Citrus Sinensis ID: 018007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEccccHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccHccHHccccccccccHHHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mdsstnhnyhqqsnpglsrfnsaptaLLVNFTdslesggvnkssfESERLISRFMnsggdnsnnssfqefevkspvsygnsqqscsglpphyprqssamdhnsydlfldqssrvksvnsnlvrqssspaglFAKLsaqngyastkevgsyggvngsngdlspstkrlksqisipsripsslgmlsrvsevesdgpthgkvrngngdtqfystgfsygswndsshfteSFTDMkreqgngelgnsVHMLSHhlslpktsAEMAAVEKFLqfqdsvpckirakrgcathprsIAERVRRTRISERMRKLQELvpnmdkqtntADMLDLAVDYIKDLQNQFKTLsdnrakckcskiqkpvenqiv
Flexible Loop (DISEMBL)
mdsstnhnyhqqsnpglsrfnSAPTALLVNFtdslesggvnkSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLksqisipsripsslgmlSRVSEVEsdgpthgkvrngngdTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKirakrgcathprsiaervrrtrISERMRklqelvpnmdkqtntADMLDLAVDYIKDLQNQFKTlsdnrakckcskiqkpvenqiv
Low Complexity Region (SEG)
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMnsggdnsnnssFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEvgsyggvngsngDLSPSTKRLKsqisipsripssLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Disordered region (IsUnstruct)
**************************LLV***********************************************************************************************************************************************************************************FYSTGFSYGSW******************************************AAVEKFLQFQDSVPCKIRAKRGCAT**********************************ADMLDLAVDYIKDLQNQFKTL*********************
Disordered Region (DISOPRED)
*********************SAPTALLVNFTD***************************************************************************************************************************************************************************************************************************************************************************SERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT**********************
Disordered Region (DISEMBL)
**************PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVK***************PPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLS***********HGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Disordered Region (DISPRO)
*************NPGLSRFNSAPTALLVNFTDSLES**********************************************************************************************FAKLSAQNGYASTKEVGSY***************************************************************************************************************AAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q66GR3	359	Transcription factor bHLH	yes	no	0.889	0.896	0.506	2e-83
Q9C690	379	Transcription factor bHLH	no	no	0.886	0.846	0.377	4e-50
Q8H102	362	Transcription factor bHLH	no	no	0.883	0.883	0.360	4e-38
Q9C8P8	259	Transcription factor bHLH	no	no	0.240	0.335	0.703	1e-33
Q9ZW81	297	Transcription factor bHLH	no	no	0.566	0.690	0.423	2e-30
Q9M0R0	262	Transcription factor bHLH	no	no	0.312	0.431	0.527	2e-29
Q9ZUG9	350	Transcription factor bHLH	no	no	0.190	0.197	0.628	1e-16
Q8S3D5	310	Transcription factor bHLH	no	no	0.187	0.219	0.623	3e-16
Q9LSQ3	297	Transcription factor bHLH	no	no	0.187	0.228	0.579	3e-15
Q8GY61	335	Transcription factor bHLH	no	no	0.212	0.229	0.518	2e-13

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/389 (50%), Positives = 240/389 (61%), Gaps = 67/389 (17%)

Query: 1   MDSSTNHNYHQQSNP---GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNS 57
           MDS+ NH Y    NP   GL RF SAP+++L  F D       +K  F+S+RL+SRF+ S
Sbjct: 1   MDSN-NHLY--DPNPTGSGLLRFRSAPSSVLAAFVDD------DKIGFDSDRLLSRFVTS 51

Query: 58  GGDNSNNSSFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQSSA-MDH 101
            G N +  S  +FE KSPVS  N+  S +               GLPPHYPRQS   M+ 
Sbjct: 52  NGVNGDLGS-PKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSKGIMNS 110

Query: 102 NSYDLFLD-QSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDL 160
              D FL   +   K V SNL+RQSSSPAG+F  LS QNGY S + + +Y        + 
Sbjct: 111 VGLDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNY-----EEDEE 165

Query: 161 SPSTKR-LKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSW 219
           SPS    L+   S+ SR PSSLGMLS++ E+  +                  T F Y  W
Sbjct: 166 SPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPE------------------TNFPYSHW 207

Query: 220 NDSSHFTESFTDMKREQ----------GNGELGNSVHMLSHHLSLPK---TSAEMAAVEK 266
           ND S F ++ + +KRE            NGE GN + +LSHHLSLPK   T+++M +V+K
Sbjct: 208 NDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDK 267

Query: 267 FLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDL 326
           +LQ QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DMLDL
Sbjct: 268 YLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDL 327

Query: 327 AVDYIKDLQNQFKTLSDNRAKCKCSKIQK 355
           AVDYIKDLQ Q+K L+DNRA CKC   +K
Sbjct: 328 AVDYIKDLQRQYKILNDNRANCKCMNKEK 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 207/389 (53%), Gaps = 68/389 (17%)

Query: 6   NHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNS 65
           +H + +  N GL R+ SAP++   +F +S+E      +S E+ER++S F+ +   + N  
Sbjct: 14  DHQHQRPRNSGLIRYQSAPSSYFSSFGESIEEFLDRPTSPETERILSGFLQTTDTSDNVD 73

Query: 66  SF------------QEFEVKS-------PVSYGNSQQ----SCSGLPPHYPRQS----SA 98
           SF            +  EVK+       PV+   +      S  G     P  S    ++
Sbjct: 74  SFLHHTFNSDGTEKKPPEVKTEDEDAEIPVTATATAMEVVVSGDGEISVNPEVSIGYVAS 133

Query: 99  MDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYAST-KEVGSYGGVN--- 154
           +  N      D  + V    +NL R +SSPAGLF+ +  +  YA+  K +G +GG N   
Sbjct: 134 VSRNKRPREKDDRTPV----NNLARHNSSPAGLFSSIDVETAYAAVMKSMGGFGGSNVMS 189

Query: 155 GSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGD---TQFYS 211
            SN + S  T R K        +P +   +S +SEV+        V+ G       +  S
Sbjct: 190 TSNTEASSLTPRSK-------LLPPTSRAMSPISEVD--------VKPGFSSRLPPRTLS 234

Query: 212 TGFSYGSWNDSSHFTESFTDMKREQGNG---------ELGNSVHMLSHHLSLPKTSAEMA 262
            GF+    N+ S  +   T + R Q  G         +  +    L+HH+SLPK+   ++
Sbjct: 235 GGFNRSFGNEGSA-SSKLTALARTQSGGLDQYKTKDEDSASRRPPLAHHMSLPKS---LS 290

Query: 263 AVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD 322
            +E+ L   DS+PCKIRAKRGCATHPRSIAERVRRT+ISERMRKLQ+LVPNMD QTNTAD
Sbjct: 291 DIEQLLS--DSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTAD 348

Query: 323 MLDLAVDYIKDLQNQFKTLSDNRAKCKCS 351
           MLDLAV YIKDLQ Q K L ++RA+C+CS
Sbjct: 349 MLDLAVQYIKDLQEQVKALEESRARCRCS 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 187/361 (51%), Gaps = 41/361 (11%)

Query: 16  GLSRFNSAPTALLVNFTDSLESGGV-NKSSF-----ESERLISRFMNSGGDNSNNSSFQE 69
           GL R+ SAP + L +  D +  GG  N   F      S+  I  F     D+S   S + 
Sbjct: 22  GLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGNFFTGAADSS---SLRS 78

Query: 70  FEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVN---------SN 120
                 V+  +  Q   G   +           SY  F + S + KS +          +
Sbjct: 79  DSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQHKSNDIGGGNSSGSYS 138

Query: 121 LVRQSSSPAGLFAKLSA-QNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPS 179
           L RQ SSPA  F  L++ +N ++  +    Y    GSNG    S  RLKSQ+S  +    
Sbjct: 139 LARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHS--RLKSQLSFTNH--- 193

Query: 180 SLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYG---SWNDSSHFTESFTDMKREQ 236
               L+R++EV ++ P H    +G+G + F +  F      SW+D S  +  FT  +  +
Sbjct: 194 --DSLARINEV-NETPVH----DGSGHS-FSAASFGAATTDSWDDGSG-SIGFTVTRPSK 244

Query: 237 GNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQF-QDSVPCKIRAKRGCATHPRSIAERV 295
            + ++ +    L    SLP  ++ M  ++ F+Q  +DSVPCKIRAKRGCATHPRSIAER 
Sbjct: 245 RSKDMDSG---LFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERE 300

Query: 296 RRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQK 355
           RRTRIS +++KLQ+LVPNMDKQT+ +DMLDLAV +IK LQ+Q + L  ++  C C   +K
Sbjct: 301 RRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEK 360

Query: 356 P 356
           P
Sbjct: 361 P 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 79/91 (86%), Gaps = 4/91 (4%)

Query: 270 FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVD 329
           F+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+R+LQELVPNMDKQTNTADML+ AV+
Sbjct: 173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232

Query: 330 YIKDLQNQFKTLSDNRAKCKCSKIQKPVENQ 360
           Y+K LQ+Q + L++ + +CKC    KP E Q
Sbjct: 233 YVKALQSQIQELTEQQKRCKC----KPKEEQ 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 129/229 (56%), Gaps = 24/229 (10%)

Query: 121 LVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPS- 179
           L R  SSPAG + +    +   +   +G   G  G  G+  PS  RLKS++   S   S 
Sbjct: 82  LFRHRSSPAGFYDQHLPTDPNGTGFSLGRPNGGYGGGGEQGPS--RLKSELRFSSGSSSH 139

Query: 180 -SLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGS-----W-NDSSHFTESFTDM 232
                L R+SEVE+        RNG       S+  S+G+     W N SSH + +    
Sbjct: 140 QEHNSLPRISEVEAAA----AARNG-----VASSSMSFGNNRTNNWDNSSSHISFTIDQP 190

Query: 233 KREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQF-QDSVPCKIRAKRGCATHPRSI 291
            +   N +       L    S+P+T+ EMA +E  +   +DSVPC+ RAKRG ATHPRSI
Sbjct: 191 GKRSKNSDF----FTLETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSI 246

Query: 292 AERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 340
           AER RRTRIS +++KLQELVPNMDKQT+ ADMLDLAV++IK LQ+Q + 
Sbjct: 247 AERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 16/129 (12%)

Query: 222 SSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAK 281
           S  FT   + MK EQ +G++   V  +S              +E  ++  DSV  ++RAK
Sbjct: 144 SPEFT---SQMKGEQSSGQVPTGVSSMSD-----------MNMENLME--DSVAFRVRAK 187

Query: 282 RGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTL 341
           RGCATHPRSIAERVRRTRIS+R+RKLQELVPNMDKQTNTADML+ AV+Y+K LQ Q + L
Sbjct: 188 RGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQEL 247

Query: 342 SDNRAKCKC 350
           ++ + +C C
Sbjct: 248 TEEQKRCTC 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 276 CKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQ 335
            KIRA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 336 NQFKTLSDNR 345
            Q K LS +R
Sbjct: 195 LQVKVLSMSR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 277 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336
           K+RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 337 QFKTLSDNR 345
           Q K LS +R
Sbjct: 188 QVKVLSMSR 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 277 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336
           ++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  ++Y++ LQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 337 QFKTLSDNR 345
           Q K LS +R
Sbjct: 157 QVKVLSMSR 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 264 VEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADM 323
           V K L+  D +   +RA+RG AT   SIAERVRR +ISERM+ LQ+LVP  DK T  A M
Sbjct: 160 VTKELEKTDYI--HVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGM 217

Query: 324 LDLAVDYIKDLQNQFKTLS 342
           LD  ++Y++ LQ Q + LS
Sbjct: 218 LDEIINYVQSLQRQIEFLS 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
255583282	355	DNA binding protein, putative [Ricinus c	0.875	0.892	0.557	1e-106
225441696	405	PREDICTED: transcription factor bHLH130-	0.922	0.824	0.582	1e-106
147789805	394	hypothetical protein VITISV_008845 [Viti	0.922	0.847	0.582	1e-106
224120208	355	predicted protein [Populus trichocarpa]	0.856	0.873	0.570	1e-102
356500459	378	PREDICTED: transcription factor bHLH130-	0.914	0.875	0.528	1e-96
449437603	366	PREDICTED: transcription factor bHLH130-	0.930	0.920	0.542	1e-93
297739719	280	unnamed protein product [Vitis vinifera]	0.712	0.921	0.62	1e-89
356537351	384	PREDICTED: transcription factor bHLH130-	0.872	0.822	0.511	6e-86
312282767	363	unnamed protein product [Thellungiella h	0.903	0.900	0.503	2e-85
356504823	387	PREDICTED: transcription factor bHLH130-	0.980	0.917	0.505	3e-82

>gi|255583282|ref|XP_002532405.1| DNA binding protein, putative [Ricinus communis] gi|223527901|gb|EEF29990.1| DNA binding protein, putative [Ricinus communis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/400 (55%), Positives = 255/400 (63%), Gaps = 83/400 (20%)

Query: 1   MDSSTNHNYHQQSN----PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMN 56
           MDSS+N N+H Q+N     GL RF SAP++ L NF D+                      
Sbjct: 1   MDSSSNPNFHHQNNQQPSSGLLRFRSAPSSFLANFNDN---------------------- 38

Query: 57  SGGDNSNNS--SFQEFEVKSPV---------SYGNSQQSCSGLPPHYPRQSSAMDH---- 101
             G  SNNS   FQE E KS V         +Y NS QS SGLPPHYPR +++       
Sbjct: 39  --GVTSNNSVMGFQELEDKSAVRVREVGAVVNYANSTQSYSGLPPHYPRHTNSSAATSSS 96

Query: 102 ---------NSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGG 152
                     S  +        K V+SNL RQSSSPAGLF  LS Q GYA+ K +G+Y  
Sbjct: 97  AMDSSFGLIGSMAMGGHHEQEAKRVDSNLARQSSSPAGLFGNLSVQTGYATMKGMGNYAR 156

Query: 153 VNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYST 212
           VNG++G++SP   RLKSQ+S PSRIPSSL MLS++SE+ S+                 S 
Sbjct: 157 VNGTSGEVSP---RLKSQLSFPSRIPSSLSMLSQISEIGSE-----------------SI 196

Query: 213 GFSYGSWNDSSHFTESFTDMKREQG----------NGELGNSVHMLSHHLSLPKTSAEMA 262
           GF YGSWNDS  F+E+F  MKR+            NGELGN VH+LSHHLSLPK S +M 
Sbjct: 197 GFPYGSWNDSP-FSENFNGMKRDPDDNGKPFSAAQNGELGNRVHLLSHHLSLPKASVDMV 255

Query: 263 AVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD 322
           A+EKFL FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD
Sbjct: 256 AMEKFLHFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD 315

Query: 323 MLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           MLDLAVDYIKDLQ Q+KTLSDNRA CKC   QKPV+NQIV
Sbjct: 316 MLDLAVDYIKDLQKQYKTLSDNRANCKCLSKQKPVQNQIV 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/398 (58%), Positives = 270/398 (67%), Gaps = 64/398 (16%)

Query: 1   MDSSTNHNYHQQS-----NPGLSRFNSAPTALLVNFTDSLESGGVNKSS-----FESERL 50
           MDS+TN+ +HQQ+     N GL RF SAP++LL NFTDS +  GV+K +     FESER 
Sbjct: 36  MDSNTNY-HHQQNQNQPPNSGLLRFRSAPSSLLANFTDSGD--GVHKGANLCDDFESER- 91

Query: 51  ISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSC-SGLPPHYPRQSS-----AMDHNSY 104
              FM  GG       FQ+           S  SC S LPP YPRQSS     AMD  SY
Sbjct: 92  ---FMPCGG-------FQD-----------SAMSCQSQLPPQYPRQSSSTSSSAMD-GSY 129

Query: 105 DLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPST 164
            +    +   K   S+LVRQSSSPAGLF+ LS QNGYA  + VG++   N  NG++SPST
Sbjct: 130 GVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPST 188

Query: 165 KRLKSQISIPSRIPSSLGMLSRVSEVESD-----GPTHGKVRNGNGDTQFYSTGFSYGSW 219
            RLK Q+S  S +PSSLG+L ++SE+ S+      P   K+ N NGD +FYS GF YGSW
Sbjct: 189 SRLKPQVSFSSGLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSW 248

Query: 220 NDSSHFTESFTDMKREQGNG---------------ELGNSVHMLSHHLSLPKTSAEMAAV 264
           NDS+HF E+F+ MKR+Q N                E G+   +LSHHLSLPKTSAEMAA+
Sbjct: 249 NDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAM 307

Query: 265 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 324
           EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML
Sbjct: 308 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 367

Query: 325 DLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           DLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 368 DLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/398 (58%), Positives = 270/398 (67%), Gaps = 64/398 (16%)

Query: 1   MDSSTNHNYHQQS-----NPGLSRFNSAPTALLVNFTDSLESGGVNKSS-----FESERL 50
           MDS+TN+ +HQQ+     N GL RF SAP++LL NFTDS +  GV+K +     FESER 
Sbjct: 25  MDSNTNY-HHQQNQNQPPNSGLLRFRSAPSSLLANFTDSGD--GVHKGANLCDDFESER- 80

Query: 51  ISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSC-SGLPPHYPRQSS-----AMDHNSY 104
              FM  GG       FQ+           S  SC S LPP YPRQSS     AMD  SY
Sbjct: 81  ---FMPCGG-------FQD-----------SAMSCQSQLPPQYPRQSSSTSSSAMD-GSY 118

Query: 105 DLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPST 164
            +    +   K   S+LVRQSSSPAGLF+ LS QNGYA  + VG++   N  NG++SPST
Sbjct: 119 GVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPST 177

Query: 165 KRLKSQISIPSRIPSSLGMLSRVSEVESD-----GPTHGKVRNGNGDTQFYSTGFSYGSW 219
            RLK Q+S  S +PSSLG+L ++SE+ S+      P   K+ N NGD +FYS GF YGSW
Sbjct: 178 SRLKPQVSFSSGLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSW 237

Query: 220 NDSSHFTESFTDMKREQGNG---------------ELGNSVHMLSHHLSLPKTSAEMAAV 264
           NDS+HF E+F+ MKR+Q N                E G+   +LSHHLSLPKTSAEMAA+
Sbjct: 238 NDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAM 296

Query: 265 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 324
           EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML
Sbjct: 297 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 356

Query: 325 DLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           DLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 357 DLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120208|ref|XP_002330991.1| predicted protein [Populus trichocarpa] gi|222872921|gb|EEF10052.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/375 (57%), Positives = 256/375 (68%), Gaps = 65/375 (17%)

Query: 19  RFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSP--- 75
           RF SA ++LL NFTD+                       G DN +  +FQ+FE KS    
Sbjct: 15  RFRSARSSLLANFTDN-----------------------GVDNDSVLNFQDFEDKSAARV 51

Query: 76  ----VSYGNSQQSCSGLPPHYPRQSSA-----MDHNSYDLF----LDQSSRVKSVNSNLV 122
               V+Y    +S  GLPPHYPRQSSA     MD +SY L     +    +V+ V+SN  
Sbjct: 52  REEAVNYSCLPRSYPGLPPHYPRQSSATSSSAMD-SSYGLIGSISIGHHEQVEKVDSNPA 110

Query: 123 RQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLG 182
           RQ+SSPAGLF  L+ QNG      VG+Y G+NG+N + SP   RL+SQ+S  SR+PSSLG
Sbjct: 111 RQNSSPAGLFGNLTVQNG------VGNYSGLNGTNREASP---RLQSQLSFSSRVPSSLG 161

Query: 183 MLSRVSEV-----ESDGPTHGKVRNGNGDTQFYST-GFSYGSWNDSSHFTESFTDMKREQ 236
           +LS++SE+     E+  P  GK+ + + D++FYS+ GF YGSWNDS H +E+F+ MKREQ
Sbjct: 162 LLSQISEIGSESMEAGSPDSGKLSSVSVDSRFYSSHGFPYGSWNDS-HLSENFSSMKREQ 220

Query: 237 ---------GNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATH 287
                     NGELGN  H+LSHHLSLPKT+ EM A+EKFL FQDSVPCKIRAKRGCATH
Sbjct: 221 ENGNLFSNAQNGELGNRAHVLSHHLSLPKTAMEMVAMEKFLHFQDSVPCKIRAKRGCATH 280

Query: 288 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 347
           PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV YIKDLQ Q+KTLSDNRA 
Sbjct: 281 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVVYIKDLQKQYKTLSDNRAN 340

Query: 348 CKCSKIQKPVENQIV 362
           CKC   QKPV+N+IV
Sbjct: 341 CKCLSKQKPVQNRIV 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500459|ref|XP_003519049.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 216/409 (52%), Positives = 256/409 (62%), Gaps = 78/409 (19%)

Query: 1   MDSSTNHN--YHQQSNP--GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMN 56
           MDS  +H+  Y QQ+ P  GL RF SAP++LL N T           SF SE   S    
Sbjct: 1   MDSHIHHHQSYQQQNQPSSGLLRFRSAPSSLLSNLT----------PSFVSEDFGS---- 46

Query: 57  SGGDNSNNSSFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQ------ 95
                   SSF+E E       GN+ + CS               GLPPHYPR       
Sbjct: 47  --------SSFRELE-------GNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHGSSSST 91

Query: 96  -SSAMDHNSYDLF----LDQSSRVKSVNSNLVRQSSSPAGLFAK--LSAQNGYASTKEVG 148
            SSAM+  SY +     LD  +  K   S+L+RQSSSPAGLF+   +S QNG+A+ K VG
Sbjct: 92  SSSAME-GSYGMVSSMGLDHEAPHKGFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVG 150

Query: 149 SYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSE-----VESDGPTHGKVRNG 203
           +YG VNGSNG+LSP   RLK+Q+S   R  SSLGMLS++SE     +E+  P     ++G
Sbjct: 151 NYGAVNGSNGELSPCINRLKNQVSFSPRNASSLGMLSQISELGSEDIEATSPDD-DTKHG 209

Query: 204 NGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQG----------NGELGNSVHMLSHHLS 253
             DTQ Y  GF +GSWND+   +E+ + +KR +           NGEL N V+MLSHHLS
Sbjct: 210 GNDTQHYGPGFPFGSWNDTPQLSENISGLKRGRSGNEKMFSDVQNGELANQVNMLSHHLS 269

Query: 254 LPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPN 313
           LPKTSAEM  +EK LQF DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVP+
Sbjct: 270 LPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPH 329

Query: 314 MDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           MDKQTNTADMLDLAV+YIKDLQ QFKTLS+ RA CKC  + K   NQI 
Sbjct: 330 MDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMPKADTNQIA 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437603|ref|XP_004136581.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus] gi|449522885|ref|XP_004168456.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 206/380 (54%), Positives = 262/380 (68%), Gaps = 43/380 (11%)

Query: 7   HNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNK-SSFESERLISRFMN-SGGDNSNN 64
           H   QQ N  L RF SAP++L  +F+  ++S  +N     ESERL+SRF + + G NSN+
Sbjct: 6   HQSFQQPNSALLRFRSAPSSLFADFSHGIDSKRLNPFEGSESERLVSRFGSRADGCNSND 65

Query: 65  SSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKS-------V 117
           S       +SPV+ GN     SGLPPHYPR SSA++ +S       SS   S       +
Sbjct: 66  S-------ESPVA-GNYS---SGLPPHYPRLSSAVNCSSSSSSSSCSSSSSSMCSSLGFL 114

Query: 118 NSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDL---SPSTKRLKSQISIP 174
            SNLVRQSSSPAG+ ++L+ QNGY      GS+  ++G+N  +   SPS+ RL SQIS  
Sbjct: 115 GSNLVRQSSSPAGVLSQLN-QNGYGG----GSFSRLSGNNNGVEVVSPSSNRLNSQISFS 169

Query: 175 SRIPSSLGMLSRVSEVESDGPTHGKVRNGN-GDTQFYS-TGFSYGSWNDSSHFTESFTDM 232
           S +PSSLGM  ++SE       + K+ N N G+TQF++ +GF + SWN+SS F+E+F  +
Sbjct: 170 SLVPSSLGMFPQISEQVVG---NEKLSNSNNGETQFFTPSGFPFASWNESSQFSETFPGI 226

Query: 233 KRE----------QGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKR 282
           KR+            NGE+GN VH+LSHHLSLPK  +++A++EK LQ QD+VPC+IRAKR
Sbjct: 227 KRDPDSNKKFSSGHQNGEIGNRVHLLSHHLSLPKNVSDVASIEKLLQLQDAVPCRIRAKR 286

Query: 283 GCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 342
           GCATHPRSIAERVRRTRISERMRKLQ+LVPNMDKQTNTADMLDLAVDYIK+LQ QFKTLS
Sbjct: 287 GCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQKQFKTLS 346

Query: 343 DNRAKCKCSKIQKPVENQIV 362
           DNRA C C  +QKP+ NQI+
Sbjct: 347 DNRANCVCVNMQKPLSNQIM 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739719|emb|CBI29901.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/300 (62%), Positives = 211/300 (70%), Gaps = 42/300 (14%)

Query: 84  SC-SGLPPHYPRQSS-----AMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSA 137
           SC S LPP YPRQSS     AMD  SY +    +   K   S+LVRQSSSPAGLF+ LS 
Sbjct: 2   SCQSQLPPQYPRQSSSTSSSAMD-GSYGVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSG 59

Query: 138 QNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTH 197
           QNGYA  + VG++   N  NG++SPST RLK Q+S  S +PSSLG+L ++SE+ SD    
Sbjct: 60  QNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSSGLPSSLGLLPQISEIGSD---- 115

Query: 198 GKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNG---------------ELG 242
                          GF YGSWNDS+HF E+F+ MKR+Q N                E G
Sbjct: 116 --------------PGFPYGSWNDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFG 160

Query: 243 NSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE 302
           +   +LSHHLSLPKTSAEMAA+EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE
Sbjct: 161 HRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE 220

Query: 303 RMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           RMRKLQELVPNMDKQTNTADMLDLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 221 RMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537351|ref|XP_003537191.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 201/393 (51%), Positives = 242/393 (61%), Gaps = 77/393 (19%)

Query: 16  GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSP 75
           GL RF SAP++LL N T            F SE   S            SSF+E +    
Sbjct: 23  GLLRFRSAPSSLLSNLT-----------PFVSEDFGS------------SSFRELQ---- 55

Query: 76  VSYGNSQQSCS---------------GLPPHYPRQSSAMD---------HNSYDLF---- 107
              GN+ + CS               GLPPHYPR   +             S+ L     
Sbjct: 56  ---GNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHRGSSSSAATSSSAMEGSFGLVGSMG 112

Query: 108 LDQSSRVKSVNSNLVRQSSSPAGLFAK--LSAQNGYASTKEVGSYGGVNGSNGDLSPSTK 165
           ++  +    + S+L+R S+SPAGLF+   ++ QNG+A+ K VG+YGGVNGSNG+LSP   
Sbjct: 113 MNHETPQNGLGSSLLRHSTSPAGLFSNNNINFQNGFATMKGVGNYGGVNGSNGELSPCIN 172

Query: 166 RLKSQISIPSRIPSSLGMLSRVSEV-----ESDGPTHGKVRNGNGDTQFYSTGFSYGSWN 220
            LK+Q+S   R  SSLGMLS++SE+     E+  P       GN DTQ Y  GF YGSWN
Sbjct: 173 GLKNQVSFSPRNASSLGMLSQISEIGNEDIEATSPDDDTRHEGN-DTQQYGPGFPYGSWN 231

Query: 221 DSSHFTESFTDMKR-----------EQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQ 269
           D+   +E+ + +KR           E  NGELGN V+MLSHHLSLPKTSAEM  ++K LQ
Sbjct: 232 DTPQLSENLSGLKRGRSSNEKMFSDEIQNGELGNQVNMLSHHLSLPKTSAEMITMKKLLQ 291

Query: 270 FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVD 329
           F DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV+
Sbjct: 292 FPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVE 351

Query: 330 YIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           YIKDLQ QFKTLS+ RAKC+C+ +QK   NQI 
Sbjct: 352 YIKDLQKQFKTLSEKRAKCECTSMQKADTNQIA 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282767|dbj|BAJ34249.1| unnamed protein product [Thellungiella halophila]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/393 (50%), Positives = 246/393 (62%), Gaps = 66/393 (16%)

Query: 1   MDSSTNHNYHQQSN------PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRF 54
           MDS++ HN+H   N       GL RF SAP+++L  F D  +SG      F+S+RL+SRF
Sbjct: 1   MDSNS-HNHHYDPNHISSSGSGLLRFRSAPSSVLAAFVDDEKSG------FDSDRLLSRF 53

Query: 55  M--NSGGDNSNNSSFQEFEVKSPVSYGNSQQSCS----------------GLPPHYPRQS 96
              N G D+ +  +  EFE KSPVS  N+  S +                GLPPHYPRQS
Sbjct: 54  ASSNGGNDDLDLPNPSEFEDKSPVSLTNTSVSYAATLPPPPRQTEPSSFLGLPPHYPRQS 113

Query: 97  SAMDHN-SYDLFLDQSSR-VKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVN 154
             M +    D FL  ++   K   SNL+RQSSSPAG+F  LS QNGY S + + +YGG  
Sbjct: 114 KGMMNTIGLDQFLGMNNHHTKPAESNLLRQSSSPAGMFTNLSDQNGYGSMRSLMNYGG-E 172

Query: 155 GSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGF 214
             + D   ++  L+   S+ SR  SSLGMLS++ E+                    +T F
Sbjct: 173 EEDEDRPSNSNGLRRHCSLSSRPLSSLGMLSQIPEI--------------------ATNF 212

Query: 215 SYGSWNDSSHFTESFTDMKRE----------QGNGELGNSVHMLSHHLSLPKTSAEMAAV 264
            Y  WND S F ++ + +KRE            NGE GN + +LSHHLSLPK+S +MA+V
Sbjct: 213 QYNHWNDPSSFIDNLSSLKRETEDDAKLFNGAQNGESGNRMQLLSHHLSLPKSS-DMASV 271

Query: 265 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 324
           +KF+Q QDSVPCK+RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DML
Sbjct: 272 DKFMQLQDSVPCKVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDML 331

Query: 325 DLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPV 357
           DLAVDYIKDLQ Q+K L+DNRA CKC K +KPV
Sbjct: 332 DLAVDYIKDLQRQYKILNDNRANCKC-KEKKPV 363

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504823|ref|XP_003521194.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 199/394 (50%), Positives = 254/394 (64%), Gaps = 39/394 (9%)

Query: 1   MDSSTNHNY---HQQSNPGLSRFNSAPTALLVNFTDSLE-SGGVNKSSFESERLISRFMN 56
           MDS++ ++    HQQ N GL RF SAPTA   NF    E +   N +++E      RF+N
Sbjct: 1   MDSNSRYHVQQQHQQPNSGLLRFRSAPTA---NFKQQGEVAANTNGNAWEGSEPFLRFLN 57

Query: 57  SGG--DNSNNSSFQEF---------------EVKSPVSYGNSQQSCSG-LPPHYPRQSSA 98
           SG   D +++ + +EF                  SP+S  NSQQ  S  + P     +SA
Sbjct: 58  SGDTHDTTSSPTLREFVDNKVSNNSKPAKESSASSPLSRMNSQQGYSASMLPSRSTVTSA 117

Query: 99  MDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAK-LSAQNGYASTKEVGSYGGVNGSN 157
           M   S  + +DQS+  KS +SN +RQSS PAG F+  +S QNGY + K VG+Y GVNG++
Sbjct: 118 MMLGS--MGIDQSA--KSFDSNSLRQSSFPAGHFSNNISFQNGYDAMKGVGNYSGVNGND 173

Query: 158 GDLSPSTKRLKSQISIPSRIPSS-LGMLSRVSEVESDG-----PTHGKVRNGNGDTQFYS 211
           G+LS S  R+K+ IS  S  PSS LGMLS  S++ ++G     P  G+  + NGD ++Y 
Sbjct: 174 GELSLSMNRMKNHISFSSISPSSSLGMLSPTSKMGTEGIRVTRPEDGRQGSCNGDARYYG 233

Query: 212 TGFSYGSWNDSSHFTE---SFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFL 268
            GF Y SWN+ SH      S  ++  +  NGE GN V  LSHHLSLP+TS+EM A++  L
Sbjct: 234 PGFPYASWNEPSHPKRQRSSNDELLFDSQNGEPGNQVQRLSHHLSLPRTSSEMFAMDNLL 293

Query: 269 QFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV 328
           QF DSVPCKIRAKRG ATHPRSIAERVRRTRISER+RKLQELVP MDKQT+TA+MLDLA+
Sbjct: 294 QFSDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPTMDKQTSTAEMLDLAL 353

Query: 329 DYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 362
           DYIKDLQ QFKTLSD RAKCKC  +QK   +++ 
Sbjct: 354 DYIKDLQKQFKTLSDKRAKCKCINMQKSEADRVA 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.895	0.902	0.478	5.9e-73
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.604	0.577	0.425	8.6e-47
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.367	0.886	0.708	4.8e-46
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.386	0.642	0.586	5.8e-40
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.919	0.919	0.334	6.5e-35
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.240	0.335	0.703	9e-34
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.301	0.416	0.552	6.8e-30
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.187	0.219	0.623	7.3e-14
TAIR|locus:2047555	350	LRL1 "AT2G24260" [Arabidopsis	0.187	0.194	0.637	1.4e-13
UNIPROTKB|Q7Y1H4	294	OSJNBa0094F01.11 "Putative unc	0.187	0.231	0.623	1.6e-13

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 185/387 (47%), Positives = 225/387 (58%)

Query:     1 MDSSTNHNYHQQ-SNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMXXXX 59
             MDS+ NH Y    +  GL RF SAP+++L  F D       +K  F+S+RL+SRF+    
Sbjct:     1 MDSN-NHLYDPNPTGSGLLRFRSAPSSVLAAFVDD------DKIGFDSDRLLSRFVTSNG 53

Query:    60 XXXXXXXFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQSSA-MDHNS 103
                      +FE KSPVS  N+  S +               GLPPHYPRQS   M+   
Sbjct:    54 VNGDLGS-PKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSKGIMNSVG 112

Query:   104 YDLFLD-QSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEXXXXXXXXXXXXDLSP 162
              D FL   +   K V SNL+RQSSSPAG+F  LS QNGY S +             + SP
Sbjct:   113 LDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEED-----EESP 167

Query:   163 STKR-LKXXXXXXXXXXXXLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWND 221
             S    L+            LGMLS++ E+  +                  T F Y  WND
Sbjct:   168 SNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPE------------------TNFPYSHWND 209

Query:   222 SSHFTESFTDMKRE---QG-------NGELGNSVHMLSHHLSLPK---TSAEMAAVEKFL 268
              S F ++ + +KRE    G       NGE GN + +LSHHLSLPK   T+++M +V+K+L
Sbjct:   210 PSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYL 269

Query:   269 QFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV 328
             Q QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DMLDLAV
Sbjct:   270 QLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAV 329

Query:   329 DYIKDLQNQFKTLSDNRAKCKCSKIQK 355
             DYIKDLQ Q+K L+DNRA CKC   +K
Sbjct:   330 DYIKDLQRQYKILNDNRANCKCMNKEK 356

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 103/242 (42%), Positives = 137/242 (56%)

Query:   119 SNLVRQSSSPAGLFAKLSAQNGYASTKEXXXXXXXXXXXXDLSPSTKRLKXXXXXXXXXX 178
             +NL R +SSPAGLF+ +  +  YA+  +             +S S               
Sbjct:   150 NNLARHNSSPAGLFSSIDVETAYAAVMKSMGGFGGSNV---MSTSNTEASSLTPRSKLLP 206

Query:   179 XXLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGN 238
                  +S +SEV+       ++       +  S GF+    N+ S  +   T + R Q  
Sbjct:   207 PTSRAMSPISEVDVKPGFSSRL-----PPRTLSGGFNRSFGNEGSA-SSKLTALARTQSG 260

Query:   239 G---------ELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPR 289
             G         +  +    L+HH+SLPK+ ++   +E+ L   DS+PCKIRAKRGCATHPR
Sbjct:   261 GLDQYKTKDEDSASRRPPLAHHMSLPKSLSD---IEQLLS--DSIPCKIRAKRGCATHPR 315

Query:   290 SIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349
             SIAERVRRT+ISERMRKLQ+LVPNMD QTNTADMLDLAV YIKDLQ Q K L ++RA+C+
Sbjct:   316 SIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCR 375

Query:   350 CS 351
             CS
Sbjct:   376 CS 377

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 97/137 (70%), Positives = 113/137 (82%)

Query:   219 WNDSSHFTES-FTDMKREQGNGEL---GNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSV 274
             W +SS  +++  + +KR++ + E    G     L+H  SLPKTS+EMAA+EKFLQFQD+V
Sbjct:     6 WEESSLMSDTNISGVKRQRDSSEPSQNGGGGGGLAHQFSLPKTSSEMAAIEKFLQFQDAV 65

Query:   275 PCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDL 334
             PCKIRAKRGCATHPRSIAERVRRTRISER+RKLQELVPNMDKQTNTADMLDLAVDYIKDL
Sbjct:    66 PCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDL 125

Query:   335 QNQFKTLSDNRAKCKCS 351
             Q Q K L+D+RA C CS
Sbjct:   126 QKQVKGLNDSRANCTCS 142

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 399 (145.5 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 85/145 (58%), Positives = 105/145 (72%)

Query:   209 FYSTGFSYGSWNDSSHFTESFTDMKR-EQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKF 267
             F S GFS GSW DS+    S +  K    GN ++   +  LS++ S      EMA VEK+
Sbjct:    66 FSSGGFSIGSWEDSNSIVFSTSTGKSGAHGNDDI---IATLSNYESQLVAPREMAGVEKY 122

Query:   268 LQFQ-DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDL 326
             LQ Q D VP ++RAKRGCATHPRSIAER RRTRISE++RKLQ LVPNMDKQT+T+DMLDL
Sbjct:   123 LQMQHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDL 182

Query:   327 AVDYIKDLQNQFKTLSDNRAKCKCS 351
             AVD+IK LQ+Q +TL +++ KC CS
Sbjct:   183 AVDHIKGLQSQLQTLKEDKEKCTCS 207

GO:0005634 "nucleus" evidence=IC

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 126/377 (33%), Positives = 184/377 (48%)

Query:     3 SSTNHNYHQQSNPG---LSRFNSAPTALLVNFTDSLESGGV-NKSSF-----ESERLISR 53
             SST+ +  + S PG   L R+ SAP + L +  D +  GG  N   F      S+  I  
Sbjct:     6 SSTSSSSQRSSLPGGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGN 65

Query:    54 FMXXXXXXXXXXXFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSR 113
             F             +       V+  +  Q   G   +           SY  F + S +
Sbjct:    66 FFTGAADSSS---LRSDSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQ 122

Query:   114 VKSV-----NSN----LVRQSSSPAGLFAKLSA-QNGYASTKEXXXXXXXXXXXXDLSPS 163
              KS      NS+    L RQ SSPA  F  L++ +N ++  +                 S
Sbjct:   123 HKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHS 182

Query:   164 TKRLKXXXXXXXXXXXXLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYG---SWN 220
               RLK               L+R++EV ++ P H    +G+G + F +  F      SW+
Sbjct:   183 --RLKSQLSFTNHDS-----LARINEV-NETPVH----DGSGHS-FSAASFGAATTDSWD 229

Query:   221 DSSHFTESFTDMKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQF-QDSVPCKIR 279
             D S  +  FT  +  + + ++ +   + S + SLP  ++ M  ++ F+Q  +DSVPCKIR
Sbjct:   230 DGSG-SIGFTVTRPSKRSKDMDSG--LFSQY-SLPSDTS-MNYMDNFMQLPEDSVPCKIR 284

Query:   280 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFK 339
             AKRGCATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ +DMLDLAV +IK LQ+Q +
Sbjct:   285 AKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344

Query:   340 TLSDNRAKCKCSKIQKP 356
              L  ++  C C   +KP
Sbjct:   345 NLKKDQENCTCGCSEKP 361

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 64/91 (70%), Positives = 79/91 (86%)

Query:   270 FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVD 329
             F+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+R+LQELVPNMDKQTNTADML+ AV+
Sbjct:   173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232

Query:   330 YIKDLQNQFKTLSDNRAKCKCSKIQKPVENQ 360
             Y+K LQ+Q + L++ + +CKC    KP E Q
Sbjct:   233 YVKALQSQIQELTEQQKRCKC----KPKEEQ 259

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 68/123 (55%), Positives = 88/123 (71%)

Query:   229 FTD-MKREQGNGELGNSVHMLSHHLSLPKTSAEMAAVEKFLQFQDSVPCKIRAKRGCATH 287
             FT  MK EQ +G++   V  +S          +M  +E  ++  DSV  ++RAKRGCATH
Sbjct:   147 FTSQMKGEQSSGQVPTGVSSMS----------DMN-MENLME--DSVAFRVRAKRGCATH 193

Query:   288 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 347
             PRSIAERVRRTRIS+R+RKLQELVPNMDKQTNTADML+ AV+Y+K LQ Q + L++ + +
Sbjct:   194 PRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKR 253

Query:   348 CKC 350
             C C
Sbjct:   254 CTC 256

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 43/69 (62%), Positives = 53/69 (76%)

Query:   277 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336
             K+RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct:   129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query:   337 QFKTLSDNR 345
             Q K LS +R
Sbjct:   188 QVKVLSMSR 196

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 44/69 (63%), Positives = 53/69 (76%)

Query:   277 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336
             KIRA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct:   137 KIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQL 195

Query:   337 QFKTLSDNR 345
             Q K LS +R
Sbjct:   196 QVKVLSMSR 204

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q7Y1H4 OSJNBa0094F01.11 "Putative uncharacterized protein OSJNBa0094F01.11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 193 (73.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 43/69 (62%), Positives = 53/69 (76%)

Query:   277 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336
             K+RA+RG AT P SIAER+RR RI+ERMR LQELVPN +K T+ A MLD  +DY+K L+ 
Sbjct:   132 KVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK-TDRAAMLDEILDYVKFLRL 190

Query:   337 QFKTLSDNR 345
             Q K LS +R
Sbjct:   191 QVKVLSMSR 199

GO:0005634 "nucleus" evidence=IC

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GR3	BH130_ARATH	No assigned EC number	0.5064	0.8895	0.8969	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	6e-12
smart00353	53	smart00353, HLH, helix loop helix domain	2e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-09

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 288 PRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQ 337
             ++ ER RR RI++   +L+ L+P +   K+ + A++L  AVDYIK LQ  
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQEL 58

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 290 SIAERVRRTRISERMRKLQELVP--NMDKQTNTADMLDLAVDYIKDLQNQ 337
           +  ER RR +I+E   +L+ L+P    +K+ + A++L LA++YIK LQ +
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEE 50

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 290 SIAERVRRTRISERMRKLQELVPN-MDKQTNTADMLDLAVDYIKDLQ 335
           +  ER RR RI++   +L+EL+P   +K+ + A++L LA++YIK LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.32
smart00353	53	HLH helix loop helix domain.	99.3
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.25
KOG1318	411	consensus Helix loop helix transcription factor EB	99.09
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.77
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.44
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.24
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.16
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.85
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.72
PLN03217	93	transcription factor ATBS1; Provisional	97.42
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.09
KOG0561	373	consensus bHLH transcription factor [Transcription	96.76
KOG3910	632	consensus Helix loop helix transcription factor [T	94.27
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	88.88
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	87.88
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	87.76
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	85.55

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.32  E-value=2.7e-12  Score=94.64  Aligned_cols=54  Identities=37%  Similarity=0.655  Sum_probs=48.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007          286 THPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       286 ~~~hsiaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      ...|+..||+||++||+.|..|+.+||..  ..+++|+.||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34688999999999999999999999998  3459999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.30  E-value=5.6e-12  Score=91.54  Aligned_cols=50  Identities=38%  Similarity=0.726  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007          290 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       290 siaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      +..||+||++||+.|..|+.+||.+  ..+++|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3689999999999999999999963  2348999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.25  E-value=9.6e-12  Score=91.74  Aligned_cols=48  Identities=40%  Similarity=0.652  Sum_probs=44.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcccCCC----CCCCCHHHHHHHHHHHHHHHH
Q 018007          288 PRSIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ  335 (362)
Q Consensus       288 ~hsiaERrRRerIneri~~Lr~LVP~~----~Kq~dKAsIL~eAI~YIK~LQ  335 (362)
                      .|+..||+||++||+.|..|+.+||.+    ..+++|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            488999999999999999999999987    345999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.09  E-value=5.8e-11  Score=120.08  Aligned_cols=58  Identities=28%  Similarity=0.572  Sum_probs=50.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhhcccCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018007          285 ATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLS  342 (362)
Q Consensus       285 a~~~hsiaERrRRerIneri~~Lr~LVP~~~K---q~dKAsIL~eAI~YIK~LQ~qVq~L~  342 (362)
                      ++..|+.+|||||++||+||++|..|||.|..   +++|+.||..+++||+.||+..++..
T Consensus       233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~  293 (411)
T KOG1318|consen  233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR  293 (411)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            34569999999999999999999999999842   37899999999999999988776433

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.77  E-value=2.2e-09  Score=99.54  Aligned_cols=74  Identities=30%  Similarity=0.378  Sum_probs=59.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhcccccccc
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFKTLSDN----RAKCKCSKIQKP  356 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~K------q~dKAsIL~eAI~YIK~LQ~qVq~L~~~----~~~~tc~~~~k~  356 (362)
                      ..|..+||+||+.|+.....|++|||.|..      ++.||.||..+|+||.+|..++..-+++    ++.++++.+-+.
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~  143 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKV  143 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999997654      2789999999999999998777655544    466777766665


Q ss_pred             cccc
Q 018007          357 VENQ  360 (362)
Q Consensus       357 ~~~q  360 (362)
                      .++|
T Consensus       144 ~YEq  147 (229)
T KOG1319|consen  144 NYEQ  147 (229)
T ss_pred             HHHH
Confidence            5544

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.44  E-value=8.8e-08  Score=91.81  Aligned_cols=51  Identities=31%  Similarity=0.596  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHHHHHHhhcccCCCCC-------CCCHHHHHHHHHHHHHHHHHHHH
Q 018007          289 RSIAERVRRTRISERMRKLQELVPNMDK-------QTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       289 hsiaERrRRerIneri~~Lr~LVP~~~K-------q~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      |-+.||+||.|||+-|.+|++|||.+.|       +++||+||+.||+|+|.|+.+..
T Consensus        36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            4589999999999999999999995544       28899999999999999987654

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.24  E-value=6.1e-07  Score=97.47  Aligned_cols=52  Identities=27%  Similarity=0.485  Sum_probs=48.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhhcccCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018007          286 THPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQNQ  337 (362)
Q Consensus       286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~---Kq~dKAsIL~eAI~YIK~LQ~q  337 (362)
                      +.+|+.+|||||+++|..|.+|.+|||.|.   .|+||-+||.+||++||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            567899999999999999999999999988   5699999999999999999886

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.16  E-value=8.7e-07  Score=97.07  Aligned_cols=66  Identities=29%  Similarity=0.463  Sum_probs=59.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          284 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       284 ~a~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      ..+..|+++|||-|.-||+||.+|++|||+..-++.|..+|..||+||++|+...+.|+.+.+..+
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            447889999999999999999999999999887799999999999999999999888887765554

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.85  E-value=3.8e-05  Score=73.31  Aligned_cols=65  Identities=22%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          285 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQT--NTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       285 a~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~--dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      ++..|+.-||+||..|.+.|..|+.+||.....+  +.+.||+.|++||+.|+.+..+.....+++.
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~  125 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS  125 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3445889999999999999999999999655422  2699999999999999887776665554443

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.72  E-value=7.5e-05  Score=72.29  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHhhc-ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018007          291 IAERVRRTRISERMRKLQE-LVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRA  346 (362)
Q Consensus       291 iaERrRRerIneri~~Lr~-LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~  346 (362)
                      +-||||=.|+||.|.+|+. -+++-+..+-|..||.-||+||..||.-++++.+...
T Consensus       124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            4599999999999999964 5677777799999999999999999999988876543

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.42  E-value=0.00036  Score=58.01  Aligned_cols=56  Identities=23%  Similarity=0.479  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhhcccCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 018007          295 VRRTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC  350 (362)
Q Consensus       295 rRRerIneri~~Lr~LVP~~~K-----q~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc  350 (362)
                      ---+.|+|-+.+||.|+|....     +...+-||+||+.||+.|..+|..|.+.+..+-.
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~   77 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA   77 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3347899999999999994321     2678899999999999999999999998866543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.09  E-value=0.00036  Score=65.32  Aligned_cols=57  Identities=26%  Similarity=0.400  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHHHHHHhhcccCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018007          289 RSIAERVRRTRISERMRKLQELVPN--M-DKQTNTADMLDLAVDYIKDLQNQFKTLSDNR  345 (362)
Q Consensus       289 hsiaERrRRerIneri~~Lr~LVP~--~-~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~  345 (362)
                      ++..||.|=+-+|..|..||.+||.  . +|++.|..+|..||.||++|+.-++.-+...
T Consensus       113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            4556999999999999999999994  3 6679999999999999999998887766554

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=96.76  E-value=0.001  Score=66.15  Aligned_cols=52  Identities=29%  Similarity=0.442  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHHHHHHhhcccCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018007          290 SIAERVRRTRISERMRKLQELVPN--MDKQTNTADMLDLAVDYIKDLQNQFKTLS  342 (362)
Q Consensus       290 siaERrRRerIneri~~Lr~LVP~--~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~  342 (362)
                      +..||||=.-||-.|..||.|+|.  ..| +.||.||+.+.+||.+|+.+.-+|=
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~ll  118 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTELL  118 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhcccccc
Confidence            345999999999999999999995  445 9999999999999999986654443

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=94.27  E-value=0.031  Score=58.99  Aligned_cols=63  Identities=25%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHHHHHHHhhcccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 018007          290 SIAERVRRTRISERMRKLQELVP---NMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKI  353 (362)
Q Consensus       290 siaERrRRerIneri~~Lr~LVP---~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc~~~  353 (362)
                      ++-||.|=..|||.|++|.++.=   ..+|...|--||-.||.-|-.|++||++-. .+-|+.|+++
T Consensus       531 NARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN-LNPKaaclkR  596 (632)
T KOG3910|consen  531 NARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN-LNPKAACLKR  596 (632)
T ss_pred             hhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc-CChhhhhhhc
Confidence            45577777889999999998874   455545799999999999999999998632 3345555543

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=88.88  E-value=0.26  Score=54.01  Aligned_cols=44  Identities=25%  Similarity=0.499  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcccC---CCCCCCCHHHHHHHHHHHHHHH
Q 018007          291 IAERVRRTRISERMRKLQELVP---NMDKQTNTADMLDLAVDYIKDL  334 (362)
Q Consensus       291 iaERrRRerIneri~~Lr~LVP---~~~Kq~dKAsIL~eAI~YIK~L  334 (362)
                      -|.|.||.|=|+-|.+|..++|   ...-++|||+|+..||-|+|-=
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlr   98 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLR   98 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence            3789999999999999999999   3344699999999999999853

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=87.88  E-value=0.25  Score=45.36  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=43.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcccCC--CCCCCCHHHHHHHHHHHHHHHHHH
Q 018007          288 PRSIAERVRRTRISERMRKLQELVPN--MDKQTNTADMLDLAVDYIKDLQNQ  337 (362)
Q Consensus       288 ~hsiaERrRRerIneri~~Lr~LVP~--~~Kq~dKAsIL~eAI~YIK~LQ~q  337 (362)
                      .|++-||+|=.-+|+.|..||.++|.  .+| +.|.--|..|-.||-+|=.-
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence            37888999999999999999999994  566 88999999999999998543

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=87.76  E-value=0.47  Score=51.00  Aligned_cols=40  Identities=25%  Similarity=0.533  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHhhcccC----CCCCCCCHHHHHHHHHHHHHH
Q 018007          293 ERVRRTRISERMRKLQELVP----NMDKQTNTADMLDLAVDYIKD  333 (362)
Q Consensus       293 ERrRRerIneri~~Lr~LVP----~~~Kq~dKAsIL~eAI~YIK~  333 (362)
                      -+|-|+|+|-.|..|..|+|    .+.| +||-+||..+|-|++.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence            47889999999999999999    4566 9999999999999874

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=85.55  E-value=0.83  Score=47.85  Aligned_cols=44  Identities=27%  Similarity=0.429  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccCC---CCCCCCHHHHHHHHHHHHHHH
Q 018007          291 IAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDL  334 (362)
Q Consensus       291 iaERrRRerIneri~~Lr~LVP~---~~Kq~dKAsIL~eAI~YIK~L  334 (362)
                      -+.|.||++=|-.|.+|..|+|-   ++.|+||++|+..|.-|||.-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            46899999999999999999993   455799999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-11
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	8e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-06
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	4e-06
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	8e-06
1a0a_A	63	BHLH, protein (phosphate system positive regulator	1e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 15/54 (27%), Positives = 33/54 (61%)

Query: 290 SIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSD 343
           +  E+  R+ I++++ +L++LV   + + N + +L  A+DYI+ LQ+  + L  
Sbjct: 11  NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 279 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT-----ADMLDLAVDYIKD 333
             +R  A H  +  ER RR +I+  + +L +++P+   ++         +L  A DYI++
Sbjct: 3   EKRR--AQH--NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 334 LQNQ 337
           L+  
Sbjct: 59  LRQS 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 285 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQ-TNTADMLDLAVDYIKDLQNQFKTL 341
           A H  +  ER RR  I +    L++ VP++  +  + A +LD A +YI+ ++ +  T 
Sbjct: 4   AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 279 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQN 336
             KR   TH  ++ ER RR  +      L++ +P ++  ++     +L  A  YI  +Q 
Sbjct: 4   NVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 337 QFKTL 341
           + + L
Sbjct: 60  EEQKL 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 279 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQ-TNTADMLDLAVDYIKDLQNQ 337
             KR  A H  +  ER RR  I +    L++ VP++  +  + A +LD A +YI+ ++ +
Sbjct: 10  ADKR--AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65

Query: 338 FKTL 341
             T 
Sbjct: 66  NHTH 69

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 291 IAERVRRTRISERMRKLQELVPNMDKQTNT------ADMLDLAVDYIKDLQNQFKT 340
            AE+ RR R++  + +L  L+P   KQ N       A  ++ A  YI+ LQ    T
Sbjct: 8   HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.67
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.65
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.51
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.5
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.48
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.45
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.45
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.44
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.39
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.32
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.26
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.98
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.97
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.86
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.81
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.65
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.48
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.93

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.67  E-value=5.7e-17  Score=137.35  Aligned_cols=85  Identities=25%  Similarity=0.371  Sum_probs=53.4

Q ss_pred             CCCcccccCcCCCCCCCCcHHHHHHHHHHHHHHHHhhcccCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018007          272 DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC  348 (362)
Q Consensus       272 ~sv~~k~R~kR~~a~~~hsiaERrRRerIneri~~Lr~LVP~~~K---q~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~  348 (362)
                      ..++.+...|++..+.+|+++||+||++||++|.+|++|||++.+   +++|++||++||+||++||.+++.|+......
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~   93 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ   93 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677888889999999999999999999999999998853   48899999999999999999999999876555


Q ss_pred             cccccccc
Q 018007          349 KCSKIQKP  356 (362)
Q Consensus       349 tc~~~~k~  356 (362)
                      ..+...+.
T Consensus        94 ~~l~~~n~  101 (118)
T 4ati_A           94 KKLEHANR  101 (118)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            54444433

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.65  E-value=3e-17  Score=130.80  Aligned_cols=67  Identities=22%  Similarity=0.378  Sum_probs=60.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 018007          286 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK  352 (362)
Q Consensus       286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc~~  352 (362)
                      +..|+++||+||++||++|.+|++|||+++.++||++||++||+||++||.+++.|+.+.+.+...-
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   73 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999855599999999999999999999999999987776543

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.51  E-value=5.7e-15  Score=115.87  Aligned_cols=57  Identities=16%  Similarity=0.375  Sum_probs=51.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018007          286 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS  342 (362)
Q Consensus       286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~  342 (362)
                      +..|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            356899999999999999999999999876559999999999999999999987664

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.50  E-value=4.9e-15  Score=113.27  Aligned_cols=54  Identities=28%  Similarity=0.419  Sum_probs=47.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhhcccCCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q 018007          286 THPRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~K------q~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      +..|.++||+||++||..|..|+.|||.+.+      +++||+||+.||+||+.||++++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999999999996632      36799999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=8.2e-15  Score=111.34  Aligned_cols=55  Identities=24%  Similarity=0.437  Sum_probs=49.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhhcccCCCCC-----CCCHHHHHHHHHHHHHHHHHHHH
Q 018007          285 ATHPRSIAERVRRTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       285 a~~~hsiaERrRRerIneri~~Lr~LVP~~~K-----q~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      ....|+++||+||++||+.|.+|+.|||.+..     +++|++||++||+||+.||++++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            45679999999999999999999999998872     38999999999999999998753

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=7.9e-14  Score=110.09  Aligned_cols=63  Identities=25%  Similarity=0.444  Sum_probs=57.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~-Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      ..|+..||+||.+||+.|..|+.|||.+. .+++|++||..||+||+.|+.+++.|+.+.+.+.
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~   77 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999873 2399999999999999999999999999887765

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.45  E-value=9.1e-15  Score=115.01  Aligned_cols=55  Identities=25%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhhcccCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018007          283 GCATHPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQNQ  337 (362)
Q Consensus       283 ~~a~~~hsiaERrRRerIneri~~Lr~LVP~~~---Kq~dKAsIL~eAI~YIK~LQ~q  337 (362)
                      .+++..|+.+||+||++||+.|.+|+.|||.|.   .++|||+||+.||+|||.|+.-
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence            344567999999999999999999999999873   3399999999999999999743

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.44  E-value=1.2e-13  Score=109.53  Aligned_cols=62  Identities=27%  Similarity=0.464  Sum_probs=55.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      ..|+..||+||++||+.|..|+++||.+  .| ++|++||.+||+||+.|+.+++.|+.+.+.+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999985  55 99999999999999999999999988776554

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.39  E-value=3.8e-13  Score=108.67  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=54.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK  347 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~--Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~  347 (362)
                      ..|+..||+||+.||++|..|+++||.+.  ++++|++||.+||+||+.|+.+++.|..+.+.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~   70 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999863  34999999999999999999999988776544

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.32  E-value=8.6e-13  Score=104.40  Aligned_cols=57  Identities=28%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSD  343 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~---~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~  343 (362)
                      ..|+..||+||+.||+.|.+|+++||.   .+|..+|+.||..||+||+.||+++++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999995   455347999999999999999999998764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.26  E-value=9e-12  Score=99.20  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=55.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcccCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          288 PRSIAERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       288 ~hsiaERrRRerIneri~~Lr~LVP~~---~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      .|+..||+||..|++.|..|+++||.+   .| .+|+.||.+||+||+.|+.+++.|..+.+...
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~   67 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999965   44 89999999999999999999999998876554

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.98  E-value=1.4e-10  Score=90.06  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNM-DKQTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~-~Kq~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      ..|+.-||+|+..||+.|..|+++||.. +++++|..||..||+||+.|++.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            3478889999999999999999999964 3459999999999999999998653

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.97  E-value=4.6e-10  Score=107.42  Aligned_cols=55  Identities=15%  Similarity=0.399  Sum_probs=42.6

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 018007          284 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQF  338 (362)
Q Consensus       284 ~a~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qV  338 (362)
                      ..+.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus        11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3445688999999999999999999999954445999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.86  E-value=2.7e-09  Score=80.89  Aligned_cols=51  Identities=24%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007          289 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       289 hsiaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      |+.-||+|+..||+.|..|+.+||..  +++++|..+|..||+||+.|++.++
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            57789999999999999999999965  4569999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.81  E-value=1.3e-09  Score=105.70  Aligned_cols=54  Identities=28%  Similarity=0.386  Sum_probs=47.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhhcccC----CCCCCCCHHHHHHHHHHHHHHHHHH
Q 018007          283 GCATHPRSIAERVRRTRISERMRKLQELVP----NMDKQTNTADMLDLAVDYIKDLQNQ  337 (362)
Q Consensus       283 ~~a~~~hsiaERrRRerIneri~~Lr~LVP----~~~Kq~dKAsIL~eAI~YIK~LQ~q  337 (362)
                      +.++.+|+.+||+||+|||+.|.+|+.|||    ...| +||++||..||+|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            344567999999999999999999999999    4556 99999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.65  E-value=2.2e-08  Score=80.79  Aligned_cols=54  Identities=30%  Similarity=0.516  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhcccCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          296 RRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       296 RRerIneri~~Lr~LVP~~~K---q~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      -|..||++|.+|..|||.+..   +++|++||..||+||+.||+.++.+.++.....
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k   59 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK   59 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999999997532   489999999999999999998888876654443

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.48  E-value=5.6e-08  Score=75.84  Aligned_cols=46  Identities=28%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 018007          291 IAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQN  336 (362)
Q Consensus       291 iaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~  336 (362)
                      .-||+|...||+.|..||++||..  +++++|..+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            448999999999999999999965  4469999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.93  E-value=1.1e-05  Score=66.69  Aligned_cols=54  Identities=26%  Similarity=0.393  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018007          293 ERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRA  346 (362)
Q Consensus       293 ERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~  346 (362)
                      ||.|=..||+.|..||.+||..  ++++.|..+|..||+||+.|++.++.-.....
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~   88 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSF   88 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            5677788999999999999964  55699999999999999999998876554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-14
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	6e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-10
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-09
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 297 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCS 351
           R+ I++++ +L++LV   D + + + +L  A+DYIK LQ     L       K +
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLA 55

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 17/69 (24%), Positives = 36/69 (52%)

Query: 281 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 340
            RG      +  E+  R+ I++++ +L++LV   + + N + +L  A+DYI+ LQ+  + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 341 LSDNRAKCK 349
           L       +
Sbjct: 62  LKQENLSLR 70

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 1e-11
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 289 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRA 346
            ++ ER RR  +      L++ +P +  +++     +L  A  YI  +Q + + L     
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69

Query: 347 KCK 349
             +
Sbjct: 70  LLR 72

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 289 RSIAERVRRTRISERMRKLQELV-PNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 347
            +  ER RR  I +    L++ V     ++ + A +LD A +YI+ ++ +  T   +   
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65

Query: 348 CK 349
            K
Sbjct: 66  LK 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 290 SIAERVRRTRISERMRKLQELVPNMDKQTN------TADMLDLAVDYIKDLQNQFKT 340
             AE+ RR R++  + +L  L+P   KQ N       A  ++ A  YI+ LQ    T
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 290 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 347
           +  E+ RR  +   + KL+ LVP      +  T  +L  A  +IK L++  +       +
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65

Query: 348 CK 349
            +
Sbjct: 66  LQ 67

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 290 SIAERVRRTRISERMRKLQELVP-NMDKQTNTADMLDLAVDYIKDLQNQ 337
           ++ ER R ++++E    L+     N +++    ++L  A+ YI+ LQ  
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQAL 65

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 290 SIAERVRRTRISERMRKLQELVPNM-----DKQTNTADMLDLAVDYIKDLQNQ 337
           +  ER RR +I+  + +L +++P+          +   +L  A DYI++L+  
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.43
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.43
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.38
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.31

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=117.37  Aligned_cols=66  Identities=23%  Similarity=0.385  Sum_probs=60.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK  352 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc~~  352 (362)
                      ..|+.+||+||++||+.|..|++|||++..+++|++||.+||+||+.|+.+++.|..+.+.+...-
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~   73 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999999876699999999999999999999999999887766543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=108.45  Aligned_cols=56  Identities=29%  Similarity=0.436  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 018007          297 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK  352 (362)
Q Consensus       297 RerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc~~  352 (362)
                      |++||++|..|++|||++.+++||++||.+||+||++||.+++.|+.++..+.+..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999876699999999999999999999999999998887654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.1e-14  Score=107.50  Aligned_cols=62  Identities=23%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007          288 PRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  349 (362)
Q Consensus       288 ~hsiaERrRRerIneri~~Lr~LVP~~~--Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t  349 (362)
                      .|+.+||+||++||+.|.+|++|||.+.  .+++|++||.+||+||+.|+.+++.|..+...+.
T Consensus         4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999753  2389999999999999999999999988876554

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3e-14  Score=106.33  Aligned_cols=52  Identities=27%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNM------DKQTNTADMLDLAVDYIKDLQNQF  338 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~------~Kq~dKAsIL~eAI~YIK~LQ~qV  338 (362)
                      ..|+++||+||++||+.|..|++|||.+      ..+++|+.||++||+||+.||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999942      334899999999999999999876

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=9.8e-15  Score=110.86  Aligned_cols=53  Identities=21%  Similarity=0.396  Sum_probs=48.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFK  339 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~-Kq~dKAsIL~eAI~YIK~LQ~qVq  339 (362)
                      ..|++.||+||++||+.|..|+.|||.+. ++++|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            45899999999999999999999999864 348999999999999999998764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-13  Score=106.47  Aligned_cols=61  Identities=25%  Similarity=0.446  Sum_probs=54.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018007          288 PRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC  348 (362)
Q Consensus       288 ~hsiaERrRRerIneri~~Lr~LVP~~~-Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~  348 (362)
                      .|+.+||+||++||+.|..|++|||.+. ++++|++||..||+||+.|+.+++.|..+....
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999752 348999999999999999999999998876554

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.4e-13  Score=106.70  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=54.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC  348 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~--Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~  348 (362)
                      ..|+.+||+||++||+.|..|++|||++.  ++++|++||..||+||+.|+++++.|..+.+..
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   71 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL   71 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999753  238999999999999999999999998776543

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-13  Score=102.28  Aligned_cols=52  Identities=25%  Similarity=0.473  Sum_probs=46.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcccCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
Q 018007          287 HPRSIAERVRRTRISERMRKLQELVPNMD-----KQTNTADMLDLAVDYIKDLQNQF  338 (362)
Q Consensus       287 ~~hsiaERrRRerIneri~~Lr~LVP~~~-----Kq~dKAsIL~eAI~YIK~LQ~qV  338 (362)
                      ..|+++||+||++||+.|..|++|||.+.     .+++|+.||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999754     14899999999999999999764