Citrus Sinensis ID: 017695

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
ccccccHHHcccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHccccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHcccccccccccccccccccccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHcc
cHHHHHHHccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHccccEEHcHHHHHHHccccEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccccccccEEEEcccEEEEcccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHccc
MWGIIRQKVaagggspvarirpVVSNLRNYSSAVKQMMVREALNSALdeemsadpkvfLMGEEVGEYQGAYKISKGLlekygpervldtpiteagftgIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAaksnymssgqisvpivfrgpngaaagvgaqhSHCYAAWyasvpglkvlspyssEDARGLLKaairdpdpvvflenellygesfpvsaevldssfclpigkakieregkdvTITAFSKIVGLSLKAAEILAKEGISAEVINlrsirpldrstinasvrktnrlvtveegfpqhgvgAEICASVIEEsfgyldapveriagadvpmpyaanlermAVPQVLCFLYdssidgcykflvy
MWGIIRQKvaagggspvarirpvvsNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGkakieregkdvtITAFSKIVGLSLKAAEILAKEgisaevinlrsirpldrstinasvrktnrlvtveegfpqhgvGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
***IIR**VA******VARIRPVVSNLRNY*************************KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLV*
************************************MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
*********************************VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDGCYKFLVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
Q38799363 Pyruvate dehydrogenase E1 yes no 0.983 0.994 0.820 1e-174
Q6Z1G7374 Pyruvate dehydrogenase E1 yes no 0.858 0.842 0.920 1e-171
Q0J0H4376 Pyruvate dehydrogenase E1 no no 0.950 0.928 0.833 1e-170
P52904359 Pyruvate dehydrogenase E1 N/A no 0.920 0.941 0.853 1e-167
Q86HX0356 Pyruvate dehydrogenase E1 yes no 0.912 0.941 0.636 1e-126
P32473366 Pyruvate dehydrogenase E1 yes no 0.910 0.912 0.637 1e-121
Q09171366 Pyruvate dehydrogenase E1 yes no 0.866 0.868 0.646 1e-120
P11966359 Pyruvate dehydrogenase E1 yes no 0.877 0.896 0.637 1e-118
Q9D051359 Pyruvate dehydrogenase E1 yes no 0.877 0.896 0.628 1e-118
Q9R9N4460 Pyruvate dehydrogenase E1 yes no 0.880 0.702 0.623 1e-117
>sp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2 Back     alignment and function desciption
 Score =  610 bits (1572), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 298/363 (82%), Positives = 329/363 (90%), Gaps = 2/363 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct: 1   MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct: 60  GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct: 120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct: 180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct: 240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query: 301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDG 360
           PQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+   +  +S   
Sbjct: 300 PQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIV-RASKRA 358

Query: 361 CYK 363
           CY+
Sbjct: 359 CYR 361
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1
>sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2 SV=1 Back     alignment and function description
>sp|Q0J0H4|ODPB2_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0509200 PE=2 SV=1 Back     alignment and function description
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1 Back     alignment and function description
>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDB1 PE=1 SV=2 Back     alignment and function description
>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdb1 PE=4 SV=1 Back     alignment and function description
>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2 Back     alignment and function description
>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1 Back     alignment and function description
>sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti (strain 1021) GN=pdhB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
118481185373 unknown [Populus trichocarpa] 0.950 0.935 0.903 0.0
224053535358 predicted protein [Populus trichocarpa] 0.934 0.958 0.908 0.0
296088722429 unnamed protein product [Vitis vinifera] 0.942 0.806 0.893 0.0
225425166367 PREDICTED: pyruvate dehydrogenase E1 com 0.942 0.942 0.893 1e-180
449519858372 PREDICTED: LOW QUALITY PROTEIN: pyruvate 0.950 0.938 0.883 1e-180
449445580372 PREDICTED: pyruvate dehydrogenase E1 com 0.950 0.938 0.883 1e-180
255543140368 pyruvate dehydrogenase, putative [Ricinu 0.942 0.940 0.897 1e-179
357501349361 Pyruvate dehydrogenase E1 component subu 0.926 0.941 0.888 1e-178
224075515351 predicted protein [Populus trichocarpa] 0.899 0.940 0.930 1e-178
363807782360 uncharacterized protein LOC100805001 [Gl 0.923 0.941 0.888 1e-178
>gi|118481185|gb|ABK92544.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/352 (90%), Positives = 337/352 (95%), Gaps = 3/352 (0%)

Query: 1   MWGIIRQKVAAGGGSPVA---RIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKV 57
           M+GI+RQK++AGG   +A   RIRP VS  R YSSA K++ VREALNSALDEEMSADPKV
Sbjct: 1   MFGIVRQKISAGGSPLLAFGQRIRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKV 60

Query: 58  FLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117
           FLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTF
Sbjct: 61  FLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTF 120

Query: 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK 177
           NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLK
Sbjct: 121 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLK 180

Query: 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE 237
           VL+PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIERE
Sbjct: 181 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIERE 240

Query: 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297
           GKDVTITAFSK+VG +LKAAEILAKEGI+AEVINLRSIRPLDR TINASVRKTNRLVTVE
Sbjct: 241 GKDVTITAFSKMVGYALKAAEILAKEGINAEVINLRSIRPLDRDTINASVRKTNRLVTVE 300

Query: 298 EGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349
           EGFPQHGVGAEICASV+EESFGYLDAPVERIAGADVPMPYAANLER+AVPQV
Sbjct: 301 EGFPQHGVGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERLAVPQV 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053535|ref|XP_002297861.1| predicted protein [Populus trichocarpa] gi|222845119|gb|EEE82666.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088722|emb|CBI38172.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425166|ref|XP_002264210.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 1 [Vitis vinifera] gi|359473798|ref|XP_003631360.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519858|ref|XP_004166951.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445580|ref|XP_004140550.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255543140|ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223548594|gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357501349|ref|XP_003620963.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|217073128|gb|ACJ84923.1| unknown [Medicago truncatula] gi|355495978|gb|AES77181.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|388521205|gb|AFK48664.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224075515|ref|XP_002304661.1| predicted protein [Populus trichocarpa] gi|222842093|gb|EEE79640.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807782|ref|NP_001242433.1| uncharacterized protein LOC100805001 [Glycine max] gi|255635914|gb|ACU18304.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2152745363 MAB1 "MACCI-BOU" [Arabidopsis 0.983 0.994 0.820 3.5e-155
FB|FBgn0039635365 CG11876 [Drosophila melanogast 0.863 0.868 0.704 2.1e-116
DICTYBASE|DDB_G0276417356 pdhB "pyruvate dehydrogenase E 0.910 0.938 0.637 3.2e-113
UNIPROTKB|F1N823360 PDHB "Uncharacterized protein" 0.931 0.95 0.636 2e-111
CGD|CAL0003677379 PDB1 [Candida albicans (taxid: 0.863 0.836 0.661 7.8e-110
ZFIN|ZDB-GENE-040426-2173359 pdhb "pyruvate dehydrogenase ( 0.863 0.883 0.654 7.8e-110
SGD|S000000425366 PDB1 "E1 beta subunit of the p 0.904 0.907 0.641 1e-109
POMBASE|SPBC30D10.13c366 pdb1 "pyruvate dehydrogenase e 0.863 0.866 0.648 4.3e-109
UNIPROTKB|Q2GHV6332 ECH_0149 "Putative pyruvate de 0.861 0.951 0.639 1.9e-108
TIGR_CMR|ECH_0149332 ECH_0149 "putative pyruvate de 0.861 0.951 0.639 1.9e-108
TAIR|locus:2152745 MAB1 "MACCI-BOU" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 298/363 (82%), Positives = 328/363 (90%)

Query:     1 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
             M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct:     1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query:    61 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
             GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct:    60 GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query:   121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
             MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct:   120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query:   181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
             PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct:   180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query:   241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
             VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct:   240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query:   301 PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFLYDSSIDG 360
             PQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+   +  S    
Sbjct:   300 PQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASK-RA 358

Query:   361 CYK 363
             CY+
Sbjct:   359 CYR 361
GO:0003824 "catalytic activity" evidence=IEA
GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0048046 "apoplast" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0019722 "calcium-mediated signaling" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
FB|FBgn0039635 CG11876 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276417 pdhB "pyruvate dehydrogenase E1 beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N823 PDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
CGD|CAL0003677 PDB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2173 pdhb "pyruvate dehydrogenase (lipoamide) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
SGD|S000000425 PDB1 "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC30D10.13c pdb1 "pyruvate dehydrogenase e1 component beta subunit Pdb1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GHV6 ECH_0149 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0149 ECH_0149 "putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37941ODBB_BACSU1, ., 2, ., 4, ., 40.42430.81740.9174yesno
P11966ODPB_BOVIN1, ., 2, ., 4, ., 10.63770.87730.8969yesno
Q5SLR3ODBB_THET81, ., 2, ., 4, ., 40.42450.84740.9598yesno
P26269ODPB_ASCSU1, ., 2, ., 4, ., 10.60.88280.8975N/Ano
Q72GU2ODBB_THET21, ., 2, ., 4, ., 40.42130.84740.9598yesno
P35488ODPB_ACHLA1, ., 2, ., 4, ., 10.39610.82830.9296yesno
P32473ODPB_YEAST1, ., 2, ., 4, ., 10.63790.91000.9125yesno
Q0J0H4ODPB2_ORYSJ1, ., 2, ., 4, ., 10.83380.95090.9281nono
Q6GAC0ODPB_STAAS1, ., 2, ., 4, ., 10.39270.81740.9230yesno
Q5HGZ0ODPB_STAAC1, ., 2, ., 4, ., 10.39600.81740.9230yesno
P11177ODPB_HUMAN1, ., 2, ., 4, ., 10.61300.87730.8969yesno
P27746ACOB_CUPNH1, ., 1, ., 1, ., -0.39000.83920.9112yesno
Q9R9N4ODPB_RHIME1, ., 2, ., 4, ., 10.62380.88010.7021yesno
P52904ODPB_PEA1, ., 2, ., 4, ., 10.85380.92090.9415N/Ano
O44451ODPB_CAEEL1, ., 2, ., 4, ., 10.64460.86370.9005yesno
O66113ODPB_ZYMMO1, ., 2, ., 4, ., 10.63960.83100.6601yesno
Q86HX0ODPB_DICDI1, ., 2, ., 4, ., 10.63600.91280.9410yesno
Q6GHZ1ODPB_STAAR1, ., 2, ., 4, ., 10.39270.81740.9230yesno
Q09171ODPB_SCHPO1, ., 2, ., 4, ., 10.64680.86640.8688yesno
Q38799ODPB1_ARATH1, ., 2, ., 4, ., 10.82090.98360.9944yesno
Q5RE79ODPB_PONAB1, ., 2, ., 4, ., 10.61300.87730.8969yesno
Q9D051ODPB_MOUSE1, ., 2, ., 4, ., 10.62840.87730.8969yesno
Q1RJX3ODPB_RICBR1, ., 2, ., 4, ., 10.61530.83920.9476yesno
Q68XA8ODPB_RICTY1, ., 2, ., 4, ., 10.59610.83920.9447yesno
P99063ODPB_STAAN1, ., 2, ., 4, ., 10.39270.81740.9230yesno
Q4UKQ7ODPB_RICFE1, ., 2, ., 4, ., 10.61530.83920.9447yesno
P49432ODPB_RAT1, ., 2, ., 4, ., 10.62220.87730.8969yesno
Q92IS2ODPB_RICCN1, ., 2, ., 4, ., 10.60570.83920.9447yesno
P0A0A2ODPB_STAAW1, ., 2, ., 4, ., 10.39270.81740.9230yesno
Q9ZDR3ODPB_RICPR1, ., 2, ., 4, ., 10.59610.83920.9447yesno
P0A0A3ODPB_STAAU1, ., 2, ., 4, ., 10.39270.81740.9230yesno
Q6Z1G7ODPB1_ORYSJ1, ., 2, ., 4, ., 10.92060.85830.8422yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.998
4th Layer1.2.4.10.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I0194
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_II001653
SubName- Full=Putative uncharacterized protein; (355 aa)
••• ••• 0.992
gw1.X.5451.1
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)
••••••• 0.988
grail3.0009040502
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)
••••••• 0.988
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
• • ••• 0.975
estExt_Genewise1_v1.C_410201
hypothetical protein (414 aa)
• •  •• 0.971
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
• • ••• 0.970
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•  •••• 0.969
gw1.XIX.2128.1
hypothetical protein (435 aa)
• •  •• 0.969
estExt_fgenesh4_pg.C_LG_VIII0227
hypothetical protein (588 aa)
• • ••• 0.962
LPD3
precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)
•    •• 0.936

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 0.0
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 0.0
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 0.0
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 0.0
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-178
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 1e-106
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 1e-102
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 2e-50
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 3e-47
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 8e-30
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 4e-28
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 4e-22
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 4e-21
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 2e-19
cd06586154 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding 1e-18
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 9e-18
PRK12571641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 7e-15
PLN02234641 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate 3e-12
PRK12315581 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate 2e-10
PLN02582677 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate 9e-10
PLN02225701 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate 4e-07
PRK05899586 PRK05899, PRK05899, transketolase; Reviewed 1e-04
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information 
 Score =  666 bits (1719), Expect = 0.0
 Identities = 298/338 (88%), Positives = 318/338 (94%), Gaps = 1/338 (0%)

Query: 13  GGSPVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
            G  + R RP  +   R Y+SA K+M VR+ALNSALDEEMSADPKVF+MGEEVGEYQGAY
Sbjct: 2   LGQLLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAY 61

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGLL+KYGP+RVLDTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSA
Sbjct: 62  KITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSA 121

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS C+AAWY+SVPGLKVL+PYSSEDARGLL
Sbjct: 122 AKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLL 181

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTI AFSK+VG
Sbjct: 182 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVG 241

Query: 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICA 311
            +LKAAEILAKEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEG+PQHGVGAEICA
Sbjct: 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICA 301

Query: 312 SVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349
           SV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQV
Sbjct: 302 SVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQV 339

Length = 356
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 100.0
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PRK12753663 transketolase; Reviewed 100.0
PTZ00089661 transketolase; Provisional 100.0
PRK05899624 transketolase; Reviewed 100.0
PLN02790654 transketolase 100.0
KOG0523632 consensus Transketolase [Carbohydrate transport an 100.0
TIGR03186889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK09405891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
PRK12754663 transketolase; Reviewed 100.0
PRK13012896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.97
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 99.92
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.92
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 99.91
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 99.9
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 99.9
PRK09622407 porA pyruvate flavodoxin oxidoreductase subunit al 99.88
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 99.86
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 99.84
PRK05261785 putative phosphoketolase; Provisional 99.83
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 99.83
TIGR00759885 aceE pyruvate dehydrogenase E1 component, homodime 99.77
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 99.63
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 99.6
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 99.59
COG2609887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.58
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 99.34
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 99.32
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 99.27
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.25
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.17
COG3957793 Phosphoketolase [Carbohydrate transport and metabo 99.14
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 98.91
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 98.77
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 98.69
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 98.47
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.62
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.49
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 97.42
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.82
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 96.48
PRK07092 530 benzoylformate decarboxylase; Reviewed 96.29
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 96.16
PRK07586 514 hypothetical protein; Validated 96.09
PRK08199 557 thiamine pyrophosphate protein; Validated 96.02
PRK12474 518 hypothetical protein; Provisional 95.93
PRK08611 576 pyruvate oxidase; Provisional 95.88
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 95.8
PRK08322 547 acetolactate synthase; Reviewed 95.73
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 95.69
PRK07524 535 hypothetical protein; Provisional 95.32
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 95.22
PRK07064 544 hypothetical protein; Provisional 95.15
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 95.11
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 95.05
PRK09124 574 pyruvate dehydrogenase; Provisional 94.98
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 94.97
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 94.93
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 94.86
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 94.84
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 94.66
PRK08617 552 acetolactate synthase; Reviewed 94.59
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 94.58
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 94.58
PRK06457 549 pyruvate dehydrogenase; Provisional 94.38
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 94.16
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 94.13
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 94.12
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 94.12
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 94.04
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 94.02
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 93.92
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 93.88
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 93.72
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 93.59
PRK08155 564 acetolactate synthase catalytic subunit; Validated 93.59
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 93.43
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 93.35
PLN02470 585 acetolactate synthase 93.28
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 93.26
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 93.15
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 93.01
PRK08266 542 hypothetical protein; Provisional 92.91
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 92.91
PRK05858 542 hypothetical protein; Provisional 92.85
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 92.84
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 92.42
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 92.15
PRK08327 569 acetolactate synthase catalytic subunit; Validated 91.86
PRK11269 591 glyoxylate carboligase; Provisional 91.85
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 91.82
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 91.78
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 91.6
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 91.57
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 91.3
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 91.29
PRK06112 578 acetolactate synthase catalytic subunit; Validated 91.26
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 91.02
PRK06546 578 pyruvate dehydrogenase; Provisional 90.84
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 90.75
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 90.71
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 90.38
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 90.22
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 90.18
PRK08273 597 thiamine pyrophosphate protein; Provisional 90.12
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 90.05
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 89.86
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 89.56
PLN02573 578 pyruvate decarboxylase 89.32
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 88.83
PF09363203 XFP_C: XFP C-terminal domain; InterPro: IPR018969 88.34
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 88.16
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 87.94
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 87.85
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 87.37
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 87.06
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 86.72
PRK08155564 acetolactate synthase catalytic subunit; Validated 86.61
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 86.13
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 85.92
PRK06163202 hypothetical protein; Provisional 85.91
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 85.69
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 85.35
PRK06154 565 hypothetical protein; Provisional 84.38
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 84.23
PRK08617552 acetolactate synthase; Reviewed 83.71
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 83.07
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 81.8
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 81.77
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 81.51
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 81.27
cd0302890 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte 80.21
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 80.19
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information 
Probab=100.00  E-value=8e-76  Score=572.95  Aligned_cols=346  Identities=86%  Similarity=1.297  Sum_probs=316.6

Q ss_pred             cccccc-ccccccccccccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHH
Q 017695           19 RIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT   97 (367)
Q Consensus        19 ~~~~~~-~~~~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~v   97 (367)
                      |.||.. +--+.|.+...++++|++|+++|.+++++||+++++++|++.++|+++.+++|.++|+|+||||+||+||||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~v   87 (356)
T PLN02683          8 RTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFT   87 (356)
T ss_pred             CccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHH
Confidence            445544 4478888888889999999999999999999999999999988888887889999998999999999999999


Q ss_pred             HHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcE
Q 017695           98 GIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK  177 (367)
Q Consensus        98 g~AaGlA~~G~~p~~~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~  177 (367)
                      |+|+|||++|+|||+++++++|++||||||+|++|+++||+||+.++||++++++|...|.|+||++.++++||++|||+
T Consensus        88 g~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~  167 (356)
T PLN02683         88 GIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLK  167 (356)
T ss_pred             HHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCCE
Confidence            99999999999999999889999999999999999999999999999999999888777889999888889999999999


Q ss_pred             EEeeCCHHHHHHHHHHhHcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHH
Q 017695          178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA  257 (367)
Q Consensus       178 V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa  257 (367)
                      |++|+|+.|++.+++++++.++|+|||+++.+++...|......++++.+++|+++++++|+|++||++|+|++.|++|+
T Consensus       168 V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa  247 (356)
T PLN02683        168 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAA  247 (356)
T ss_pred             EEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHH
Confidence            99999999999999999999999999988776665444322222335677899999999999999999999999999999


Q ss_pred             HHHHhcCCceEEEEeeecCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHHhccCCCCCCeEEEecCCCCCCC
Q 017695          258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY  337 (367)
Q Consensus       258 ~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~~~~~~~~~~v~~ig~~d~~~~~  337 (367)
                      ++|+++||+++|||++||||||++.|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.|+|++|.++|+
T Consensus       248 ~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~  327 (356)
T PLN02683        248 EILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPY  327 (356)
T ss_pred             HHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999998765457799999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhcc
Q 017695          338 AANLERMAVPQVLCFLYDSSIDGCYKFL  365 (367)
Q Consensus       338 ~~~l~~~~~l~~~~I~~~~i~~~l~~~~  365 (367)
                      +..|++++.+++++|+++ +++++.++.
T Consensus       328 ~~~le~~~~p~~~~i~~a-~~~~~~~~~  354 (356)
T PLN02683        328 AANLERLALPQVEDIVRA-AKRACYRSV  354 (356)
T ss_pred             cHHHHHhhCCCHHHHHHH-HHHHHHhhc
Confidence            999999998999999999 999998763

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 1e-116
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-116
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 1e-105
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 9e-65
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-63
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 1e-63
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 9e-60
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 2e-56
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 1e-55
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 2e-48
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 2e-48
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 3e-47
2o1x_A629 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From 2e-11
3ooy_A616 Crystal Structure Of Human Transketolase (Tkt) Leng 6e-10
3mos_A616 The Structure Of Human Transketolase Length = 616 7e-10
2o1s_A621 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From 6e-07
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure 
Iteration: 1

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/320 (61%), Positives = 248/320 (77%), Gaps = 1/320 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
           RP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVP
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 313
Query: 335 MPYAANLERMAVPQVLCFLY 354
           MPYA  LE  ++PQV   ++
Sbjct: 314 MPYAKILEDNSIPQVKDIIF 333
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 Back     alignment and structure
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 Back     alignment and structure
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 Back     alignment and structure
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 0.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 1e-161
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 1e-158
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 1e-149
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 1e-142
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 1e-138
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 3e-20
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 2e-18
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
 Score =  583 bits (1506), Expect = 0.0
 Identities = 197/326 (60%), Positives = 249/326 (76%), Gaps = 1/326 (0%)

Query: 25  SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
            +  ++     Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3   GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62

Query: 85  RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
           R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   V
Sbjct: 63  RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122

Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
           PIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182

Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
           ENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242

Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDA 323
           +  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDA
Sbjct: 243 VECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDA 302

Query: 324 PVERIAGADVPMPYAANLERMAVPQV 349
           P  R+ GADVPMPYA  LE  ++PQV
Sbjct: 303 PAVRVTGADVPMPYAKILEDNSIPQV 328
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2qtc_A886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
3ahc_A845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.96
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.86
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 99.72
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 94.15
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.26
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 93.19
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.12
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 92.94
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 92.47
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 92.37
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 92.22
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 92.14
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 91.75
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 91.6
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 91.57
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 91.08
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 90.75
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 90.58
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 89.96
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 89.9
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 89.32
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 87.41
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 87.11
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 86.51
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 85.48
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 85.05
2lqo_A92 Putative glutaredoxin RV3198.1/MT3292; TRX fold, o 84.99
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
Probab=100.00  E-value=3.2e-69  Score=524.77  Aligned_cols=327  Identities=60%  Similarity=1.009  Sum_probs=297.5

Q ss_pred             ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017695           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (367)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~  114 (367)
                      .+++++++++++|.+++++||+|+++++|++.++|+++.+++|.++|+|+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus        13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~   92 (341)
T 2ozl_B           13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF   92 (341)
T ss_dssp             CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence            46899999999999999999999999999987777777678899999999999999999999999999999999999996


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017695          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (367)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a  194 (367)
                      ++++|++|++|||++++|+++||+||++++||+++.++|...++|+||||.+|++++++|||+|++|+|++|+++++++|
T Consensus        93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~a  172 (341)
T 2ozl_B           93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA  172 (341)
T ss_dssp             SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHHH
Confidence            56899999999999999999999999999999999887754459999988878999999999999999999999999999


Q ss_pred             HcCCCcEEEeccccccCCCCCccccccCCCccccCCcEEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceEEEEeee
Q 017695          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (367)
Q Consensus       195 ~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~~~g~di~Iia~G~~v~~al~Aa~~L~~~Gi~v~vi~~~~  274 (367)
                      ++.++|++||++|.+|+.+.++.+.++++++.+++||++++++|.|++||++|+++..|++|+++|+++|++++|||+++
T Consensus       173 ~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~~  252 (341)
T 2ozl_B          173 IRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRT  252 (341)
T ss_dssp             HHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCE
T ss_pred             HhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeeee
Confidence            99999999999987765322221222445677889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHhcCCeEEEEeCCCCCCchHHHHHHHHHH-hccCCCCCCeEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017695          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVLCFL  353 (367)
Q Consensus       275 i~P~d~~~l~~~~~~~~~ivvvEe~~~~GGlg~~v~~~l~~-~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~~l~~~~I~  353 (367)
                      ++|||++.|.+++++++++|++||+...||||++|++.+.+ +++..++.|+.++|++|.|++++..+++++++|+++|+
T Consensus       253 l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~I~  332 (341)
T 2ozl_B          253 IRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDII  332 (341)
T ss_dssp             EETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHHHH
T ss_pred             ecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHHHH
Confidence            99999999999999999999999999899999999999988 76544578999999999999998888899999999999


Q ss_pred             HHHHHHHhh
Q 017695          354 YDSSIDGCY  362 (367)
Q Consensus       354 ~~~i~~~l~  362 (367)
                      ++ |+++++
T Consensus       333 ~~-i~~~l~  340 (341)
T 2ozl_B          333 FA-IKKTLN  340 (341)
T ss_dssp             HH-HHHHHT
T ss_pred             HH-HHHHhc
Confidence            99 999875
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 367
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 3e-61
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 3e-59
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 4e-57
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 1e-50
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 1e-49
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 2e-44
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 8e-28
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 2e-27
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 7e-27
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 3e-26
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 4e-26
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 2e-22
d2c42a3157 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu 2e-08
d2r8oa1195 c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul 0.002
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (490), Expect = 3e-61
 Identities = 122/191 (63%), Positives = 150/191 (78%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E 
Sbjct: 2   LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA
Sbjct: 62  GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           +AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181

Query: 215 PVSAEVLDSSF 225
               E     F
Sbjct: 182 EFPPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157 Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.97
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.97
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.97
d1w85b2132 Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d 99.96
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.96
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 99.96
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 99.71
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 99.66
d2c42a3157 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 99.48
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 99.44
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 99.34
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 99.12
d2ieaa3186 Pyruvate dehydrogenase E1 component, C-domain {Esc 98.58
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 98.43
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.59
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.34
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 96.29
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 95.85
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 95.63
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 95.61
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 95.59
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 95.57
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.55
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 94.84
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 94.59
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 93.55
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 93.13
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 92.45
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 91.94
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 88.71
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 83.23
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.1e-46  Score=336.80  Aligned_cols=200  Identities=36%  Similarity=0.610  Sum_probs=184.7

Q ss_pred             ccccHHHHHHHHHHHHHhhCCcEEEEecCCCCcccccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 017695           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (367)
Q Consensus        35 ~~~~~r~a~~~~L~~l~~~d~~vv~l~aDl~~~~g~~~~~~~~~~~~~p~R~i~~GIaE~~~vg~AaGlA~~G~~p~~~~  114 (367)
                      +.+++++|++++|.+++++|++++++++|++..+|+|+.+++|.++|+|+|++|+||+|++++|+|+|+|++|+|||+++
T Consensus         3 ~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~   82 (204)
T d1qs0b1           3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI   82 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             ceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEE
Confidence            56899999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccccEEEEeCCCCCCCCCCCchhHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 017695          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (367)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH~~~~~a~~~~iP~~~V~~P~d~~e~~~~~~~a  194 (367)
                      ++++|+.+|+|||+|++|+++||++++.++|++++.+.|...+.|++|||+++++|+++||++|++|+|+.|++.++++|
T Consensus        83 ~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a  162 (204)
T d1qs0b1          83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS  162 (204)
T ss_dssp             SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887766677999999999999999999999999999999999999


Q ss_pred             HcCCCcEEEeccccccCCCCCccccccCCCccccCCc--EEEeeeC
Q 017695          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK--AKIEREG  238 (367)
Q Consensus       195 ~~~~~Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk--~~v~~~g  238 (367)
                      ++.++|++++++|.+|+.+.    +++++.+..++|+  +.++++|
T Consensus       163 ~~~~~Pvi~~e~k~ly~~~~----~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         163 IECDDPVIFLEPKRLYNGPF----DGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHSSSCEEEEEEGGGSSSCC----CSCSSSCCCCSTTSTTCEEESS
T ss_pred             HhCCCcEEEEeeHHHhCCCc----cCCCccCCCCcccCccccCCCC
Confidence            99999999999999997642    3344556667776  6677765
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure