Citrus Sinensis ID: 017772

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPLSDTI
cEEEcccccEEEEEccccHHHHHHHHHccccEEEEEEEEEcEEcccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccEEEEccHHHHHHHccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHccccccc
cEEEEccccEEEEcccccHHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccccEEEEEccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEccccccccccEEEEEEEEEEEcccccccccccHHHcccccccccEEEccEccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccEEEEEEEEEEcccccHHHcccccHHHHHHHHHHHHHHHHHccccccccEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHccccccc
mklvtpakgtievskekdpdlfylARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLsenkhvkylhipyTDTVVVVTcnpvskwkgplkfkpkytkDEALQHLRDLYRESLKKYRADVmtakspdgtepdinelsFTELRDKLlaldplnkehVIKVNQAEAEFWRKsegyrvgwadeilgfdcggqqwvsetcfpsgtlaklsMKDLEYIEELKQLIekedipapapieqrwtarsqsvmspayssvqdDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHwakievpkDKEELAALQARLRKrfpvdsynkarkeldpnrilsnnmleklfplsdti
mklvtpakgtievskekdpdLFYLARCGLGGLGVVAEVTLQCVErqelvehttvsnikeikKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVskwkgplkfkpkytkdEALQHLRDLYRESLKKYRADVmtakspdgtepdineLSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARlrkrfpvdsynkarkeldpnrilsnnmleklfplsdti
MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPLSDTI
*******************DLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKY*******************LSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEK***********************AYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKD***LAALQA***************************************
MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPLS***
MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPLSDTI
MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPL****
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MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLFPLSDTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query366 2.2.26 [Sep-21-2011]
Q9SU56610 L-galactono-1,4-lactone d yes no 0.997 0.598 0.835 0.0
O47881600 L-galactono-1,4-lactone d N/A no 0.997 0.608 0.816 0.0
Q2RAP0583 L-galactono-1,4-lactone d yes no 0.978 0.614 0.772 1e-169
Q2QXY1583 L-galactono-1,4-lactone d yes no 0.978 0.614 0.769 1e-168
Q90YK3440 L-gulonolactone oxidase O N/A no 0.803 0.668 0.245 4e-12
P10867440 L-gulonolactone oxidase O yes no 0.150 0.125 0.329 7e-08
P58710440 L-gulonolactone oxidase O yes no 0.224 0.186 0.361 1e-07
Q8HXW0440 L-gulonolactone oxidase O no no 0.155 0.129 0.340 2e-07
Q3ZC33440 L-gulonolactone oxidase O yes no 0.155 0.129 0.340 2e-07
Q9HDX8461 D-arabinono-1,4-lactone o yes no 0.789 0.626 0.214 3e-05
>sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1 Back     alignment and function desciption
 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/365 (83%), Positives = 336/365 (92%)

Query: 1   MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI 60
           MKLVTPAKGTIE+S+EKDP+LF+LARCGLGGLGVVAEVTLQCV R ELVEHT VSN++EI
Sbjct: 245 MKLVTPAKGTIELSREKDPELFHLARCGLGGLGVVAEVTLQCVARHELVEHTYVSNLQEI 304

Query: 61  KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYR 120
           KKNHKKLLS NKHVKYL+IPYTDTVVVVTCNPVSKW GP K KPKYT DEA+QH+RDLYR
Sbjct: 305 KKNHKKLLSANKHVKYLYIPYTDTVVVVTCNPVSKWSGPPKDKPKYTTDEAVQHVRDLYR 364

Query: 121 ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS 180
           ES+ KYR      KSPD +EPDI ELSFTELRDKLLALDPLN  HV KVNQAEAEFW+KS
Sbjct: 365 ESIVKYRVQDSGKKSPDSSEPDIQELSFTELRDKLLALDPLNDVHVAKVNQAEAEFWKKS 424

Query: 181 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAP 240
           EGYRVGW+DEILGFDCGGQQWVSE+CFP+GTLA  SMKDLEYIEELK+LIEKE IPAPAP
Sbjct: 425 EGYRVGWSDEILGFDCGGQQWVSESCFPAGTLANPSMKDLEYIEELKKLIEKEAIPAPAP 484

Query: 241 IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQL 300
           IEQRWTARS+S +SPA+S+ +DDIFSWVGIIMYLPT D RQRK+ITDEFF+YRHL+QKQL
Sbjct: 485 IEQRWTARSKSPISPAFSTSEDDIFSWVGIIMYLPTADPRQRKDITDEFFHYRHLTQKQL 544

Query: 301 WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF 360
           WDQ+SAYEHWAKIE+PKDKEEL ALQAR+RKRFPVD+YNKAR+ELDPNRILSNNM+EKLF
Sbjct: 545 WDQFSAYEHWAKIEIPKDKEELEALQARIRKRFPVDAYNKARRELDPNRILSNNMVEKLF 604

Query: 361 PLSDT 365
           P+S T
Sbjct: 605 PVSTT 609
Involved in the biosynthesis of ascorbic acid. Required for the accumulation of respiratory complex I. Uses L-galactono-1,4-lactone and L-gulono-1,4-lactone as substrates, but not D-galactono-1,4-lactone, D-gulono-1,4-lactone, L-mannono-1,4-lactone or D-galactonic acid. Also active with phenazine methosulfate and 1,4-benzoquinone as electron acceptors.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 2EC: .EC: 3
>sp|O47881|GLDH_BRAOL L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1 Back     alignment and function description
>sp|Q2RAP0|GLDH1_ORYSJ L-galactono-1,4-lactone dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH1 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXY1|GLDH2_ORYSJ L-galactono-1,4-lactone dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH2 PE=2 SV=1 Back     alignment and function description
>sp|Q90YK3|GGLO_SCYTO L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO PE=2 SV=1 Back     alignment and function description
>sp|P10867|GGLO_RAT L-gulonolactone oxidase OS=Rattus norvegicus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|Q8HXW0|GGLO_PIG L-gulonolactone oxidase OS=Sus scrofa GN=GULO PE=2 SV=3 Back     alignment and function description
>sp|Q3ZC33|GGLO_BOVIN L-gulonolactone oxidase OS=Bos taurus GN=GULO PE=2 SV=3 Back     alignment and function description
>sp|Q9HDX8|ALO_SCHPO D-arabinono-1,4-lactone oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alo1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
226935214 605 mitochondrial L-galactono-1,4-lactone de 1.0 0.604 0.986 0.0
359482204 609 PREDICTED: L-galactono-1,4-lactone dehyd 1.0 0.600 0.882 0.0
297739899443 unnamed protein product [Vitis vinifera] 1.0 0.826 0.882 0.0
224589061 611 putative L-galactono-1,4-lactone dehydro 1.0 0.599 0.882 0.0
255581385 603 galactono-1,4-lactone dehydrogenase, put 1.0 0.606 0.871 0.0
297815976 610 L-galactono-1,4-lactone dehydorogenase [ 0.997 0.598 0.838 0.0
7707281 610 L-Galactono-1,4-lactone dehydorogenase [ 0.997 0.598 0.835 0.0
15228293 610 L-galactono-1,4-lactone dehydrogenase [A 0.997 0.598 0.835 0.0
26450910 610 putative L-galactono-1,4-lactone dehydro 0.997 0.598 0.832 0.0
66279530 586 L-galactono-1,4-lactone dehydrogenase [C 0.991 0.619 0.830 0.0
>gi|226935214|gb|ACO92659.1| mitochondrial L-galactono-1,4-lactone dehydrogenase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/366 (98%), Positives = 363/366 (99%)

Query: 1   MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI 60
           MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI
Sbjct: 240 MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI 299

Query: 61  KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYR 120
           KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGP KFKPKYTK+EALQHL DLYR
Sbjct: 300 KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPPKFKPKYTKNEALQHLPDLYR 359

Query: 121 ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS 180
           ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS
Sbjct: 360 ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS 419

Query: 181 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAP 240
           EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEY EELKQLIEKEDIPAPAP
Sbjct: 420 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYTEELKQLIEKEDIPAPAP 479

Query: 241 IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQL 300
           IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHL+QKQL
Sbjct: 480 IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLTQKQL 539

Query: 301 WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF 360
           WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF
Sbjct: 540 WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF 599

Query: 361 PLSDTI 366
           PLSDTI
Sbjct: 600 PLSDTI 605

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482204|ref|XP_002274214.2| PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739899|emb|CBI30081.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224589061|gb|ACN59217.1| putative L-galactono-1,4-lactone dehydrogenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581385|ref|XP_002531501.1| galactono-1,4-lactone dehydrogenase, putative [Ricinus communis] gi|223528888|gb|EEF30888.1| galactono-1,4-lactone dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297815976|ref|XP_002875871.1| L-galactono-1,4-lactone dehydorogenase [Arabidopsis lyrata subsp. lyrata] gi|297321709|gb|EFH52130.1| L-galactono-1,4-lactone dehydorogenase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7707281|dbj|BAA95212.1| L-Galactono-1,4-lactone dehydorogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15228293|ref|NP_190376.1| L-galactono-1,4-lactone dehydrogenase [Arabidopsis thaliana] gi|75207882|sp|Q9SU56.1|GLDH_ARATH RecName: Full=L-galactono-1,4-lactone dehydrogenase, mitochondrial; Flags: Precursor gi|4678335|emb|CAB41146.1| L-galactono-1, 4-lactone dehydrogenase-like protein [Arabidopsis thaliana] gi|332644826|gb|AEE78347.1| L-galactono-1,4-lactone dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26450910|dbj|BAC42562.1| putative L-galactono-1,4-lactone dehydrogenase [Arabidopsis thaliana] gi|29028962|gb|AAO64860.1| At3g47930 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|66279530|gb|AAS58446.2| L-galactono-1,4-lactone dehydrogenase [Capsicum annuum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
TAIR|locus:2097865610 GLDH ""L-galactono-1,4-lactone 0.997 0.598 0.835 2e-168
UNIPROTKB|Q90YK3440 GULO "L-gulonolactone oxidase" 0.267 0.222 0.297 1.4e-11
UNIPROTKB|F1LZB1438 Gulo "L-gulonolactone oxidase" 0.267 0.223 0.316 9.3e-11
RGD|620701440 Gulo "gulonolactone (L-) oxida 0.240 0.2 0.329 1.6e-10
UNIPROTKB|P10867440 Gulo "L-gulonolactone oxidase" 0.240 0.2 0.329 1.6e-10
UNIPROTKB|F1LR61439 Gulo "L-gulonolactone oxidase" 0.240 0.200 0.329 2.1e-10
MGI|MGI:1353434440 Gulo "gulonolactone (L-) oxida 0.224 0.186 0.361 2.6e-10
UNIPROTKB|F1PGS8440 LOC486100 "Uncharacterized pro 0.237 0.197 0.382 2.8e-10
UNIPROTKB|Q3ZC33440 GULO "L-gulonolactone oxidase" 0.237 0.197 0.382 3.1e-10
UNIPROTKB|Q8HXW0440 GULO "L-gulonolactone oxidase" 0.237 0.197 0.370 4.2e-10
TAIR|locus:2097865 GLDH ""L-galactono-1,4-lactone dehydrogenase"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
 Identities = 305/365 (83%), Positives = 336/365 (92%)

Query:     1 MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI 60
             MKLVTPAKGTIE+S+EKDP+LF+LARCGLGGLGVVAEVTLQCV R ELVEHT VSN++EI
Sbjct:   245 MKLVTPAKGTIELSREKDPELFHLARCGLGGLGVVAEVTLQCVARHELVEHTYVSNLQEI 304

Query:    61 KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYR 120
             KKNHKKLLS NKHVKYL+IPYTDTVVVVTCNPVSKW GP K KPKYT DEA+QH+RDLYR
Sbjct:   305 KKNHKKLLSANKHVKYLYIPYTDTVVVVTCNPVSKWSGPPKDKPKYTTDEAVQHVRDLYR 364

Query:   121 ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS 180
             ES+ KYR      KSPD +EPDI ELSFTELRDKLLALDPLN  HV KVNQAEAEFW+KS
Sbjct:   365 ESIVKYRVQDSGKKSPDSSEPDIQELSFTELRDKLLALDPLNDVHVAKVNQAEAEFWKKS 424

Query:   181 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAP 240
             EGYRVGW+DEILGFDCGGQQWVSE+CFP+GTLA  SMKDLEYIEELK+LIEKE IPAPAP
Sbjct:   425 EGYRVGWSDEILGFDCGGQQWVSESCFPAGTLANPSMKDLEYIEELKKLIEKEAIPAPAP 484

Query:   241 IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQL 300
             IEQRWTARS+S +SPA+S+ +DDIFSWVGIIMYLPT D RQRK+ITDEFF+YRHL+QKQL
Sbjct:   485 IEQRWTARSKSPISPAFSTSEDDIFSWVGIIMYLPTADPRQRKDITDEFFHYRHLTQKQL 544

Query:   301 WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF 360
             WDQ+SAYEHWAKIE+PKDKEEL ALQAR+RKRFPVD+YNKAR+ELDPNRILSNNM+EKLF
Sbjct:   545 WDQFSAYEHWAKIEIPKDKEELEALQARIRKRFPVDAYNKARRELDPNRILSNNMVEKLF 604

Query:   361 PLSDT 365
             P+S T
Sbjct:   605 PVSTT 609
GO:0003824 "catalytic activity" evidence=IEA
GO:0003885 "D-arabinono-1,4-lactone oxidase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0016633 "galactonolactone dehydrogenase activity" evidence=IEA;IDA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009536 "plastid" evidence=IDA
GO:0080049 "L-gulono-1,4-lactone dehydrogenase activity" evidence=IDA
GO:0009853 "photorespiration" evidence=RCA
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=TAS
UNIPROTKB|Q90YK3 GULO "L-gulonolactone oxidase" [Scyliorhinus torazame (taxid:75743)] Back     alignment and assigned GO terms
UNIPROTKB|F1LZB1 Gulo "L-gulonolactone oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|620701 Gulo "gulonolactone (L-) oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P10867 Gulo "L-gulonolactone oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR61 Gulo "L-gulonolactone oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1353434 Gulo "gulonolactone (L-) oxidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGS8 LOC486100 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZC33 GULO "L-gulonolactone oxidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXW0 GULO "L-gulonolactone oxidase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O47881GLDH_BRAOL1, ., 3, ., 2, ., 30.81640.99720.6083N/Ano
Q2RAP0GLDH1_ORYSJ1, ., 3, ., 2, ., 30.77260.97810.6140yesno
Q2QXY1GLDH2_ORYSJ1, ., 3, ., 2, ., 30.76980.97810.6140yesno
Q9SU56GLDH_ARATH1, ., 3, ., 2, ., 30.83560.99720.5983yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__1148__AT3G47930.1
annotation not avaliable (610 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.7__746__AT4G33670.1
annotation not avaliable (319 aa)
     •• 0.633
scaffold_403530.1
annotation not avaliable (246 aa)
      • 0.426
fgenesh2_kg.3__232__AT3G02870.1
annotation not avaliable (271 aa)
      • 0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
TIGR01676541 TIGR01676, GLDHase, galactonolactone dehydrogenase 0.0
PLN02465573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 0.0
pfam04030258 pfam04030, ALO, D-arabinono-1,4-lactone oxidase 2e-17
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 4e-15
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 8e-11
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information 
 Score =  660 bits (1705), Expect = 0.0
 Identities = 294/360 (81%), Positives = 331/360 (91%), Gaps = 3/360 (0%)

Query: 1   MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEI 60
           MKLVTPAKGTIE+SK+KDP+LF+LARCGLGGLGVVAEVTLQCVERQELVEHT +SN+K+I
Sbjct: 184 MKLVTPAKGTIEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFISNMKDI 243

Query: 61  KKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYR 120
           KKNHKK L++NKHVKYLHIPYTD +VVVTCNP+SK +GP KFKPKYT +EA+QH+RDLYR
Sbjct: 244 KKNHKKFLADNKHVKYLHIPYTDAIVVVTCNPISKSRGPPKFKPKYTSEEAIQHVRDLYR 303

Query: 121 ESLKKYRADVMTAKSPDGTEPDINELSFTELRDKLLALDPLNKEHVIKVNQAEAEFWRKS 180
           ESLKKYR  V  + S    EPDI+E SFTELRDKLLALDPLNKEHVI++N+AEAEFWRKS
Sbjct: 304 ESLKKYRGQVADSASE---EPDIDEFSFTELRDKLLALDPLNKEHVIEINKAEAEFWRKS 360

Query: 181 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAPAP 240
           EGY+VGW+DEILGFDCGG QWVSETCFP+GTLAK +MKD+EYIEELKQLIEKE+IPAPAP
Sbjct: 361 EGYKVGWSDEILGFDCGGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKENIPAPAP 420

Query: 241 IEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQL 300
           IEQRWTA S+S MSPA SS  DDIFSWVGIIMYLPTMDARQRKEIT+EFF+YRHL+Q  L
Sbjct: 421 IEQRWTACSKSPMSPASSSADDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQALL 480

Query: 301 WDQYSAYEHWAKIEVPKDKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF 360
           WD +SA+EHWAKIEVPKDK+ELAALQARL+K+FPVD+ NKARK LDPN+ILSNN LEKLF
Sbjct: 481 WDHFSAFEHWAKIEVPKDKDELAALQARLKKKFPVDASNKARKALDPNKILSNNKLEKLF 540

This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD. Length = 541
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|217852 pfam04030, ALO, D-arabinono-1,4-lactone oxidase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 100.0
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 100.0
PLN00107257 FAD-dependent oxidoreductase; Provisional 100.0
PLN02441525 cytokinin dehydrogenase 99.84
PF09129321 Chol_subst-bind: Cholesterol oxidase, substrate-bi 99.47
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.29
KOG1231505 consensus Proteins containing the FAD binding doma 99.26
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 98.78
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 98.67
PRK11230499 glycolate oxidase subunit GlcD; Provisional 98.39
PLN02805555 D-lactate dehydrogenase [cytochrome] 98.3
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 98.1
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.92
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 95.13
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 94.87
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 94.72
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 94.14
KOG1232511 consensus Proteins containing the FAD binding doma 92.83
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 90.71
PRK11230499 glycolate oxidase subunit GlcD; Provisional 90.68
PLN02805555 D-lactate dehydrogenase [cytochrome] 89.8
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 89.03
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 86.53
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 85.92
PRK11183564 D-lactate dehydrogenase; Provisional 83.77
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=4.5e-67  Score=519.14  Aligned_cols=354  Identities=82%  Similarity=1.307  Sum_probs=289.6

Q ss_pred             CEEEcCCCCEEEEcCCCChhhhHHhhcCCCCeEEEEEEEEEeEecceeEEEEEeccHHHHHHHHHHHHhcCCcEEEEEec
Q 017772            1 MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVSNIKEIKKNHKKLLSENKHVKYLHIP   80 (366)
Q Consensus         1 ~~lV~~~G~i~~~s~~~~~dLf~A~~~~lG~lGVit~vtl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p   80 (366)
                      ++||+|+|++++||+++|||||||++||+|+|||||+|||||+|++.+.......+++++++.+++++++++|++++|||
T Consensus       184 l~lVta~G~vv~~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~~~~~e~l~~~~~~~~~~~h~~f~wfP  263 (541)
T TIGR01676       184 MKLVTPAKGTIEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFISNMKDIKKNHKKFLADNKHVKYLHIP  263 (541)
T ss_pred             EEEEECCCCEEEECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEecCHHHHHHHHHHHHhcCCcEEEEEEc
Confidence            58999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             cCCeEEEEEecCCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHhhhhccccCCCC--CCCCcccchhhhHHHhhhhhc
Q 017772           81 YTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPD--GTEPDINELSFTELRDKLLAL  158 (366)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~  158 (366)
                      +++.+++++.|+++.+..+++..++|..+..++.+.+++...++++.+.     ..+  ...+.++...+..++..+..+
T Consensus       264 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~~~  338 (541)
T TIGR01676       264 YTDAIVVVTCNPISKSRGPPKFKPKYTSEEAIQHVRDLYRESLKKYRGQ-----VADSASEEPDIDEFSFTELRDKLLAL  338 (541)
T ss_pred             CCCceeEEEcCCCCcccCCCCccccccchhhhhhhhhhhhhhhhhhhcc-----cccccccccchhhhHHHHHHHHHhhC
Confidence            9999999999998754433333344555555554445554444433100     001  123445566777888887777


Q ss_pred             CCccchhhhhhhhhhhhhhccCCCeeeecCccccccccCCCcccccccccCCccccccccHHHHHHHHHHHHHhCCCCCC
Q 017772          159 DPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQLIEKEDIPAP  238 (366)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~e~~f~~~e~~vP~~~~~~~l~~i~~~i~~~~~~~~  238 (366)
                      .++.|.+++++|++...+|..+.+.++++|+++|+++|++.|+++||++|.....-|-.++.++|++|+++|++++.+++
T Consensus       339 ~~l~~~~~~~in~~~~~~~~~s~~~~v~~S~~vf~~~~~f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~~~~~  418 (541)
T TIGR01676       339 DPLNKEHVIEINKAEAEFWRKSEGYKVGWSDEILGFDCGGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKENIPAP  418 (541)
T ss_pred             CcccchhHHHHHHHHHHHhhcCCceEeCcHHHhcCcccccceEEEEEEEecccccccccchHHHHHHHHHHHHhcCCCCC
Confidence            77777888899886655776677789999999999999999988764333222222222779999999999999999999


Q ss_pred             CceEEEeecCCCCCccCCCCCCCCCceeEEEEEEeecCCchhhhhhhhHHHHhhHHHHHHHHHhhc-CCccccccccCCC
Q 017772          239 APIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQY-SAYEHWAKIEVPK  317 (366)
Q Consensus       239 ~~i~vRf~~~d~~~LSp~~~~~~d~~~~~i~v~~y~p~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-gGRpHWgK~~~~~  317 (366)
                      ||||+||+++|++||||+|++++|+++|||+|+||.|..+..+|++++++|+.|++.. +.++.++ ||||||||.|.+.
T Consensus       419 fPiEvR~ta~Dd~~LSpa~~r~~~~~s~~I~v~~y~~~~~~~~~~~~~~~~f~~~~~~-e~i~~~~ygGRPHWgK~h~~~  497 (541)
T TIGR01676       419 APIEQRWTACSKSPMSPASSSADDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLT-QALLWDHFSAFEHWAKIEVPK  497 (541)
T ss_pred             CCeEEEeecCCCcccCCccCCCCCCceEEEEEEecCCCCChhhhhhhHHHHHhhhHHH-HHHHHHhcCCccCcceecCCC
Confidence            9999999999999999999999877789999999998767667788888999765655 4666665 9999999999994


Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHhcCCCCCCCcchHHhhc
Q 017772          318 DKEELAALQARLRKRFPVDSYNKARKELDPNRILSNNMLEKLF  360 (366)
Q Consensus       318 ~~~~~~~~~~~~~~~YP~~~F~~~r~~lDP~g~F~N~~~~rll  360 (366)
                      +.+++..+...++++|||++|+++|+++||+|+|+|+|++++|
T Consensus       498 ~~~~l~~~yprl~~~YP~d~F~~~R~~lDP~g~F~N~yL~~lf  540 (541)
T TIGR01676       498 DKDELAALQARLKKKFPVDASNKARKALDPNKILSNNKLEKLF  540 (541)
T ss_pred             CHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCCccccHHHHHhh
Confidence            4667777777788888889999999999999999999999997

This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 6e-50
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 8e-44
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-25
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-05
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 9e-05
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 7e-04
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
 Score =  174 bits (443), Expect = 6e-50
 Identities = 48/399 (12%), Positives = 117/399 (29%), Gaps = 52/399 (13%)

Query: 1   MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCVERQELVEHTTVS----- 55
           +  V     T  +   +  D          G   +  VT+Q          +        
Sbjct: 177 LTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRE 236

Query: 56  ---NIKEIKKNHKKLLSENKHVKYLHIPYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEAL 112
                    +  +K ++E+   + +  P+T+   +               KP  + +   
Sbjct: 237 LFAPKGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVS-------PTKPDSSNEVGS 289

Query: 113 QHLRDLYRESLKKYRADVMTAKSPDGTE-PDINELSFTELRDKLLALDPLNKEHVIKVNQ 171
                       + R              P+        +      + PL    + ++ +
Sbjct: 290 LGSAGSLVGKPPQAREVSGPYNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITK 349

Query: 172 AEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDL----EYIEELK 227
                   ++ +  GW+ ++  +       ++E      T        +    E+  E  
Sbjct: 350 LGLAATNANDIW--GWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERI 407

Query: 228 QLI-EKEDIPAPAPIEQRWTARSQSVMSPAYS--------------SVQDDIFSWVGIIM 272
           +    K + P   P+E R     Q+      S                  D+  W+ ++ 
Sbjct: 408 EFYRAKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLG 467

Query: 273 YLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYEHWAK-----IEVPKDKEELA-ALQ 326
              T    +     +++     +      D  +    W+K      +   D + +   ++
Sbjct: 468 VPGTPGMFEFYREMEQW-----MRSHYNNDDATFRPEWSKGWAFGPDPYTDNDIVTNKMR 522

Query: 327 ARLRKRFPV-DSYNKAR---KELDPNRILSNNMLEKLFP 361
           A   +  P  ++++ AR    ++DP+R+ +N  ++KL P
Sbjct: 523 ATYIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLLP 561
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.69
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.05
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 98.86
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 98.81
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 98.76
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 98.72
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 98.6
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 98.54
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 98.53
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 98.53
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 98.47
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 98.35
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 98.2
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 98.18
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 98.14
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 98.14
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 97.88
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 97.35
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 97.32
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 96.42
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 96.3
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 96.03
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 96.01
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 95.6
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 88.41
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 86.79
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 85.74
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 81.04
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
Probab=100.00  E-value=3.7e-47  Score=378.73  Aligned_cols=298  Identities=14%  Similarity=0.141  Sum_probs=208.2

Q ss_pred             CEEEcCCCCEEEEcCC-CChhhhHHhhcCCCCeEEEEEEEEEeEecc---eeEEEEEeccHHHHHHHHHHHHhcCCcEEE
Q 017772            1 MKLVTPAKGTIEVSKE-KDPDLFYLARCGLGGLGVVAEVTLQCVERQ---ELVEHTTVSNIKEIKKNHKKLLSENKHVKY   76 (366)
Q Consensus         1 ~~lV~~~G~i~~~s~~-~~~dLf~A~~~~lG~lGVit~vtl~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (366)
                      ++||++||++++|+++ +|+|||||++||+|++||||++||++.|..   .........+++++++.+++...+++++++
T Consensus       169 ~evV~~dG~v~~~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  248 (481)
T 4feh_A          169 MDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSEARYTYSS  248 (481)
T ss_dssp             EEEECTTSCEEEECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSSGGGGCSEEE
T ss_pred             EEEEeCCCCEEEeCCCCCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHHHhcCCcEEE
Confidence            5899999999999998 999999999999999999999999999953   344456778899999998877777889999


Q ss_pred             EEe------ccCCeEEEEEecCCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHhhhhccccCCCCCCCC--cccchhh
Q 017772           77 LHI------PYTDTVVVVTCNPVSKWKGPLKFKPKYTKDEALQHLRDLYRESLKKYRADVMTAKSPDGTEP--DINELSF  148 (366)
Q Consensus        77 ~w~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~  148 (366)
                      +||      |+++++++++.++++....+.+.......  ....  ..               ...|...|  .+|+...
T Consensus       249 ~w~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~---------------~~vp~~~p~~~l~~~~~  309 (481)
T 4feh_A          249 AWFDAISAPPKLGRAAVSRGRLATVEQLPAKLRSEPLK--FDAP--QL---------------LTLPDVFPNGLANKYTF  309 (481)
T ss_dssp             EEECCSSCTTSTTCEEEEEEEECCGGGSCGGGGGSTTC--CC--------------------------------------
T ss_pred             EEEeccCCCCCCCeEEEEeCCcCcccccccccccCccc--cccc--cc---------------cCCCccCcHHHHhHHHH
Confidence            999      67899999999987643222111000000  0000  00               00011111  1222222


Q ss_pred             hHHHhhhhhcCCccchhhhhhhhhhhhhhccCCCeeeecCccccccccCCCcccccccccCCccccccccHHHHHHHHHH
Q 017772          149 TELRDKLLALDPLNKEHVIKVNQAEAEFWRKSEGYRVGWADEILGFDCGGQQWVSETCFPSGTLAKLSMKDLEYIEELKQ  228 (366)
Q Consensus       149 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~e~~f~~~e~~vP~~~~~~~l~~i~~  228 (366)
                      ..++.......+   ...+.+.. ...|+.  |.+.++.|+++|+ .++|.         ++||+||.+ +.++|++|++
T Consensus       310 ~~~~~~~~~~~~---~~~~~~~~-~~~~~~--p~d~v~~~nr~yg-~~~f~---------q~e~~vP~~-~~~al~~l~~  372 (481)
T 4feh_A          310 GPIGELWYRKSG---TYRGKVQN-LTQFYH--PLDMFGEWNRAYG-PAGFL---------QYQFVIPTE-AVDEFKKIIG  372 (481)
T ss_dssp             --------CCSC---CEEEEEEE-HHHHHC---------CHHHHT-TTSEE---------EEEEEEETT-CHHHHHHHHH
T ss_pred             HHHHHHHHhhCc---cccccccc-ceeeec--hhhhccccccccC-CCCcE---------EEEEEeccc-HHHHHHHHHH
Confidence            222221111111   01111111 123343  7889999999998 55543         347999999 9999999999


Q ss_pred             HHHhCCCCCCCceEEEeecCCCCCccCCCCCCCCCceeEEEEEEeecCCchhhhhhhhHHHHhhHHHHHHHHHhhcCCcc
Q 017772          229 LIEKEDIPAPAPIEQRWTARSQSVMSPAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWDQYSAYE  308 (366)
Q Consensus       229 ~i~~~~~~~~~~i~vRf~~~d~~~LSp~~~~~~d~~~~~i~v~~y~p~~~~~~~~~~~~~~~~~~~~~e~~~~~~~gGRp  308 (366)
                      +|++++.++++||++||+++|++|||+++++      +.|++++|. ..+       ..+|+   +.+ |+++.++||||
T Consensus       373 ~i~~~~~~~~~~v~~R~~~~d~~~LS~~~~~------~tlal~~~~-~~~-------~~~~~---~~l-e~i~~~~gGRp  434 (481)
T 4feh_A          373 VIQASGHYSFLNVFKLFGPRNQAPLSFPIPG------WNICVDFPI-KDG-------LGKFV---SEL-DRRVLEFGGRL  434 (481)
T ss_dssp             HHHHTTCCCSCCEEEEECCCCSCTTCCCCSE------EEEEEEEEC-CTT-------HHHHH---HHH-HHHHHHTTCEE
T ss_pred             HHHhcCCCceEEEEEEEeCCCCccCCCCCCc------eEEEEEccC-Ccc-------HHHHH---HHH-HHHHHHcCCEe
Confidence            9999999999999999999999999987664      349999763 121       34666   557 49999999999


Q ss_pred             ccccccCCCchHHHHHHHHHHHhcCC-hhHHHHHHHhcCCCCCCCcchHHhhc
Q 017772          309 HWAKIEVPKDKEELAALQARLRKRFP-VDSYNKARKELDPNRILSNNMLEKLF  360 (366)
Q Consensus       309 HWgK~~~~~~~~~~~~~~~~~~~~YP-~~~F~~~r~~lDP~g~F~N~~~~rll  360 (366)
                      ||||++.++        +++++++|| |++|+++|+++||+|+|+|+|++|+-
T Consensus       435 hw~K~~~~~--------~~~~~~~YP~~~~F~~lr~~~DP~g~F~n~~~rr~~  479 (481)
T 4feh_A          435 YTAKDSRTT--------AETFHAMYPRVDEWISVRRKVDPLRVFASDMARRLE  479 (481)
T ss_dssp             CGGGCSSCC--------HHHHHHHCTTHHHHHHHHHHHCTTCCBCCHHHHHTT
T ss_pred             cchhccCCC--------HHHHHHhCcCHHHHHHHHHhhCCccccCCHHHHhhh
Confidence            999999999        899999999 99999999999999999999999973
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 366
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-07
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 4e-07
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 1   MKLVTPAKGTIEVSKEKDPDLFYLARCGLGGLGVVAEVTLQCV 43
           M ++T     +  SK+ + DLF     GLG  GV+    +   
Sbjct: 162 MDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d2i0ka1340 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.45
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 94.87
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 92.48
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 86.9
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 86.61
d1n8va_101 Chemosensory protein Csp2 {Cabbage moth (Mamestra 81.95
>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cholesterol oxidase
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.45  E-value=3.4e-12  Score=110.96  Aligned_cols=165  Identities=19%  Similarity=0.355  Sum_probs=103.2

Q ss_pred             CCeeeecCccccccccCCCcccccccccCCcccc--ccccHHHHHHHHHHHHH--------hCCCCCCCceEEEeecCCC
Q 017772          181 EGYRVGWADEILGFDCGGQQWVSETCFPSGTLAK--LSMKDLEYIEELKQLIE--------KEDIPAPAPIEQRWTARSQ  250 (366)
Q Consensus       181 ~~~~~~~s~~~~~~~~~~~~~~~e~~f~~~e~~v--P~~~~~~~l~~i~~~i~--------~~~~~~~~~i~vRf~~~d~  250 (366)
                      ..+-.|+|.+++.+-+..     -.+....-|+|  -+++...+|.++.++++        +..++++.|||||.+.=|+
T Consensus       136 s~DlWGwSk~vl~Yir~T-----TLRvTanGyAVltrR~nvqrvI~eF~~~y~~r~~~Y~a~G~yP~NgPvEIRvtGlD~  210 (340)
T d2i0ka1         136 ANDIWGWSKDVQFYIKAT-----TLRLTEGGGAVVTSRANIATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQ  210 (340)
T ss_dssp             CSEEEEEHHHHHCCCCTT-----SCCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCEEEEEEECCC
T ss_pred             cccccCccccceeeeccc-----eEEEecCCeEEEeeHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEecCCC
Confidence            446777887776654431     23333445666  35566666666655443        3678999999999997555


Q ss_pred             C-----------Ccc---CCCCCCCCCceeEEEEEEeecCCchhhhhhhhHHHHhhHHHHHHHHHh-hcCC-----cccc
Q 017772          251 S-----------VMS---PAYSSVQDDIFSWVGIIMYLPTMDARQRKEITDEFFNYRHLSQKQLWD-QYSA-----YEHW  310 (366)
Q Consensus       251 ~-----------~LS---p~~~~~~d~~~~~i~v~~y~p~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~gG-----RpHW  310 (366)
                      .           .||   |-..++.=++.-|++|... |..+.      ..+|+   +++| +.|. .|.|     ||.|
T Consensus       211 p~~~gv~ga~~P~lSAlrprpD~peWd~AiWldvLtl-PGTp~------a~~FY---rEiE-qwm~~ny~g~~AtvRpEW  279 (340)
T d2i0ka1         211 AADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGV-PGTPG------MFEFY---REME-QWMRSHYNNDDATFRPEW  279 (340)
T ss_dssp             GGGCCSCCSCSCSSCTTCCCTTCTTCCEEEEEEEEEC-TTCTT------HHHHH---HHHH-HHHHHHSBSSSEEEECCT
T ss_pred             HHHcCCCCCCCCchhccCCCCCCCCcceeeeeeeccC-CCCcc------HHHHH---HHHH-HHHHhccCCCCceecccc
Confidence            1           234   3222221123458888775 65443      24666   5575 5655 4777     9999


Q ss_pred             ccccCCCch-H-HHHHHHHHHHhcC----C----hhHHHHHHHhcCCCCCCCcchHHhhcC
Q 017772          311 AKIEVPKDK-E-ELAALQARLRKRF----P----VDSYNKARKELDPNRILSNNMLEKLFP  361 (366)
Q Consensus       311 gK~~~~~~~-~-~~~~~~~~~~~~Y----P----~~~F~~~r~~lDP~g~F~N~~~~rll~  361 (366)
                      .|-+..++. + +-..+...+.+.|    |    |+.-.+...++||+++|+|+|+++|+.
T Consensus       280 SKGWayt~~aw~D~~~l~~~ip~~~~~G~p~~~~Wd~A~~~l~~~Dp~rvFss~~Ld~Lmp  340 (340)
T d2i0ka1         280 SKGWAFGPDPYTDNDIVTNKMRATYIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLLP  340 (340)
T ss_dssp             TSCCSCSSSTTCCHHHHHTHHHHHTTTTSCTTSSHHHHHHHHHHHCTTCCSCCHHHHHHCC
T ss_pred             ccccccCCCcccccchHhhhhhHHHhcCCCCCCCHHHHHHHHhccCchhhhcchhHHhhCC
Confidence            998776421 1 1122223345555    3    888888889999999999999999973
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]} Back     information, alignment and structure