|.++++..+.+..++|...+..+....... ++++.|+||||||||..+++|++++|..++...
T Consensus        49 ~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~  128 (390)
T KOG0700|consen   49 SVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARE  128 (390)
T ss_pred             CcccccccccccccCcccchhhhhhhhhhhhhcCCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999876556655555544322222 568899999999999999999999999988832


Q ss_pred             H------------hh--------------------c-ccccHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccceEEe
Q 017598           96 A------------SE--------------------H-HEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVG  142 (369)
Q Consensus        96 ~------------~~--------------------~-~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~~~  142 (369)
                      +            .+                    . .....++|.+||.+++++|...+.+.+...++...+|+||+++
T Consensus       129 L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~  208 (390)
T KOG0700|consen  129 LQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVG  208 (390)
T ss_pred             hhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEE
Confidence            1            11                    1 3567889999999999999999988889999999999999999


Q ss_pred             EEeCCeEEEEEeCCceEEEEEecCCCCceeEEEcCCCCCCCChHHHHHHHhhCCCCCCeEEEecceeeccCccccccccc
Q 017598          143 LICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIG  222 (369)
Q Consensus       143 ~i~~~~l~vanvGDSRa~l~r~~~~~~~~~~~~Lt~DH~~~~~~e~~ri~~~~~~~~~~~~~~~~~~rv~g~l~vtRalG  222 (369)
                      +|.+..|||||+|||||+|.+..+....+.++|||.||+.+++.|++||...||++..+++.++  ||++|.|.+|||||
T Consensus       209 ~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~vsRAfG  286 (390)
T KOG0700|consen  209 LIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQVSRAFG  286 (390)
T ss_pred             EEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeecc--ceeeEEEEeeeecc
Confidence            9999999999999999999888755555799999999999999999999999999999999988  79999999999999


Q ss_pred             ccccccccccCcccccccCCCCCCCCCcEEeeeeEEEEEcCCCCeEEEEEcCCCCCccCHHHHHHHHhc-----cCcchH
Q 017598          223 DAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQN-----YPRHGI  297 (369)
Q Consensus       223 d~~~k~~~~~~~~~~~~~~~~~~~~~p~v~~~pdi~~~~l~~~D~fLvLaSDGlwd~l~~~ei~~iv~~-----~~~~~~  297 (369)
                      |.+||+..++.+++...|..|..+++|+|+++|.++.++|.+.|.||||||||||++|+++|++++|..     .+.+.+
T Consensus       287 d~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~  366 (390)
T KOG0700|consen  287 DGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNP  366 (390)
T ss_pred             ceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998     678899


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccc
Q 017598          298 ARRLVKAALKEAAKKREMRFSDL  320 (369)
Q Consensus       298 a~~L~~~A~~~~~~~~~~~~~~~  320 (369)
                      |+.|++.|+..+++++.|+++++
T Consensus       367 A~hLIr~aL~~aakk~~~r~s~l  389 (390)
T KOG0700|consen  367 ATHLIRHALGRAAKKRGMRLSDL  389 (390)
T ss_pred             HHHHHHHHHhhhhhhccccHhhc
Confidence            99999999999998877776543

>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 3e-17
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 3e-17
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 3e-17
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 3e-17
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 3e-17
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 4e-17
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 8e-17
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 8e-17
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 1e-16
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 2e-16
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 2e-16
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 4e-16
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 2e-14
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 3e-10
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 6e-10
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 6e-10
2pop_A353 The Crystal Structure Of Tab1 And Bir1 Complex Leng 4e-08
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 8e-08
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 8e-08
2pom_A372 Tab1 With Manganese Ion Length = 372 6e-06
2j4o_A401 Structure Of Tab1 Length = 401 6e-06
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 68/262 (25%)
Query: 57  LSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNL------------KRFASEHHEMS- 103
           +S S +   G F GVYDGHGG + A +  D L   L            KR   E  ++  
Sbjct: 53  MSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQW 112
Query: 104 ---------------ENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGL 148
                          E  I +A   + D  L  V  E        +VGS  +V L+CS  
Sbjct: 113 DKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASE--------TVGSTAVVALVCSSH 164
Query: 149 LYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKV 208
           + ++N GDSR VL R +       A+ +S++H  + E   DE   +     +  V++ + 
Sbjct: 165 IVVSNCGDSRAVLFRGK------EAMPLSVDHKPDRE---DEYARIENAGGK--VIQWQG 213
Query: 209 WRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQF 268
            RV G++ +SR+IGD YLK                     P +  EP +       ED+ 
Sbjct: 214 ARVFGVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDEC 252
Query: 269 LIFASDGLWEHLSNEEAVDIVQ 290
           LI ASDGLW+ ++N+E  +I +
Sbjct: 253 LILASDGLWDVMNNQEVCEIAR 274
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex Length = 353 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2POM|A Chain A, Tab1 With Manganese Ion Length = 372 Back     alignment and structure
>pdb|2J4O|A Chain A, Structure Of Tab1 Length = 401 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 7e-87
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 9e-82
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 4e-06
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 6e-56
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 2e-55
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 6e-55
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-54
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 2e-54
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 3e-54
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 5e-54
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 6e-53
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 3e-52
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 3e-42
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 5e-33
1txo_A237 Putative bacterial enzyme; serine/threonine protei 2e-08
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 1e-07
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 5e-07
3rnr_A211 Stage II sporulation E family protein; structural 9e-05
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
 Score =  267 bits (683), Expect = 7e-87
 Identities = 71/365 (19%), Positives = 120/365 (32%), Gaps = 62/365 (16%)

Query: 41  QANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHH 100
             +   ED             S  +    GV++G+ G     F++  L   L        
Sbjct: 44  TESHPPEDSWL-------KFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAE 96

Query: 101 EMSENV---IRKAFAATEDDFLSLVKKEWPSKPNMASV---------------------- 135
               +V   + +AF   E  FL  +      K ++ S                       
Sbjct: 97  HAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLK 156

Query: 136 --------GSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESV 187
                   G+  +V ++ +  LY+ANVG +R +L +       +   Q++++H    E  
Sbjct: 157 TLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCK--STVDGLQVTQLNVDHTTENEDE 214

Query: 188 RDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFE 247
              L  L     +I      V  + G  + +R IGD  +K    + + L          +
Sbjct: 215 LFRLSQLGLDAGKIKQ----VGIICG-QESTRRIGDYKVKYGYTDIDLL-------SAAK 262

Query: 248 EPIISAEPSIL-VHKLYPEDQFLIFASDGLWEHLSNEEAVDIVQ----NYPRHGIARRLV 302
              I AEP I     L     FL+  S+GL++ L                     A++  
Sbjct: 263 SKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTS 322

Query: 303 KAALKEAAKKREMRFSDLKKIDRGVRRHF---HDDVSVVVIYLDPGLIDQSFNCSSPFSM 359
             A+ +A   R  R         G R  F   H+D++++V      L + S    SP   
Sbjct: 323 LDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLGEMSQPTPSPAPA 382

Query: 360 RGGTG 364
            GG  
Sbjct: 383 AGGRV 387
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
3rnr_A211 Stage II sporulation E family protein; structural 100.0
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.84
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.8
3f79_A255 Probable two-component response regulator; adaptor 99.68
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.65
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.13
3eq2_A394 Probable two-component response regulator; adaptor 98.48
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=100.00  E-value=1.8e-49  Score=395.25  Aligned_cols=306  Identities=27%  Similarity=0.423  Sum_probs=214.6

Q ss_pred             eeeEEecCCCCCccchhhccCCCCCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHhH------hh----------
Q 017598           35 FSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFA------SE----------   98 (369)
Q Consensus        35 ~s~~~~~~~~~~ED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~------~~----------   98 (369)
                      |.....+.|..|||++.+....      ..+..||||||||||+.+|++|+++++..|.+.+      ..          
T Consensus        41 ~~s~~g~~R~~nED~~~v~~~~------~~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~  114 (467)
T 2pnq_A           41 FDSNRLPANAPIEDRRSATTCL------QTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA  114 (467)
T ss_dssp             EEEEEECCSSSCCEEEEEEEES------SSSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----
T ss_pred             EEeeccCCCCCCCCceeeeecc------CCCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhcccc
Confidence            3444445688999999875422      1256899999999999999999999998886431      00          


Q ss_pred             ------------------------------------------cccccHHHHHHHHHHHHHHHHHHHHhhCCC------CC
Q 017598           99 ------------------------------------------HHEMSENVIRKAFAATEDDFLSLVKKEWPS------KP  130 (369)
Q Consensus        99 ------------------------------------------~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~------~~  130 (369)
                                                                ....+.++|+++|.++|+.|..........      ..
T Consensus       115 ~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~  194 (467)
T 2pnq_A          115 LLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVL  194 (467)
T ss_dssp             CCCCEEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhhcchhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence                                                      011567899999999999987654321000      11


Q ss_pred             CCcccccceEEeEEeCCeEEEEEeCCceEEEEEecCCCCceeEEEcCCCCCCCChHHHHHHHhhCCCCCCeEEEecceee
Q 017598          131 NMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWR  210 (369)
Q Consensus       131 ~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~~~~~~~~Lt~DH~~~~~~e~~ri~~~~~~~~~~~~~~~~~~r  210 (369)
                      ....+|||+++++|.+++||+|||||||||+++.+ .++.+.+++||.||++.++.|++||.+.|+.........+  .|
T Consensus       195 ~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~-~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~--~R  271 (467)
T 2pnq_A          195 RVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQE-EDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQ--DR  271 (467)
T ss_dssp             HHHHSEECEEEEEEETTEEEEEEESSCEEEEEEEC-TTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSS--SS
T ss_pred             cCCCCcceEEEEEEECCEEEEEECCCceEEEEEec-CCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEec--Cc
Confidence            23469999999999999999999999999999963 2345689999999999999999999999864321111122  28


Q ss_pred             ccCcccccccccccccccccccC------------cccccccCCCCCCCCCcEEeeeeEEEEEcCCCCeEEEEEcCCCCC
Q 017598          211 VKGIIQVSRAIGDAYLKRAEFNR------------EPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWE  278 (369)
Q Consensus       211 v~g~l~vtRalGd~~~k~~~~~~------------~~~~~~~~~~~~~~~p~v~~~pdi~~~~l~~~D~fLvLaSDGlwd  278 (369)
                      ++|.+++||||||..||......            ......+..+....+|+|+++|++..++|.++|.|||||||||||
T Consensus       272 v~G~l~vtRAlGd~~~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd  351 (467)
T 2pnq_A          272 LLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWE  351 (467)
T ss_dssp             BTTTBSSSBCEECGGGTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHT
T ss_pred             cccccccchhcCchhhcccchhhhhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccc
Confidence            99999999999999988531000            000112333445567889999999999999999999999999999


Q ss_pred             ccCHHHHHHHHhccC-------c------------------------------chHHHHHHHHHHHHH--HHhhhhhhcc
Q 017598          279 HLSNEEAVDIVQNYP-------R------------------------------HGIARRLVKAALKEA--AKKREMRFSD  319 (369)
Q Consensus       279 ~l~~~ei~~iv~~~~-------~------------------------------~~~a~~L~~~A~~~~--~~~~~~~~~~  319 (369)
                      +|+++|+++++....       +                              +.+|..|++.|+..+  ++.+......
T Consensus       352 ~ls~~eiv~iv~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~  431 (467)
T 2pnq_A          352 TMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSK  431 (467)
T ss_dssp             TSCHHHHHHHHHHHHTTCSSCC-------------------------------CCHHHHHHHHHHC--------------
T ss_pred             cCChHHHHHHHHHHHhhccccCcccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHh
Confidence            999999999997641       2                              567899999999875  2233445567


Q ss_pred             ccccccCCCCCcCCceEEEEEEcCCCcccC
Q 017598          320 LKKIDRGVRRHFHDDVSVVVIYLDPGLIDQ  349 (369)
Q Consensus       320 ~~~~~~~~~rg~~DNiTvivv~l~~~~~~~  349 (369)
                      +..+|.+.+|.++||||||||+|+.+....
T Consensus       432 ll~~~~~~~R~~~DdITViVv~~~~~~~~~  461 (467)
T 2pnq_A          432 MLSLPEELARMYRDDITIIVVQFNSHVVGA  461 (467)
T ss_dssp             -----------CCSCEEEEEEEECHHHHHH
T ss_pred             hhcCCccccccCCCCcEEEEEEeCchHhhh
Confidence            888999999999999999999998765543
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 8e-32
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-16
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 8e-32
 Identities = 59/307 (19%), Positives = 103/307 (33%), Gaps = 57/307 (18%)

Query: 46  MEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSEN 105
           MED        +   +     +F  VYDGH G + A++  ++L  ++             
Sbjct: 35  MEDAHTAV---IGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAP 91

Query: 106 VIRKAFAATEDDFLSLVKKEW---PSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLG 162
            +          FL + +        K      GS  +  LI     Y  N GDSR +L 
Sbjct: 92  SVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLC 151

Query: 163 RAQRGTREVSAIQVSMEHNANIESVRDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIG 222
           R ++          + +H  +    ++ + +              + RV G + VSRA+G
Sbjct: 152 RNRKV------HFFTQDHKPSNPLEKERIQNAGG--------SVMIQRVNGSLAVSRALG 197

Query: 223 DAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLYPEDQFLIFASDGLWEHLSN 282
           D   K               PE  +           + +   +DQF+I A DG+W+ + N
Sbjct: 198 DFDYKCVHGKGPTEQLVSPEPEVHD-----------IERSEEDDQFIILACDGIWDVMGN 246

Query: 283 EEAVDIVQNYPRHG-----IARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSV 337
           EE  D V++          +   +V   L                      +   D++SV
Sbjct: 247 EELCDFVRSRLEVTDDLEKVCNEVVDTCL---------------------YKGSRDNMSV 285

Query: 338 VVIYLDP 344
           ++I    
Sbjct: 286 ILICFPN 292
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=372.84  Aligned_cols=257  Identities=26%  Similarity=0.387  Sum_probs=208.2

Q ss_pred             eeEEecC-CCCCccchhhccCCCCCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHhHhhcc-------cccHHHH
Q 017598           36 SMALVQA-NSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHH-------EMSENVI  107 (369)
Q Consensus        36 s~~~~~~-~~~~ED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~~~-------~~~~~~l  107 (369)
                      +.+.+|| |+.|||++.+..+.   ..+.++..||||||||||+.+|++|++.+++.|.+......       ..+.++|
T Consensus        24 g~~s~~G~R~~~ED~~~~~~~~---~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~al  100 (295)
T d1a6qa2          24 GLSSMQGWRVEMEDAHTAVIGL---PSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGI  100 (295)
T ss_dssp             EEEEEEETSSSCCEEEEEEEEE---TTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHH
T ss_pred             EEEeCccCCCcccCeeEEEccc---CCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHH
Confidence            4455554 66999999876433   22334678999999999999999999999999986443221       2456788


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCcccccceEEeEEeCCeEEEEEeCCceEEEEEecCCCCceeEEEcCCCCCCCChHH
Q 017598          108 RKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLYIANVGDSRVVLGRAQRGTREVSAIQVSMEHNANIESV  187 (369)
Q Consensus       108 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~~~~~~~~Lt~DH~~~~~~e  187 (369)
                      +++|.++++.+......    ......+|||++++++.++++|+|||||||+|+++++      .+++||.||++.++.|
T Consensus       101 ~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~------~~~~lT~dH~~~~~~E  170 (295)
T d1a6qa2         101 RTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR------KVHFFTQDHKPSNPLE  170 (295)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT------EEEEECCCCCTTSHHH
T ss_pred             HHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc------cceeeccccCcccHHH
Confidence            88898888887655433    2334579999999999999999999999999999987      9999999999999999


Q ss_pred             HHHHHhhCCCCCCeEEEecceeeccCcccccccccccccccccccCcccccccCCCCCCCCCcEEeeeeEEEEEcC-CCC
Q 017598          188 RDELHSLHPHDPQIVVLKHKVWRVKGIIQVSRAIGDAYLKRAEFNREPLASKFRLPEPFEEPIISAEPSILVHKLY-PED  266 (369)
Q Consensus       188 ~~ri~~~~~~~~~~~~~~~~~~rv~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~p~v~~~pdi~~~~l~-~~D  266 (369)
                      ++||...++...        ..|++|.|++||+|||..+|..+.            ..+..|+|+++|++..+.+. ++|
T Consensus       171 ~~Ri~~~gg~v~--------~~r~~g~l~~tRa~Gd~~~k~~~~------------~~~~~~~v~~~Pdi~~~~~~~~~~  230 (295)
T d1a6qa2         171 KERIQNAGGSVM--------IQRVNGSLAVSRALGDFDYKCVHG------------KGPTEQLVSPEPEVHDIERSEEDD  230 (295)
T ss_dssp             HHHHHHTTCCEE--------TTEETTTBSCSBCEECGGGSCCTT------------CCGGGSSSBCCCEEEEEECCTTTE
T ss_pred             HhhHhhcCCccc--------ccccCCceeeeeccCcHHhhhccc------------cCcccccccccccceEEEeecccc
Confidence            999999864321        238999999999999999986542            12245679999999999986 567


Q ss_pred             eEEEEEcCCCCCccCHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHHhhhhhhccccccccCCCCCcCCceEEEEEE
Q 017598          267 QFLIFASDGLWEHLSNEEAVDIVQNY-----PRHGIARRLVKAALKEAAKKREMRFSDLKKIDRGVRRHFHDDVSVVVIY  341 (369)
Q Consensus       267 ~fLvLaSDGlwd~l~~~ei~~iv~~~-----~~~~~a~~L~~~A~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~  341 (369)
                      .|||||||||||+|+++||+++++..     .++.+|++|++.|+..                     ++.||||||||+
T Consensus       231 ~flvL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~---------------------gs~DNiTvivv~  289 (295)
T d1a6qa2         231 QFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYK---------------------GSRDNMSVILIC  289 (295)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT---------------------TCCSCEEEEEEE
T ss_pred             eeEeeecCcccccCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---------------------CCCCCeEEEEEe
Confidence            89999999999999999999999763     3778899999999764                     489999999999


Q ss_pred             cCCCc
Q 017598          342 LDPGL  346 (369)
Q Consensus       342 l~~~~  346 (369)
                      |+..+
T Consensus       290 ~~~~~  294 (295)
T d1a6qa2         290 FPNAP  294 (295)
T ss_dssp             CTTSC
T ss_pred             ccCCC
Confidence            97643
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure