Citrus Sinensis ID: 017710

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
cccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEEEcccccccccccCCccEEEcccccccEEEEEEEEccccHHHHHHccccccccHHHHHHHHcccccCEEEEEccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEECccccccccccccccccHHHHHHHHHHHHHHHHcccccccccCEEEEEEEEccccccEEEcHHHHHcccccccc
***********MLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQN************************************************************************NLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK*****
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MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
50S ribosomal protein L1, chloroplastic This protein binds directly to 23S ribosomal RNA.probableQ9LY66
50S ribosomal protein L1 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.probableB7KIR7
50S ribosomal protein L1 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.probableQ8YLJ7

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3BBO, chain D
Confidence level:very confident
Coverage over the Query: 131-357
View the alignment between query and template
View the model in PyMOL