Citrus Sinensis ID: 017922

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGVSKKHNIKWINEEEKIADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQKSRRR
cccccEEEEEccEEECccccEEEEEEEEEEccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHccccccEECcccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHcccccccccHHHccccccccEEEEcccccccccccEEEEEcccHHHHHHHHHHccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
**SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDE**************************************NQCKCEDHLKVIERLK***********M*DKNISD****************
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MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGVSKKHNIKWINEEEKIADTNQCKCEDHLKVIERLKRELREKDFQxxxxxxxxxxxxxxxxxxxxxKSRRR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Small RNA degrading nuclease 1 3'-5' exonuclease degrading single-stranded small RNAs.probableA3KPE8

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WLJ, chain A
Confidence level:very confident
Coverage over the Query: 5-161
View the alignment between query and template
View the model in PyMOL
Template: 3D45, chain A
Confidence level:probable
Coverage over the Query: 81-239
View the alignment between query and template
View the model in PyMOL
Template: 3NMR, chain A
Confidence level:probable
Coverage over the Query: 183-273
View the alignment between query and template
View the model in PyMOL