Citrus Sinensis ID: 017710

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
cccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEEEcccccccccccEEccEEEcccccccEEEEEEEEccccHHHHHHcccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccEEEcHHHHHcccccccc
ccccccccccHHHHHcccccccccccccccHcccccccccccccccHHHHcccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccccccHHHHHHHcccccccccccccccEcHHHHHHHHHcccccccccEEEEEEEEccccccHHHccEEEEEccccccccccEEEEcccHHHHHHHHccccEEEcHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHccccccccccEcccHHHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccEEEcHHHHHHccccccc
matcgttpsslmltyaatpvhpqdltpslsllsfkpsktaaFSLCTNlsvrggerraskwldlyplrqnknglpgHMLAAASAVeadtdlatddveddtqggtegatatatatistkpkkgkaalplkrdrtrSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHfrlnidpkyndqqlratvslpkgtgkSVKVAVLAQGEKfneaknagadlvggdDLIEQIKGGFMefdkliaspDMMVKVASLgkilgprglmpnpkagtvttnIPQAIEEFKKGkveyradktgivhipfgkadfsedDLLINFLAAVKSIeankpkgakgvyWKSAYICSSMGPSIRLNIKEMLdyklpsnf
matcgttpssLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLctnlsvrggerraskwlDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVeddtqggtegatatatatistkpkkgkaalplkrdrtrskrfleiqnlregkkeydLKTAISLLKQMSSTKFTETAEAHFrlnidpkyndQQLRATvslpkgtgkSVKVAVLAQGEKfneaknagadlvgGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSieankpkgakgvyWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
MATCGTTPSSLMLTYAATPVHPQDltpslsllsfkpsktAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASaveadtdlatddveddtqggtegatatatatISTkpkkgkaalplkRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
************LTYAA***********LSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQN********************************************************************************YDLKTAISLL**********TAEAHFRLNIDPKYN****************SVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPN*KAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD*******
***********MLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLS********************************************************************************************NLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK*****
********SSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATAT**************KRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
*********************PQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLA*************GATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
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MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
Q9LY66346 50S ribosomal protein L1, yes no 0.931 0.988 0.697 1e-136
Q9LE95352 50S ribosomal protein L1, N/A no 0.956 0.997 0.655 1e-127
B0JNQ5237 50S ribosomal protein L1 yes no 0.623 0.966 0.591 2e-77
Q3MA18238 50S ribosomal protein L1 yes no 0.623 0.962 0.595 3e-77
P49208208 50S ribosomal protein L1, N/A no 0.455 0.802 0.844 3e-77
Q8YLJ7238 50S ribosomal protein L1 yes no 0.623 0.962 0.591 6e-77
Q8DM27237 50S ribosomal protein L1 yes no 0.632 0.978 0.575 3e-76
O78413234 50S ribosomal protein L1, yes no 0.615 0.965 0.599 7e-76
Q31QK4237 50S ribosomal protein L1 yes no 0.632 0.978 0.575 2e-75
B7KIR7238 50S ribosomal protein L1 yes no 0.626 0.966 0.556 4e-75
>sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/367 (69%), Positives = 287/367 (78%), Gaps = 25/367 (6%)

Query: 1   MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGER-RASK 59
           MA C T  SSLML YAA     QDLTP+ SL SF  S+    S    L + GG R R   
Sbjct: 1   MAACATH-SSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSF--PLLLLGGSRDRRCA 57

Query: 60  WLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATIST-KP 118
            +D    R + +          SAV A+ DL   D E+D +        TATA +   KP
Sbjct: 58  AID----RASNHKF------IVSAVAAEADL---DTEEDLE-------QTATAVLDPPKP 97

Query: 119 KKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLN 178
           KKGKAAL LKRDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLN
Sbjct: 98  KKGKAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLN 157

Query: 179 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFM 238
           IDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK +EAK+AGAD+VG DDLIEQIKGGFM
Sbjct: 158 IDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFM 217

Query: 239 EFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG 298
           EFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTG
Sbjct: 218 EFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTG 277

Query: 299 IVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 358
           IVHIPFGK +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM
Sbjct: 278 IVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREM 337

Query: 359 LDYKLPS 365
           +D+K P+
Sbjct: 338 IDFKPPT 344
This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LE95|RK1_SPIOL 50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1 Back     alignment and function description
>sp|B0JNQ5|RL1_MICAN 50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q3MA18|RL1_ANAVT 50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|P49208|RK1_PEA 50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8YLJ7|RL1_NOSS1 50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q8DM27|RL1_THEEB 50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|O78413|RK1_GUITH 50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1 Back     alignment and function description
>sp|Q31QK4|RL1_SYNE7 50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|B7KIR7|RL1_CYAP7 50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
255553460360 50S ribosomal protein L1p, putative [Ric 0.975 0.994 0.738 1e-147
224055100355 predicted protein [Populus trichocarpa] 0.956 0.988 0.726 1e-141
118489924355 unknown [Populus trichocarpa x Populus d 0.956 0.988 0.723 1e-141
356531651345 PREDICTED: 50S ribosomal protein L1, chl 0.937 0.997 0.717 1e-140
449488819360 PREDICTED: 50S ribosomal protein L1, chl 0.950 0.969 0.710 1e-137
449436333360 PREDICTED: 50S ribosomal protein L1, chl 0.950 0.969 0.707 1e-136
118486868355 unknown [Populus trichocarpa] 0.929 0.960 0.716 1e-136
224106139329 predicted protein [Populus trichocarpa] 0.858 0.957 0.696 1e-134
7572940346 L1 protein [Arabidopsis thaliana] 0.931 0.988 0.697 1e-134
15229443346 50S ribosomal protein L1 [Arabidopsis th 0.931 0.988 0.697 1e-134
>gi|255553460|ref|XP_002517771.1| 50S ribosomal protein L1p, putative [Ricinus communis] gi|223543043|gb|EEF44578.1| 50S ribosomal protein L1p, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/367 (73%), Positives = 300/367 (81%), Gaps = 9/367 (2%)

Query: 1   MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKW 60
           MATC ++PSSLMLTY A+ VHPQDLTPSL  LSFKP     F L        G+R++SK 
Sbjct: 1   MATCTSSPSSLMLTYGASTVHPQDLTPSL--LSFKPK---TFFLNPLALGSNGDRKSSKS 55

Query: 61  LDLYPLRQNKNG-LPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPK 119
            + Y  +  K G   G      +A  A      DDVE+  +GG     ATAT    +KPK
Sbjct: 56  FNFYTQKDAKIGTCGGGGGVVVAAALAAEAEVADDVEEREEGGD---VATATVAAPSKPK 112

Query: 120 KGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNI 179
           KGKAALPLKRDR RSKRFLEIQ LRE K+EYDL+TAISLLKQM+++KF ETAEAHFRLNI
Sbjct: 113 KGKAALPLKRDRARSKRFLEIQKLRENKQEYDLQTAISLLKQMATSKFVETAEAHFRLNI 172

Query: 180 DPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFME 239
           DPKYNDQQLRATV+LPKGTG++VKVAVL QGEKF+EAKNAGAD+VGG+DLIEQIKGGFM+
Sbjct: 173 DPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADMVGGEDLIEQIKGGFMD 232

Query: 240 FDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGI 299
           FDKLIASPDMM KVASLGKILGPRGLMPNPKAGTV TNIPQAI EFKKGKVEYRADKTGI
Sbjct: 233 FDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVATNIPQAIAEFKKGKVEYRADKTGI 292

Query: 300 VHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 359
           VHIPFGKADFSEDDLL+N  AA+KSIE NKP GAKGVYWKSA+ICSSMGPSIRLNI+EML
Sbjct: 293 VHIPFGKADFSEDDLLVNLHAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREML 352

Query: 360 DYKLPSN 366
           +YKLPSN
Sbjct: 353 EYKLPSN 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224055100|ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|222845674|gb|EEE83221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489924|gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|356531651|ref|XP_003534390.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449488819|ref|XP_004158181.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436333|ref|XP_004135947.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486868|gb|ABK95268.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106139|ref|XP_002314057.1| predicted protein [Populus trichocarpa] gi|222850465|gb|EEE88012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7572940|emb|CAA62364.1| L1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15229443|ref|NP_191908.1| 50S ribosomal protein L1 [Arabidopsis thaliana] gi|75311693|sp|Q9LY66.1|RK1_ARATH RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor gi|7573332|emb|CAB87802.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|15450737|gb|AAK96640.1| AT3g63490/MAA21_120 [Arabidopsis thaliana] gi|16649119|gb|AAL24411.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|22137008|gb|AAM91349.1| At3g63490/MAA21_120 [Arabidopsis thaliana] gi|24899727|gb|AAN65078.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|332646971|gb|AEE80492.1| 50S ribosomal protein L1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2087388346 EMB3126 "EMBRYO DEFECTIVE 3126 0.645 0.684 0.852 2.4e-110
TIGR_CMR|CJE_0525233 CJE_0525 "ribosomal protein L1 0.623 0.982 0.489 8.6e-56
UNIPROTKB|Q06797232 rplA "50S ribosomal protein L1 0.604 0.956 0.472 2.9e-55
TIGR_CMR|CHY_2322231 CHY_2322 "ribosomal protein L1 0.599 0.952 0.495 7e-54
TIGR_CMR|BA_0098230 BA_0098 "ribosomal protein L1" 0.615 0.982 0.460 1.1e-53
TIGR_CMR|DET_0992237 DET_0992 "ribosomal protein L1 0.613 0.949 0.475 3.8e-53
TIGR_CMR|SPO_3513232 SPO_3513 "ribosomal protein L1 0.572 0.905 0.480 9.2e-52
TIGR_CMR|GSU_2866234 GSU_2866 "ribosomal protein L1 0.574 0.901 0.497 1.9e-51
TIGR_CMR|CBU_0227232 CBU_0227 "ribosomal protein L1 0.602 0.952 0.466 3.6e-50
TIGR_CMR|SO_0221233 SO_0221 "ribosomal protein L1" 0.602 0.948 0.470 7.4e-50
TAIR|locus:2087388 EMB3126 "EMBRYO DEFECTIVE 3126" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1053 (375.7 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
 Identities = 202/237 (85%), Positives = 223/237 (94%)

Query:   129 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQL 188
             RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQL
Sbjct:   108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQL 167

Query:   189 RATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPD 248
             RATVSLPKGTG++V VAVLAQGEK +EAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPD
Sbjct:   168 RATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPD 227

Query:   249 MMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKAD 308
             MMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +
Sbjct:   228 MMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVN 287

Query:   309 FSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 365
             F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+
Sbjct:   288 FTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
TIGR_CMR|CJE_0525 CJE_0525 "ribosomal protein L1" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q06797 rplA "50S ribosomal protein L1" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2322 CHY_2322 "ribosomal protein L1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0098 BA_0098 "ribosomal protein L1" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0992 DET_0992 "ribosomal protein L1" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3513 SPO_3513 "ribosomal protein L1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2866 GSU_2866 "ribosomal protein L1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0227 CBU_0227 "ribosomal protein L1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0221 SO_0221 "ribosomal protein L1" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LY66RK1_ARATHNo assigned EC number0.69750.93180.9884yesno
B7KIR7RL1_CYAP7No assigned EC number0.55650.62670.9663yesno
Q8YLJ7RL1_NOSS1No assigned EC number0.59130.62390.9621yesno
Q2JTQ5RL1_SYNJANo assigned EC number0.56170.62670.9745yesno
O78413RK1_GUITHNo assigned EC number0.59910.61580.9658yesno
Q8DM27RL1_THEEBNo assigned EC number0.57510.63210.9789yesno
Q5N3N8RL1_SYNP6No assigned EC number0.57080.63210.9789yesno
B0CAD0RL1_ACAM1No assigned EC number0.57390.62390.9703yesno
Q9LE95RK1_SPIOLNo assigned EC number0.65570.95640.9971N/Ano
Q31QK4RL1_SYNE7No assigned EC number0.57510.63210.9789yesno
Q119S7RL1_TRIEINo assigned EC number0.57070.61030.9411yesno
B0JNQ5RL1_MICANNo assigned EC number0.59130.62390.9662yesno
B7JWT7RL1_CYAP8No assigned EC number0.57820.62670.9663yesno
B5YEX9RL1_DICT6No assigned EC number0.51940.62120.9421yesno
Q7NK78RL1_GLOVINo assigned EC number0.55210.62670.9663yesno
A5GPD4RL1_SYNPWNo assigned EC number0.58590.61580.9617yesno
A5GWK1RL1_SYNR3No assigned EC number0.58590.61580.9617yesno
Q2JM50RL1_SYNJBNo assigned EC number0.55270.63210.9830yesno
Q3MA18RL1_ANAVTNo assigned EC number0.59560.62390.9621yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.1649.1
RecName- Full=Ribosomal protein L1; (349 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.3183000301
Predicted protein (109 aa)
•  •  • 0.928
grail3.3183000201
Predicted protein (143 aa)
•  •• • 0.913
gw1.I.5571.1
hypothetical protein (174 aa)
• ••• • 0.896
gw1.IV.3048.1
SubName- Full=Putative uncharacterized protein; (227 aa)
• ••• • 0.894
gw1.XI.877.1
hypothetical protein (174 aa)
• ••• • 0.891
eugene3.00141000
hypothetical protein (227 aa)
•  •• • 0.885
gw1.16155.2.1
Predicted protein (206 aa)
•  •  • 0.866
eugene3.160500001
Predicted protein (113 aa)
• ••• • 0.864
gw1.II.2942.1
SubName- Full=Putative uncharacterized protein; (218 aa)
• ••• • 0.861
estExt_Genewise1_v1.C_LG_I2532
SubName- Full=Putative uncharacterized protein; (187 aa)
•  •• • 0.857

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
CHL00129229 CHL00129, rpl1, ribosomal protein L1; Reviewed 1e-131
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 1e-126
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 1e-113
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 1e-100
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 5e-75
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 1e-67
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 6e-32
TIGR01170141 TIGR01170, rplA_mito, ribosomal protein L1, mitoch 5e-24
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 6e-11
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed Back     alignment and domain information 
 Score =  373 bits (960), Expect = e-131
 Identities = 142/229 (62%), Positives = 182/229 (79%), Gaps = 1/229 (0%)

Query: 131 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRA 190
           +  S+R  E+++  E KK Y  + AI+LLK+ ++ KF ETAEAH  LNIDPKY DQQLR 
Sbjct: 2   KKLSRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRT 60

Query: 191 TVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMM 250
           TV+LPKGTGK++++AVL   EK  EAKNAGAD+VG DDLIE+I  G ++FD LIA+PDMM
Sbjct: 61  TVTLPKGTGKTIRIAVLTNEEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMM 120

Query: 251 VKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFS 310
            K+A LG++LGPRGLMP+PK+GTVTT++  AI EFKKGK+EYRADKTGIVH+ FGK++F+
Sbjct: 121 PKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFGKSNFT 180

Query: 311 EDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 359
           E+DLL N  A  +SIE N+P G KG YWKS YICS+MGPSI+++I  + 
Sbjct: 181 EEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229

Length = 229
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial Back     alignment and domain information
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 99.91
KOG1685343 consensus Uncharacterized conserved protein [Funct 99.56
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 96.4
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-70  Score=507.94  Aligned_cols=224  Identities=52%  Similarity=0.876  Sum_probs=220.8

Q ss_pred             ccchHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcc
Q 017710          132 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE  211 (367)
Q Consensus       132 ~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e  211 (367)
                      |++|||+++.+.++..+.|++.|||+++++.+.++|+||||++++|++|+++++|++||+|.|||++|+..||||||+++
T Consensus         3 k~~k~~~~~~~~~d~~~~~~i~eai~~~ke~~~~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g~   82 (228)
T COG0081           3 KKSKRYRAASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADGE   82 (228)
T ss_pred             hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhccccCcceEEEEEEEcccCCCCcccccceeEECCCCCCCccEEEEEcChH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHcCCCeeccHHHHHHHHcC-CCcccEEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCce
Q 017710          212 KFNEAKNAGADLVGGDDLIEQIKGG-FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKV  290 (367)
Q Consensus       212 ~aeeAkeaGAd~VGgeeLIekIk~g-~~~FD~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v  290 (367)
                      .+++|++||||+||++||+++|++| |.+||+|||+|||||.+++||++||||||||||++||++.|+..+|+++|+|++
T Consensus        83 ~~~~A~~AGad~Vg~edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~v  162 (228)
T COG0081          83 KAEEAKAAGADYVGGEDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTV  162 (228)
T ss_pred             hHHHHHHcCCCEecHHHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhcCcE
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEec
Q 017710          291 EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI  355 (367)
Q Consensus       291 ~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~  355 (367)
                      +||+|+.|+||++||+++|++|+|.||+.++++.|.+.+|.+.|+.||+++||||||||+++|+.
T Consensus       163 ~~R~dk~g~ih~~iGk~sf~~e~L~eNi~a~l~~i~~~~p~~~kg~~ik~v~vstTMGP~v~v~~  227 (228)
T COG0081         163 EFRADKAGVIHVPIGKVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVDL  227 (228)
T ss_pred             EEEECCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHhCcCCcccceEeEEEEecCCCCCEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
3bbo_D352 Homology Model For The Spinach Chloroplast 50s Subu 1e-116
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 2e-61
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-61
2hgj_C229 Fitting Of Components With Known Structure Into An 2e-61
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 2e-61
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 2e-61
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 4e-61
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 4e-61
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 5e-61
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 5e-61
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 1e-60
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 3e-60
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 4e-60
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 3e-59
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 4e-59
3fik_5234 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 1e-50
2rdo_9233 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 1e-50
2gya_2222 Structure Of The 50s Subunit Of A Pre-Translocation 2e-50
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-49
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 5e-16
2ov7_A137 The First Domain Of The Ribosomal Protein L1 From T 7e-16
1dwu_A213 Ribosomal Protein L1 Length = 213 9e-15
2zkr_5212 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-10
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 5e-10
1mzp_A217 Structure Of The L1 Protuberance In The Ribosome Le 9e-09
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 5e-08
3e1b_Z213 Structure Of The 50s Subunit Of E. Coli Ribosome In 3e-06
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-04
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 4e-04
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/237 (82%), Positives = 217/237 (91%)
Query: 130 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLR 189
           DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLR
Sbjct: 115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLR 174
Query: 190 ATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDM 249
           ATVSLPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DM
Sbjct: 175 ATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDM 234
Query: 250 MVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADF 309
           M KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F
Sbjct: 235 MAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF 294
Query: 310 SEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 366
            E+DLLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct: 295 EEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 234 Back     alignment and structure
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 233 Back     alignment and structure
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 222 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 Back     alignment and structure
>pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 Back     alignment and structure
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 213 Back     alignment and structure
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 1e-140
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 1e-115
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 1e-115
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 1e-113
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 1e-90
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 5e-85
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 6e-84
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 3e-83
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 1e-76
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 3e-73
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 5e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
 Score =  402 bits (1035), Expect = e-140
 Identities = 235/361 (65%), Positives = 270/361 (74%), Gaps = 13/361 (3%)

Query: 6   TTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYP 65
             P SL L YA++    Q          FKP      SLC  L++   ER   KW+D   
Sbjct: 4   AAPPSLSLCYASSSFQYQQDPSFQ--THFKP-LLLNSSLCR-LTLNQRERSCLKWVDFTS 59

Query: 66  LRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAAL 125
            +Q+   +   +LAA +A         +    D +     +   AT    TKPKKGKAAL
Sbjct: 60  QKQSPKSVSFRVLAAVAA---------EAEVADMEEEEGESGGVATLPSPTKPKKGKAAL 110

Query: 126 PLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYND 185
           PLK DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYND
Sbjct: 111 PLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYND 170

Query: 186 QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIA 245
           QQLRATVSLPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA
Sbjct: 171 QQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIA 230

Query: 246 SPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG 305
           + DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFG
Sbjct: 231 TSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFG 290

Query: 306 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 365
           K +F E+DLLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PS
Sbjct: 291 KLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 350

Query: 366 N 366
           N
Sbjct: 351 N 351
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 189 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 100.0
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=4.4e-99  Score=740.97  Aligned_cols=350  Identities=67%  Similarity=0.993  Sum_probs=224.6

Q ss_pred             ccCCCCccceeecccCCCCCCCCCCccccccc-ccCcccccccccccccccccccccccccCcccccCCCCCCcchhhhh
Q 017710            3 TCGTTPSSLMLTYAATPVHPQDLTPSLSLLSF-KPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAA   81 (367)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
                      +||++||||||||||+++| ||||||  |+|| +|..+ ..+||||+|+ +++|++.+|++||++++...+ ...+++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   74 (352)
T 3bbo_D            1 MATAAPPSLSLCYASSSFQ-YQQDPS--FQTHFKPLLL-NSSLCRLTLN-QRERSCLKWVDFTSQKQSPKS-VSFRVLAA   74 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccCchhHHHhhhhccch-hccCch--hhhhcCccch-hhhcchhhhc-ccccchhhhhhhhhhhhcCCC-cceEEeee
Confidence            5999999999999999999 999999  8888 67644 5579999998 899999999999999999877 55678999


Q ss_pred             hhhhccccccCCccccccCCCccCceeeccccccCCCcCcccccccchhcccchHHHHHHhhhcCCCcCCHHHHHHHHHh
Q 017710           82 SAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQ  161 (367)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kr~~~~~~~~~~~~~Y~l~EAI~~lk~  161 (367)
                      +|||++++    ++||+|++   ++++++++ +|.+|||||.++++|+-+|++|||+++.+++|..+.|++.|||+++|+
T Consensus        75 ~~~~~~~~----~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~  146 (352)
T 3bbo_D           75 VAAEAEVA----DMEEEEGE---SGGVATLP-SPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQ  146 (352)
T ss_dssp             -------------------------------------------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHST
T ss_pred             hhhhhhhh----hHHHhhcc---CCcccccc-CCCCccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHh
Confidence            99999998    44444332   34455654 999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHcCCCccc
Q 017710          162 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD  241 (367)
Q Consensus       162 ~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~aeeAkeaGAd~VGgeeLIekIk~g~~~FD  241 (367)
                      .+.++|+||||++|+|+||+++++|++||+|.|||+++++.+|||||+|+++++|+++||++||++||+++|++||.+||
T Consensus       147 ~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIKkg~~dFD  226 (352)
T 3bbo_D          147 MSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFD  226 (352)
T ss_dssp             TCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCS
T ss_pred             ccccCCCceEEEEEEeCCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHHhchhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCchhHHHHhhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEEEcCCCeeEEeeeCCCCChhHHHHHHHHH
Q 017710          242 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAA  321 (367)
Q Consensus       242 ~~IAtpdmmp~L~~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r~dK~g~I~v~VGk~sfs~eeL~ENI~Av  321 (367)
                      +||||||||++|++|||+||||||||||+.|||+.||.++|+++++|+++||+++.|++|++||+++|++|||.|||.++
T Consensus       227 ~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Av  306 (352)
T 3bbo_D          227 KLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFAT  306 (352)
T ss_dssp             EEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHhhcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccccccccCCCC
Q 017710          322 VKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN  366 (367)
Q Consensus       322 l~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~~~~~~~~~~  366 (367)
                      +++|.+.+|++|+|.||+++||||||||+++||..++.+|+.||+
T Consensus       307 i~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~~l~d~~~p~~  351 (352)
T 3bbo_D          307 IKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN  351 (352)
T ss_dssp             HHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC---------
T ss_pred             HHHHHHhCcccccCceEEEEEEECCCCCCEEEEhhhcccccCCCC
Confidence            999999999999999999999999999999999999999999986
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 367
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 4e-73
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 2e-44
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 6e-42
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

 Score =  224 bits (573), Expect = 4e-73
 Identities = 109/223 (48%), Positives = 158/223 (70%), Gaps = 1/223 (0%)

Query: 135 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSL 194
           KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSL
Sbjct: 1   KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60

Query: 195 PKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA 254
           P G GK V+V  +A+GEK  EA+ AGAD VGG+++I++I  G+M+FD ++A+PD+M  V 
Sbjct: 61  PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120

Query: 255 S-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 313
           S LG+ILGPRGL+PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + 
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180

Query: 314 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 356
           L  N  A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N  
Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 223
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8e-66  Score=478.39  Aligned_cols=223  Identities=48%  Similarity=0.856  Sum_probs=217.2

Q ss_pred             hHHHHHHhhhcCCCcCCHHHHHHHHHhhcCCCCCcCeEEEEEEcccCCCCCcceeeeeecCCCCCCceEEEEEcCcccHH
Q 017710          135 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFN  214 (367)
Q Consensus       135 Kr~~~~~~~~~~~~~Y~l~EAI~~lk~~~~~kF~EsVel~I~L~id~kK~d~~iRg~V~LPh~~gk~~kV~Vfa~~e~ae  214 (367)
                      |||+++.+.+|..+.|++.|||+++|+.+.++|+||||++|+|++|+++++++|||+|.|||+++++.+|||||+++.++
T Consensus         1 kr~~~~~~~~d~~k~ysi~EAi~~lk~~~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~   80 (224)
T d1ad2a_           1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIK   80 (224)
T ss_dssp             CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHH
T ss_pred             CchHHHhhccCccCCcCHHHHHHHHHHcCCCCCCceEEEEEEEcccccccccccceeEEeccccccceeEEEecchHHHH
Confidence            57888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCeeccHHHHHHHHcCCCcccEEEeCchhHHHHh-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCceEEE
Q 017710          215 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYR  293 (367)
Q Consensus       215 eAkeaGAd~VGgeeLIekIk~g~~~FD~~IAtpdmmp~L~-~LGkiLGPKGLMPnpK~GTVt~DI~~~I~~~K~G~v~~r  293 (367)
                      +|+++||++||++||+++|++||.+||+|||+++|||.|+ .|||+||||||||||+.|||++|+.++|+++++|+++||
T Consensus        81 ~Ak~aGa~~vg~~eli~ki~~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r  160 (224)
T d1ad2a_          81 EAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFR  160 (224)
T ss_dssp             HHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEE
T ss_pred             HHHhcCccccCcHHHHHHHhcCCccchhHHhHHHHHHHHHHhhhhccCcccCCCCCCCCCcchhHHHHHHHHhCCeEEEe
Confidence            9999999999999999999999999999999999999996 799999999999999999999999999999999999999


Q ss_pred             EcCCCeeEEeeeCCCCChhHHHHHHHHHHHHHHHcCCCCCCCceeeEEEEeCCCCCcEEEeccc
Q 017710          294 ADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE  357 (367)
Q Consensus       294 ~dK~g~I~v~VGk~sfs~eeL~ENI~Avl~~I~~~kP~g~kg~~Iksi~IsSTMGPsi~I~~~~  357 (367)
                      +++.|+||++||+++|++|||.||+.+++++|.+++|.+++|.||+++|||||||||++|+..+
T Consensus       161 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~id~~s  224 (224)
T d1ad2a_         161 NDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS  224 (224)
T ss_dssp             CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC
T ss_pred             eCCCceeeeeeccccCCHHHHHHHHHHHHHHHHHhCccccCCCeEeEEEEECCCCCCEEeCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998753
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure