Citrus Sinensis ID: 017938

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
ccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEcEEEEEcccccEEEEEccccccccEEEEEEEEEEcHHHHHHHHHHHHcccccccccccHHHHHcccccccccccEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEcccccccccccccccccccccccccEEccccccccccccccc
cccccccHHHHHcccccccccHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEHHcccccccEEEEcccccccccccEEEccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccEEEccccccccccccccccHHHcccccEEEEEcccccEEEEEcccEccccEEEEcccEEEEHHHHHHHHccccHHcccccccccHHccccccccccccccEEEEccccccHHHHEccccccccEEEEEEEcccccccEEEEEEcccEccccEcEEccccccccccccEcEccccccccccccccc
mafsnaptelinchkrtiEVDEEQKQNQFLQWARlilpwltpgelanvSLTCRTLsqisksitlsrsldasrsvenfpipfhnaadktpyayfiytpsqiipppcpaqfpprqfwastnaaadaesnsslsrlgfdSVSLvcesdesesgcdceecfevglgdgvfgcpcfsgledvgivsecgpscgcgsecgnrltqrGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDglassprnsSALLVIREhlpsgkaclRMNIDATRIGNIARFInhscdggnlsttlvrssgsilprlcffaskdikEGEELAFSYgeirarprglpcycgstscfgilpsent
mafsnaptelinchKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYdglassprnssALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGstscfgilpsent
MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIpppcpaqfppRQFWASTNAAADAESNSSLSRLGFDSVSLVcesdesesgcdceecfeVGLGDGVFGCPCFSGLEDVGIVsecgpscgcgsecgNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
**********INCHKRTIEVD***KQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDA*RSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWA******************FDSVSLVC******SGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYD**********ALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGIL*****
*****************************LQWARLILPWLTPGELAN***************************ENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSE**
********ELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTN***********SRLGFDSVSL************CEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
************C*KRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCF*I******
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MAFSNAPTELINCHKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q9SRV2338 Histone-lysine N-methyltr yes no 0.842 0.905 0.569 2e-97
Q80UJ9309 Histone-lysine N-methyltr yes no 0.752 0.883 0.309 6e-33
Q53H47 671 Histone-lysine N-methyltr yes no 0.471 0.254 0.366 1e-30
Q5I0M0315 Histone-lysine N-methyltr yes no 0.482 0.555 0.378 2e-30
Q0VD24306 Histone-lysine N-methyltr yes no 0.471 0.558 0.366 1e-29
O648271382 Histone-lysine N-methyltr no no 0.501 0.131 0.403 6e-26
Q96KQ71210 Histone-lysine N-methyltr no no 0.672 0.201 0.310 1e-25
Q9Z1481263 Histone-lysine N-methyltr no no 0.672 0.193 0.310 2e-25
Q28CQ7406 Histone-lysine N-methyltr no no 0.537 0.480 0.322 3e-24
Q6NRE8421 Histone-lysine N-methyltr N/A no 0.487 0.420 0.338 7e-24
>sp|Q9SRV2|SUVR3_ARATH Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana GN=SUVR3 PE=2 SV=3 Back     alignment and function desciption
 Score =  355 bits (912), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/344 (56%), Positives = 234/344 (68%), Gaps = 38/344 (11%)

Query: 27  NQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86
           ++FL+ A LILPWL P ELA V+ TC+TLS ISKS+T+ RSLDA+RS+EN  IPFHN+ D
Sbjct: 26  DRFLRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSID 85

Query: 87  KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESN---SSLSRLGFDSVSLVCE 143
              YAYFIYTP QI   P  +  PPRQ+W +      +ES     S+S  G   VSLV  
Sbjct: 86  SQRYAYFIYTPFQI---PASSPPPPRQWWGAAANECGSESRPCFDSVSESGRFGVSLV-- 140

Query: 144 SDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGIS 203
               ESGC+CE C E     G   C  F+G+E+  I +ECG  CGCGS+C NR+TQ+G+S
Sbjct: 141 ---DESGCECERCEE-----GYCKCLAFAGMEE--IANECGSGCGCGSDCSNRVTQKGVS 190

Query: 204 VRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSAL 263
           V LKIVR   KGW LYADQ IKQ                ARRRQ IYD L S+   +SAL
Sbjct: 191 VSLKIVRDEKKGWCLYADQLIKQ----------------ARRRQNIYDKLRSTQSFASAL 234

Query: 264 LVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASK 323
           LV+REHLPSG+ACLR+NIDATRIGN+ARFINHSCDGGNLST L+RSSG++LPRLCFFA+K
Sbjct: 235 LVVREHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLCFFAAK 294

Query: 324 DIKEGEELAFSYGEIRA----RPRGLPCYCGSTSCFGILPSENT 363
           DI   EEL+FSYG++      R   L C CGS+ C G LP ENT
Sbjct: 295 DIIAEEELSFSYGDVSVAGENRDDKLNCSCGSSCCLGTLPCENT 338
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q80UJ9|SETMR_MOUSE Histone-lysine N-methyltransferase SETMAR OS=Mus musculus GN=Setmar PE=2 SV=2 Back     alignment and function description
>sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR OS=Homo sapiens GN=SETMAR PE=1 SV=1 Back     alignment and function description
>sp|Q5I0M0|SETMR_RAT Histone-lysine N-methyltransferase SETMAR OS=Rattus norvegicus GN=Setmar PE=2 SV=1 Back     alignment and function description
>sp|Q0VD24|SETMR_BOVIN Histone-lysine N-methyltransferase SETMAR OS=Bos taurus GN=SETMAR PE=2 SV=1 Back     alignment and function description
>sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3 Back     alignment and function description
>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z148|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2 Back     alignment and function description
>sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis GN=suv39h2 PE=2 SV=2 Back     alignment and function description
>sp|Q6NRE8|SUV91_XENLA Histone-lysine N-methyltransferase SUV39H1 OS=Xenopus laevis GN=suv39h1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
224125956340 SET domain protein [Populus trichocarpa] 0.895 0.955 0.628 1e-113
255569458327 set domain protein, putative [Ricinus co 0.881 0.978 0.614 1e-112
449437767342 PREDICTED: histone-lysine N-methyltransf 0.909 0.964 0.594 1e-109
42572235354 histone-lysine N-methyltransferase SUVR3 0.887 0.909 0.613 1e-108
225439235319 PREDICTED: histone-lysine N-methyltransf 0.878 1.0 0.608 1e-104
356574501343 PREDICTED: histone-lysine N-methyltransf 0.892 0.944 0.584 1e-102
297828844349 SET domain-containing protein [Arabidops 0.807 0.839 0.627 5e-99
42563469338 histone-lysine N-methyltransferase SUVR3 0.842 0.905 0.569 1e-95
147775079362 hypothetical protein VITISV_012529 [Viti 0.878 0.881 0.530 6e-95
357136667333 PREDICTED: histone-lysine N-methyltransf 0.884 0.963 0.511 1e-86
>gi|224125956|ref|XP_002319719.1| SET domain protein [Populus trichocarpa] gi|222858095|gb|EEE95642.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/350 (62%), Positives = 259/350 (74%), Gaps = 25/350 (7%)

Query: 29  FLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKT 88
            +Q A LILPWLTP ELAN+S TC+ LSQISKSITL R+LDASR +EN  IPF N  ++ 
Sbjct: 1   LIQCADLILPWLTPLELANISSTCKALSQISKSITLQRTLDASRFLENHLIPFLNPNNQH 60

Query: 89  PYAYFIYTPSQIIPPPCPAQFPPRQFWAST---------NAAADAESNSSLSRL-GFDSV 138
           PYAYF+Y PSQ++P    +Q P RQ W S          ++ +  + N S   L G DS 
Sbjct: 61  PYAYFLYAPSQLLP----SQSPLRQPWGSQIDRDSLGRHHSGSACKLNESWEVLRGCDSE 116

Query: 139 -----SLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSEC 193
                 ++ ES +   GCDCE C E G G        F GLE++GI++ECGP CGCG EC
Sbjct: 117 LATPRRVMGESGKGVCGCDCEGCEEGGTGWE------FWGLEEMGIMTECGPGCGCGLEC 170

Query: 194 GNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGL 253
            NRLTQRG+ V+LKIVR   K WGL+A Q I QGQFICEYAGELLTT+EARRRQQIYD L
Sbjct: 171 SNRLTQRGVLVKLKIVRDGKKAWGLFAGQMICQGQFICEYAGELLTTEEARRRQQIYDEL 230

Query: 254 ASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI 313
           ASS + SSALLV+REHLPSGKACLR+NIDATR GN+ARFINHSCDGGNL+T LVR +GS+
Sbjct: 231 ASSGQFSSALLVVREHLPSGKACLRINIDATRTGNVARFINHSCDGGNLTTVLVRHTGSL 290

Query: 314 LPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSENT 363
           LPRLCFFAS++IKEGEEL FSYGEIR R +GL C+CGS+ CFG LPSE+T
Sbjct: 291 LPRLCFFASRNIKEGEELTFSYGEIRVRSKGLQCFCGSSCCFGTLPSEHT 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569458|ref|XP_002525696.1| set domain protein, putative [Ricinus communis] gi|223534996|gb|EEF36679.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449437767|ref|XP_004136662.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Cucumis sativus] gi|449494757|ref|XP_004159638.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572235|ref|NP_974212.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] gi|6006866|gb|AAF00642.1|AC009540_19 hypothetical protein [Arabidopsis thaliana] gi|225898613|dbj|BAH30437.1| hypothetical protein [Arabidopsis thaliana] gi|332640460|gb|AEE73981.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225439235|ref|XP_002277066.1| PREDICTED: histone-lysine N-methyltransferase SUVR3 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574501|ref|XP_003555385.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] Back     alignment and taxonomy information
>gi|297828844|ref|XP_002882304.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328144|gb|EFH58563.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42563469|ref|NP_187025.2| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] gi|166899086|sp|Q9SRV2.3|SUVR3_ARATH RecName: Full=Histone-lysine N-methyltransferase SUVR3; AltName: Full=Protein SET DOMAIN GROUP 20; AltName: Full=Suppressor of variegation 3-9-related protein 3; Short=Su(var)3-9-related protein 3 gi|31711698|gb|AAP68205.1| At3g03750 [Arabidopsis thaliana] gi|110742901|dbj|BAE99347.1| hypothetical protein [Arabidopsis thaliana] gi|332640461|gb|AEE73982.1| histone-lysine N-methyltransferase SUVR3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147775079|emb|CAN72627.1| hypothetical protein VITISV_012529 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357136667|ref|XP_003569925.1| PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2079369354 SDG20 "SET domain protein 20" 0.895 0.918 0.568 6.7e-88
UNIPROTKB|F1P132181 F1P132 "Uncharacterized protei 0.432 0.867 0.425 8.8e-31
MGI|MGI:1921979309 Setmar "SET domain without mar 0.443 0.521 0.401 2e-30
UNIPROTKB|F1SFL5318 LOC100514009 "Uncharacterized 0.443 0.506 0.379 1.4e-29
UNIPROTKB|Q0VD24306 SETMAR "Histone-lysine N-methy 0.443 0.526 0.379 1.4e-29
UNIPROTKB|J9PBK3342 SETMAR "Uncharacterized protei 0.443 0.470 0.373 1.2e-28
UNIPROTKB|E2R9M4306 SETMAR "Uncharacterized protei 0.443 0.526 0.373 2.5e-28
ZFIN|ZDB-GENE-080204-61293 setmar "SET domain without mar 0.429 0.532 0.353 1.9e-26
UNIPROTKB|C9JHK2365 SETMAR "SET domain and mariner 0.443 0.441 0.379 3.2e-26
RGD|1565882315 Setmar "SET domain without mar 0.440 0.507 0.387 3.2e-26
TAIR|locus:2079369 SDG20 "SET domain protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 194/341 (56%), Positives = 227/341 (66%)

Query:    27 NQFLQWARLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86
             ++FL+ A LILPWL P ELA V+ TC+TLS ISKS+T+ RSLDA+RS+EN  IPFHN+ D
Sbjct:    26 DRFLRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSID 85

Query:    87 KTPYAYFIYTPSQIIXXXXXXXXXXRQFWASTNAAADAESNSSLSRLGFDSVSLVXXXXX 146
                YAYFIYTP QI           RQ+W    AAA+ E  S  SR  FDSVS       
Sbjct:    86 SQRYAYFIYTPFQI---PASSPPPPRQWWG---AAAN-ECGSE-SRPCFDSVS--ESGRF 135

Query:   147 XXXXXXXXXXXXVGLGDGVFGCPCFSGLEDVGIVXXXXXXXXXXXXXXNRLTQRGISVRL 206
                             +G   C  F+G+E+  I               NR+TQ+G+SV L
Sbjct:   136 GVSLVDESGCECERCEEGYCKCLAFAGMEE--IANECGSGCGCGSDCSNRVTQKGVSVSL 193

Query:   207 KIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVI 266
             KIVR   KGW LYADQ IKQGQFICEYAGELLTT EARRRQ IYD L S+   +SALLV+
Sbjct:   194 KIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLVV 253

Query:   267 REHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIK 326
             REHLPSG+ACLR+NIDATRIGN+ARFINHSCDGGNLST L+RSSG++LPRLCFFA+KDI 
Sbjct:   254 REHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLCFFAAKDII 313

Query:   327 EGEELAFSYGEIRA----RPRGLPCYCGSTSCFGILPSENT 363
               EEL+FSYG++      R   L C CGS+ C G LP ENT
Sbjct:   314 AEEELSFSYGDVSVAGENRDDKLNCSCGSSCCLGTLPCENT 354
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
UNIPROTKB|F1P132 F1P132 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1921979 Setmar "SET domain without mariner transposase fusion" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFL5 LOC100514009 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VD24 SETMAR "Histone-lysine N-methyltransferase SETMAR" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBK3 SETMAR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9M4 SETMAR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-61 setmar "SET domain without mariner transposase fusion" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9JHK2 SETMAR "SET domain and mariner transposase fusion" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1565882 Setmar "SET domain without mariner transposase fusion" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV2SUVR3_ARATH2, ., 1, ., 1, ., 4, 30.56970.84290.9053yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.946
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG935
SET domain protein (340 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 8e-32
pfam00856113 pfam00856, SET, SET domain 3e-30
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 6e-12
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 8e-05
smart0057050 smart00570, AWS, associated with SET domains 0.003
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  115 bits (291), Expect = 8e-32
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 15/133 (11%)

Query: 204 VRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSAL 263
            +L++ +S  KGWG+ A + I +G+FI EY GE++T++EA  R + YD   +    +  L
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYD---TDGAKAFYL 57

Query: 264 LVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASK 323
             I            + IDA R GN+ARFINHSC+  N     V  +G    R+  FA +
Sbjct: 58  FDIDSD---------LCIDARRKGNLARFINHSCE-PNCELLFVEVNGDD--RIVIFALR 105

Query: 324 DIKEGEELAFSYG 336
           DIK GEEL   YG
Sbjct: 106 DIKPGEELTIDYG 118

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|197795 smart00570, AWS, associated with SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.96
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.96
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.91
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.85
KOG1085392 consensus Predicted methyltransferase (contains a 99.84
COG2940480 Proteins containing SET domain [General function p 99.69
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.67
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.61
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.49
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.01
KOG1081463 consensus Transcription factor NSD1 and related SE 98.96
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.88
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.44
cd0139560 HMT_MBD Methyl-CpG binding domains (MBD) present i 97.26
smart0050826 PostSET Cysteine-rich motif following a subset of 96.89
smart0057051 AWS associated with SET domains. subdomain of PRES 96.76
KOG2084 482 consensus Predicted histone tail methylase contain 90.88
smart0039177 MBD Methyl-CpG binding domain. Methyl-CpG binding 90.88
cd0139773 HAT_MBD Methyl-CpG binding domains (MBD) present i 88.66
cd0012262 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and 88.45
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 82.51
KOG1337 472 consensus N-methyltransferase [General function pr 82.13
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-49  Score=404.68  Aligned_cols=189  Identities=22%  Similarity=0.324  Sum_probs=156.4

Q ss_pred             ccceeeeeeccchhhHHHHHHHHhcCCCchhhhhHHhh-------hhhhhhhcccccccccccccCCcCCCCeeeEeCCC
Q 017938           14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLT-------CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD   86 (363)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~~N~vd   86 (363)
                      |++.|||.|+||||++|+.+++|..||.++++.++...       ....++..+.....++.||+.|.|.+||+++|++|
T Consensus       615 ~~~~fhv~yktpcg~~lr~~~el~ryL~et~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neid  694 (1262)
T KOG1141|consen  615 YIRDFHVEYKTPCGMPLRMRIELYRYLVETRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEID  694 (1262)
T ss_pred             hhhcceeeccCCCccchHHHHHHHHHHHHhcCcEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeeccc
Confidence            78999999999999999999999999999998887655       23334556666788899999999999999999999


Q ss_pred             CCCCCCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccCCCCCCCCccCCCcCCCCCCCcc
Q 017938           87 KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVF  166 (363)
Q Consensus        87 ~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~C~C~~~~~~~~~~~~~  166 (363)
                      ..++|.|.|....+....            ...+  +++++                    ..+|+|..+|.+.     .
T Consensus       695 s~~lpq~ay~K~~ip~~~------------nl~n--~~~~f--------------------l~scdc~~gcid~-----~  735 (1262)
T KOG1141|consen  695 SHRLPQAAYKKHMIPTNN------------NLSN--RRKDF--------------------LQSCDCPTGCIDS-----M  735 (1262)
T ss_pred             CcCCccchhheeeccCCC------------cccc--cChhh--------------------hhcCCCCcchhhh-----h
Confidence            999999999987652211            1011  12222                    2679999999777     7


Q ss_pred             CCCCCCC------------------------C-CccceeeecCCCCCCCC-CCCCccccCCCcccEEEEEeCCCCcceee
Q 017938          167 GCPCFSG------------------------L-EDVGIVSECGPSCGCGS-ECGNRLTQRGISVRLKIVRSVNKGWGLYA  220 (363)
Q Consensus       167 ~c~C~~~------------------------~-~~~~~i~EC~~~C~C~~-~C~Nrv~q~g~~~~leV~~t~~kGwGlrA  220 (363)
                      .|+|.++                        . ..+..+|||+..|+|.+ .|.||++|+|.++||++|++..||||+|.
T Consensus       736 kcachQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rc  815 (1262)
T KOG1141|consen  736 KCACHQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRC  815 (1262)
T ss_pred             hhhHHHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEe
Confidence            8988854                        0 11346899999999875 89999999999999999999999999999


Q ss_pred             cccccCCcEEEEeeeEEeeHH
Q 017938          221 DQFIKQGQFICEYAGELLTTK  241 (363)
Q Consensus       221 ~~~I~~G~fI~eY~Gevi~~~  241 (363)
                      .++|.+|.|||.|.|.++++.
T Consensus       816 lddi~~g~fVciy~g~~l~~~  836 (1262)
T KOG1141|consen  816 LDDITGGNFVCIYPGGALLHQ  836 (1262)
T ss_pred             eeecCCceEEEEecchhhhhh
Confidence            999999999999999987654

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>smart00391 MBD Methyl-CpG binding domain Back     alignment and domain information
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity Back     alignment and domain information
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 4e-28
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 7e-23
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 8e-23
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 3e-19
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 5e-19
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 6e-19
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 8e-19
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 7e-18
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 3e-16
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 6e-16
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 3e-14
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 4e-14
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 5e-13
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 9e-12
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 3e-11
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 5e-11
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 7e-11
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 7e-11
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 2e-10
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 31/187 (16%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLA 254
           NR+ Q+G+    ++ ++  KGWGL   +FI +G+F+CEYAGE+L   E +RR  +     
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHL----- 171
Query: 255 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSIL 314
            +  +S+ ++ IREH+ +G+  +   +D T IGNI RF+NHSC+  NL    VR   S++
Sbjct: 172 QTKSDSNYIIAIREHVYNGQV-METFVDPTYIGNIGRFLNHSCE-PNLLMIPVRID-SMV 228
Query: 315 PRLCFFASKDIKEGEELAFSY------------------GEIRARPRGLPCYCGSTSCFG 356
           P+L  FA+KDI   EEL++ Y                  G++R      PCYCG+ SC  
Sbjct: 229 PKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRK-----PCYCGAKSCTA 283
Query: 357 ILPSENT 363
            LP +++
Sbjct: 284 FLPFDSS 290
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 9e-73
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 4e-72
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 8e-67
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 6e-66
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-64
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 4e-59
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 4e-56
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 4e-55
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 8e-46
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 1e-42
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-27
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 4e-25
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 4e-22
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 3e-20
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 1e-17
3dal_A196 PR domain zinc finger protein 1; methyltransferase 1e-14
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 4e-14
3db5_A151 PR domain zinc finger protein 4; methyltransferase 9e-14
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-11
3ray_A237 PR domain-containing protein 11; structural genomi 7e-07
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 6e-04
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  227 bits (580), Expect = 9e-73
 Identities = 75/325 (23%), Positives = 118/325 (36%), Gaps = 48/325 (14%)

Query: 52  CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD--KTPYAYFIYTPSQIIPPPCPAQF 109
             + + +S            R +E   +   N  D    P   F +     +        
Sbjct: 3   LDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVI--- 59

Query: 110 PPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCP 169
                                 + G +  SL      + S C+C +  +       +   
Sbjct: 60  ----------------PPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEP-THFAYDAQ 102

Query: 170 CFSGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQF 229
                +   ++ EC   C C  EC NR+ QRG ++ L+I ++  KGWG+ + +F   G F
Sbjct: 103 GRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTF 162

Query: 230 ICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNI 289
           I  Y GE++T+ EA +R + YD         + L      L          +DA   G++
Sbjct: 163 ITCYLGEVITSAEAAKRDKNYD-----DDGITYLF----DLDMFDDASEYTVDAQNYGDV 213

Query: 290 ARFINHSCDGGNLSTT--LVRSSGSILPRLCFFASKDIKEGEELAFSYG----------- 336
           +RF NHSC   N++    +       +  L FFA KDI+  EEL F Y            
Sbjct: 214 SRFFNHSCS-PNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQ 272

Query: 337 ---EIRARPRGLPCYCGSTSCFGIL 358
              + R       C CGS +C G L
Sbjct: 273 KSQQNRISKLRRQCKCGSANCRGWL 297
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.95
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.94
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.94
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.94
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.92
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.89
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.84
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.82
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.77
3ray_A237 PR domain-containing protein 11; structural genomi 99.7
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.58
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.77
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.71
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.68
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.82
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 96.49
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.42
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 85.9
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 84.65
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 84.3
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.1e-58  Score=436.89  Aligned_cols=260  Identities=34%  Similarity=0.654  Sum_probs=193.3

Q ss_pred             ccccccCCcCCCCeeeEeCCCCCCCCCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccC-
Q 017938           66 RSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCES-  144 (363)
Q Consensus        66 ~~~DiS~G~E~~pI~~~N~vd~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-  144 (363)
                      +..|||+|+|++|||++|+  +..|+.|+|++++++++.....  +.+                   ..  ...|.|.. 
T Consensus        13 ~~~Dis~G~E~~pi~~~n~--~~~p~~f~Y~~~~~~~~~~~~~--~~~-------------------~~--~~gC~C~~~   67 (290)
T 3bo5_A           13 EQLDVACGQENLPVGAWPP--GAAPAPFQYTPDHVVGPGADID--PTQ-------------------IT--FPGCICVKT   67 (290)
T ss_dssp             CCSCTTTTCSSSCCEEEST--TCCCCCCEECSSCEECTTCSSC--TTS-------------------CC--CCCCCCCSS
T ss_pred             cchhhhCCCCCCceeeECC--CCCCCCcEEeeceecCCCCcCC--ccc-------------------cc--CCCCCCCCC
Confidence            5689999999999999998  4467899999998765443220  000                   00  12344432 


Q ss_pred             CCCCCCCccCCCcCCCCCCCccCCCCCCC----CCccceeeecCCCCCCCCCCCCccccCCCcccEEEEEeCCCCcceee
Q 017938          145 DESESGCDCEECFEVGLGDGVFGCPCFSG----LEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYA  220 (363)
Q Consensus       145 ~~~~~~C~C~~~~~~~~~~~~~~c~C~~~----~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~leV~~t~~kGwGlrA  220 (363)
                      .|....|.|......   .  ....|+..    .....++|||++.|+|+..|.||++|+|++.+|+|++|+.+||||||
T Consensus        68 ~C~~~~C~C~~~~~~---y--~~~~~l~~~~~~~~~~~~~~EC~~~C~C~~~C~Nr~~q~g~~~~l~V~~s~~~G~Gl~A  142 (290)
T 3bo5_A           68 PCLPGTCSCLRHGEN---Y--DDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRT  142 (290)
T ss_dssp             CCCTTTCGGGTTSCS---B--CTTSCBCC-----CCCCCEECCCTTCCSCTTCTTCCGGGCCCSCEEEEECSSSSEEEEE
T ss_pred             CcCCCCCcchhhcCc---c--CccccccccccccccCCceEeCCCCCCCCCCCCCeEcccCCcccEEEEEcCCCcceEeE
Confidence            333455666543200   0  00112210    11235799999999999999999999999999999999999999999


Q ss_pred             cccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEeccccCCcccccccCCCCC
Q 017938          221 DQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGG  300 (363)
Q Consensus       221 ~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFINHSC~PN  300 (363)
                      +++|++|+||+||+|||++.+|+++|...|+.     ....|++.+++++..+. ...++|||+.+||++|||||||+| 
T Consensus       143 ~~~I~~G~~I~EY~Gevi~~~e~~~R~~~~~~-----~~~~Y~~~l~~~~~~~~-~~~~~IDa~~~GN~arfiNHSC~P-  215 (290)
T 3bo5_A          143 LEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTK-----SDSNYIIAIREHVYNGQ-VMETFVDPTYIGNIGRFLNHSCEP-  215 (290)
T ss_dssp             SSCBCTTCEEEECCEEEECHHHHHHHHTTCCS-----SCCCCCEEEEECC------EEEEEEEEEEECGGGGCEECSSC-
T ss_pred             CCccCCCCEEEEEeeEEeCHHHHHHHHHhhcc-----cCCcceeeecccccCCc-cceeEEeeeecCCchheeeecCCC-
Confidence            99999999999999999999999988765543     23457777776543332 235789999999999999999999 


Q ss_pred             ceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCCC-------------CCCceeeeCCCCCceecCCCCC
Q 017938          301 NLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRAR-------------PRGLPCYCGSTSCFGILPSENT  363 (363)
Q Consensus       301 n~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~~-------------~~~~~C~CGs~~Crg~l~~~~~  363 (363)
                      |+..+.+..++ ..++|+|||+|||++||||||||+...+.             ...++|+|||++|||+||.|.+
T Consensus       216 N~~~~~~~~~~-~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~l~~~~~  290 (290)
T 3bo5_A          216 NLLMIPVRIDS-MVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFLPFDSS  290 (290)
T ss_dssp             SEEEEEEESSS-SSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSBCCCEEC
T ss_pred             CEEEEEEEeCC-CceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCccCCCCCC
Confidence            66655555543 35799999999999999999999986542             2467999999999999998753
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 2e-43
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 5e-41
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-26
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 1e-19
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  149 bits (377), Expect = 2e-43
 Identities = 68/291 (23%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 76  NFPIPFHNAAD-KTPYAYFIYTPSQIIPPPCPAQFPPRQFWAS--TNAAADAESNSSLSR 132
             PI   N  D       F +    II    P      +   S  ++      +   L  
Sbjct: 1   QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDE 60

Query: 133 LGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSE 192
           +  DS                ++ F         G      L+    + EC   C C  +
Sbjct: 61  MAPDSDEEAD-------PYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKD 113

Query: 193 CGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRR--QQIY 250
           C NR+ +RG +V L+I R+ ++GWG+     IK+GQF+  Y GE++T++EA RR  +   
Sbjct: 114 CPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTI 173

Query: 251 DGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGG-NLSTTLVRS 309
                    +       + L    A   + +D   +    RFINHSCD    +   +   
Sbjct: 174 ARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDH 233

Query: 310 SGSILPRLCFFASKDIKEGEELAFSYG-----------EIRARPRGLPCYC 349
           +   +  L  FA KDI +G EL F Y            +         C C
Sbjct: 234 ADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.93
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.89
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.11
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 84.55
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 84.06
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=100.00  E-value=1.8e-52  Score=397.41  Aligned_cols=246  Identities=29%  Similarity=0.514  Sum_probs=162.1

Q ss_pred             CCCeeeEeCCCCCC-CCCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccC--CCCCCCCc
Q 017938           76 NFPIPFHNAADKTP-YAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCES--DESESGCD  152 (363)
Q Consensus        76 ~~pI~~~N~vd~~~-~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--~~~~~~C~  152 (363)
                      +|||+++|+||+++ ||+|+|++++++++....   +...+                     ...|.|.+  .|....|.
T Consensus         1 ~~pi~~~N~vd~~~~p~~f~Yi~~~~~~~~~~~---~~~~~---------------------~~gC~C~~~~~c~~~~C~   56 (284)
T d1ml9a_           1 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPV---ADQSF---------------------RVGCSCASDEECMYSTCQ   56 (284)
T ss_dssp             CCCEEEECSSSSCCCCTTCEECSSCEECTTCCC---CCGGG---------------------CCCCCCSSTTGGGSTTSG
T ss_pred             CCCEEEEeCCCCCCCCCCCEECccEEeCCCCcc---CCccC---------------------CCCCCCcCCCCcCCCCCc
Confidence            58999999999985 458999999987666443   11111                     01223321  12234566


Q ss_pred             cCCCcCCCC--------CCCccCCCCCCC---------CCccceeeecCCCCCCCCCCCCccccCCCcccEEEEEeCCCC
Q 017938          153 CEECFEVGL--------GDGVFGCPCFSG---------LEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKIVRSVNKG  215 (363)
Q Consensus       153 C~~~~~~~~--------~~~~~~c~C~~~---------~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~leV~~t~~kG  215 (363)
                      |...+....        ..+.....+.+.         .....+||||++.|+|+..|.||++|+|++.+|+||+|+.||
T Consensus        57 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~lev~kt~~kG  136 (284)
T d1ml9a_          57 CLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRG  136 (284)
T ss_dssp             GGTTSCCC-----------CCSSBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCSCEEEEECSSSC
T ss_pred             ChhhcCccccccccccccccccccccccccccccccccccCCCceeCCCCCCCcCCCCCCeeccCCCccCEEEEEcCCCc
Confidence            644331100        000000001110         112345899999999999999999999999999999999999


Q ss_pred             cceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCC-----cceeEEEeccccCCcc
Q 017938          216 WGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGK-----ACLRMNIDATRIGNIA  290 (363)
Q Consensus       216 wGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~IDa~~~GN~a  290 (363)
                      |||||+++|++|+||+||+||+++.++++++...+...   .....|++.+........     ....+.|||+..||+|
T Consensus       137 ~Gv~a~~~I~kGt~I~eY~Gevi~~~ea~~~~~~~~~~---~~~~~y~~~l~~~~~~~~~~~~~~~~~~~iDa~~~GN~a  213 (284)
T d1ml9a_         137 WGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIA---RRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPT  213 (284)
T ss_dssp             EEEECSSCBCTTCEEEECCCEEECHHHHHHHHHHSCGG---GCHHHHEEECCSSCCSSSSCHHHHSCCCEEECSSEECGG
T ss_pred             eEEeeCCCcCCCCEEEEecCcccCHHHHHHHHHHHHhh---ccCCccceecccccccccccccccCCceeEeeeeccchh
Confidence            99999999999999999999999999998887655431   111223333322211000     0124789999999999


Q ss_pred             cccccCCCCCceeE--EEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCC-----------CCCCceeee
Q 017938          291 RFINHSCDGGNLST--TLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRA-----------RPRGLPCYC  349 (363)
Q Consensus       291 RFINHSC~PNn~~~--v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~-----------~~~~~~C~C  349 (363)
                      |||||||+| |+..  ++++..+..+++|+|||+|||+|||||||||++..+           ..+.++|+|
T Consensus       214 RfiNHSC~P-N~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         214 RFINHSCDP-NMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGCEECSSC-SEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             heeeccccC-CcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            999999999 5544  333444566799999999999999999999997533           134567888
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure