Citrus Sinensis ID: 017629

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
cccccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEcccccEEEEEEEccccccccccc
ccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEcccccccEEEEEHHccccccccc
MAAKKLSETFSKSLIEEVgrwgcmkqtGVSLRYMMefgskptdknlLISAQFLHKELPIRIARRAIEletlpyglsekpaVLKVRDWYLDSfrdlrsfpdirstsdeRDFTQMIKAIKVRHNNVVPMMALGLQQLKkemdpkivYEDLDEIHQFLDRFYMSRIGIRMLIGQhvelhnpnppphcigyidtkmspvQVARNASEHARCVCLreygsapdfniygdpsftfpyvpshLHLMVFELVKNSLRAVEERYmdsdkvappiRIIVAdgledvtikvsdegggiprsglpKIFTYLYStarnpldentdlaadkgtmagygyglpiSRLYARYFGGDLQIISMEGYGTDAYLHLsrlgdsqeplp
maakklseTFSKSlieevgrwgcmkQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELetlpyglsekpavLKVRDWYLDSfrdlrsfpdirstsderdFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERymdsdkvappiRIIVADGLEDVTIKVsdegggiprsglPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLsrlgdsqeplp
MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
*************LIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIR*****RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS**********
*************LIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST**********************YGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG*******
********TFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL********
***KKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR***********DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q9SBJ1366 [Pyruvate dehydrogenase ( yes no 0.989 0.994 0.824 0.0
P91622413 [Pyruvate dehydrogenase [ yes no 0.904 0.806 0.417 1e-64
Q9P6P9425 [Pyruvate dehydrogenase [ yes no 0.687 0.595 0.479 2e-63
Q64536407 [Pyruvate dehydrogenase [ yes no 0.888 0.803 0.428 5e-63
Q9JK42407 [Pyruvate dehydrogenase [ yes no 0.888 0.803 0.422 6e-63
Q15119407 [Pyruvate dehydrogenase [ yes no 0.888 0.803 0.416 7e-63
Q15120406 [Pyruvate dehydrogenase [ no no 0.926 0.839 0.409 6e-62
Q922H2415 [Pyruvate dehydrogenase [ no no 0.926 0.821 0.406 2e-61
Q16654411 [Pyruvate dehydrogenase [ no no 0.923 0.827 0.393 3e-61
Q63065434 [Pyruvate dehydrogenase [ no no 0.888 0.753 0.404 3e-60
>sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1 Back     alignment and function desciption
 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/370 (82%), Positives = 340/370 (91%), Gaps = 6/370 (1%)

Query: 1   MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
           MA KK  E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct: 1   MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60

Query: 61  IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
           +ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct: 61  VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120

Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
           HNNVVPMMALG+ QLKK M+      +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176

Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
           P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct: 177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236

Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
           +ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLY
Sbjct: 237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLY 296

Query: 301 STARNPLDENTDLA-AD-KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 358
           STARNPL+E+ DL  AD   TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS
Sbjct: 297 STARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 356

Query: 359 RLGDSQEPLP 368
           RLGDSQEPLP
Sbjct: 357 RLGDSQEPLP 366
Serine protein kinase that inhibits the mitochondrial pyruvate dehydrogenase (PDH) complex (mtPDC) by phosphorylation of the E1 alpha subunit on Ser residues, thus contributing to the regulation of glucose metabolism.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2
>sp|P91622|PDK_DROME [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2 Back     alignment and function description
>sp|Q9P6P9|PDK_SCHPO [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.11c PE=3 SV=1 Back     alignment and function description
>sp|Q64536|PDK2_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JK42|PDK2_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=2 Back     alignment and function description
>sp|Q15119|PDK2_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2 Back     alignment and function description
>sp|Q15120|PDK3_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1 Back     alignment and function description
>sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1 Back     alignment and function description
>sp|Q16654|PDK4_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1 Back     alignment and function description
>sp|Q63065|PDK1_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
356556464369 PREDICTED: Pyruvate dehydrogenase [lipoa 1.0 0.997 0.883 0.0
359807389369 Pyruvate dehydrogenase [lipoamide] kinas 1.0 0.997 0.872 0.0
255638678369 unknown [Glycine max] 1.0 0.997 0.880 0.0
157922335369 mitochondrial pyruvate dehydrogenase kin 1.0 0.997 0.878 0.0
224106976369 predicted protein [Populus trichocarpa] 1.0 0.997 0.861 0.0
388497260369 unknown [Lotus japonicus] 1.0 0.997 0.859 0.0
225432171369 PREDICTED: [Pyruvate dehydrogenase [lipo 1.0 0.997 0.850 0.0
449460345370 PREDICTED: Pyruvate dehydrogenase (acety 1.0 0.994 0.854 0.0
449485034370 PREDICTED: Pyruvate dehydrogenase (acety 1.0 0.994 0.851 0.0
45720178367 pyruvate dehydrogenase kinase [Cicer ari 0.980 0.983 0.856 0.0
>gi|356556464|ref|XP_003546545.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850513|gb|AAT02656.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Glycine max] Back     alignment and taxonomy information
 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/369 (88%), Positives = 347/369 (94%), Gaps = 1/369 (0%)

Query: 1   MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
           MAAKK  ETFSKSLIEEV RWGC+KQTGVSLRYMMEFGSKPTDKNLLISAQFLHKEL IR
Sbjct: 1   MAAKKACETFSKSLIEEVHRWGCLKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELAIR 60

Query: 61  IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
           IARRAIELE LPYGLS+KPAVLKVRDWY+DSFRDLR+FP+I++ +DE+DFT+MIKAIKVR
Sbjct: 61  IARRAIELENLPYGLSQKPAVLKVRDWYVDSFRDLRAFPNIKNVNDEQDFTEMIKAIKVR 120

Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
           HNNVVP MALG+QQLKK MDPKIVYEDL EIHQFLDRFYMSRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPTMALGVQQLKKRMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180

Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
           PPH +GYI TKMSPV+VARNASE AR +C REYGSAPD +IYGDP FTFPYVP+HLHLMV
Sbjct: 181 PPHVVGYIHTKMSPVEVARNASEDARAICCREYGSAPDVHIYGDPDFTFPYVPAHLHLMV 240

Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
           FELVKNSLRAV+ER+MDSDKVAPPIRIIVADG+EDVTIKVSDEGGGI RSGLPKIFTYLY
Sbjct: 241 FELVKNSLRAVQERFMDSDKVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPKIFTYLY 300

Query: 301 STARNPLDENTDLA-ADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359
           STARNPLDE++DL   D  TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR
Sbjct: 301 STARNPLDEHSDLGIGDNVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 360

Query: 360 LGDSQEPLP 368
           LGDSQEPLP
Sbjct: 361 LGDSQEPLP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|359807389|ref|NP_001241640.1| Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max] gi|46850511|gb|AAT02655.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Glycine max] gi|157922331|gb|ABW03158.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922333|gb|ABW03159.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gi|157922339|gb|ABW03162.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Cicer arietinum] gi|255639356|gb|ACU19974.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255638678|gb|ACU19644.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|157922335|gb|ABW03160.1| mitochondrial pyruvate dehydrogenase kinase isoform 2 [Pisum sativum] Back     alignment and taxonomy information
>gi|224106976|ref|XP_002314330.1| predicted protein [Populus trichocarpa] gi|222863370|gb|EEF00501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388497260|gb|AFK36696.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225432171|ref|XP_002267959.1| PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial [Vitis vinifera] gi|297736808|emb|CBI26009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460345|ref|XP_004147906.1| PREDICTED: Pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485034|ref|XP_004157053.1| PREDICTED: Pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|45720178|emb|CAG14980.1| pyruvate dehydrogenase kinase [Cicer arietinum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2081031366 PDK "AT3G06483" [Arabidopsis t 0.989 0.994 0.824 2.3e-165
ASPGD|ASPL0000007784405 AN6207 [Emericella nidulans (t 0.766 0.696 0.494 4.5e-82
CGD|CAL0003985511 PDK2 [Candida albicans (taxid: 0.301 0.217 0.637 1e-78
UNIPROTKB|Q5A426511 CaO19.7281 "Potential histidin 0.301 0.217 0.637 1e-78
POMBASE|SPAC644.11c425 pkp1 "mitochondrial pyruvate d 0.687 0.595 0.486 6.8e-71
ZFIN|ZDB-GENE-091204-402405 pdk1 "pyruvate dehydrogenase k 0.956 0.869 0.419 9.4e-66
FB|FBgn0017558413 Pdk "Pyruvate dehydrogenase ki 0.904 0.806 0.417 1.8e-62
RGD|69428407 Pdk2 "pyruvate dehydrogenase k 0.888 0.803 0.430 2.1e-61
UNIPROTKB|F1LMM8407 Pdk2 "[Pyruvate dehydrogenase 0.888 0.803 0.428 4.3e-61
UNIPROTKB|Q15119407 PDK2 "[Pyruvate dehydrogenase 0.888 0.803 0.419 5.5e-61
TAIR|locus:2081031 PDK "AT3G06483" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
 Identities = 305/370 (82%), Positives = 340/370 (91%)

Query:     1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
             MA KK  E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct:     1 MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60

Query:    61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
             +ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct:    61 VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120

Query:   121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
             HNNVVPMMALG+ QLKK M+      +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct:   121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176

Query:   181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
             P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct:   177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236

Query:   241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
             +ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLY
Sbjct:   237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLY 296

Query:   301 STARNPLDENTDLA-ADKG-TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 358
             STARNPL+E+ DL  AD   TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS
Sbjct:   297 STARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 356

Query:   359 RLGDSQEPLP 368
             RLGDSQEPLP
Sbjct:   357 RLGDSQEPLP 366
GO:0005524 "ATP binding" evidence=ISS;IDA
GO:0005739 "mitochondrion" evidence=ISM;NAS
GO:0004740 "pyruvate dehydrogenase (acetyl-transferring) kinase activity" evidence=IMP
GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
ASPGD|ASPL0000007784 AN6207 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0003985 PDK2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A426 CaO19.7281 "Potential histidine kinase-like ATPase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPAC644.11c pkp1 "mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-402 pdk1 "pyruvate dehydrogenase kinase, isozyme 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0017558 Pdk "Pyruvate dehydrogenase kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|69428 Pdk2 "pyruvate dehydrogenase kinase, isozyme 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMM8 Pdk2 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15119 PDK2 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JK42PDK2_MOUSE2, ., 7, ., 1, 1, ., 20.42250.88850.8034yesno
P91622PDK_DROME2, ., 7, ., 1, 1, ., 20.41760.90480.8062yesno
Q9SBJ1PDK_ARATH2, ., 7, ., 1, 1, ., 20.82430.98910.9945yesno
Q64536PDK2_RAT2, ., 7, ., 1, 1, ., 20.42810.88850.8034yesno
Q15119PDK2_HUMAN2, ., 7, ., 1, 1, ., 20.41690.88850.8034yesno
Q02332PDHK2_CAEEL2, ., 7, ., 1, 1, ., 20.37560.95920.8802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.20.824
3rd Layer2.7.13.30.737
3rd Layer2.7.110.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
pfam10436163 pfam10436, BCDHK_Adom3, Mitochondrial branched-cha 1e-74
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-19
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 6e-19
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-18
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 3e-11
COG4191603 COG4191, COG4191, Signal transduction histidine ki 7e-07
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 2e-06
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 5e-05
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 6e-05
COG5002459 COG5002, VicK, Signal transduction histidine kinas 9e-05
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 1e-04
COG1389 538 COG1389, COG1389, DNA topoisomerase VI, subunit B 6e-04
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 0.001
PRK04184 535 PRK04184, PRK04184, DNA topoisomerase VI subunit B 0.001
>gnl|CDD|220754 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Back     alignment and domain information 
 Score =  228 bits (583), Expect = 1e-74
 Identities = 84/168 (50%), Positives = 111/168 (66%), Gaps = 9/168 (5%)

Query: 27  TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRD 86
           T +SLR +++FG  PT+K LL SAQFL +ELP+R+A R  EL+ LPYGL   P++L+V +
Sbjct: 1   TPLSLRQLLQFGRNPTEKTLLKSAQFLREELPVRLAHRIRELQLLPYGLVANPSILQVYE 60

Query: 87  WYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYE 146
           WYL SF +LRSFP  ++  D   F  +++ I  RHNNVVP +A G+ +LK  +DP     
Sbjct: 61  WYLQSFEELRSFPPPKTLEDNEKFCDLLRDILDRHNNVVPTLAQGVLELKDLLDP----V 116

Query: 147 DLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDT 190
             DEI  FLDRF  SRIGIRML  QH+ L    H+P  P + +G IDT
Sbjct: 117 PEDEIQYFLDRFLRSRIGIRMLAEQHLALTENTHSPKHPDY-VGIIDT 163

Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal. Length = 163
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
COG4191603 Signal transduction histidine kinase regulating C4 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 99.97
PRK10841 924 hybrid sensory kinase in two-component regulatory 99.97
PRK11091 779 aerobic respiration control sensor protein ArcB; P 99.97
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.97
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.97
PRK10815485 sensor protein PhoQ; Provisional 99.97
PRK10604433 sensor protein RstB; Provisional 99.97
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 99.97
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 99.97
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.97
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.97
PRK10364457 sensor protein ZraS; Provisional 99.97
PRK10490895 sensor protein KdpD; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
PRK13837 828 two-component VirA-like sensor kinase; Provisional 99.96
COG5000712 NtrY Signal transduction histidine kinase involved 99.96
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.96
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.96
COG4251750 Bacteriophytochrome (light-regulated signal transd 99.96
PRK09835482 sensor kinase CusS; Provisional 99.96
PRK11100475 sensory histidine kinase CreC; Provisional 99.96
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.96
PRK10337449 sensor protein QseC; Provisional 99.96
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 99.96
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.95
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.95
PRK09470461 cpxA two-component sensor protein; Provisional 99.95
PRK11360607 sensory histidine kinase AtoS; Provisional 99.95
PRK09467435 envZ osmolarity sensor protein; Provisional 99.95
PRK13557 540 histidine kinase; Provisional 99.94
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.93
COG4192673 Signal transduction histidine kinase regulating ph 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.91
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.91
COG3290537 CitA Signal transduction histidine kinase regulati 99.89
PRK13560807 hypothetical protein; Provisional 99.89
PRK11644495 sensory histidine kinase UhpB; Provisional 99.89
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.88
PF10436164 BCDHK_Adom3: Mitochondrial branched-chain alpha-ke 99.86
PRK13559361 hypothetical protein; Provisional 99.82
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.8
PRK10547 670 chemotaxis protein CheA; Provisional 99.8
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.8
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 99.73
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.64
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.61
COG4585365 Signal transduction histidine kinase [Signal trans 99.61
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.55
COG3920221 Signal transduction histidine kinase [Signal trans 99.52
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.52
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.5
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.5
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.48
PRK03660146 anti-sigma F factor; Provisional 99.44
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.43
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.41
PRK04069161 serine-protein kinase RsbW; Provisional 99.27
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.26
PF14501100 HATPase_c_5: GHKL domain 99.21
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 99.18
COG2972456 Predicted signal transduction protein with a C-ter 99.15
COG4564459 Signal transduction histidine kinase [Signal trans 99.14
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.85
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.78
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 98.53
KOG0519 786 consensus Sensory transduction histidine kinase [S 98.49
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 98.49
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 98.06
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.91
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 97.81
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 97.81
PRK05218 613 heat shock protein 90; Provisional 97.18
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 97.06
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 97.04
PRK05644 638 gyrB DNA gyrase subunit B; Validated 96.99
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 96.93
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 96.76
PRK14083 601 HSP90 family protein; Provisional 96.63
PTZ00130 814 heat shock protein 90; Provisional 96.57
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 96.56
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 96.46
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 96.42
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 96.42
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 96.07
COG5381184 Uncharacterized protein conserved in bacteria [Fun 95.95
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 95.51
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 94.76
PF10090182 DUF2328: Uncharacterized protein conserved in bact 94.72
PLN03237 1465 DNA topoisomerase 2; Provisional 94.02
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 93.79
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 93.66
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 93.4
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 93.31
COG5385214 Uncharacterized protein conserved in bacteria [Fun 93.31
PLN03128 1135 DNA topoisomerase 2; Provisional 92.07
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 91.76
PTZ00109 903 DNA gyrase subunit b; Provisional 91.54
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-45  Score=326.02  Aligned_cols=348  Identities=43%  Similarity=0.763  Sum_probs=313.3

Q ss_pred             HHHHHHHhhhcCCCCCcCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017629           13 SLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF   92 (368)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~   92 (368)
                      .+.+.|..|+.+++.|+|+.|+++|+.+++......+..|+++||+.|+++++++++.+|+.+..||++..+.+||.++|
T Consensus        37 ~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~sf  116 (414)
T KOG0787|consen   37 SLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRSF  116 (414)
T ss_pred             chHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHHH
Confidence            57899999999999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCC-chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHH
Q 017629           93 RDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQ  171 (368)
Q Consensus        93 ~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~  171 (368)
                      +++.+...+.. .++..+|+..+..+..++...+..|+.|+.|++.....   -.....++.+|++++++++++|+|+++
T Consensus       117 e~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~d---p~~~~~iqyFLdr~y~sRIsiRMLv~q  193 (414)
T KOG0787|consen  117 EDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDGD---PVTEKNIQYFLDRFYMSRISIRMLVNQ  193 (414)
T ss_pred             HHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988887 88889999999999999999999999999998866551   112568999999999999999999999


Q ss_pred             HhhhcC--CCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceee-cchhhHHHHHHHHHHHHH
Q 017629          172 HVELHN--PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNSL  248 (368)
Q Consensus       172 ~l~l~~--~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~d~~~l~~vl~nLl~NAi  248 (368)
                      ++.+..  .......+|.....|++.++|+++.+.++.+|..+|...+++.++++....+. +.|.+|..++.+|++||.
T Consensus       194 h~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNam  273 (414)
T KOG0787|consen  194 HLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNAM  273 (414)
T ss_pred             hhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHHH
Confidence            999976  22234589999999999999999999999999999999999999998888877 799999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEEEEeCCCeeEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHH
Q 017629          249 RAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLP  328 (368)
Q Consensus       249 ~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~  328 (368)
                      +|+-++|+......++|.|.+...++.+.|.|+|.|+||+.+..+++|...|+|.+.++-+.    .+..+..|.|+||+
T Consensus       274 rATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~----~~~~plaGfG~GLP  349 (414)
T KOG0787|consen  274 RATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN----NRTAPLAGFGFGLP  349 (414)
T ss_pred             HHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC----CCcCcccccccCCc
Confidence            99999888776557889999999999999999999999999999999999999987643211    12445689999999


Q ss_pred             HHHHHHHHhCCeEEEEecCCCeEEEEEEeCCCCCC-CCCC
Q 017629          329 ISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDS-QEPL  367 (368)
Q Consensus       329 i~k~iv~~~gG~i~~~s~~g~Gt~f~i~lP~~~~~-~~~~  367 (368)
                      |+|.+++++||++.+.|..|.||+++|.|...... .|.+
T Consensus       350 isrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~~e~l  389 (414)
T KOG0787|consen  350 ISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEAPESL  389 (414)
T ss_pred             HHHHHHHHhCCCeeEEeeeccccceEEEeccCCccchhhc
Confidence            99999999999999999999999999999887543 4443

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1jm6_A407 Pyruvate Dehydrogenase Kinase, Isozyme 2, Containin 3e-64
2btz_A394 Crystal Structures Of Human Pyruvate Dehydrogenase 6e-64
1y8n_A419 Crystal Structure Of The Pdk3-L2 Complex Length = 4 5e-63
2zkj_A394 Crystal Structure Of Human Pdk4-Adp Complex Length 2e-62
2e0a_A394 Crystal Structure Of Human Pyruvate Dehydrogenase K 3e-62
2q8f_A407 Structure Of Pyruvate Dehydrogenase Kinase Isoform 8e-61
1gjv_A388 Branched-chain Alpha-ketoacid Dehydrogenase Kinase 2e-57
3tz0_A418 Crystal Structure Of Branched-Chain Alpha-Ketoacid 3e-57
3vad_A418 Crystal Structure Of I170f Mutant Branched-chain Al 1e-56
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 2e-04
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp Length = 407 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/355 (42%), Positives = 208/355 (58%), Gaps = 28/355 (7%)
Query: 29  VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
           +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY
Sbjct: 31  LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89  LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
           + S  D+  F D +   D R  +Q   A   I+ RHN+VVP MA G+ + K       V 
Sbjct: 89  VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
                I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A
Sbjct: 148 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNI--YGDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY 255
            + A+ +C + Y ++PD  I      + T P    YVPSHL+ M+FEL KN++RA  E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
            +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P         
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQ------PG 317
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368
             GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct: 318 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological And Synthetic Ligands Length = 394 Back     alignment and structure
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex Length = 419 Back     alignment and structure
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex Length = 394 Back     alignment and structure
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 In Complex With Amppnp Length = 394 Back     alignment and structure
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 Length = 407 Back     alignment and structure
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck) Complxed With Atp-gamma-s Length = 388 Back     alignment and structure
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex Length = 418 Back     alignment and structure
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain Alpha-ketoacid Dehydrogenase Kinase In Complex With 3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid Length = 418 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 1e-127
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-114
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 1e-109
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-109
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 1e-107
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 2e-09
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 9e-09
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 5e-08
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 3e-07
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 3e-07
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 5e-07
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 1e-06
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 5e-06
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 2e-05
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 4e-05
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 4e-05
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 4e-04
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
 Score =  370 bits (950), Expect = e-127
 Identities = 117/376 (31%), Positives = 199/376 (52%), Gaps = 21/376 (5%)

Query: 3   AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
           +K ++  +++S I+            ++   M+  G      +LL S ++L +ELP+RIA
Sbjct: 17  SKTVTSFYNQSAID---VVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIA 73

Query: 63  RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHN 122
            R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H 
Sbjct: 74  HRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHK 133

Query: 123 NVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182
           +VV ++A GL++ +K ++ +        +  FLD+   SR+GIRML   H+ LH     P
Sbjct: 134 DVVTLLAEGLRESRKHIEDE------KLVRYFLDKTLTSRLGIRMLATHHLALH--EDKP 185

Query: 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFE 242
             +G I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ E
Sbjct: 186 DFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPE 245

Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST 302
           L+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++T
Sbjct: 246 LLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTT 305

Query: 303 ARNPLDE----------NTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTD 352
           A     +          +       G M G+G+GLP SR YA Y GG LQ+ S++G GTD
Sbjct: 306 AEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTD 365

Query: 353 AYLHLSRLGDSQEPLP 368
            YL L  +   +E   
Sbjct: 366 VYLRLRHIDGREESFR 381
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 100.0
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 100.0
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.98
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.98
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.98
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.97
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.95
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.94
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.94
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.93
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.93
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 99.93
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.92
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.91
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.91
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.86
3zxo_A129 Redox sensor histidine kinase response regulator; 99.83
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.81
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.77
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.74
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.74
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.59
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.85
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.8
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.72
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.71
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.68
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.63
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.62
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 98.43
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 98.28
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 98.24
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 98.09
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.99
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 97.94
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.91
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 97.91
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 97.81
4duh_A220 DNA gyrase subunit B; structure-based drug design, 97.73
3peh_A281 Endoplasmin homolog; structural genomics, structur 97.65
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 97.63
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 97.59
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 97.52
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 97.52
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 97.51
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 97.4
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.38
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 97.32
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 97.32
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 97.27
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 97.2
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.12
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 97.01
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 95.35
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 94.67
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 92.91
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-49  Score=375.89  Aligned_cols=344  Identities=33%  Similarity=0.649  Sum_probs=288.8

Q ss_pred             HHHHhhhcCCCCCcCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHh
Q 017629           16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL   95 (368)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l   95 (368)
                      ..|.+|+.++..++|+++|+.|+..++...++.++++++++|+.|+++|+++++.+++.+..++++..+.++|.++++++
T Consensus        27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l  106 (388)
T 1gkz_A           27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL  106 (388)
T ss_dssp             -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence            46778999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhh
Q 017629           96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL  175 (368)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l  175 (368)
                      +....++..++++++.++++.+.|++++||..|+.++.++.....      ..+...++++.+..++.+++.|+++++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l  180 (388)
T 1gkz_A          107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL  180 (388)
T ss_dssp             HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888999999999999999999999999988887765433      35678999999999999999999999999


Q ss_pred             cCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeecchhhHHHHHHHHHHHHHHHHHHhh
Q 017629          176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY  255 (368)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~  255 (368)
                      ++.  +.+.+++..+.+++.+++++++..+...+..+++..+.+.+.++.+..+.+|+.+|.+||.|||+||++|+.+++
T Consensus       181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~  258 (388)
T 1gkz_A          181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH  258 (388)
T ss_dssp             TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence            998  667788888999999999999999999999998888899998888888999999999999999999999998832


Q ss_pred             cCCCCCCCCEEEEEEeCCCeeEEEEeeeCCCCCCCCcccccccccccCCCCCCc---ccccc-------cCCCCCCcccc
Q 017629          256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE---NTDLA-------ADKGTMAGYGY  325 (368)
Q Consensus       256 ~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~---~~~~~-------~~~~~~~g~Gl  325 (368)
                      .......++|.|.+...++.+.|+|+|+|+|||++.+++||++||+++......   ...++       ...+...|+||
T Consensus       259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GL  338 (388)
T 1gkz_A          259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGF  338 (388)
T ss_dssp             TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSC
T ss_pred             cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccC
Confidence            111111248999999999999999999999999999999999999998641000   00000       01223469999


Q ss_pred             CHHHHHHHHHHhCCeEEEEecCCCeEEEEEEeCCCCCCCCCC
Q 017629          326 GLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPL  367 (368)
Q Consensus       326 GL~i~k~iv~~~gG~i~~~s~~g~Gt~f~i~lP~~~~~~~~~  367 (368)
                      ||+|||.+++.|||+|++.|.+|+||+|+|+||+.+...++.
T Consensus       339 GL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~  380 (388)
T 1gkz_A          339 GLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREESF  380 (388)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSSCCC--
T ss_pred             CHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCCCCCCC
Confidence            999999999999999999999999999999999987665544
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d1y8oa1164 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase 3e-66
d1jm6a1167 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kina 9e-66
d1gkza1148 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid 5e-64
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 3e-40
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 2e-38
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 2e-19
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 7e-11
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 4e-09
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 2e-08
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 2e-07
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 2e-04
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain
family: alpha-ketoacid dehydrogenase kinase, N-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  205 bits (522), Expect = 3e-66
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 6/166 (3%)

Query: 16  EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
           +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L
Sbjct: 2   KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 59

Query: 76  SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE--RDFTQMIKAIKVRHNNVVPMMALGLQ 133
             +P+V  V+ WY+ SF +L  + +      +   +F Q++  ++ RHN+VVP MA G+ 
Sbjct: 60  LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 119

Query: 134 QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPN 179
           + K++            I  FLDRFY +RI  RMLI QH  L   +
Sbjct: 120 EYKEKFGFDPF--ISTNIQYFLDRFYTNRISFRMLINQHTLLFGGD 163
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 167 Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 148 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 100.0
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 100.0
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 100.0
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 100.0
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 100.0
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.97
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.96
d1jm6a1167 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.89
d1gkza1148 Branched-chain alpha-ketoacid dehydrogenase kinase 99.88
d1y8oa1164 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.87
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.71
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.67
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.64
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.64
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.61
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 98.15
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 97.98
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.92
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 97.62
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.43
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.16
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 97.01
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 96.78
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 96.35
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 96.19
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 95.84
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-35  Score=252.71  Aligned_cols=182  Identities=36%  Similarity=0.703  Sum_probs=151.8

Q ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeecchhhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017629          184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP  263 (368)
Q Consensus       184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~  263 (368)
                      +++..++.+++.++++++++.++..+..+++..+++.+.++++..+.+|+.+|.|||.|||+||++|+++++.......+
T Consensus         2 ~vG~I~t~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~   81 (193)
T d1gkza2           2 FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVP   81 (193)
T ss_dssp             EETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCC
T ss_pred             ccCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCceeeecHHHHHHHHHHHHHHHHHhcccCceeeccccc
Confidence            35666788999999999999999999888888889999999888999999999999999999999999875544444457


Q ss_pred             CEEEEEEeCCCeeEEEEeeeCCCCCCCCcccccccccccCCCCCCc---cccc-------ccCCCCCCccccCHHHHHHH
Q 017629          264 PIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE---NTDL-------AADKGTMAGYGYGLPISRLY  333 (368)
Q Consensus       264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~---~~~~-------~~~~~~~~g~GlGL~i~k~i  333 (368)
                      +|.|.+...++++.|+|+|+|+|||++.+++||+|||+++......   .+.+       +.......|+||||+|||.+
T Consensus        82 ~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~i  161 (193)
T d1gkza2          82 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAY  161 (193)
T ss_dssp             CEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHH
T ss_pred             eEEEEEEccCCEEEEEEecCCCCCCHHHHHHhcCCceecccccccccccccccccccccccccccccccCCcCHHHHHHH
Confidence            8999999999999999999999999999999999999998752110   0011       02233456999999999999


Q ss_pred             HHHhCCeEEEEecCCCeEEEEEEeCCCCCCCC
Q 017629          334 ARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE  365 (368)
Q Consensus       334 v~~~gG~i~~~s~~g~Gt~f~i~lP~~~~~~~  365 (368)
                      ++.|||+|++.|.+|+||+|+|+||+.+..+|
T Consensus       162 ve~~gG~i~v~S~~g~Gt~f~l~L~~~~~~~e  193 (193)
T d1gkza2         162 AEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE  193 (193)
T ss_dssp             HHHTTCEEEEEEETTTEEEEEEEEECSSSCCC
T ss_pred             HHHCCCEEEEEecCCCceEEEEEECCCCCCCC
Confidence            99999999999999999999999999887765
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure