Citrus Sinensis ID: 018001


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD
ccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEEccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccEEEEEEcHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHcccccccccHHHHHccccccccHHHHHHHHHHcccccccEEEEEccEEcccccccHHHHHHcccccccccccccccccccccccccccHHHEEEEEcccEEEEcccccHHHHHHHcccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccc
ccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEccccHHHccccccHHHHHHEEHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccHHHHHHHHHHccccccEEEEEEEcEEccccHHHHHHHHHccccccHHHcccHHHHHHccccHHHHHHHHHHEEccccEEEEccccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccEccccccHcccccc
mvkelpnklqsldleaigsvvtdvdipkeskpsfylkniipillRNGVVHLLGfgnrlafdpipfqLQRLRCRcnfhalqfaPKIQETGALLLRRLRkheghsgpldhylvgpyadsimkekrgqsaKASRYLAIHLRFEIDMVAHSLcefgggeeeRQELEKYREIHFPALAHlkkttklpspaeirseglcpltpEEAVLMLAALGFNRKTHVFVAGaqiyggtrrlgalnslypylvtkenllsatelepfknfssQLAALDFIGCTaanafamtdsgsqlSSLVSGYriyygggkmptirpnKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKhiqsrskgrsvyryprckecmcptd
mvkelpnklqsldleaigsvvtdvdipkeskpsfYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEghsgpldhylvGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALahlkkttklpspaEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAmtdsgsqlSSLVSGYRIYYGggkmptirpnKRRLAAIFVKNSTIEWKVFEQRVRKavrqtkhiqsrskgrsvyryprckecmcptd
MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCefgggeeerqelekyreIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD
*************LEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSI**********ASRYLAIHLRFEIDMVAHSLCEFGGG******LEKYREIHFPALAHLKK************EGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVR*************VYRYPRCKE******
MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEG***PL**YLVGPYAD**********AKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFE************************YPRCKECMCPT*
MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMK*********SRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVR*****************VYRYPRCKECMCPTD
MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPT*
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MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.792 0.552 0.291 2e-30
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 53/340 (15%)

Query: 27  PKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQ 86
           P+++   +YL   +  +  +  ++L  F +RLA +    + QRLRCR N+HAL+F P I 
Sbjct: 181 PRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIM 240

Query: 87  ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAH 146
           +    ++ +LR  +GH                             +++IHLRFE+DM+A 
Sbjct: 241 KLSESIVDKLRS-QGH-----------------------------FMSIHLRFEMDMLAF 270

Query: 147 SLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAA 206
           + C      EE++ L KYR+ +F          K     E R+ G CPLTPEE  L+L A
Sbjct: 271 AGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAIGKCPLTPEEVGLILRA 322

Query: 207 LGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AAL 264
           + F+  T +++A  +++GG + +    +L+P L   +N  S    E     S  L  +A+
Sbjct: 323 MRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAV 379

Query: 265 DFIGCTAANAFAMT-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWK 323
           D++ C  ++ F  T D  S  ++ + G+R+YYG     TIRP+++ LA IF+     +  
Sbjct: 380 DYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKALAPIFIAREKGKRA 437

Query: 324 VFEQRVRKAVRQTK----HIQSRSKGRSVYRYPRCKECMC 359
            FE+ VR+ + +T     H +   +      +P   EC C
Sbjct: 438 GFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWP---ECFC 474





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
224113753 465 predicted protein [Populus trichocarpa] 1.0 0.778 0.817 1e-176
224117960 467 predicted protein [Populus trichocarpa] 1.0 0.775 0.820 1e-176
356520091 583 PREDICTED: DUF246 domain-containing prot 1.0 0.620 0.792 1e-175
297741763 717 unnamed protein product [Vitis vinifera] 1.0 0.504 0.795 1e-173
359494826 617 PREDICTED: DUF246 domain-containing prot 1.0 0.586 0.795 1e-173
356564474 579 PREDICTED: DUF246 domain-containing prot 1.0 0.625 0.781 1e-173
255554775 642 conserved hypothetical protein [Ricinus 1.0 0.563 0.802 1e-167
357480375 620 hypothetical protein MTR_4g132590 [Medic 0.988 0.577 0.787 1e-166
449513539 672 PREDICTED: DUF246 domain-containing prot 0.997 0.537 0.783 1e-164
449455459 672 PREDICTED: DUF246 domain-containing prot 0.997 0.537 0.781 1e-163
>gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/362 (81%), Positives = 326/362 (90%)

Query: 1   MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAF 60
           +VKELP +LQSLDLEAIGSVVTD DI KESKPSFYLKNI+PILL+N VVH +GFGNRLAF
Sbjct: 104 IVKELPKELQSLDLEAIGSVVTDADIGKESKPSFYLKNILPILLKNRVVHFVGFGNRLAF 163

Query: 61  DPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMK 120
           DPIPFQLQ LRCRCNFHALQF+PKIQET ALL++RLRK+  HSGPLDHYL+GPYA+  ++
Sbjct: 164 DPIPFQLQTLRCRCNFHALQFSPKIQETVALLIQRLRKNAAHSGPLDHYLIGPYAEKNLQ 223

Query: 121 EKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTK 180
           EK G + KASRYLA+HLRFEIDMVAHSLCE+GGGEEER+ELE YREIHFPAL  LKKT K
Sbjct: 224 EKVGHAVKASRYLALHLRFEIDMVAHSLCEYGGGEEERKELEAYREIHFPALTLLKKTNK 283

Query: 181 LPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLV 240
           LPSPA +R EGLCPLTPEEAVLMLAALGF+RKTH+F+AGA IYGG  RL AL SLYP LV
Sbjct: 284 LPSPAMLREEGLCPLTPEEAVLMLAALGFSRKTHIFIAGANIYGGRSRLTALTSLYPNLV 343

Query: 241 TKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKM 300
           TKE LLSATEL+PF NFSSQLAALDFI CTA++AFAMTDSGSQLSSLVSG+RIYYGGGKM
Sbjct: 344 TKEKLLSATELKPFMNFSSQLAALDFIACTASDAFAMTDSGSQLSSLVSGFRIYYGGGKM 403

Query: 301 PTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCP 360
           PTIRPNKRRLA IF KN++IEWK+FEQRVRKAVRQTKH+  R K RSVYRYPRCKECMC 
Sbjct: 404 PTIRPNKRRLADIFRKNNSIEWKIFEQRVRKAVRQTKHVLQRPKARSVYRYPRCKECMCL 463

Query: 361 TD 362
           T+
Sbjct: 464 TE 465




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2027129652 AT1G62330 [Arabidopsis thalian 1.0 0.555 0.721 6.3e-140
TAIR|locus:2008935590 AT1G11990 [Arabidopsis thalian 0.660 0.405 0.698 1e-124
TAIR|locus:2029984611 AT1G29200 [Arabidopsis thalian 0.980 0.581 0.540 1.4e-101
TAIR|locus:2121793551 RHS17 "root hair specific 17" 0.533 0.350 0.406 1.1e-50
TAIR|locus:2049527567 AT2G01480 [Arabidopsis thalian 0.657 0.419 0.353 6.8e-49
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.618 0.408 0.357 2.2e-46
TAIR|locus:2006852562 AT1G14970 [Arabidopsis thalian 0.660 0.425 0.348 4.9e-46
TAIR|locus:2121909519 AT4G24530 [Arabidopsis thalian 0.947 0.660 0.325 9.1e-45
TAIR|locus:2168297504 AT5G65470 [Arabidopsis thalian 0.953 0.684 0.316 1.2e-44
TAIR|locus:2014666568 AT1G35510 [Arabidopsis thalian 0.618 0.394 0.341 1.8e-44
TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
 Identities = 262/363 (72%), Positives = 297/363 (81%)

Query:     1 MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAF 60
             +VK+LP +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAF
Sbjct:   290 IVKKLPKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAF 349

Query:    61 DPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIM 119
             DPIPF+LQRLRCRCNFHAL F PKIQETGA+L+RRLR    H  P+D YLVGP +A  I+
Sbjct:   350 DPIPFELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFIL 409

Query:   120 KEKRGQSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTT 179
              +K G   KAS+YLA+HLRFEIDMVAHSLC                  HFP LA+L KT 
Sbjct:   410 DKKAGPLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQ 469

Query:   180 KLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL 239
             K+PSP ++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP L
Sbjct:   470 KMPSPDDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNL 529

Query:   240 VTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299
             VTKEN+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GK
Sbjct:   530 VTKENVLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGK 589

Query:   300 MPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMC 359
             MPTIRPNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+  R  GRSVYRYPRCKECMC
Sbjct:   590 MPTIRPNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMC 649

Query:   360 PTD 362
               D
Sbjct:   650 NED 652




GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0007020 "microtubule nucleation" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.XI.1485.1
hypothetical protein (462 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 4e-93
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 2e-71
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 3e-05
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  279 bits (717), Expect = 4e-93
 Identities = 113/298 (37%), Positives = 152/298 (51%), Gaps = 76/298 (25%)

Query: 2   VKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFD 61
           VK+LP +L S   E     +T   +P  S PS+YL+ ++P+L ++GV+ L  F +RLA D
Sbjct: 68  VKKLPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLAND 122

Query: 62  PIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKE 121
            +P ++QRLRCR NFHAL+F P+I+E G  L+ RLR+  G                    
Sbjct: 123 LLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG-------------------- 162

Query: 122 KRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKL 181
                     +LA+HLRFE DM+A S C                                
Sbjct: 163 ---------PFLALHLRFEKDMLAFSGC-------------------------------- 181

Query: 182 PSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVT 241
                    G CPLTPEE  L+L ALGF R T +++A  +IYGG RRL  L S++P L T
Sbjct: 182 ---------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYT 232

Query: 242 KENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299
           KE L +A EL PF   SS+LAALD+I C  ++ F  T  G   +  V+G+R Y G  K
Sbjct: 233 KETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRYLGHRK 289


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 87.26
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=8.8e-40  Score=315.75  Aligned_cols=219  Identities=41%  Similarity=0.625  Sum_probs=151.5

Q ss_pred             CCChhHHHhhhHHHHHhc------CeEEEeccCCCCCCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCC
Q 018001           29 ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGH  102 (362)
Q Consensus        29 ~s~~~~Y~~~ilP~L~~~------~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~~  102 (362)
                      ++.+.+|+++++|.+.++      +|+.|.++...+..+..+.++||        +|+|+++|+++|+++|++++..   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~---  193 (351)
T PF10250_consen  125 WSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--------YLRFSPEIRELADKFIKRLLAG---  193 (351)
T ss_dssp             E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------G--B-HHHHHHHHHHHHHH------
T ss_pred             cCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------EEecCHHHHHHHHHHHHHhhcc---
Confidence            788999999999999987      99999999999998888999988        9999999999999999999822   


Q ss_pred             CCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhHhhccCCCCCChHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 018001          103 SGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLP  182 (362)
Q Consensus       103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~yiAlHLRfE~DMlA~sgC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~i  182 (362)
                                                .++|||+|||+|+||  +++|.+++   +...|+.+|..          ..+.+
T Consensus       194 --------------------------~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~----------~~~~~  232 (351)
T PF10250_consen  194 --------------------------GGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW----------GKKSI  232 (351)
T ss_dssp             ---------------------------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-----------GGGT
T ss_pred             --------------------------cCceEEEeecccCch--HhhcccCC---chHHHHHhHhh----------ccccc
Confidence                                      248999999999999  89999954   77788888853          12234


Q ss_pred             ChhhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCcccccccCCccccccccccccccc
Q 018001          183 SPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLA  262 (362)
Q Consensus       183 ~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~eEL~~f~~~ss~~A  262 (362)
                      .+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+.+|+++|.+  +++|
T Consensus       233 ~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a  310 (351)
T PF10250_consen  233 NPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLA  310 (351)
T ss_dssp             T-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S--H
T ss_pred             cchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchh
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999996  9999


Q ss_pred             hhhheeeccCceeeecCCCCchhhhhhhccccccCCCCcc
Q 018001          263 ALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT  302 (362)
Q Consensus       263 ALDy~Vc~~SDvFv~t~~G~nma~~V~GhR~y~G~~~~kT  302 (362)
                      +||++||++||+||+|. ||+|+..|+++|.|.|..++||
T Consensus       311 ~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~  349 (351)
T PF10250_consen  311 MVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS  349 (351)
T ss_dssp             HHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred             HHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence            99999999999999997 7789999999999999876454



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 55/371 (14%), Positives = 102/371 (27%), Gaps = 110/371 (29%)

Query: 1   MVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKPSFYLKNIIPILLRNGVV 49
              +L   L  L              G + V  DV             +       +  +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-----------CLSYKVQCKMDFKI 184

Query: 50  HLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQETGALLLRRLRKHEGHS 103
             L   N  + + +   LQ+L  +   N+ +             +    LRRL K + + 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 104 GPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIHLRFEIDMVAH-SLCEFG 152
             L   LV     ++   +  ++  A          +R+  +          H SL    
Sbjct: 245 NCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 153 GGEEERQELE---KYREIHFPALAHLKKTTKLPSP------AEIRSEGLC---------- 193
                 +      KY +     L     TT   +P      AE   +GL           
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 194 ------------PLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVT 241
                        L P E   M   L       VF   A I         L+ ++  ++ 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPTIL-----LSLIWFDVIK 401

Query: 242 KENLLSATELEPF-------KNFSSQLAALDF-IGCTAANAFAMTDSGSQLSSLVSGYRI 293
            + ++   +L  +       K  +  + ++   +     N +A+        S+V  Y I
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR------SIVDHYNI 455

Query: 294 ---YYGGGKMP 301
              +     +P
Sbjct: 456 PKTFDSDDLIP 466


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 98.66
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 98.44
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 94.24
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 84.65
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=98.66  E-value=2.3e-08  Score=98.91  Aligned_cols=171  Identities=23%  Similarity=0.223  Sum_probs=102.9

Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhHhhccCCCCCChH
Q 018001           77 HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEE  156 (362)
Q Consensus        77 ~ALrF~p~I~~lg~~LV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~yiAlHLRfE~DMlA~sgC~~g~~~~  156 (362)
                      ..|+|++.|.+.|+..++..-.....   -+++..|.  +-...........+++|+|+|+|-+.=+.+...|.-.    
T Consensus       217 r~l~~s~~l~~~a~~fi~~~L~~~~~---~~h~r~~~--dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----  287 (408)
T 4ap5_A          217 RSMVFARHLREVGDEFRSRHLNSTDD---ADRIPFQE--DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----  287 (408)
T ss_dssp             HTCCBCHHHHHHHHHHHHHHHCCCTT---TTTCCCCS--SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCcccc---eeecccch--hHhhhhcccccccCCCccccccccccchhhhhccCCC----
Confidence            47999999999999998876432100   01111110  0001111223344689999999976323333333311    


Q ss_pred             HHHHHHHHHHhhhhhhhhcccCCCCCChhhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhC
Q 018001          157 ERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLY  236 (362)
Q Consensus       157 E~~eL~~~R~~~~~~~~~~~~~~~~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~F  236 (362)
                      ......+                                    +.-+++..   +-+.||||+-+   .+..+.-|++.+
T Consensus       288 ~~~~~~~------------------------------------i~~~~~~~---~~~~VyiATD~---~~~~~~~l~~~~  325 (408)
T 4ap5_A          288 LEGAVRK------------------------------------IRSLMKTH---RLDKVFVATDA---VRKEYEELKKLL  325 (408)
T ss_dssp             HHHHHHH------------------------------------HHHHHHHH---TCSCEEEEECC---CHHHHHHHHHHC
T ss_pred             HHHHHHH------------------------------------HHHHHHhc---CCCEEEEeCCC---chhHHHHHHHhC
Confidence            1111111                                    11122222   23469999864   344577899999


Q ss_pred             CCcccccccCCccccccccccccccchhhheeeccCceeeecCCCCchhhhhhhccccccCCCCccc
Q 018001          237 PYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTI  303 (362)
Q Consensus       237 Pnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc~~SDvFv~t~~G~nma~~V~GhR~y~G~~~~kTi  303 (362)
                      |.++.-..  ..+++..+.  ....|.||-+||.+||+||+|... +|+..|.=.|-+.|+....|.
T Consensus       326 ~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~~~~t~  387 (408)
T 4ap5_A          326 PEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVS-TFSFRIHEEREILGLDPKTTY  387 (408)
T ss_dssp             TTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBCGGGTS
T ss_pred             CCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCCCCccc
Confidence            98764322  234444444  445788999999999999998744 799999999999998754443



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00