Citrus Sinensis ID: 017972

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
cccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHccccEEEEEEEcEEEEEcEEEEEccccEEEcccccEEEEEcccEEEEEEEEEEEEcEEEEccccccccEEccccccccccccccccEEEEEcccEEEEEcccccccccccEEEEccccEEEEEEEEEccccEEEEEEccc
cccccccccccEccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHcHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEcccccccccEEEEEccc
mengesirgpfcwstyqtdsaedththISSLSLSLSLLLFLSSFLFFLGCvwgvgkrekikennAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSkhavdnpdEIASMVEMStrnsterrklgyfscgtgnpiddcwrcdgnwhknRKRLAdcgigfgrnaiggrdgrfyvvtdprdddpvnpkpgtlrhaviqdkplwIVFKRDMVIQLKQELIVNSFKtidgrganvhianggcitIQFVTNVIIHGlhvhdckptgnamvrsspthygwrtvadgdaisifgsshiwidhnslshcadglvdAVMGSTAitisnnhmthhnevclysifq
mengesirgpfCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLAsvrneqdvsvsRKMKAESSMNSTMAAKAEVVAEALSKhavdnpdeIASMVEMstrnsterrklgyfscgtgnpiddCWRCDGNWHKNRKRLADCGIGfgrnaiggrdgrFYVVTdprdddpvnpkpgtlrhaviqdkplWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITisnnhmthhNEVCLYSIFQ
MENGESIRGPFCWSTYQTDSAEDTHTHIsslslslslllflssflfflGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
********GPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASV***********************************************************KLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTD************TLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIF*
*****SI**PFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIA********************CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNE*********************KAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
******IRGPFCW***QTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q940Q1 431 Probable pectate lyase 1 yes no 0.735 0.619 0.763 1e-129
Q944R1 470 Probable pectate lyase 15 no no 0.724 0.559 0.741 1e-125
Q9M8Z8 416 Probable pectate lyase 8 no no 0.730 0.637 0.709 1e-120
Q9LJ42 440 Probable pectate lyase 10 no no 0.650 0.536 0.809 1e-117
Q93WF1 417 Probable pectate lyase 20 no no 0.730 0.635 0.693 1e-112
Q9LRM5 452 Probable pectate lyase 9 no no 0.774 0.621 0.671 1e-109
Q9SVQ6 438 Putative pectate lyase 14 no no 0.768 0.636 0.684 1e-109
Q93Z25 432 Probable pectate lyase 22 no no 0.644 0.541 0.713 1e-102
Q9FXD8 408 Probable pectate lyase 5 no no 0.603 0.536 0.726 2e-97
Q9C5M8 408 Probable pectate lyase 18 no no 0.661 0.588 0.680 5e-94
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/288 (76%), Positives = 243/288 (84%), Gaps = 21/288 (7%)

Query: 75  LCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDE 134
           L   + L+ FVG + +  ++   S+ R  + E                  ++HAV NPDE
Sbjct: 8   LLAMMCLLFFVGAMENTTHDNISSLPRSDETE-----------------WNQHAVTNPDE 50

Query: 135 IA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRN 190
           +A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRN
Sbjct: 51  VADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRN 110

Query: 191 AIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFK 250
           AIGGRDGRFYVVTDPRDD+PVNP+PGTLRHAVIQD+PLWIVFKRDMVIQLKQELIVNSFK
Sbjct: 111 AIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFK 170

Query: 251 TIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDA 310
           TIDGRGANVHIANGGCITIQFVTNVI+HGLH+HDCKPTGNAMVRSS TH+GWRT+ADGDA
Sbjct: 171 TIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDA 230

Query: 311 ISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCL 358
           ISIFGSSH+WIDHNSLSHCADGLVDAVMGSTAITISNNH+THHNEV L
Sbjct: 231 ISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVML 278

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q93WF1|PLY20_ARATH Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVQ6|PLY14_ARATH Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
224053451450 predicted protein [Populus trichocarpa] 0.807 0.651 0.782 1e-136
224075595452 predicted protein [Populus trichocarpa] 0.801 0.643 0.784 1e-135
170293773452 pectate lyase 1-27 [Populus tremula x Po 0.801 0.643 0.780 1e-135
429326628452 pectate lyase [Populus tomentosa] 0.801 0.643 0.777 1e-134
255554212376 Pectate lyase precursor, putative [Ricin 0.809 0.781 0.795 1e-133
290782380445 pectase lyase [Prunus persica] 0.798 0.651 0.750 1e-130
356575168448 PREDICTED: probable pectate lyase 15-lik 0.776 0.629 0.773 1e-130
449432456447 PREDICTED: probable pectate lyase 15-lik 0.809 0.657 0.759 1e-130
449529108444 PREDICTED: probable pectate lyase 15-lik 0.760 0.621 0.800 1e-129
121308298425 pectate lyase [Prunus persica] 0.754 0.644 0.779 1e-129
>gi|224053451|ref|XP_002297822.1| predicted protein [Populus trichocarpa] gi|118488789|gb|ABK96205.1| unknown [Populus trichocarpa] gi|222845080|gb|EEE82627.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/299 (78%), Positives = 267/299 (89%), Gaps = 6/299 (2%)

Query: 66  MAVTQRGICLCFAVVLMLFVGVLASVR--NEQDVSVSRKM---KAESSMNSTMAAKAEVV 120
           MAV+++  C+  AV+L+LFVGV+ +    N    +++R +   K +SS N+TMAA+++  
Sbjct: 1   MAVSRKWACMFSAVLLLLFVGVMPTTSGTNGGISALTRSVETEKVQSSSNTTMAARSQEE 60

Query: 121 AEALSKHAV-DNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKR 179
           A+AL++ AV DNP+E+ SMVEMS RNSTERR+LGYFSCGTGNPIDDCWRCD NW KNRKR
Sbjct: 61  ADALNEKAVADNPEEVVSMVEMSIRNSTERRRLGYFSCGTGNPIDDCWRCDPNWQKNRKR 120

Query: 180 LADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ 239
           LADCGIGFGRNAIGGRDGRFYVVTDP D+DPVNP+PGTLRHAVIQD PLWIVFKRDMVIQ
Sbjct: 121 LADCGIGFGRNAIGGRDGRFYVVTDPSDNDPVNPRPGTLRHAVIQDAPLWIVFKRDMVIQ 180

Query: 240 LKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTH 299
           LKQELI+NSFKTIDGRG NVHIANGGCITIQFVTNVIIHGLH+HDCKPTGNAMVRSSP+H
Sbjct: 181 LKQELIMNSFKTIDGRGVNVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSH 240

Query: 300 YGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCL 358
           YGWRT+ADGDA+SIFGSSHIW+DHNSLS+CADGLVDAVMGSTAIT+SNNH THHNEV L
Sbjct: 241 YGWRTMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVML 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075595|ref|XP_002304700.1| predicted protein [Populus trichocarpa] gi|118488323|gb|ABK95980.1| unknown [Populus trichocarpa] gi|222842132|gb|EEE79679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|170293773|gb|ACB12931.1| pectate lyase 1-27 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|429326628|gb|AFZ78654.1| pectate lyase [Populus tomentosa] Back     alignment and taxonomy information
>gi|255554212|ref|XP_002518146.1| Pectate lyase precursor, putative [Ricinus communis] gi|223542742|gb|EEF44279.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|290782380|gb|ADD62392.1| pectase lyase [Prunus persica] Back     alignment and taxonomy information
>gi|356575168|ref|XP_003555714.1| PREDICTED: probable pectate lyase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449432456|ref|XP_004134015.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] gi|449487510|ref|XP_004157662.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529108|ref|XP_004171543.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|121308298|dbj|BAF43573.1| pectate lyase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2005487 470 AT4G13710 [Arabidopsis thalian 0.732 0.565 0.770 8.2e-123
TAIR|locus:2197808 431 AT1G04680 [Arabidopsis thalian 0.644 0.542 0.890 2.5e-120
TAIR|locus:2077622 416 AT3G07010 [Arabidopsis thalian 0.652 0.569 0.831 1.1e-114
TAIR|locus:2154384 417 AT5G48900 [Arabidopsis thalian 0.652 0.568 0.810 2.1e-113
TAIR|locus:2093131 440 AT3G24670 [Arabidopsis thalian 0.749 0.618 0.732 8.7e-111
TAIR|locus:2093761 452 AT3G24230 [Arabidopsis thalian 0.774 0.621 0.674 4.1e-104
TAIR|locus:2161992 432 AT5G63180 [Arabidopsis thalian 0.661 0.555 0.701 3.2e-97
TAIR|locus:2121914 408 AT4G24780 [Arabidopsis thalian 0.633 0.563 0.705 2e-95
TAIR|locus:2008550 408 AT1G67750 [Arabidopsis thalian 0.628 0.558 0.7 3.4e-93
TAIR|locus:2086656 412 AT3G27400 [Arabidopsis thalian 0.650 0.572 0.634 7.7e-87
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1152 (410.6 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
 Identities = 211/274 (77%), Positives = 238/274 (86%)

Query:    93 NEQDVSVSRKMKAES--SMNSTMAAKAEVVAEALSK-HAV-DNPD----EIASMVEMSTR 144
             N   ++  RK+K E   S+NS+  A   +  E   + HAV D+PD    E+A +V+MS +
Sbjct:    46 NSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQ 105

Query:   145 NSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTD 204
             N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFY+VTD
Sbjct:   106 NRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTD 165

Query:   205 PRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANG 264
             P D+D VNPKPGTLRHAVIQ++PLWIVFKRDMVI+LKQELI+NSFKTID RG+NVHIANG
Sbjct:   166 PTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANG 225

Query:   265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHN 324
              CITIQF+TNVIIHGLH+HDCKPTGNAMVRSSP+H+GWRT+ADGDA+SIFGSSHIWIDHN
Sbjct:   226 ACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHN 285

Query:   325 SLSHCADGLVDAVMGSTAITISNNHMTHHNEVCL 358
             SLSHCADGLVDAVMGSTAIT+SNNH THHNEV L
Sbjct:   286 SLSHCADGLVDAVMGSTAITVSNNHFTHHNEVML 319
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940Q1PLY1_ARATH4, ., 2, ., 2, ., 20.76380.73550.6194yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010425
SubName- Full=Putative uncharacterized protein; (451 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVIII.1568.1
hypothetical protein (357 aa)
     •  0.899
gw1.XIV.2235.1
hypothetical protein (287 aa)
     •  0.899
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
     •  0.899
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
     •  0.899
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
     •  0.899
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
     •  0.899
fgenesh4_pg.C_scaffold_170000043
hypothetical protein (396 aa)
     •  0.899
fgenesh4_pg.C_LG_XIII000035
hypothetical protein (339 aa)
     •  0.899
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
     •  0.899
eugene3.00140717
pectinesterase family protein (EC-3.1.1.11) (561 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
smart00656190 smart00656, Amb_all, Amb_all domain 7e-42
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 4e-34
COG3866 345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 7e-13
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  144 bits (365), Expect = 7e-42
 Identities = 64/136 (47%), Positives = 79/136 (58%), Gaps = 27/136 (19%)

Query: 235 DMVIQLKQ--ELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAM 292
           D+ I L     +I+NS KTIDGRG+ V I  GG +TI+ V+NVII  L +HD KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKP----- 54

Query: 293 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA---------DGLVDAVMGSTAI 343
                  YG     DGDAISI GSS++WIDH SLS C          DGL+D   GST +
Sbjct: 55  ------VYGS----DGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 344 TISNNHMTHHNEVCLY 359
           TISNN+  +H +V L 
Sbjct: 105 TISNNYFHNHWKVMLL 120

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 99.97
smart00656190 Amb_all Amb_all domain. 99.96
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 98.07
PLN03003 456 Probable polygalacturonase At3g15720 97.98
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 97.96
PLN02218 431 polygalacturonase ADPG 97.67
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 97.66
PLN02793 443 Probable polygalacturonase 97.55
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.55
PLN02155 394 polygalacturonase 97.53
PLN03010 409 polygalacturonase 97.24
PLN02218 431 polygalacturonase ADPG 96.87
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.73
PLN03010 409 polygalacturonase 96.72
PLN02155 394 polygalacturonase 96.47
PLN03003 456 Probable polygalacturonase At3g15720 96.25
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 96.23
PLN02793 443 Probable polygalacturonase 96.12
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.12
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.01
PLN02197 588 pectinesterase 95.92
PLN02480 343 Probable pectinesterase 95.78
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.53
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 95.5
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 94.83
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.54
PLN02176 340 putative pectinesterase 93.77
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 93.59
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.52
PF05048 236 NosD: Periplasmic copper-binding protein (NosD); I 93.2
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.9
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 92.87
PLN02682 369 pectinesterase family protein 92.76
PLN02432 293 putative pectinesterase 92.56
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 91.84
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 91.51
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 91.41
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 91.01
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 90.55
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 90.55
PLN02301 548 pectinesterase/pectinesterase inhibitor 90.33
PLN02313 587 Pectinesterase/pectinesterase inhibitor 90.28
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 90.26
PLN02497 331 probable pectinesterase 90.12
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 89.92
PLN02314 586 pectinesterase 89.8
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 89.65
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 89.58
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 89.13
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 88.81
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 88.69
PLN02665 366 pectinesterase family protein 88.56
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 88.5
PLN02634 359 probable pectinesterase 88.31
PLN02304 379 probable pectinesterase 88.2
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 88.12
PLN02773 317 pectinesterase 88.0
PLN02916 502 pectinesterase family protein 87.81
PLN02671 359 pectinesterase 86.9
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 86.67
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 86.49
smart00656190 Amb_all Amb_all domain. 86.2
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 84.78
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 84.75
PRK10531 422 acyl-CoA thioesterase; Provisional 80.49
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 80.02
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-33  Score=271.28  Aligned_cols=146  Identities=32%  Similarity=0.434  Sum_probs=129.1

Q ss_pred             cCCCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEeeceEEEec------eeEEEcCCcEEEeeCCceEEee
Q 017972          190 NAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLK------QELIVNSFKTIDGRGANVHIAN  263 (363)
Q Consensus       190 ~TTGG~GG~iy~VTnlsD~d~vnp~pGTLR~AV~q~~Pr~IVF~~sGtI~Lk------~eL~V~SnKTIdGrGA~v~I~~  263 (363)
                      +||||.||.+++|++.+|          |..+++..+|..+++-+.|+|++.      .+|.+.|||||.|.|++++|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            899999999999999986          899999999994444444999987      567789999999999999997 


Q ss_pred             ceeEEEEccccEEEeceEEeecccCCCcceecCCCcCCCCcCCCCCeEEe-eCCceEEEEeeeeeC--------CCCcce
Q 017972          264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI-FGSSHIWIDHNSLSH--------CADGLV  334 (363)
Q Consensus       264 G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp~~~G~r~~sdgDaIsI-~gS~NVWIDHcSfS~--------~~DGLI  334 (363)
                      |+||+|+.+.|||||||+|++... ++           |    ..|+|+| .+++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~-~d-----------~----~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQ-GD-----------P----NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeecc-CC-----------C----CCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            679999999999999999998542 11           1    2599999 679999999999998        899999


Q ss_pred             EeeeCCccEEEEceeEcCCceeEEeecC
Q 017972          335 DAVMGSTAITISNNHMTHHNEVCLYSIF  362 (363)
Q Consensus       335 Dv~~gSt~ITISNn~F~~H~KvmLlG~~  362 (363)
                      |+++++++||||||+|++|+|.||+|.+
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~s  207 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSS  207 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccC
Confidence            9999999999999999999999999986

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1pxz_A 346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 3e-56
3zsc_A 340 Catalytic Function And Substrate Recognition Of The 2e-06
1vbl_A 416 Structure Of The Thermostable Pectate Lyase Pl 47 L 6e-06
1pcl_A 355 Unusual Structural Features In The Parallel Beta-He 8e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 142/205 (69%), Gaps = 13/205 (6%)
Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTS-TDDNPVNPTPGTLRY 60
Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 280 LHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGL 333
           LH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 334 VDAVMGSTAITISNNHMTHHNEVCL 358
           +D  +GST ITISNNH  +H++V L
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVML 200
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 2e-86
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 9e-61
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 3e-49
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 5e-47
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 1e-42
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 1e-39
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 6e-38
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 3e-36
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-35
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 2e-29
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 5e-28
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 2e-05
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-05
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 6e-05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-04
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-04
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  263 bits (674), Expect = 2e-86
 Identities = 103/200 (51%), Positives = 138/200 (69%), Gaps = 3/200 (1%)

Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 280 LHVHDCKPTGNAMVRSSPTHYGW-RTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338
           LH+H C  +    V  S +         DGDAI++   ++ WIDHNSLS C+DGL+D  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 339 GSTAITISNNHMTHHNEVCL 358
           GST ITISNNH  +H++V L
Sbjct: 181 GSTGITISNNHFFNHHKVML 200
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 97.96
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 97.96
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.95
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.93
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.9
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 97.87
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.84
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.83
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.79
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.77
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.77
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.63
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.61
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.61
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 97.58
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.56
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 97.41
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.29
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 97.27
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.01
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.89
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 96.84
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.56
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 96.45
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 96.32
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.3
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.25
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.2
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.18
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 96.12
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 96.05
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 95.94
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 95.91
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 95.69
2inu_A 410 Insulin fructotransferase; right-handed parallel b 94.88
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.87
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 94.72
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.48
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 94.4
2inu_A 410 Insulin fructotransferase; right-handed parallel b 94.06
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 93.3
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 92.62
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 92.35
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 90.94
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 90.62
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 90.01
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 89.09
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 88.61
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 86.76
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 86.37
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 85.9
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 80.15
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=5e-68  Score=516.28  Aligned_cols=202  Identities=50%  Similarity=0.918  Sum_probs=195.0

Q ss_pred             CCCCcceeeccCccccCccchhhcccccCCcCCCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEeeceEEE
Q 017972          160 GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ  239 (363)
Q Consensus       160 ~NpiD~cWRcd~nW~~~Rq~LA~cA~GFG~~TTGG~GG~iy~VTnlsD~d~vnp~pGTLR~AV~q~~Pr~IVF~~sGtI~  239 (363)
                      +||||+||||||+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|+++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 6899999999999999999999999999999


Q ss_pred             eceeEEEcCCcEEEeeCCceEEee-ceeEEEEccccEEEeceEEeecccCCCcce-ecCCCcCCCCcCCCCCeEEeeCCc
Q 017972          240 LKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHGLHVHDCKPTGNAMV-RSSPTHYGWRTVADGDAISIFGSS  317 (363)
Q Consensus       240 Lk~eL~V~SnKTIdGrGA~v~I~~-G~gItI~~asNVIIrNL~I~d~~p~~~~~i-R~sp~~~G~r~~sdgDaIsI~gS~  317 (363)
                      |+++|.|+|||||+|+|++++|.+ |+||+|++++|||||||+|+++.|.+++.| |++|.++|++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999986 689999999999999999999999888777 999999999888999999999999


Q ss_pred             eEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEeecC
Q 017972          318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIF  362 (363)
Q Consensus       318 NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~~  362 (363)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~s  204 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHD  204 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCC
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCC
Confidence            999999999999999999999999999999999999999999986
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1pxza_ 346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-87
d1pe9a_ 361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 7e-42
d1qcxa_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-36
d1idka_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 8e-35
d1bn8a_ 399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-33
d1o88a_ 353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-15
d1ia5a_ 339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  266 bits (680), Expect = 1e-87
 Identities = 102/200 (51%), Positives = 136/200 (68%), Gaps = 3/200 (1%)

Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ N G C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 280 LHVHDCKPTGNAMVRSSP-THYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338
           LH+H C  +    V  S           DGDAI++   ++ WIDHNSLS C+DGL+D  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 339 GSTAITISNNHMTHHNEVCL 358
           GST ITISNNH  +H++V L
Sbjct: 181 GSTGITISNNHFFNHHKVML 200
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 99.89
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.02
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 97.66
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.49
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.32
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.31
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.27
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.9
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 96.7
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.42
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.25
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 96.24
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.15
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 95.55
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 94.74
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 94.7
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 94.58
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 92.9
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.44
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 91.23
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 90.74
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 87.61
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 87.4
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 80.25
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 80.2
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=6.3e-68  Score=511.24  Aligned_cols=202  Identities=50%  Similarity=0.914  Sum_probs=184.5

Q ss_pred             CCCCcceeeccCccccCccchhhcccccCCcCCCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEeeceEEE
Q 017972          160 GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ  239 (363)
Q Consensus       160 ~NpiD~cWRcd~nW~~~Rq~LA~cA~GFG~~TTGG~GG~iy~VTnlsD~d~vnp~pGTLR~AV~q~~Pr~IVF~~sGtI~  239 (363)
                      .||||+||||||||+.+||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999977 5899999999999999999999999999999


Q ss_pred             eceeEEEcCCcEEEeeCCceEEee-ceeEEEEccccEEEeceEEeecccCCCcceecCC-CcCCCCcCCCCCeEEeeCCc
Q 017972          240 LKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSP-THYGWRTVADGDAISIFGSS  317 (363)
Q Consensus       240 Lk~eL~V~SnKTIdGrGA~v~I~~-G~gItI~~asNVIIrNL~I~d~~p~~~~~iR~sp-~~~G~r~~sdgDaIsI~gS~  317 (363)
                      |+++|.|+|||||+|||++++|.. |.+|++++++|||||||+|+++.+.....++..+ .+.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999998874 5679999999999999999998776554443322 23333445789999999999


Q ss_pred             eEEEEeeeeeCCCCcceEeeeCCccEEEEceeEcCCceeEEeecC
Q 017972          318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLYSIF  362 (363)
Q Consensus       318 NVWIDHcSfS~~~DGLIDv~~gSt~ITISNn~F~~H~KvmLlG~~  362 (363)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|+.
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~  204 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHD  204 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCC
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCC
Confidence            999999999999999999999999999999999999999999975
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure