Citrus Sinensis ID: 017838

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
METIPSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLAKRCA
cccccccccHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEcccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEcccHHHHHHcccccccccEEEEcccccEEEEEEcccccccccEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccc
cccccccccHHHHHHcccccHHHHHHHHccccccccHcEcccccccccccccccccccccEcEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccccccHHHHEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEcccccccEcccHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHcccc
metipssdrmselkafdetkagvkglvdsgittiprifiqdqhtkhkfddkpifrdpkinipiidfegihkdaslRSQAVDQIRSACEKWGFfqainhgiptsvLDQAIDGIRRFFEKDVEVKKKYFsrdyskkirycsninlfsapilywkdtlsfdlgrdfsspeelpeACRDIMITYNNQMWKTGEILCELLSEalglspnylkdigcveemtignnyypecpqpeltigvtthsdpgFVTVLIQDRIgglqvfcedqwfditpvpgaLVVNLGYMMQLITNDKFKSAYHRVLSkkegsrisigsffmnnscsrrygpikdllsdenpplypeitlkdiynnqsstegLSALEKLKLAKRCA
metipssdrmselkafdetkagvkglvdsgiTTIPRifiqdqhtkhkfddkpifrdPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKdvevkkkyfsrdyskkiryCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSkkegsrisigSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSsteglsaleklklakrca
METIPSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLAKRCA
********************AGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLS****PLYPEITLKDIY**********************
**********SELKAFDETKAGVKGLVDSGITTIPRIFIQDQ***************KINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY***D**KKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLA****
***********ELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLAKRCA
*****SSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKL*****
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METIPSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLAKRCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.920 0.837 0.487 1e-94
Q84MB3365 1-aminocyclopropane-1-car yes no 0.978 0.978 0.491 3e-94
Q9LTH7366 1-aminocyclopropane-1-car no no 0.898 0.896 0.508 4e-93
Q8H1S4369 1-aminocyclopropane-1-car no no 0.978 0.967 0.476 4e-92
Q9LTH8364 1-aminocyclopropane-1-car no no 0.947 0.950 0.494 2e-91
P93824360 1-aminocyclopropane-1-car no no 0.953 0.966 0.481 7e-89
Q9C5K7369 1-aminocyclopropane-1-car no no 0.967 0.956 0.479 2e-88
Q43383398 1-aminocyclopropane-1-car no no 0.961 0.881 0.462 5e-86
Q9LSW7365 1-aminocyclopropane-1-car no no 0.958 0.958 0.460 9e-85
P10967363 1-aminocyclopropane-1-car N/A no 0.956 0.961 0.476 2e-84
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/347 (48%), Positives = 237/347 (68%), Gaps = 11/347 (3%)

Query: 3   TIPSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPK-INI 61
           T+   + + ELKAFDETKAGVKG+VD+GIT IPRIFI DQ      D   + R    I I
Sbjct: 35  TLSEEESLRELKAFDETKAGVKGIVDTGITKIPRIFI-DQ--PKNLDRISVCRGKSDIKI 91

Query: 62  PIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVE 121
           P+I+  G+  ++ +R + V++I  A EK+GFFQ +NHGIP  V+D+ +DG+R+F E+D +
Sbjct: 92  PVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQ 151

Query: 122 VKKKYFSRD-YSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITY 180
           +K++Y+SRD ++K   Y SN  L       W+DT+   +  +   P+E P+ CRDI++ Y
Sbjct: 152 IKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQEFPDVCRDILMKY 211

Query: 181 NNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDP 240
           +N +   G IL ELLSEALGL PN+L+++ C E + +  +YYP CPQPELT G + HSD 
Sbjct: 212 SNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDS 271

Query: 241 GFVTVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKE 300
           GF+T+L+QD+IGGLQ+  E+QW D+  +PGALV+N+  ++QLITNDKFKS  HRVL+ K 
Sbjct: 272 GFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKV 331

Query: 301 GSRISIGSFF------MNNSCSRRYGPIKDLLSDENPPLYPEITLKD 341
           G RIS+   F            R YGPIK+L+S+ENPP+Y E+T+KD
Sbjct: 332 GPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKD 378
Catalyzes the C4-hydroxylation of desacetoxyvindoline.
Catharanthus roseus (taxid: 4058)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 0
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
147787952373 hypothetical protein VITISV_000872 [Viti 0.958 0.938 0.529 1e-108
359477763 684 PREDICTED: 1-aminocyclopropane-1-carboxy 0.958 0.511 0.526 1e-107
147845654373 hypothetical protein VITISV_017626 [Viti 0.958 0.938 0.523 1e-107
225433035373 PREDICTED: 1-aminocyclopropane-1-carboxy 0.958 0.938 0.518 1e-106
255576828364 Desacetoxyvindoline 4-hydroxylase, putat 0.964 0.967 0.532 1e-106
147822811373 hypothetical protein VITISV_042886 [Viti 0.958 0.938 0.520 1e-106
296083607359 unnamed protein product [Vitis vinifera] 0.958 0.974 0.507 1e-105
224111004366 predicted protein [Populus trichocarpa] 0.964 0.961 0.541 1e-104
147818396367 hypothetical protein VITISV_000986 [Viti 0.967 0.961 0.510 1e-103
255576826 652 Desacetoxyvindoline 4-hydroxylase, putat 0.956 0.535 0.538 1e-103
>gi|147787952|emb|CAN67227.1| hypothetical protein VITISV_000872 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/359 (52%), Positives = 262/359 (72%), Gaps = 9/359 (2%)

Query: 8   DRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQH-TKHKFDDKPIFRDPKINIPIIDF 66
           DR SELK+FD++K GVKGL+D+G+T IPR+FI DQH T   +  +     P+ ++PIIDF
Sbjct: 18  DRKSELKSFDDSKLGVKGLLDAGLTKIPRMFINDQHKTDMTWGSRE--SSPE-SVPIIDF 74

Query: 67  EGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY 126
           +G+ KDA+LR+Q V ++  ACEKWGFFQ +NHGIP SVL+  IDGIRRF E+D E KK+Y
Sbjct: 75  KGVDKDAALRTQIVKKVGEACEKWGFFQVVNHGIPESVLNDMIDGIRRFHEQDAETKKEY 134

Query: 127 FSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQMWK 186
           +SRD   K+R+ SN +L+ A +  W+D+LS  +  +   PE+LP  CRDI++ Y+ Q+ K
Sbjct: 135 YSRDSQNKVRFSSNFDLYQARMANWRDSLSCVMAPNPPLPEQLPAVCRDIVMEYSGQVMK 194

Query: 187 TGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVL 246
            G  L ELLSEALGL+PN+LKD+ C E + +  +YYP CP+PELT+G ++H+DP F T+L
Sbjct: 195 LGLTLFELLSEALGLNPNHLKDMECAEGLFLLGHYYPACPEPELTLGTSSHTDPDFFTIL 254

Query: 247 IQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISI 306
           +QD++GGLQV  EDQW D+ P+PGALV+N+G ++QL++ND+FKS +HRVL+K  G RIS+
Sbjct: 255 LQDQMGGLQVLHEDQWVDVPPIPGALVINMGDLLQLVSNDRFKSIFHRVLAKNVGPRISV 314

Query: 307 GSFFMNNSC---SRRYGPIKDLLSDENPPLYPEITLKDI--YNNQSSTEGLSALEKLKL 360
            SFF  +     SR YGP+K+LLS+ENPP+Y E TL +   Y      +G S+L   KL
Sbjct: 315 ASFFRKSHAENNSRLYGPVKELLSEENPPIYRETTLDEFLTYYFSKGLDGNSSLPHFKL 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477763|ref|XP_002284676.2| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845654|emb|CAN80594.1| hypothetical protein VITISV_017626 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433035|ref|XP_002284663.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576828|ref|XP_002529300.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223531224|gb|EEF33069.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147822811|emb|CAN66006.1| hypothetical protein VITISV_042886 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083607|emb|CBI23596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111004|ref|XP_002315712.1| predicted protein [Populus trichocarpa] gi|222864752|gb|EEF01883.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147818396|emb|CAN62402.1| hypothetical protein VITISV_000986 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576826|ref|XP_002529299.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223531223|gb|EEF33068.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.969 0.969 0.495 1.6e-88
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.958 0.956 0.486 1.1e-87
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.947 0.950 0.494 4.7e-87
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.978 0.967 0.476 7.7e-87
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.969 0.983 0.480 4.4e-84
TAIR|locus:2009210369 AT1G06640 [Arabidopsis thalian 0.967 0.956 0.479 1.2e-83
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.901 0.918 0.474 3.6e-82
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.936 0.944 0.472 3.6e-82
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.961 0.881 0.462 2.5e-81
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.956 0.956 0.465 3.2e-81
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 179/361 (49%), Positives = 237/361 (65%)

Query:     4 IPSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKINIPI 63
             + + DR + LKAFDETK GVKGL+D+GIT IP IF     T      KP       +IP 
Sbjct:     8 VAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTS--PKPP-SSSDFSIPT 64

Query:    64 IDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVK 123
             ID +G   D+  R   V++I  A EKWGFFQ INHGIP  VL++ IDGIR F E+D EVK
Sbjct:    65 IDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVK 124

Query:   124 KKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQ 183
             K ++SRD + K+ Y SN +LFS+P   W+DTL      D   PE+LP  C ++MI Y+ +
Sbjct:   125 KGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKE 184

Query:   184 MWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFV 243
             + K G++L ELLSEALGL+ N+LKD+ C   + +  +YYP CPQP+LT+G+T HSD  F+
Sbjct:   185 VMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFL 244

Query:   244 TVLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSR 303
             T+L+QD IGGLQV  +  W D+ PVPGALVVN+G ++QLITNDKF S  HRVL+   G R
Sbjct:   245 TILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPR 304

Query:   304 ISIGSFFMNNSCS--RRYGPIKDLLSDENPPLYPEITLKDI--YNNQSSTEGLSALEKLK 359
             IS+  FF +   +  R YGPIK++LS+ENPP Y + T+ +   +      +G S L  LK
Sbjct:   305 ISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLK 364

Query:   360 L 360
             +
Sbjct:   365 I 365
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84MB3ACCH1_ARATHNo assigned EC number0.49170.97800.9780yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-72
PLN02947374 PLN02947, PLN02947, oxidoreductase 7e-66
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-62
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-56
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-56
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-54
PLN02904357 PLN02904, PLN02904, oxidoreductase 4e-54
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-52
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-48
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-46
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 8e-45
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-44
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-43
PLN02704335 PLN02704, PLN02704, flavonol synthase 7e-43
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-42
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-40
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-35
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-34
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-34
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-33
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-33
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 9e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-29
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 8e-25
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-23
PLN02485329 PLN02485, PLN02485, oxidoreductase 5e-16
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-14
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 7e-07
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information 
 Score =  229 bits (585), Expect = 2e-72
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 24/355 (6%)

Query: 23  VKGLVDSGITTIPRIFIQDQHTK-HKFDDKPIFRDPKINIPIIDFEGIH-KDASLRSQAV 80
           V+ L +SG+ TIP  +++    + +  +        +INIP+ID   +   DA LR   +
Sbjct: 15  VQSLSESGLPTIPDRYVKPPSQRPNSSNTTSA--PAEINIPVIDLSSLFSDDARLRDATL 72

Query: 81  DQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFS--RDYSKKIRYC 138
             I  AC +WGFFQ +NHG+   ++D+A +  R FF   +EVK++Y +    Y     Y 
Sbjct: 73  RAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEG---YG 129

Query: 139 SNINLFSAPILYWKDTLSFDLG----RDFSSPEELPEACRDIMITYNNQMWKTGEILCEL 194
           S + +    IL W D           +D +    LP +CR+++  Y  ++ K    L ++
Sbjct: 130 SRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKV 189

Query: 195 LSEALGLSPNYLKD-IGCVEEMTIGN----NYYPECPQPELTIGVTTHSDPGFVTVLIQD 249
           LS  LGL  + L++  G  +   +G     NYYP+CPQP+LT+G++ HSDPG +T+L+ D
Sbjct: 190 LSVNLGLEEDRLQNAFGGEDG--VGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPD 247

Query: 250 -RIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGS 308
             + GLQV  +D W  + PVP A +VN+G  +Q+++N  +KS  HRV+      R+S+ +
Sbjct: 248 DNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRVIVNSAKERVSL-A 306

Query: 309 FFMNNSCSRRYGPIKDLLSDENPPLYPEITLKD--IYNNQSSTEGLSALEKLKLA 361
           FF N        P+K+L++ + P LYP +T  +  ++       G S +E LK  
Sbjct: 307 FFYNPKSDLPIEPLKELVTPDRPALYPPMTFDEYRLFIRTKGPRGKSQVESLKSP 361

Length = 362
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02276361 gibberellin 20-oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.88
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.7
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.13
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.29
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 89.84
TIGR02466201 conserved hypothetical protein. This family consis 88.8
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 85.29
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 83.17
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 81.82
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=2e-85  Score=639.89  Aligned_cols=338  Identities=32%  Similarity=0.569  Sum_probs=293.2

Q ss_pred             ccchHHHHhCCCCCCCCccccCCCCCCCCCCC-CCCCCCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHcCeEEEecC
Q 017838           20 KAGVKGLVDSGITTIPRIFIQDQHTKHKFDDK-PIFRDPKINIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINH   98 (365)
Q Consensus        20 ~~~v~~l~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GfF~v~nh   98 (365)
                      ..+||.|+++|+++||++|++|+++++..... .+++....+||||||+.+.+  ..+..++++|++||++||||||+||
T Consensus        25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~--~~~~~~~~~l~~Ac~~~GFF~v~nH  102 (374)
T PLN02947         25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG--SNRPHVLATLAAACREYGFFQVVNH  102 (374)
T ss_pred             ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC--ccHHHHHHHHHHHHHHCcEEEEEcC
Confidence            45899999999999999999999988753110 00012445799999998852  3467889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHhhccccCCCCCccccccccccCCCCCCcccccccccCCCCCCCCCC---chhhhh
Q 017838           99 GIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEEL---PEACRD  175 (365)
Q Consensus        99 Gi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~gy~~~~~~~~~~~~dw~e~~~~~~~p~~~~~~~~---P~~fr~  175 (365)
                      ||+.++++++++.+++||+||.|+|+++...+.....||+..+....++..+|+|.+.+...|....++.|   |+.||+
T Consensus       103 GIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~  182 (374)
T PLN02947        103 GVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRK  182 (374)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHHH
Confidence            99999999999999999999999999976544334567776554444567899999887666532223344   457999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhhhhccCCCceeeeeeecCCCCCCcCCCCcccccCCCCeeEEeeCCCC
Q 017838          176 IMITYNNQMWKTGEILCELLSEALGLS---PNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLIQDRIG  252 (365)
Q Consensus       176 ~~~~y~~~~~~la~~ll~~la~~Lgl~---~~~~~~~~~~~~~~~r~~yYP~~~~~~~~~g~~~HtD~~~lTlL~qd~~~  252 (365)
                      ++++|+++|.+|+.+||++||++|||+   .++|.+.+....+.+|+|||||||+|+.++|+++|||+|+||||+||+++
T Consensus       183 ~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~  262 (374)
T PLN02947        183 VAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVE  262 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCC
Confidence            999999999999999999999999996   45666655556678999999999999999999999999999999999999


Q ss_pred             CeEEeeCCeEEEeccCCCeEEEEeCcccccccCCeeccccccccCCCCCceEEEEEecccCCCCcEEecCCcccCCCCCC
Q 017838          253 GLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLLSDENPP  332 (365)
Q Consensus       253 GLqV~~~g~W~~V~p~pgalvVniGD~Le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~i~P~~elv~~~~p~  332 (365)
                      ||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++++.++||||+||++|+ .|++|+|+++|+++++|+
T Consensus       263 GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~-~d~~i~Pl~~lv~~~~p~  341 (374)
T PLN02947        263 GLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLP-FERVVGPAPELVDEQNPR  341 (374)
T ss_pred             CeeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCC-CCCEEeCChHhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999888999999999999 899999999999999999


Q ss_pred             CCCCcCHHHHHH--HHhCCCCccccccccc
Q 017838          333 LYPEITLKDIYN--NQSSTEGLSALEKLKL  360 (365)
Q Consensus       333 ~y~~~~~~ey~~--~~~~~~~~~~l~~~~~  360 (365)
                      +|++++++||++  +++...+++.++.+|+
T Consensus       342 ~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  371 (374)
T PLN02947        342 RYMDTDFATFLAYLASAEGKHKNFLESRKL  371 (374)
T ss_pred             cCCCCCHHHHHHHHHHhccCchhhhhhhhc
Confidence            999999999999  6778889999998886

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-38
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-38
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-37
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-34
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-18
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 7e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 8e-06
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 17/331 (5%)
Query: 23  VKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKI----NIPIIDFEGIHKD-ASLRS 77
           V+ L  SGI +IP+ +I+ +      +D  +F + K      +P ID + I  D   +R 
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESIND--VFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 78  QAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR- 136
             +++++ A   WG    INHGIP  ++++       FF   VE K+KY +   + KI+ 
Sbjct: 65  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 137 YCSNINLFSAPILYWKDTLSFDLG-----RDFSSPEELPEACRDIMITYNNQMWKTGEIL 191
           Y S +   ++  L W+D   F L      RD S   + P    +    Y   +      +
Sbjct: 125 YGSKLANNASGQLEWEDYF-FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 192 CELLSEALGLSPNYL-KDIGCVEEMTIGN--NYYPECPQPELTIGVTTHSDPGFVTVLIQ 248
            + LS  LGL P+ L K++G +EE+ +    NYYP+CPQPEL +GV  H+D   +T ++ 
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 249 DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGS 308
           + + GLQ+F E +W     VP ++V+++G  +++++N K+KS  HR L  KE  RIS   
Sbjct: 244 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303
Query: 309 FFMNNSCSRRYGPIKDLLSDENPPLYPEITL 339
           F           P+ +++S E+P  +P  T 
Sbjct: 304 FCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 334
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-137
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-116
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-77
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-73
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-68
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 6e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  394 bits (1014), Expect = e-137
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 11/348 (3%)

Query: 23  VKGLVDSGITTIPRIFIQDQHTKHKFDD--KPIFRDPKINIPIIDFEGIHK-DASLRSQA 79
           V+ L  SGI +IP+ +I+ +      +D      ++    +P ID + I   D  +R   
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 80  VDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR-YC 138
           +++++ A   WG    INHGIP  ++++       FF   VE K+KY +   + KI+ Y 
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 139 SNINLFSAPILYWKDTLSF----DLGRDFSSPEELPEACRDIMITYNNQMWKTGEILCEL 194
           S +   ++  L W+D        +  RD S   + P    +    Y   +      + + 
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186

Query: 195 LSEALGLSPNYLKD-IGCVEEMTIGN--NYYPECPQPELTIGVTTHSDPGFVTVLIQDRI 251
           LS  LGL P+ L+  +G +EE+ +    NYYP+CPQPEL +GV  H+D   +T ++ + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246

Query: 252 GGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFM 311
            GLQ+F E +W     VP ++V+++G  +++++N K+KS  HR L  KE  RIS   F  
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306

Query: 312 NNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLK 359
                    P+ +++S E+P  +P  T      ++   +    L   K
Sbjct: 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.73
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.34
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 89.03
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 87.99
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.35
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 85.9
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 83.84
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.75
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 82.43
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=9.1e-84  Score=626.49  Aligned_cols=331  Identities=28%  Similarity=0.490  Sum_probs=289.3

Q ss_pred             cccchHHHHhCCCCCCCCccccCCCCCCCCCCCCCCCCC----CCCceeeecCCCC-CCchhHHHHHHHHHHHHHHcCeE
Q 017838           19 TKAGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDP----KINIPIIDFEGIH-KDASLRSQAVDQIRSACEKWGFF   93 (365)
Q Consensus        19 ~~~~v~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GfF   93 (365)
                      .+.+||+|+++|+++||++|++|+++++.....  +...    ..+||||||+.+. ++++.|.+++++|.+||++||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~--~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF   80 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDV--FLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVM   80 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCH--HHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhccccccc--ccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEE
Confidence            357899999999999999999998877653110  0001    2469999999986 45667888999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccccCC-CCCccccccccccCCCCCCcccccccccCCC-----CCCCC
Q 017838           94 QAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDY-SKKIRYCSNINLFSAPILYWKDTLSFDLGRD-----FSSPE  167 (365)
Q Consensus        94 ~v~nhGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~~gy~~~~~~~~~~~~dw~e~~~~~~~p~-----~~~~~  167 (365)
                      ||+||||+.++++++++.+++||+||.|+|+++..... ....||+........+..||+|.|.+...|.     ..||+
T Consensus        81 ~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~  160 (356)
T 1gp6_A           81 HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  160 (356)
T ss_dssp             EEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCC
Confidence            99999999999999999999999999999999875543 3567898766555567789999998876553     12343


Q ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhccC---CCceeeeeeecCCCCCCcCCCCcccccCCCCee
Q 017838          168 ELPEACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGC---VEEMTIGNNYYPECPQPELTIGVTTHSDPGFVT  244 (365)
Q Consensus       168 ~~P~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~~r~~yYP~~~~~~~~~g~~~HtD~~~lT  244 (365)
                      . |+.||+++++|+++|.+|+.+||++||++|||++++|.+.+.   ...+.+|+||||||++++.++|+++|||+|+||
T Consensus       161 ~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lT  239 (356)
T 1gp6_A          161 T-PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  239 (356)
T ss_dssp             S-STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             c-chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEE
Confidence            2 347999999999999999999999999999999999998876   356789999999999999999999999999999


Q ss_pred             EEeeCCCCCeEEeeCCeEEEeccCCCeEEEEeCcccccccCCeeccccccccCCCCCceEEEEEecccCCCCc-EEecCC
Q 017838          245 VLIQDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSR-RYGPIK  323 (365)
Q Consensus       245 lL~qd~~~GLqV~~~g~W~~V~p~pgalvVniGD~Le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~-~i~P~~  323 (365)
                      ||+||+++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++++..+|+|++||++|+ .|+ +|+|++
T Consensus       240 lL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~-~d~~~i~pl~  318 (356)
T 1gp6_A          240 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPP-KDKIVLKPLP  318 (356)
T ss_dssp             EEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECC-TTTCEECCCG
T ss_pred             EEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCC-CCCcEEeCCh
Confidence            999999999999999999999999999999999999999999999999999999889999999999999 899 999999


Q ss_pred             cccCCCCCCCCCCcCHHHHHH--HHhCCCCcc
Q 017838          324 DLLSDENPPLYPEITLKDIYN--NQSSTEGLS  353 (365)
Q Consensus       324 elv~~~~p~~y~~~~~~ey~~--~~~~~~~~~  353 (365)
                      +++++++|++|+++|++||++  +.++++|+.
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            999999999999999999998  555555543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-73
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-58
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-48
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-38
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  229 bits (584), Expect = 3e-73
 Identities = 95/332 (28%), Positives = 161/332 (48%), Gaps = 11/332 (3%)

Query: 21  AGVKGLVDSGITTIPRIFIQDQHTKHKFDDKPI--FRDPKINIPIIDFEGIHK-DASLRS 77
             V+ L  SGI +IP+ +I+ +      +D  +   ++    +P ID + I   D  +R 
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 78  QAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR- 136
             +++++ A   WG    INHGIP  ++++       FF   VE K+KY +   + KI+ 
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 137 YCSNINLFSAPILYWKDTL----SFDLGRDFSSPEELPEACRDIMITYNNQMWKTGEILC 192
           Y S +   ++  L W+D        +  RD S   + P    +    Y   +      + 
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183

Query: 193 ELLSEALGLSPNYLKDIGCVEEMTIGN---NYYPECPQPELTIGVTTHSDPGFVTVLIQD 249
           + LS  LGL P+ L+      E  +     NYYP+CPQPEL +GV  H+D   +T ++ +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243

Query: 250 RIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSF 309
            + GLQ+F E +W     VP ++V+++G  +++++N K+KS  HR L  KE  RIS   F
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 310 FMNNSCSRRYGPIKDLLSDENPPLYPEITLKD 341
                      P+ +++S E+P  +P  T   
Sbjct: 304 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 335
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.06
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 82.03
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7e-79  Score=588.87  Aligned_cols=323  Identities=28%  Similarity=0.510  Sum_probs=276.5

Q ss_pred             ccchHHHHhCCCCCCCCccccCCCCCCCCCCC--CCCCCCCCCceeeecCCCC-CCchhHHHHHHHHHHHHHHcCeEEEe
Q 017838           20 KAGVKGLVDSGITTIPRIFIQDQHTKHKFDDK--PIFRDPKINIPIIDFEGIH-KDASLRSQAVDQIRSACEKWGFFQAI   96 (365)
Q Consensus        20 ~~~v~~l~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GfF~v~   96 (365)
                      +.+||+|+++|+++||++||+|+++++..+..  ........+||||||+.+. +++..|++++++|.+||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            45899999999999999999999998876321  0012456689999999987 67778899999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhccccCCCCCc-cccccccccCCCCCCcccccccccCCC-----CCCCCCCc
Q 017838           97 NHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKI-RYCSNINLFSAPILYWKDTLSFDLGRD-----FSSPEELP  170 (365)
Q Consensus        97 nhGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~-gy~~~~~~~~~~~~dw~e~~~~~~~p~-----~~~~~~~P  170 (365)
                      ||||+.++++++++++++||+||.|+|+++......... +|+...........+|.+.+.....+.     ..|++. +
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~-~  161 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-P  161 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS-S
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccc-c
Confidence            999999999999999999999999999998654333232 444444444455667776654333221     123322 3


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhccC---CCceeeeeeecCCCCCCcCCCCcccccCCCCeeEEe
Q 017838          171 EACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGC---VEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTVLI  247 (365)
Q Consensus       171 ~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~~r~~yYP~~~~~~~~~g~~~HtD~~~lTlL~  247 (365)
                      +.|++.+++|+++|.+|+.+|+++++++||+++++|.+.+.   .....+|++|||+++.+...+|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            46999999999999999999999999999999999987643   234578999999999999999999999999999999


Q ss_pred             eCCCCCeEEeeCCeEEEeccCCCeEEEEeCcccccccCCeeccccccccCCCCCceEEEEEecccCCCCcE-EecCCccc
Q 017838          248 QDRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRR-YGPIKDLL  326 (365)
Q Consensus       248 qd~~~GLqV~~~g~W~~V~p~pgalvVniGD~Le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~-i~P~~elv  326 (365)
                      |+.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.|++++||||+||++|+ .|++ ++|+++|+
T Consensus       242 q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~-~d~~i~~pl~~~v  320 (349)
T d1gp6a_         242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPP-KDKIVLKPLPEMV  320 (349)
T ss_dssp             ECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECC-TTTCEECCCGGGC
T ss_pred             ccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCC-CcceeecCCHHHc
Confidence            999999999999999999999999999999999999999999999999999989999999999999 7865 59999999


Q ss_pred             CCCCCCCCCCcCHHHHHH
Q 017838          327 SDENPPLYPEITLKDIYN  344 (365)
Q Consensus       327 ~~~~p~~y~~~~~~ey~~  344 (365)
                      ++++|++|+++|++||++
T Consensus       321 ~~~~p~~y~~~t~~e~~~  338 (349)
T d1gp6a_         321 SVESPAKFPPRTFAQHIE  338 (349)
T ss_dssp             CSSSCCSSCCEEHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHH
Confidence            999999999999999998
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure