Citrus Sinensis ID: 017958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAISNSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFLISHSWGWQPKTAGH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEccccccEEcccccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHEEccccccEEEEEcccEEEEEccccccccHcccccccccccccEEEEcccccccEEEEccccccccccccccccccccccccccHcHccccccccccccEccccccccEEEcHHHHccHHHHHHHccHHHHHHHHHHccccccccccccHHHHHccEEccccccccccccc
Coil and Loop (DISEMBL)
mgkqgpcyhcgvtstplwrngppekpvlcnacgsrwrtkgtlanytplharaepddyedhrvSKVKsisinknkdvkvlkrksnydnvvvggfapdynhgyrkvvdedtsnrsssgsaisnsescvqfgsadasdltgpaqsnvwdsvvpskkrtcvnrpkqspvekLTKDLYTILHEqqssyfsgsseedllfesetpmvsveighgsvlirhpssiareeeseasslsveNKQYLVNESYSRSATLHvyndyqgvnfssrnMDKAKNFIEQGMQQDQLKRDKSQQEKLQILgshtsplceidlndiLNFKEFVGHLTHEEQQQLLkylplndttvfpdsnclqkgflishswgwqpktagh
Flexible Loop (DISEMBL)
MGKQGPCYHCGVtstplwrngppeKPVLCNACGSRWRTKGTLANYTPlharaepddyedhrvskvksisinknkdvkvlkrksnydnvvvggfapdynhgyRKVVDEDTSNRSSSGSAISNSESCVQFGSADASDLTgpaqsnvwdsvvpskkrtcvnrpkqspvekLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEEseasslsvenkQYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFlishswgwqpktagh
Low Complexity Region (SEG)
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRvskvksisinknkDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTsnrsssgsaisnsesCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPssiareeeseasslsveNKQYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFLISHSWGWQPKTAGH
Disordered region (IsUnstruct)
******CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA*******************IN*NKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKV******************************************************************DLYTILH*************************VEIGHGSVL************************YLVNESYSRSATLHVYNDYQGVNF********************************ILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFLISHSWGWQ******
Disordered Region (DISOPRED)
***QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKG***********************************************************************************************************************************************************************************************************************************************************************D*NDILNFKE**************************************************
Disordered Region (DISEMBL)
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVD***********************************SNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPS***************ENKQYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGM**************LQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFLISHSWGWQPKTAGH
Disordered Region (DISPRO)
********HCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA************SKVKSISINKNKDVKVLKR*****NVVVGGFAPDYNHGYRKV*******************************************************PKQSPVEKLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPS***********SL*VENKQYLVNESYSRSATLHVYNDY******************************S*QEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKG*LISH*W*WQPK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAISNSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDSNCLQKGFLISHSWGWQPKTAGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q8W4H1	510	GATA transcription factor	yes	no	0.898	0.639	0.587	1e-100
Q5PP38	470	GATA transcription factor	no	no	0.796	0.614	0.556	2e-82
Q9M1U2	204	GATA transcription factor	no	no	0.112	0.200	0.560	2e-07
Q550D5	872	Transcription factor stal	yes	no	0.112	0.047	0.512	2e-06
Q9FH57	339	GATA transcription factor	no	no	0.121	0.129	0.5	5e-06
Q9SD38	312	GATA transcription factor	no	no	0.112	0.131	0.512	5e-06
O65515	238	GATA transcription factor	no	no	0.112	0.172	0.512	6e-06
Q9SKN6	291	Putative GATA transcripti	no	no	0.112	0.140	0.487	7e-06
Q8GXL7	297	GATA transcription factor	no	no	0.168	0.205	0.364	8e-06
Q6DBP8	303	GATA transcription factor	no	no	0.112	0.135	0.487	2e-05

>sp|Q8W4H1|GAT26_ARATH GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/344 (58%), Positives = 251/344 (72%), Gaps = 18/344 (5%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPCYHCGVT+TPLWRNGPPEKPVLCNACGSRWRTKGTL NYTPLHARA+ D+ +DH
Sbjct: 1   MGKQGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDH 60

Query: 61  -RVSKVKSISI-NKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRK-VVDEDTSNRSSSGS 117
            R  ++KSIS+ NKNK++K+LKRK+  +N+++     ++++G +  V++ED SNRSSSGS
Sbjct: 61  HRFQRMKSISLGNKNKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGS 120

Query: 118 AISNSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILH 177
           A+SNSESC QF SAD S    P+QSN WD+ VP K+RTCV RPK S VEKLTKDLY IL 
Sbjct: 121 AVSNSESCAQFSSADGS----PSQSNAWDTTVPCKRRTCVGRPKSSSVEKLTKDLYNILQ 176

Query: 178 EQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYL 237
           EQQSS  S SSEEDLLFE+E  MVSVEIGHGSVL+++P S AREEESEASSLS    +  
Sbjct: 177 EQQSSCLSVSSEEDLLFENEMSMVSVEIGHGSVLMKNPHSFAREEESEASSLSSIENKSS 236

Query: 238 VNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHT 297
           ++++YS S         +G  +             Q ++Q+Q KR KSQ E++ +LGSH 
Sbjct: 237 ISDAYSHSVKRVEIGAVRGSYYGG-----------QTIKQEQFKRTKSQTERVHVLGSHG 285

Query: 298 SPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           SPLC IDL D+ NF EF+   T EEQ++L+  LP  D+   P S
Sbjct: 286 SPLCSIDLKDVFNFDEFIEQFTEEEQKKLMNLLPQIDSDDLPHS 329

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5PP38|GAT27_ARATH GATA transcription factor 27 OS=Arabidopsis thaliana GN=GATA27 PE=2 SV=1

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 193/347 (55%), Positives = 227/347 (65%), Gaps = 58/347 (16%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD--DYE 58
           MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKG+L NYTPLHARAE D  + E
Sbjct: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIE 60

Query: 59  DHRVSKV--KSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGY-RKVVDEDTSNRSSS 115
           DHR   V  K +S+NK    K+ KRK   +N  V     +++ G+ RK +DE+ SNRSSS
Sbjct: 61  DHRTQTVMIKGMSLNK----KIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSS 116

Query: 116 GSAISNSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPK-QSPVEKLTKDLYT 174
           GS +SNSESC              AQSN WDS  P K+RTCV RPK  S VEKLTKDLYT
Sbjct: 117 GSVVSNSESC--------------AQSNAWDSTFPCKRRTCVGRPKAASSVEKLTKDLYT 162

Query: 175 ILHEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENK 234
           IL EQQSS  SG+SEEDLLFE+ETPM+   +GHGSVL+R P S AREEESEASSL VE+ 
Sbjct: 163 ILQEQQSSCLSGTSEEDLLFENETPML---LGHGSVLMRDPHSGAREEESEASSLLVES- 218

Query: 235 QYLVNESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILG 294
                                    S  +   +  F  + M+Q+Q+KR KS     Q+LG
Sbjct: 219 -------------------------SKSSSVHSVKFGGKAMKQEQVKRSKS-----QVLG 248

Query: 295 SHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
            H+S LC IDL D+ NF EF+ + T EEQQ+L+K LP  D+   PDS
Sbjct: 249 RHSSLLCSIDLKDVFNFDEFIENFTEEEQQKLMKLLPQVDSVDRPDS 295

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1U2|GAT14_ARATH GATA transcription factor 14 OS=Arabidopsis thaliana GN=GATA14 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 24/41 (58%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C HCG   TPLWR GP     LCNACG R+RT   L  Y P
Sbjct: 117 CSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRP 157

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q550D5|GTAA_DICDI Transcription factor stalky OS=Dictyostelium discoideum GN=stkA PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C  CG + TP WR GP  K  LCNACG +WR KG    + P
Sbjct: 294 CEFCGSSQTPTWRRGPSGKGSLCNACGIKWRLKGKDGIFKP 334

Probable transcription factor. Seems to act on the expression of the genes culC, culD, rnpA and sigB.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 25/44 (56%)

Query: 4   QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           Q  C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct: 248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRP 291

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct: 223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRP 263

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRP 206

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKN6|GAT13_ARATH Putative GATA transcription factor 13 OS=Arabidopsis thaliana GN=GATA13 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C HC  T+TP WR GP  +  LCNACG R+R+   +  Y P
Sbjct: 193 CTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRP 233

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 7   CYHCGVT--STPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSK 64
           C HCG +  STP+ R GP     LCNACG  W  KGTL + + +     P          
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTP---------- 268

Query: 65  VKSISINKNKDVKV 78
            + +S+NKN+D  +
Sbjct: 269 -QHLSLNKNEDANL 281

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query: 7   CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
           C HC  T TP WR GP     LCNACG R+R+   +  Y P
Sbjct: 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRP 262

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
118486445	540	unknown [Populus trichocarpa]	0.928	0.624	0.800	1e-155
255580789	542	GATA transcription factor, putative [Ric	0.939	0.629	0.812	1e-153
224137944	544	predicted protein [Populus trichocarpa]	0.939	0.626	0.803	1e-152
224126641	536	predicted protein [Populus trichocarpa]	0.917	0.621	0.788	1e-151
356510812	542	PREDICTED: GATA transcription factor 26-	0.936	0.627	0.768	1e-147
356563380	544	PREDICTED: GATA transcription factor 26-	0.936	0.625	0.762	1e-146
147795773	542	hypothetical protein VITISV_006083 [Viti	0.939	0.629	0.780	1e-141
302398807	542	GATA domain class transcription factor [	0.933	0.625	0.752	1e-139
449461305	541	PREDICTED: GATA transcription factor 26-	0.939	0.630	0.725	1e-138
356497097	551	PREDICTED: GATA transcription factor 26-	0.936	0.617	0.758	1e-136

>gi|118486445|gb|ABK95062.1| unknown [Populus trichocarpa]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/341 (80%), Positives = 296/341 (86%), Gaps = 4/341 (1%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPC HCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH
Sbjct: 1   MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS++KS+SI+KNK+VK+LKRK NYDN V    A DYN GYRKVVDEDTSNRSSSGSAIS
Sbjct: 61  RVSRLKSVSISKNKEVKLLKRKPNYDNRV----ALDYNQGYRKVVDEDTSNRSSSGSAIS 116

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           N ESC QFGSA+ASDLTGPAQS VWDS+VPS+KRTCVNRPK S VEKLTKDLYTILHEQQ
Sbjct: 117 NPESCAQFGSAEASDLTGPAQSVVWDSLVPSRKRTCVNRPKPSSVEKLTKDLYTILHEQQ 176

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SS FSGSSEEDLLF++ETPMVSVEIGHGSVLIRHPSSIAR+EESEASSLSVENKQYL NE
Sbjct: 177 SSCFSGSSEEDLLFDNETPMVSVEIGHGSVLIRHPSSIARDEESEASSLSVENKQYLTNE 236

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS    L V+N+ + VN +    +  KN   QGMQQ+QLKRDK   EK+ ILGSH SPL
Sbjct: 237 AYSHPVILPVHNENKSVNTTYPITETTKNLTGQGMQQEQLKRDKFPHEKVHILGSHNSPL 296

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C IDLNDILNF+EF  HLT+EEQQQLLKYLP  DTT  P+S
Sbjct: 297 CSIDLNDILNFEEFARHLTNEEQQQLLKYLPPLDTTKLPNS 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580789|ref|XP_002531215.1| GATA transcription factor, putative [Ricinus communis] gi|223529175|gb|EEF31151.1| GATA transcription factor, putative [Ricinus communis]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/341 (81%), Positives = 302/341 (88%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPC HCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARA+PDDYEDH
Sbjct: 1   MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARADPDDYEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS+VKSISINKNKDVK+LKRK+N+DN VVGG   DYN GYRKV+DED SNRSSSGSAIS
Sbjct: 61  RVSRVKSISINKNKDVKLLKRKANHDNGVVGGVVHDYNQGYRKVLDEDISNRSSSGSAIS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFGSADASDLTGPAQS VWDS+VPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ
Sbjct: 121 NSESCAQFGSADASDLTGPAQSVVWDSMVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SS FSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAR+EESEASSLSVENKQ   NE
Sbjct: 181 SSCFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIARDEESEASSLSVENKQCSTNE 240

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS S  L V+   + ++  S  ++KAKN I QG+Q +QLKRDK Q E++Q+LG+H SPL
Sbjct: 241 AYSHSLGLLVHIGNKNIHTPSLLIEKAKNPIGQGLQHEQLKRDKFQHERVQVLGNHNSPL 300

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C +DLNDILNF+EF  +LT+EEQQQLLKYLP  DT   PDS
Sbjct: 301 CNVDLNDILNFEEFARYLTNEEQQQLLKYLPPVDTAQLPDS 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137944|ref|XP_002326479.1| predicted protein [Populus trichocarpa] gi|222833801|gb|EEE72278.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/341 (80%), Positives = 296/341 (86%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPC HCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARA PDDYEDH
Sbjct: 1   MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAGPDDYEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS++KSIS+NKN++VK+LKRK NYD+ V  G A DYN GYRKVVDEDTSNRSSSGSAIS
Sbjct: 61  RVSRLKSISMNKNREVKLLKRKPNYDHRVAEGVALDYNEGYRKVVDEDTSNRSSSGSAIS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFGSADASDLTGPAQS VWDS+VPS+KRTCVNRPK SPVEKLTKDLYTILHEQQ
Sbjct: 121 NSESCAQFGSADASDLTGPAQSVVWDSLVPSRKRTCVNRPKPSPVEKLTKDLYTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SS FSGSSEEDLLF++ETPMVSVEIGHGSVLIRHPSSIAR+EESEASSLSVENKQY  NE
Sbjct: 181 SSCFSGSSEEDLLFDNETPMVSVEIGHGSVLIRHPSSIARDEESEASSLSVENKQYSTNE 240

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS    L V+N+ Q VN +     K KN   QGMQQ+QL RDKS  EK+ ILGSH SPL
Sbjct: 241 AYSHPVILPVHNENQSVNMTYPVTVKTKNLSGQGMQQEQLNRDKSPHEKVHILGSHNSPL 300

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C +DLNDILNF+EF  HLT+EEQQQLLKYLP  DT   P+S
Sbjct: 301 CSVDLNDILNFEEFARHLTNEEQQQLLKYLPPLDTAKLPNS 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126641|ref|XP_002329605.1| predicted protein [Populus trichocarpa] gi|222870314|gb|EEF07445.1| predicted protein [Populus trichocarpa]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/341 (78%), Positives = 292/341 (85%), Gaps = 8/341 (2%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPC HCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH
Sbjct: 1   MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS++KS+SI+KNK+VK+LKRK NYDN V    A DYN GYRKVVDEDTSNRSSSGSAIS
Sbjct: 61  RVSRLKSVSISKNKEVKLLKRKPNYDNRV----ALDYNQGYRKVVDEDTSNRSSSGSAIS 116

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           N ESC QFGSA+AS    PAQS VWDS+VPS+KRTCVNRPK S VEKLTKDLYTILHEQQ
Sbjct: 117 NPESCAQFGSAEAS----PAQSVVWDSLVPSRKRTCVNRPKPSSVEKLTKDLYTILHEQQ 172

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SS FSGSSEEDLLF++ETPMVSVEIGHGSVLIRHPSSIAR+EESEASSLSVENKQYL NE
Sbjct: 173 SSCFSGSSEEDLLFDNETPMVSVEIGHGSVLIRHPSSIARDEESEASSLSVENKQYLTNE 232

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS    L V+N+ + VN +    +  KN   QGMQQ+QLKRDK   EK+ ILGSH SPL
Sbjct: 233 AYSHPVILPVHNENKSVNTTYPITETTKNLTGQGMQQEQLKRDKFPHEKVHILGSHNSPL 292

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C IDLNDILNF+EF  HLT+EEQQQLLKYLP  DTT  P+S
Sbjct: 293 CSIDLNDILNFEEFARHLTNEEQQQLLKYLPPLDTTKLPNS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510812|ref|XP_003524128.1| PREDICTED: GATA transcription factor 26-like [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/341 (76%), Positives = 300/341 (87%), Gaps = 1/341 (0%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAE  DYED 
Sbjct: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQ 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           +VS+VKSIS+NKNK+VK+ KRK NYDN   GGF PDY+ GY+KVVDEDTSNRSSSGSA+S
Sbjct: 61  KVSRVKSISLNKNKEVKLAKRKQNYDNAASGGFVPDYSQGYQKVVDEDTSNRSSSGSAVS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFG  DASDLTGPAQS VWD++VPSKKRTC  RPK S VEKLT+DL TILHEQQ
Sbjct: 121 NSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
            SYFS SSEEDLLFES+TPMVSVEIGHGS+LIRHPSSIAR+EESEASSLSV+NKQ L+NE
Sbjct: 181 -SYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNE 239

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS S+T+ +Y+D  G+NFSS  ++K KN   Q M+Q++L+RDKSQ EKLQ+ G+H SPL
Sbjct: 240 AYSFSSTIPMYSDRSGMNFSSHGVEKIKNSAGQIMKQEKLERDKSQLEKLQVPGNHDSPL 299

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C IDLND++N++EF+ +LT+EEQQQLLKYLP+ DT  FPDS
Sbjct: 300 CSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTAKFPDS 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563380|ref|XP_003549942.1| PREDICTED: GATA transcription factor 26-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/341 (76%), Positives = 298/341 (87%), Gaps = 1/341 (0%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAE  DYED 
Sbjct: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENIDYEDQ 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           +VS+VKSIS+NKN +VK++KRK NY N   GGF PDY+ GYRKVVDEDTSNRSSSGSA+S
Sbjct: 61  KVSRVKSISLNKNTEVKLVKRKQNYGNAASGGFVPDYSQGYRKVVDEDTSNRSSSGSAVS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFG  DASDLTGPAQS VWD++VPSKKRTC  RPK S VEKLT+DL TILHEQQ
Sbjct: 121 NSESCAQFGGPDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
            SYFS SSEEDLLFES+TPMVSVEIGHGS+LIRHPSSIAR+EESEASSLSV+NKQ L+NE
Sbjct: 181 -SYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNE 239

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
           +YS S+T+ +Y+D   +NFSS  ++K KN   Q MQQ++L+RDKSQ EKLQ+ G+H SPL
Sbjct: 240 AYSFSSTIPIYSDRSSMNFSSHGVEKIKNSAGQIMQQEKLERDKSQLEKLQVHGNHDSPL 299

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           C IDLND++N++EF+ +LT+E+QQQLLKYLP+ DT  FPDS
Sbjct: 300 CSIDLNDVVNYEEFMRNLTNEQQQQLLKYLPVVDTAKFPDS 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795773|emb|CAN76534.1| hypothetical protein VITISV_006083 [Vitis vinifera]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/341 (78%), Positives = 291/341 (85%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGK GPCYHCGVT+TPLWRNGPPEKPVLCNACGSRWRTKGTL NYTPLHAR + DD ED+
Sbjct: 1   MGKHGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLENYTPLHARVDGDDAEDY 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS+VKSISINKNK+VK+LKRK N DNVVV G A DY+ G RK +DEDTSNRSSSGSAIS
Sbjct: 61  RVSRVKSISINKNKEVKLLKRKQNQDNVVVNGVASDYSQGSRKAIDEDTSNRSSSGSAIS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFGSADASDLTGP+QS VWD++VPS+KRTCVNRPK S VEKLTKDL TILHEQQ
Sbjct: 121 NSESCAQFGSADASDLTGPSQSIVWDTMVPSRKRTCVNRPKPSSVEKLTKDLCTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPS+I REEESEASSLSV+NK YLVNE
Sbjct: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSAIGREEESEASSLSVDNKSYLVNE 240

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
            YSR   L V  + +G+NF S  ++K K     GMQQ+Q KRDKSQ EKLQIL +H SPL
Sbjct: 241 VYSRIGALPVNTNNKGINFPSPGLEKMKKPAGLGMQQEQTKRDKSQHEKLQILANHNSPL 300

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
             IDL D++NF+EFVGHLT+EEQ QLLKYLP  DT   PDS
Sbjct: 301 RSIDLKDVVNFEEFVGHLTNEEQLQLLKYLPSEDTAKLPDS 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398807|gb|ADL36698.1| GATA domain class transcription factor [Malus x domestica]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/339 (75%), Positives = 294/339 (86%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPCYHCGVTSTPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHARAEPDD+EDH
Sbjct: 1   MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARAEPDDFEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS+VKSIS+NK+K++K++KRK N +++V+GG   DY+HG+RK+++ED SNRSSSGSA+S
Sbjct: 61  RVSRVKSISVNKSKEIKLVKRKQNPESMVIGGVNSDYSHGFRKIIEEDKSNRSSSGSAVS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           NSESC QFGS DASDLTGPAQS VWDS+VPS+KRTC+ R K SPVE+LTKDLYTILHEQQ
Sbjct: 121 NSESCAQFGSGDASDLTGPAQSMVWDSMVPSRKRTCIGRLKPSPVERLTKDLYTILHEQQ 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SS FSGSSEEDLLFESETPMVSVEIGHGSVLIRHP+SIAREEESEASS+SV+NKQ L NE
Sbjct: 181 SSCFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPNSIAREEESEASSISVDNKQCLANE 240

Query: 241 SYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSPL 300
            YSRSATL V+N+ +GVN +S    +  N   +GMQ + LKRDKSQ +  QILG+H SPL
Sbjct: 241 VYSRSATLFVHNNNKGVNMASTVSGRMNNVAGEGMQHEPLKRDKSQLDNFQILGNHNSPL 300

Query: 301 CEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFP 339
             +DLNDILNF+EF   LT+EEQQQLLK+LP  D   FP
Sbjct: 301 RHVDLNDILNFEEFTRQLTNEEQQQLLKHLPAVDVVKFP 339

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461305|ref|XP_004148382.1| PREDICTED: GATA transcription factor 26-like [Cucumis sativus] gi|449517838|ref|XP_004165951.1| PREDICTED: GATA transcription factor 26-like [Cucumis sativus]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/342 (72%), Positives = 289/342 (84%), Gaps = 1/342 (0%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGK GPC HCGVTSTPLWRNGPP+KPVLCNACGSRWRTKGTLANYTPLHARA+PD+YEDH
Sbjct: 1   MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDH 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS++KSISINKNK+VK+LKRK    +  +G   PD   GY +VVDEDTSNRSSSGSAIS
Sbjct: 61  RVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAIS 120

Query: 121 NSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHEQQ 180
           N ESC  F SADASDLTGPAQS VW+S+VPS+KRTCVNRPKQSPVEKLTKDLY+IL EQ+
Sbjct: 121 NPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQR 180

Query: 181 SSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNE 240
           SSYFS +SE+DLLFESE PMVSVEIGHGS+LIRHPSSIAREEESEASS+SV+NKQ LVNE
Sbjct: 181 SSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNE 240

Query: 241 SYS-RSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTSP 299
            YS  S T+ V ++ +G+NF +  + K KN    G+QQ+Q+KR+ S  E LQILG+H SP
Sbjct: 241 VYSPHSTTVRVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILGNHNSP 300

Query: 300 LCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           LC++D+NDI+NF+EF   LT+EEQQQL+KYLP  D   FP++
Sbjct: 301 LCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDIAEFPET 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497097|ref|XP_003517400.1| PREDICTED: GATA transcription factor 26-like [Glycine max]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/343 (75%), Positives = 292/343 (85%), Gaps = 3/343 (0%)

Query: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDH 60
           MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLA YTPLHARAE DDY+D 
Sbjct: 1   MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLAKYTPLHARAETDDYDDQ 60

Query: 61  RVSKVKSISINKNKDVKVLKRKSNYDNVVVGGFAPDYNHGYRKVVDEDTSNRSSSGSAIS 120
           RVS+VKSISINK K+V +LKRK N+DNVV GGFAPDYN GY+KVVDED SNRSSSGSAIS
Sbjct: 61  RVSRVKSISINKKKEVALLKRKQNHDNVVSGGFAPDYNQGYQKVVDEDISNRSSSGSAIS 120

Query: 121 NSESCVQF--GSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPVEKLTKDLYTILHE 178
           NSESC QF  G  DASDLTGPAQS VWD++VPS+KRTCV RPK S VEKLTKDL TILHE
Sbjct: 121 NSESCAQFGYGGMDASDLTGPAQSVVWDAMVPSRKRTCVGRPKPSSVEKLTKDLCTILHE 180

Query: 179 QQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLV 238
           QQ SYFS SSEEDLLFES+TPMVSVEIGHGS+LIRHPS IAREEESEASSLSV+NKQ  +
Sbjct: 181 QQ-SYFSVSSEEDLLFESDTPMVSVEIGHGSILIRHPSYIAREEESEASSLSVDNKQCPM 239

Query: 239 NESYSRSATLHVYNDYQGVNFSSRNMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGSHTS 298
           +E+YS S  + ++ND   +  SS  ++K  N   QGMQQ+QLK DKSQ E++QILG+H S
Sbjct: 240 SEAYSFSGAIAMHNDSSRLKSSSLEVEKIGNSTGQGMQQEQLKSDKSQLERVQILGNHES 299

Query: 299 PLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFPDS 341
           PLC IDLND++N++EF+  LT+EEQQQLLK LP+ DT   PDS
Sbjct: 300 PLCSIDLNDVVNYEEFLRILTNEEQQQLLKLLPVVDTAKLPDS 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2151987	470	GATA27 "GATA transcription fac	0.539	0.417	0.566	1.1e-72
TAIR|locus:2096860	204	GATA14 "GATA transcription fac	0.112	0.200	0.560	7.9e-07
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.090	0.221	0.575	1.3e-05
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.101	0.266	0.540	1.4e-05
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.121	0.129	0.5	5.3e-05
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.112	0.172	0.512	6.4e-05
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.132	0.175	0.42	7.3e-05
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.112	0.131	0.512	0.00013
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.085	0.258	0.548	0.00013
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.148	0.183	0.440	0.00015

TAIR|locus:2151987 GATA27 "GATA transcription factor 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 124/219 (56%), Positives = 141/219 (64%)

Query:     1 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDD--YE 58
             MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKG+L NYTPLHARAE D+   E
Sbjct:     1 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIE 60

Query:    59 DHRXXXXXXXXXXXXXDVKVLKRKSNYDNVVVGGFAPDYNHGY-RKVVDEDTXXXXXXXX 117
             DHR             + K+ KRK   +N  V     +++ G+ RK +DE+         
Sbjct:    61 DHRTQTVMIKGMSL--NKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGS 118

Query:   118 XXXXXXXCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQ-SPVEKLTKDLYTIL 176
                    C              AQSN WDS  P K+RTCV RPK  S VEKLTKDLYTIL
Sbjct:   119 VVSNSESC--------------AQSNAWDSTFPCKRRTCVGRPKAASSVEKLTKDLYTIL 164

Query:   177 HEQQSSYFSGSSEEDLLFESETPMVSVEIGHGSVLIRHP 215
              EQQSS  SG+SEEDLLFE+ETPM+   +GHGSVL+R P
Sbjct:   165 QEQQSSCLSGTSEEDLLFENETPML---LGHGSVLMRDP 200

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2096860 GATA14 "GATA transcription factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 23/41 (56%), Positives = 24/41 (58%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
             C HCG   TPLWR GP     LCNACG R+RT   L  Y P
Sbjct:   117 CSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRP 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 19/33 (57%), Positives = 20/33 (60%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39
             C  CG + TPLWR GP     LCNACG R R K
Sbjct:    43 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 75

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query:     3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39
             K+  C  CG + TPLWR GP     LCNACG R R K
Sbjct:    34 KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKK 70

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 22/44 (50%), Positives = 25/44 (56%)

Query:     4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
             Q  C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct:   248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRP 291

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
             C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct:   166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRP 206

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query:     1 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50
             MG++  C HCG   TP WR GP     LCNACG R+++   +  Y P ++
Sbjct:   192 MGRK--CQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANS 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTP 47
             C HCGV  TP WR GP     LCNACG R+++   L  Y P
Sbjct:   223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRP 263

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWR 37
             C  C  T TP+WR GP     LCNACG R R
Sbjct:    28 CSECKTTKTPMWRGGPTGPKSLCNACGIRHR 58

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/59 (44%), Positives = 29/59 (49%)

Query:     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRW-----RTKGTLANYTPLHARAEPDDYEDH 60
             C +C  TSTPLWRNGP     LCNACG R+     RT     N     A  + D Y  H
Sbjct:   154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGNTVVGAAPVQTDQYGHH 212

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4H1	GAT26_ARATH	No assigned EC number	0.5872	0.8980	0.6392	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290099 hypothetical protein (544 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-15
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-14
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-12

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 6  PCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEP 54
           C +CG T+TPLWR GP     LCNACG  W+  G      PL  R + 
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV---MRPLSKRKKD 46

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 19/36 (52%), Positives = 21/36 (58%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL 42
          C +CG T TPLWR GP     LCNACG  +R  G  
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 6  PCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEP 54
           C +CG T TPLWR GP     LCNACG  ++  G L    PL  + + 
Sbjct: 5  SCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKR--PLSLKKDG 51

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.54
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.51
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.41
PF13919	138	ASXH: Asx homology domain	99.28
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.72
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.45
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	91.16
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	88.52

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.54  E-value=3.3e-15  Score=112.27  Aligned_cols=47  Identities=47%  Similarity=1.107  Sum_probs=42.7

Q ss_pred             ccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCC-CCC
Q 017958            6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARA-EPD   55 (363)
Q Consensus         6 ~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rk-d~i   55 (363)
                      .|+||++++||+||+||.|..+|||||||||++++..   ||+.++. +.+
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~---rp~~~~~~~~~   48 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVM---RPLSKRKKDQI   48 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCC---CCcccCccccc
Confidence            5999999999999999988899999999999999977   9998887 444

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.51  E-value=1.1e-14  Score=108.42  Aligned_cols=50  Identities=44%  Similarity=0.998  Sum_probs=43.5

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCC
Q 017958            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAE   53 (363)
Q Consensus         2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd   53 (363)
                      +..+.|+||+++.||+||+||.|..+|||||||||++++.+  .||+.+.++
T Consensus         1 ~~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~--~rp~~~~~~   50 (52)
T smart00401        1 GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL--KRPLSLKKD   50 (52)
T ss_pred             CCCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC--CCccccccc
Confidence            45789999999999999999999889999999999999886  367666554

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.41  E-value=4.4e-14  Score=98.12  Aligned_cols=36  Identities=47%  Similarity=1.127  Sum_probs=28.9

Q ss_pred             cccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC
Q 017958            7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL   42 (363)
Q Consensus         7 CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~   42 (363)
                      |.||+++.||+||++|.|..+||||||+||++++++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999999999999999988999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF13919 ASXH: Asx homology domain

Probab=99.28  E-value=1.8e-12  Score=113.52  Aligned_cols=60  Identities=43%  Similarity=0.460  Sum_probs=53.7

Q ss_pred             hhhhhhhhcchhhhhhhhcccCCCCceeccccccccHHHHHhhhCHHHHHHHHhcCCCCCCCCC
Q 017958          275 MQQDQLKRDKSQQEKLQILGSHTSPLCEIDLNDILNFKEFVGHLTHEEQQQLLKYLPLNDTTVF  338 (363)
Q Consensus       275 ~~~~~~k~~~~~~~~~~~l~~~~spl~~~dl~d~~nf~~f~~~~t~~eq~~l~~~l~~~d~~~~  338 (363)
                      +...++|+++..   .+||+++.||||.+||++|+|+++| ..||+|||++||+|||.||....
T Consensus         8 ~~~~~~k~~~~~---~~~l~sp~SpL~~~dLr~L~N~~tw-~~L~~eeq~eLl~LLP~~D~~~~   67 (138)
T PF13919_consen    8 PSKAQLKRKWSE---EIDLTSPKSPLVNADLRALLNPETW-SCLPEEEQQELLKLLPEVDRQVG   67 (138)
T ss_pred             CCcccccCCccc---ceeecCCCCcccccCHHHHhCHHHH-hcCCHHHHHHHHHhCCCCCcccc
Confidence            455677777744   6799999999999999999999999 99999999999999999999775

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.72  E-value=7.8e-09  Score=89.76  Aligned_cols=49  Identities=43%  Similarity=0.938  Sum_probs=43.1

Q ss_pred             CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      ...|.+|+++.||+||+++.|...+|||||++++++++.   |++.+....+
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~---r~~~~~~~~~  247 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVR---RPLPEKRPAS  247 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCcc---ccccccCccc
Confidence            478999999999999999999888999999999999833   7777777666

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.45  E-value=7.4e-08  Score=99.54  Aligned_cols=47  Identities=36%  Similarity=0.768  Sum_probs=44.0

Q ss_pred             CccccCCCCCCCcccCCCC-----CCCcccchhhhhHHhcCCCCCCC-CCcCCCCCC
Q 017958            5 GPCYHCGVTSTPLWRNGPP-----EKPVLCNACGSRWRTKGTLANYT-PLHARAEPD   55 (363)
Q Consensus         5 r~CsnCgTt~TPlWRrGp~-----G~~~LCNACGL~~k~~g~~~~~R-Pl~~rkd~i   55 (363)
                      .+|.||.|+.||+|||+..     | -+||||||||++.||++   | |+.++.+.+
T Consensus       159 ~vc~Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~---r~P~t~ks~~~  211 (498)
T COG5641         159 HVCSNCKTTSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSP---RAPISLKSDSI  211 (498)
T ss_pred             chhccccccCCccccccccccccCC-ccccccccccccccCCc---CCCcccccccc
Confidence            4899999999999999999     6 56999999999999999   6 999999999

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=91.16  E-value=0.14  Score=54.11  Aligned_cols=39  Identities=28%  Similarity=0.614  Sum_probs=32.6

Q ss_pred             CCccccCCCCCCCcc--cCCCCCCCcccchhhhhHHhcCCC
Q 017958            4 QGPCYHCGVTSTPLW--RNGPPEKPVLCNACGSRWRTKGTL   42 (363)
Q Consensus         4 ~r~CsnCgTt~TPlW--RrGp~G~~~LCNACGL~~k~~g~~   42 (363)
                      .+.|.+|+|++.-.|  .-+|+-+..||-.|-+|||+.|-+
T Consensus       386 g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccccccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            468999999999999  445555778999999999998754

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=88.52  E-value=0.25  Score=52.10  Aligned_cols=48  Identities=31%  Similarity=0.593  Sum_probs=39.4

Q ss_pred             CccccCCC-CCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            5 GPCYHCGV-TSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         5 r~CsnCgT-t~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      .-|.+|++ +.||.||+...-.-++|||||++.+..+..   +|+.-+.+.+
T Consensus       298 ~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~---~p~~pk~d~n  346 (498)
T COG5641         298 KKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSK---RPLLPKPDPN  346 (498)
T ss_pred             cCcccccccccCcccccccccccccccccccccCCcccc---cccCCCCChh
Confidence            45677776 789999988776678999999999999988   8877777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-11
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-10
3dfx_A	63	Trans-acting T-cell-specific transcription factor	6e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          C +C VT T  WRN   ++ + CNAC    R    
Sbjct: 11 CSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK 45

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 2  GKQGP-CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          G +   C +CG T+TPLWR        LCNACG   +  G 
Sbjct: 1  GSEARECVNCGATATPLWRRDRTGHY-LCNACGLYHKMNGQ 40

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          C +C   +TPLWR  P  +P LCNACG   +  G 
Sbjct: 4  CTNCFTQTTPLWRRNPEGQP-LCNACGLFLKLHGV 37

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 51.2 bits (122), Expect = 6e-09
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          C +C  T+T LWR      P +CNACG  ++    
Sbjct: 10 CANCQTTTTTLWRRNANGDP-VCNACGLYYKLHNI 43

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 50.4 bits (120), Expect = 9e-09
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          C +C   +TPLWR  P  +P LCNACG   +  G 
Sbjct: 12 CTNCFTQTTPLWRRNPEGQP-LCNACGLFLKLHGV 45

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 49/378 (12%), Positives = 96/378 (25%), Gaps = 125/378 (33%)

Query: 56  DYEDHRVSK--VKSISINKNKDVKVL--------KRKSNYDNVVVGGFAPDYNHGYRKVV 105
           D     +SK  +  I ++K+     L        K++      V      +Y      + 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 106 DEDTSNRSSSGSAISNSESCVQFGSADASDLTGPAQSNVWDSVVPSKKRTCVNRPKQSPV 165
            E    R  S       E                 +  +++      K   V+R +  P 
Sbjct: 100 TE---QRQPSMMTRMYIE----------------QRDRLYNDNQVFAKYN-VSRLQ--PY 137

Query: 166 EKLTKDL-------YTILH--------------------EQQSSY------FSGSSEEDL 192
            KL + L         ++                     + +  +          +  + 
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 193 LFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVENKQYLVNESYSRSATL---- 248
           + E    ++     + +    H S+I     S  + L    ++ L ++ Y     L    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENC--LLVLL 251

Query: 249 HVYN--DYQGVNFSSR---------NMDKAKNFIEQGMQQDQLKRDKSQQEKLQILGS-- 295
           +V N   +   N S +           D         +  D      +  E   +L    
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 296 ------------HTSPL--------CEIDLNDILNFKE------------FVGHLTHEEQ 323
                        T+P             L    N+K              +  L   E 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 324 QQLLKYLPLNDTTVFPDS 341
           +++   L     +VFP S
Sbjct: 372 RKMFDRL-----SVFPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.71
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.7
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.66
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.64
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.59
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.52
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.27

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.71  E-value=3.4e-18  Score=131.57  Aligned_cols=48  Identities=31%  Similarity=0.655  Sum_probs=45.7

Q ss_pred             CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      ...|.||+++.||+||+||+|+ +|||||||||++++++   ||+.+++++|
T Consensus         7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~---RP~~~~~~~i   54 (63)
T 3dfx_A            7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN---RPLTMKKEGI   54 (63)
T ss_dssp             TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred             CCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC---CCcCcCCCcc
Confidence            4789999999999999999997 8999999999999997   9999999998

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.70  E-value=5.8e-18  Score=131.20  Aligned_cols=50  Identities=34%  Similarity=0.740  Sum_probs=47.4

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      |..+.|+||++++||+||+||.|. +|||||||||++|+++   ||+.++++.|
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~---RP~~~k~~~i   56 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSLKTDVI   56 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC---CCGGGCCSCC
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC---Cchhhccccc
Confidence            567899999999999999999997 8999999999999998   9999999988

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.66  E-value=2.8e-17  Score=117.97  Aligned_cols=42  Identities=40%  Similarity=0.884  Sum_probs=39.4

Q ss_pred             CccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcC
Q 017958            5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA   50 (363)
Q Consensus         5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~   50 (363)
                      +.|++|+++.||+||+||+|. +|||||||||++||++   ||+++
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL   43 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC---CCCCC
Confidence            689999999999999999997 8999999999999998   88865

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.64  E-value=1.2e-16  Score=116.27  Aligned_cols=43  Identities=42%  Similarity=0.891  Sum_probs=39.7

Q ss_pred             CCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCc
Q 017958            3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH   49 (363)
Q Consensus         3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~   49 (363)
                      ..+.|.||++++||+||+||.|. +|||||||||++++++   ||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN---RPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC---CCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC---CCCC
Confidence            46789999999999999999996 8999999999999998   8874

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.59  E-value=6.9e-17  Score=126.84  Aligned_cols=51  Identities=31%  Similarity=0.465  Sum_probs=41.9

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      +....|+||+|+.||+||+|+.+..+|||||||||+++++.   ||+.++.+.+
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~---RP~~~~~~~~   56 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT---RPVTAVNKYQ   56 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC---CCTHHHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC---CCcccchhhh
Confidence            45689999999999999995444448999999999999998   9988887544

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.52  E-value=3.6e-15  Score=125.63  Aligned_cols=48  Identities=31%  Similarity=0.647  Sum_probs=45.7

Q ss_pred             CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      ...|+||+++.||+||+||+| .+|||||||||++|++.   ||+.++++.|
T Consensus        59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i  106 (115)
T 4hc9_A           59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGI  106 (115)
T ss_dssp             TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred             cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccch
Confidence            468999999999999999999 67999999999999998   9999999998

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.27  E-value=1.4e-12  Score=109.89  Aligned_cols=42  Identities=45%  Similarity=0.886  Sum_probs=37.8

Q ss_pred             CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCc
Q 017958            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH   49 (363)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~   49 (363)
                      .+.|.||+++.||+||+|+.| .+|||||||||++++++   ||+.
T Consensus         5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~n---RP~~   46 (115)
T 4hc9_A            5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQN---RPLI   46 (115)
T ss_dssp             -CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCCS
T ss_pred             CCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccc---cccc
Confidence            578999999999999999999 57999999999999998   7753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	5e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	4e-12
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	8e-11

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (147), Expect = 5e-13
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
          C +CG T+TPLWR        LCNACG   +  G 
Sbjct: 5  CVNCGATATPLWRRDRTGHY-LCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 57.9 bits (140), Expect = 4e-12
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL 42
          C +C   +TPLWR  P  +P LCNACG   +  G +
Sbjct: 3  CTNCFTQTTPLWRRNPEGQP-LCNACGLFLKLHGVV 37

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.0 bits (132), Expect = 8e-11
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 7  CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAE 53
          C +C  ++T LWR  P   P +CNACG  ++         PL  R +
Sbjct: 7  CSNCQTSTTTLWRRSPMGDP-VCNACGLYYKLHQV---NRPLTMRKD 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.7
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.7
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.63

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.70  E-value=1.7e-18  Score=122.48  Aligned_cols=41  Identities=41%  Similarity=0.915  Sum_probs=38.4

Q ss_pred             ccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcC
Q 017958            6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA   50 (363)
Q Consensus         6 ~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~   50 (363)
                      .|.||++++||+||+||.|. +|||||||||++||++   ||++|
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G~-~lCNACGl~~k~~g~~---RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred             cCCCCCCCCCccceeCCCCC-CchhhhhHHHHHcCCC---CCCCC
Confidence            69999999999999999994 6999999999999998   89875

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=3.5e-18  Score=130.78  Aligned_cols=48  Identities=31%  Similarity=0.669  Sum_probs=45.1

Q ss_pred             CCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCCCCCCCCcCCCCCC
Q 017958            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (363)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~~~~RPl~~rkd~i   55 (363)
                      ...|+||+|+.||+||+||.| .+|||||||||+++++.   ||+.+++++|
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~---RP~~~~~~~i   51 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVN---RPLTMRKDGI   51 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCSC---CCGGGCCSSC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCCc---CCcccccccc
Confidence            467999999999999999999 47999999999999998   9999999998

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4e-17  Score=113.81  Aligned_cols=39  Identities=41%  Similarity=0.904  Sum_probs=35.6

Q ss_pred             CCCccccCCCCCCCcccCCCCCCCcccchhhhhHHhcCCC
Q 017958            3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL   42 (363)
Q Consensus         3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~g~~   42 (363)
                      +.+.|.||++++||+||+||.|. +|||||||||++||+.
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G~-~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTSC-EECSSHHHHHHHSCCC
T ss_pred             CcCCCCCCCCCCCcccccCCCCC-EeeHHhHHHHHHhCCC
Confidence            35789999999999999999995 6999999999999873