Citrus Sinensis ID: 018017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKHMF
ccHHHHHHHHHHHHHHHcccEEEEEccccEEEEEccHHHHHHHHccccccccccccHHHHHccccccccccccHHHcccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHcccccccccccEEEccccEEEccccEEEEEEcccccccccccccc
cccHHHHHHHHHHHHHcccEEEEEEccccEEEEEccHHHHHHHHHcccccccccccHccccccccccEccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccEEEEEEEcccccccccccccc
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSkaedkppltgrAFRLAfgqsslfastfDRVKKRRVTLSTELNGRllergkvipaRVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDacfwasysvtpfwkrGFWRYQHLCEKLKCLTQDIIQQCQRNcklisgmdhnfdnETAYKRMEAalggsssfdalvsqepsgylqareepcrnimGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARkglgekdqqSVDNMLLLLATIYESarllpagpflqrcslkHGEAFLSLVNSLFdiigdnptpffhkhmf
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFgqsslfastfdrvkkrrvtlstelngrllergkviparVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKHMF
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKHMF
**FICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEML********LTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYK**********************YLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFF*****
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQ*************************LGGSSSFDALVSQEP****QAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFF*KHMF
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKHMF
MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLIS****************AALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKH*F
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MGFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLFDIIGDNPTPFFHKHMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q9HCS2524 Cytochrome P450 4F12 OS=H yes no 0.883 0.610 0.207 1e-07
Q12732495 Averantin oxidoreductase N/A no 0.859 0.628 0.204 5e-07
P29981511 Cytochrome P450 4C1 OS=Bl N/A no 0.839 0.594 0.220 1e-06
Q9HBI6524 Cytochrome P450 4F11 OS=H no no 0.892 0.616 0.236 5e-06
Q9V4T5 531 Probable cytochrome P450 yes no 0.342 0.233 0.297 1e-05
Q9VMS8511 Probable cytochrome P450 no no 0.284 0.201 0.298 2e-05
Q9VL92 526 Cytochrome P450 4e3 OS=Dr no no 0.417 0.287 0.284 5e-05
Q64409503 Cytochrome P450 3A17 OS=C no no 0.845 0.608 0.262 6e-05
Q9VMS9509 Probable cytochrome P450 no no 0.267 0.190 0.295 9e-05
Q27606 526 Cytochrome P450 4e2 OS=Dr no no 0.342 0.235 0.290 0.0001
>sp|Q9HCS2|CP4FC_HUMAN Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=2 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 47/367 (12%)

Query: 17  YGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPP---LTGRAFRLAFGQSSLFASTFD 73
           Y     +WLGP    + +  P  I+ + + +    P   L  R  +   G+  L +   D
Sbjct: 84  YSQGFTIWLGPIIPFIVLCHPDTIRSITNASAAIAPKDNLFIRFLKPWLGEGILLSGG-D 142

Query: 74  RVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQH---MAFS 130
           +  + R  L+   +  +L+    I  +  + ++++   +  +G+ SC  + +H   M   
Sbjct: 143 KWSRHRRMLTPAFHFNILKSYITIFNKSANIMLDKWQHLASEGS-SCLDMFEHISLMTLD 201

Query: 131 LLGATIFGDEFFAWSKATVYEELFMTIAK-------------DACFWASYSVTPFWKRGF 177
            L   IF  +     + + Y    + ++              D  ++ S+          
Sbjct: 202 SLQKCIFSFDSHCQERPSEYIATILELSALVEKRSQHILQHMDFLYYLSHDGR------- 254

Query: 178 WRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALV-S 236
            R+   C  +   T  +I++ +R      G+D  F ++   K ++         D L+ S
Sbjct: 255 -RFHRACRLVHDFTDAVIRERRRTLP-TQGIDDFFKDKAKSKTLDF-------IDVLLLS 305

Query: 237 QEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI--IMARK 294
           ++  G   + E+        MF G+ TTA  +  +L  LA H + QE+   E+  ++  +
Sbjct: 306 KDEDGKALSDEDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDR 365

Query: 295 GLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCS-----LKHGEAFLSLVNSLFDII 349
              E +   +  +  L   + ES RL P  PF+ RC      L  G      +  L DII
Sbjct: 366 DPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDII 425

Query: 350 G--DNPT 354
           G   NPT
Sbjct: 426 GVHHNPT 432
Catalyzes leukotriene B4 omega-hydroxylation and arachidonic acid omega-hydroxylation but with an activity much lower than that of CYP4F2. Catalyzes the hydroxylation of the antihistamine ebastine.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 4EC: .EC: 1
>sp|Q12732|AVNA_ASPPA Averantin oxidoreductase OS=Aspergillus parasiticus GN=avnA PE=1 SV=2 Back     alignment and function description
>sp|P29981|CP4C1_BLADI Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HBI6|CP4FB_HUMAN Cytochrome P450 4F11 OS=Homo sapiens GN=CYP4F11 PE=2 SV=3 Back     alignment and function description
>sp|Q9V4T5|CP4E1_DROME Probable cytochrome P450 4e1 OS=Drosophila melanogaster GN=Cyp4e1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VMS8|C4AC2_DROME Probable cytochrome P450 4ac2 OS=Drosophila melanogaster GN=Cyp4ac2 PE=2 SV=4 Back     alignment and function description
>sp|Q9VL92|CP4E3_DROME Cytochrome P450 4e3 OS=Drosophila melanogaster GN=Cyp4e3 PE=2 SV=1 Back     alignment and function description
>sp|Q64409|CP3AH_CAVPO Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17 PE=2 SV=1 Back     alignment and function description
>sp|Q9VMS9|C4AC1_DROME Probable cytochrome P450 4ac1 OS=Drosophila melanogaster GN=Cyp4ac1 PE=2 SV=1 Back     alignment and function description
>sp|Q27606|CP4E2_DROME Cytochrome P450 4e2 OS=Drosophila melanogaster GN=Cyp4e2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
296087804 568 unnamed protein product [Vitis vinifera] 0.900 0.573 0.682 1e-129
359487151 543 PREDICTED: cytochrome P450 734A1 [Vitis 0.900 0.600 0.682 1e-129
255569165 512 cytochrome P450, putative [Ricinus commu 0.906 0.640 0.615 1e-117
449458696 577 PREDICTED: cytochrome P450 93A2-like [Cu 0.908 0.570 0.576 1e-106
449516968 557 PREDICTED: probable cytochrome P450 554A 0.856 0.556 0.578 1e-104
224073037 507 cytochrome P450 [Populus trichocarpa] gi 0.861 0.615 0.586 1e-104
356517698 562 PREDICTED: cytochrome P450 4F12-like [Gl 0.919 0.592 0.544 1e-103
147843330 1033 hypothetical protein VITISV_022851 [Viti 0.734 0.257 0.642 3e-96
115473701 566 Os07g0644600 [Oryza sativa Japonica Grou 0.895 0.572 0.445 6e-76
125559360 565 hypothetical protein OsI_27078 [Oryza sa 0.895 0.573 0.446 1e-75
>gi|296087804|emb|CBI35060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/331 (68%), Positives = 270/331 (81%), Gaps = 5/331 (1%)

Query: 9   VLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQSSLF 68
           +L+ESH KYGSVVKLWLGPT+LLVSIK+P LIKEML KAEDK PLTGRAF+LAFG SSLF
Sbjct: 88  LLSESHNKYGSVVKLWLGPTQLLVSIKDPVLIKEMLLKAEDKLPLTGRAFQLAFGPSSLF 147

Query: 69  ASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMA 128
           +S+FD+V+KRR  L+ ELNG LL+R  VI  +VVD +ME++H I+GKG + CK++SQHMA
Sbjct: 148 SSSFDKVQKRRELLAAELNGYLLQRANVISTKVVDHVMEKLHAIMGKGTLDCKIVSQHMA 207

Query: 129 FSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHLCEKLK 188
           FS++GAT+FGD F AWSKA+VYEEL M IAKDACFWASY VTPFWK+GFWRYQ LC KLK
Sbjct: 208 FSIMGATLFGDAFLAWSKASVYEELLMMIAKDACFWASYGVTPFWKQGFWRYQRLCMKLK 267

Query: 189 CLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSF-----DALVSQEPSGYL 243
            LTQD I+QC++N KL S MD N ++E +    + A     S      D L SQE +G++
Sbjct: 268 SLTQDGIEQCRQNYKLFSHMDKNSNSEISNPETKNAPEAPFSSGILMPDNLSSQECNGHV 327

Query: 244 QAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQS 303
            AREEPC NIM VMFHG LTTAGL+GNILARLATH +IQ+KIYSEIIM+RKG  ++ QQ+
Sbjct: 328 NAREEPCGNIMRVMFHGCLTTAGLIGNILARLATHPEIQDKIYSEIIMSRKGAQKQKQQN 387

Query: 304 VDNMLLLLATIYESARLLPAGPFLQRCSLKH 334
           VD ML+LLAT+YESARL+PAGP LQRCSLKH
Sbjct: 388 VDKMLVLLATVYESARLMPAGPLLQRCSLKH 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487151|ref|XP_002265899.2| PREDICTED: cytochrome P450 734A1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569165|ref|XP_002525551.1| cytochrome P450, putative [Ricinus communis] gi|223535130|gb|EEF36810.1| cytochrome P450, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449458696|ref|XP_004147083.1| PREDICTED: cytochrome P450 93A2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516968|ref|XP_004165518.1| PREDICTED: probable cytochrome P450 554A1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224073037|ref|XP_002303954.1| cytochrome P450 [Populus trichocarpa] gi|222841386|gb|EEE78933.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517698|ref|XP_003527523.1| PREDICTED: cytochrome P450 4F12-like [Glycine max] Back     alignment and taxonomy information
>gi|147843330|emb|CAN78431.1| hypothetical protein VITISV_022851 [Vitis vinifera] Back     alignment and taxonomy information
>gi|115473701|ref|NP_001060449.1| Os07g0644600 [Oryza sativa Japonica Group] gi|33146730|dbj|BAC79621.1| hypothetical protein [Oryza sativa Japonica Group] gi|50509943|dbj|BAD30264.1| hypothetical protein [Oryza sativa Japonica Group] gi|113611985|dbj|BAF22363.1| Os07g0644600 [Oryza sativa Japonica Group] gi|215768065|dbj|BAH00294.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125559360|gb|EAZ04896.1| hypothetical protein OsI_27078 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
ZFIN|ZDB-GENE-061103-601513 cyp4v8 "cytochrome P450, famil 0.859 0.606 0.205 8.3e-07
UNIPROTKB|Q9HCS2524 CYP4F12 "Cytochrome P450 4F12" 0.906 0.625 0.214 2.4e-06
UNIPROTKB|Q9HBI6524 CYP4F11 "Cytochrome P450 4F11" 0.892 0.616 0.239 5.1e-06
UNIPROTKB|G1R020524 CYP4F11 "Uncharacterized prote 0.895 0.618 0.236 6.7e-06
UNIPROTKB|P08684503 CYP3A4 "Cytochrome P450 3A4" [ 0.220 0.159 0.325 7.5e-06
MGI|MGI:106099504 Cyp3a16 "cytochrome P450, fami 0.867 0.623 0.253 1e-05
MGI|MGI:1930638503 Cyp3a25 "cytochrome P450, fami 0.220 0.159 0.325 1.1e-05
UNIPROTKB|F8W978454 CYP4F11 "Cytochrome P450 4F11" 0.825 0.658 0.234 1.5e-05
UNIPROTKB|Q5RDY6524 DKFZp469M2229 "Putative unchar 0.895 0.618 0.234 1.8e-05
ZFIN|ZDB-GENE-061103-88510 cyp4v7 "cytochrome P450, famil 0.886 0.629 0.2 2.3e-05
ZFIN|ZDB-GENE-061103-601 cyp4v8 "cytochrome P450, family 4, subfamily V, polypeptide 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 143 (55.4 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 69/336 (20%), Positives = 140/336 (41%)

Query:     6 FSEVLAESHEKYGS-VVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFGQ 64
             F +++  + E   S ++K+W+GP   L+ +     ++ +L+            F   +  
Sbjct:    66 FLQLVGYTTEFQNSPLLKIWIGPIPFLI-LFHAETVETVLNNPVHIDKAYAYQFLHPWLG 124

Query:    65 SSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMIS 124
             + L  ST D+ ++RR  L+   +  +L     +     + L+E++    GKG  +C    
Sbjct:   125 TGLLTSTGDKWRRRRKMLTPTFHFSILTEFLEVMNEQAEVLIEKLEKQAGKGPFNCFSHI 184

Query:   125 QHMAFSLLGATIFGDEFFAWSK------ATVYE--ELFMTIAKDACFWASYSVTPFWKRG 176
                A  ++  T  G   +A S        TVY   ++     +   +W  + V  +   G
Sbjct:   185 TLCALDIICETAMGKRIYAQSNYDSEYVRTVYRMSDIITRRQRMPWYWPDF-VYNYVGEG 243

Query:   177 FWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALV- 235
                 + L + L   T+ +I +     + +S ++ + +++   ++  A L      D L+ 
Sbjct:   244 REHNRSL-KILHSFTESVINE---RAEYLSYVESDSESDQGMRKRRAFL------DMLLK 293

Query:   236 SQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKG 295
             +++  G +   ++    +   MF G+ TTA  +   +  L +H ++Q K   E+     G
Sbjct:   294 TKDEDGKMLTHKDIQEEVDTFMFEGHDTTAAAMNWAIHLLGSHPEVQRKAQQELFEVF-G 352

Query:   296 LGEKDQQSVD--NMLLLLATIYESARLLPAGPFLQR 329
               E+   + D   +  L   I ES RL P+ PF  R
Sbjct:   353 ESERPVNTEDLKKLRYLECVIKESLRLFPSVPFFAR 388
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005506 "iron ion binding" evidence=IEA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0046872 "metal ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0004497 "monooxygenase activity" evidence=IEA
UNIPROTKB|Q9HCS2 CYP4F12 "Cytochrome P450 4F12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HBI6 CYP4F11 "Cytochrome P450 4F11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G1R020 CYP4F11 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)] Back     alignment and assigned GO terms
UNIPROTKB|P08684 CYP3A4 "Cytochrome P450 3A4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:106099 Cyp3a16 "cytochrome P450, family 3, subfamily a, polypeptide 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1930638 Cyp3a25 "cytochrome P450, family 3, subfamily a, polypeptide 25" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F8W978 CYP4F11 "Cytochrome P450 4F11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RDY6 DKFZp469M2229 "Putative uncharacterized protein DKFZp469M2229" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061103-88 cyp4v7 "cytochrome P450, family 4, subfamily V, polypeptide 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
pfam00067461 pfam00067, p450, Cytochrome P450 2e-17
COG2124411 COG2124, CypX, Cytochrome P450 [Secondary metaboli 0.004
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450 Back     alignment and domain information 
 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 40/345 (11%)

Query: 8   EVLAESHEKYGSVVKLWLGPTKLLV-----SIKEPALIKE-MLSKAEDKPPLTGRAFRLA 61
            V  +  +KYG + +L+LGP  ++V     ++KE  LIK+          P    +    
Sbjct: 24  SVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKE-VLIKKGEEFSGRPDEPWFATSRGPF 82

Query: 62  FGQSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIP--ARVVDCLMERIHD-ILGKGNI 118
            G+  +FA+   R ++ R  L+         +    P        L+E++       G I
Sbjct: 83  LGKGIVFANG-PRWRQLRRFLTPTF--TSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVI 139

Query: 119 SCKMISQHMAFSLLGATIFGDEFFAW--SKATVYEELF-----MTIAKDACFWASYSVTP 171
               +    A +++ + +FG+ F +    K     +       +  +        + +  
Sbjct: 140 DITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILK 199

Query: 172 FWKRGFWR-YQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETA-YKRMEAALGGSS 229
           ++     R  +   +K+K L   +I++ +    L S      D   A     E   G   
Sbjct: 200 YFPGPHGRKLKRARKKIKDLLDKLIEERRET--LDSAKKSPRDFLDALLLAKEEEDGSKL 257

Query: 230 SFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI 289
           + + L                  ++ + F G  TT+  +   L  LA H ++QEK+  EI
Sbjct: 258 TDEELR---------------ATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEI 302

Query: 290 IMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPF-LQRCSLK 333
                         + NM  L A I E+ RL P  P  L R   K
Sbjct: 303 DEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTK 347

Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures. Length = 461
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
KOG0156489 consensus Cytochrome P450 CYP2 subfamily [Secondar 100.0
KOG0158499 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subf 100.0
PLN02738 633 carotene beta-ring hydroxylase 100.0
PTZ00404482 cytochrome P450; Provisional 100.0
PLN02971543 tryptophan N-hydroxylase 100.0
PLN02687517 flavonoid 3'-monooxygenase 100.0
PLN02183516 ferulate 5-hydroxylase 100.0
KOG0159519 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 100.0
PLN00110504 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional 100.0
PLN02290516 cytokinin trans-hydroxylase 100.0
PLN03234499 cytochrome P450 83B1; Provisional 100.0
PLN02500490 cytochrome P450 90B1 100.0
PLN03112514 cytochrome P450 family protein; Provisional 100.0
PLN02394503 trans-cinnamate 4-monooxygenase 100.0
PLN00168519 Cytochrome P450; Provisional 100.0
PLN02936489 epsilon-ring hydroxylase 100.0
PLN02966502 cytochrome P450 83A1 100.0
PF00067463 p450: Cytochrome P450 p450 superfamily signature b 100.0
PLN02655466 ent-kaurene oxidase 100.0
PLN02774463 brassinosteroid-6-oxidase 100.0
PLN02196463 abscisic acid 8'-hydroxylase 100.0
PLN02169500 fatty acid (omega-1)-hydroxylase/midchain alkane h 100.0
PLN03195516 fatty acid omega-hydroxylase; Provisional 100.0
KOG0157497 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfami 100.0
PLN03141452 3-epi-6-deoxocathasterone 23-monooxygenase; Provis 100.0
PLN03018534 homomethionine N-hydroxylase 100.0
PLN02302490 ent-kaurenoic acid oxidase 100.0
PLN02426502 cytochrome P450, family 94, subfamily C protein 100.0
PLN02987472 Cytochrome P450, family 90, subfamily A 100.0
KOG0684486 consensus Cytochrome P450 [Secondary metabolites b 100.0
PLN02648480 allene oxide synthase 100.0
COG2124411 CypX Cytochrome P450 [Secondary metabolites biosyn 100.0
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-56  Score=401.16  Aligned_cols=336  Identities=18%  Similarity=0.162  Sum_probs=274.8

Q ss_pred             chHHHHHHHHHHhhCCeeEEeecCCccEEEecChHHHHHHHHhCCCCCCCccc---cceecc-CCCceeee-cchhHHHh
Q 018017            4 ICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGR---AFRLAF-GQSSLFAS-TFDRVKKR   78 (362)
Q Consensus         4 ~~~~~~~~~~~~~yG~v~~~~~~~~~~~v~v~~~~~i~~i~~~~~~~~~~~~~---~~~~~~-g~~~~~~~-~~~~w~~~   78 (362)
                      ..+|..+++|+++|||+|.+|+|+.+ +|||+|++.++|++.+++..|..++.   ....+. |..|++++ .|+.|+.+
T Consensus        46 ~~~h~~~~~ls~~yGpi~tl~lG~~~-~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~~~~i~~a~yG~~Wr~~  124 (489)
T KOG0156|consen   46 LPPHRSFRKLSKKYGPVFTLRLGSVP-VVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYGGKGIVFAPYGDYWREM  124 (489)
T ss_pred             CchhHHHHHHHHHhCCeEEEEecCce-EEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCCCCceEeCCCcHHHHHH
Confidence            35899999999999999999999987 78899999999999998888866554   223333 66888888 68999999


Q ss_pred             Hhhhc-ccCcHHHHhhcCCcHHHHHHHHHHHHHHHhCC-CCccHHHhHHHHHHHHHHHhhcCCCCCccc--chhHHHHHH
Q 018017           79 RVTLS-TELNGRLLERGKVIPARVVDCLMERIHDILGK-GNISCKMISQHMAFSLLGATIFGDEFFAWS--KATVYEELF  154 (362)
Q Consensus        79 R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~fG~~~~~~~--~~~~~~~~~  154 (362)
                      ||+.. ..++...++.....-.++++.+++.+.+ ... .+||+...+..++.+++++++||.++...+  ....+.+++
T Consensus       125 Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf~~~~~~~~~~~~~l~  203 (489)
T KOG0156|consen  125 RRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRMLFGRRFEEEDEEEFLELKELV  203 (489)
T ss_pred             HHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHHhCCccccCCchHHHHHHHHH
Confidence            99776 5678888887776667888888888887 322 689999999999999999999999996532  123366666


Q ss_pred             HHHHhhccccccccccc-c--cch---hh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHhhhhhcCC
Q 018017          155 MTIAKDACFWASYSVTP-F--WKR---GF-WRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGG  227 (362)
Q Consensus       155 ~~~~~~~~~~~~~~~~p-~--~~~---~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (362)
                      ..............++| +  |.+   +. ++......++..+++.+|+++++.+                   .. +..
T Consensus       204 ~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-------------------~~-~~~  263 (489)
T KOG0156|consen  204 EESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-------------------GD-EEG  263 (489)
T ss_pred             HHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------cc-CCC
Confidence            66555544444444445 2  222   23 4455555668999999999998531                   11 222


Q ss_pred             CchHHHhhcC-C-CCCCCCCchhHHHHHHHHHHhccchhhhHHHHHHHHHhhChHHHHHHHHHHHHHHcCCCCCChhhhh
Q 018017          228 SSSFDALVSQ-E-PSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVD  305 (362)
Q Consensus       228 ~d~l~~ll~~-~-~~~~~~~~~~i~~~~~~l~~ag~~tt~~~l~~~l~~L~~~p~~q~klr~Ei~~~~~~~~~~~~~~l~  305 (362)
                      .|+++.+|.. . ++...+++++|...+.++++||+|||++|+.|++.+|++||++|+|+++||++++|.++.++.+|+.
T Consensus       264 ~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~  343 (489)
T KOG0156|consen  264 RDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLP  343 (489)
T ss_pred             CcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhc
Confidence            8999999982 2 2222389999999999999999999999999999999999999999999999999998889999999


Q ss_pred             hcHhHHHHHHHHhccCCCCcc-cccccccccceec-------eeeeechhhccCCCCCCCCCCCC
Q 018017          306 NMLLLLATIYESARLLPAGPF-LQRCSLKHGEAFL-------SLVNSLFDIIGDNPTPFFHKHMF  362 (362)
Q Consensus       306 ~lpyl~a~i~E~lRl~p~~~~-~~r~~~~~d~~i~-------t~v~~~~~~~~~d~~~~~~P~~F  362 (362)
                      +||||+|||+|++|++|++|. ++|.+ .+|+.|+       |.|++|.|++||||++|+||++|
T Consensus       344 ~lpYL~Avi~E~~Rl~p~~Pl~~ph~~-~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF  407 (489)
T KOG0156|consen  344 KLPYLKAVIKETLRLHPPLPLLLPRET-TEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEF  407 (489)
T ss_pred             cCHHHHHHHHHHHhcCCCccccccccc-cCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCcccc
Confidence            999999999999999999999 78975 7799997       99999999999999999999998

>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02738 carotene beta-ring hydroxylase Back     alignment and domain information
>PTZ00404 cytochrome P450; Provisional Back     alignment and domain information
>PLN02971 tryptophan N-hydroxylase Back     alignment and domain information
>PLN02687 flavonoid 3'-monooxygenase Back     alignment and domain information
>PLN02183 ferulate 5-hydroxylase Back     alignment and domain information
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional Back     alignment and domain information
>PLN02290 cytokinin trans-hydroxylase Back     alignment and domain information
>PLN03234 cytochrome P450 83B1; Provisional Back     alignment and domain information
>PLN02500 cytochrome P450 90B1 Back     alignment and domain information
>PLN03112 cytochrome P450 family protein; Provisional Back     alignment and domain information
>PLN02394 trans-cinnamate 4-monooxygenase Back     alignment and domain information
>PLN00168 Cytochrome P450; Provisional Back     alignment and domain information
>PLN02936 epsilon-ring hydroxylase Back     alignment and domain information
>PLN02966 cytochrome P450 83A1 Back     alignment and domain information
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry Back     alignment and domain information
>PLN02655 ent-kaurene oxidase Back     alignment and domain information
>PLN02774 brassinosteroid-6-oxidase Back     alignment and domain information
>PLN02196 abscisic acid 8'-hydroxylase Back     alignment and domain information
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase Back     alignment and domain information
>PLN03195 fatty acid omega-hydroxylase; Provisional Back     alignment and domain information
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional Back     alignment and domain information
>PLN03018 homomethionine N-hydroxylase Back     alignment and domain information
>PLN02302 ent-kaurenoic acid oxidase Back     alignment and domain information
>PLN02426 cytochrome P450, family 94, subfamily C protein Back     alignment and domain information
>PLN02987 Cytochrome P450, family 90, subfamily A Back     alignment and domain information
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02648 allene oxide synthase Back     alignment and domain information
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1tqn_A 486 Crystal Structure Of Human Microsomal P450 3a4 Leng 1e-05
3ua1_A 487 Crystal Structure Of The Cytochrome P4503a4-Bromoer 1e-05
1w0e_A 485 Crystal Structure Of Human Cytochrome P450 3a4 Leng 1e-05
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4 Length = 486 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 37/357 (10%)
Query: 2   GFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAF-RL 60
           GF  F     E H+KYG V   + G   +L +I +P +IK +L K         R F  +
Sbjct: 35  GFCMFD---MECHKKYGKVWGFYDGQQPVL-AITDPDMIKTVLVKECYSVFTNRRPFGPV 90
Query: 61  AFGQSSLFASTFDRVKKRRVTLS-TELNGRLLERGKVIPARVVDCLMERIHDILGKGN-I 118
            F +S++  +  +  K+ R  LS T  +G+L E   +I A+  D L+  +      G  +
Sbjct: 91  GFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPII-AQYGDVLVRNLRREAETGKPV 149
Query: 119 SCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDAC-------FWASYSVTP 171
           + K +    +  ++ +T FG    + +     ++ F+   K          F+ S +V P
Sbjct: 150 TLKDVFGAYSMDVITSTSFGVNIDSLNNP---QDPFVENTKKLLRFDFLDPFFLSITVFP 206
Query: 172 FWKRGFWRYQHLCEKLKCLTQDIIQQCQR--NCKLISGMDHNFDNETAYKRMEAALGGSS 229
           F         ++C   + +T  + +  +R    +L     H  D       ++  +   +
Sbjct: 207 FLI-PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD------FLQLMIDSQN 259
Query: 230 SFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI 289
           S +     E    L   E   ++I+  +F GY TT+ ++  I+  LATH D+Q+K+  EI
Sbjct: 260 SKET----ESHKALSDLELVAQSII-FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEI 314
Query: 290 IMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLF 346
                        +V  M  L   + E+ RL P    L+R   K  E     +N +F
Sbjct: 315 DAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVE-----INGMF 366
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome P4503a4-Bromoergocryptine Complex Length = 487 Back     alignment and structure
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4 Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3s79_A503 Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD 2e-22
3n9y_A487 Cholesterol SIDE-chain cleavage enzyme; cytochrome 4e-21
3i3k_A461 Lanosterol 14-alpha demethylase; cytochrome P450, 2e-19
3k9v_A482 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho 6e-19
3dbg_A467 Putative cytochrome P450; cytochrome P450 oxidored 4e-18
2ij2_A 470 Cytochrome P450 BM3; monoxygenase, heme binding pr 2e-16
2ve3_A444 Putative cytochrome P450 120; oxidoreductase, mono 5e-16
3mdm_A456 Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th 1e-15
3dax_A 491 Cytochrome P450 7A1; cholesterol, cholesterol 7-al 1e-15
3gw9_A450 Sterol 14alpha-demethylase; CYP51, cytochrome P450 3e-15
2cib_A455 Cytochrome P450 51; heme, heme lipid synthesis, me 3e-15
3b6h_A 498 Prostacyclin synthase; enzyme-inhibitor complex, C 6e-15
1izo_A417 P450bsbeta, cytochrome P450 152A1; heme protein, p 9e-12
3dan_A473 Cytochrome P450 74A2; AOS heme cytochrome P450 str 8e-11
3dsk_A495 Cytochrome P450 74A, chloroplast; P450 fold, fatty 6e-10
3b98_A 475 Prostaglandin I2 synthase; prostacyclin synthase, 4e-09
3awm_A415 Fatty acid alpha-hydroxylase; cytochrome P450, per 8e-09
1n97_A389 CYP175A1; electron transport; HET: SRT HEM; 1.80A 8e-09
3nxu_A485 Cytochrome P450 3A4; alpha beta protein, cytochrom 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3qz1_A496 Steroid 21-hydroxylase; P450 monooxygenase, oxidor 6e-04
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* Length = 503 Back     alignment and structure
 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 45/337 (13%), Positives = 109/337 (32%), Gaps = 36/337 (10%)

Query: 6   FSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFRLAFG-- 63
                   +  YG  +++W+   +  + I + + +  ++           +      G  
Sbjct: 70  IGSACNYYNRVYGEFMRVWISG-EETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMH 128

Query: 64  -QSSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGN-ISCK 121
            +  +F +  +  K  R      L+G  L R   + A  +   ++R+ ++  +   +   
Sbjct: 129 EKGIIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVL 188

Query: 122 MISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQ 181
            + + +                 +     +  F              +       + +Y+
Sbjct: 189 TLLRRVMLDTSNTLFLRIPLDESAIVVKIQGYFDAWQA---LLIKPDIFFKISWLYKKYE 245

Query: 182 HLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSG 241
              + LK   + +I + +R              E   +              L+  E  G
Sbjct: 246 KSVKDLKDAIEVLIAEKRRR----------ISTEEKLEECMDFA------TELILAEKRG 289

Query: 242 YL---QAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGE 298
            L      +     I+ ++     T +  +  +L  +A H +++E I  EI   +  +GE
Sbjct: 290 DLTRENVNQC----ILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEI---QTVIGE 342

Query: 299 KD--QQSVDNMLLLLATIYESARLLPAGPFLQRCSLK 333
           +D     +  + ++   IYES R  P    + R +L+
Sbjct: 343 RDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALE 379
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A* Length = 487 Back     alignment and structure
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Length = 482 Back     alignment and structure
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A* Length = 467 Back     alignment and structure
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ... Length = 470 Back     alignment and structure
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A* Length = 444 Back     alignment and structure
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* Length = 456 Back     alignment and structure
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A* Length = 491 Back     alignment and structure
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A* Length = 450 Back     alignment and structure
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A* Length = 455 Back     alignment and structure
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* Length = 498 Back     alignment and structure
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A* Length = 417 Back     alignment and structure
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* Length = 473 Back     alignment and structure
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A* Length = 495 Back     alignment and structure
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A* Length = 475 Back     alignment and structure
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A* Length = 415 Back     alignment and structure
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A* Length = 389 Back     alignment and structure
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A* Length = 485 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus} Length = 496 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3k9v_A482 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho 100.0
3mdm_A456 Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th 100.0
3n9y_A487 Cholesterol SIDE-chain cleavage enzyme; cytochrome 100.0
3nxu_A485 Cytochrome P450 3A4; alpha beta protein, cytochrom 100.0
3ld6_A461 Lanosterol 14-alpha demethylase; cytochrome P450, 100.0
1r9o_A477 Cytochrome P450 2C9; monooxygenase, drug metaboliz 100.0
1po5_A476 Cytochrome P450 2B4; oxidoreductase, membrane prot 100.0
2fdv_A476 Cytochrome P450 2A6; CYP2A6, monooxygenase, drug m 100.0
3qz1_A496 Steroid 21-hydroxylase; P450 monooxygenase, oxidor 100.0
3pm0_A 507 Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase 100.0
3czh_A481 Cytochrome P450 2R1; vitamin D, vitamin S 25-hydro 100.0
3swz_A494 Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro 100.0
3e6i_A476 CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono 100.0
2hi4_A495 Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m 100.0
2ve3_A444 Putative cytochrome P450 120; oxidoreductase, mono 100.0
3tbg_A479 Cytochrome P450 2D6; monooxygenase, thioridazine, 100.0
2ij2_A470 Cytochrome P450 BM3; monoxygenase, heme binding pr 100.0
2cib_A455 Cytochrome P450 51; heme, heme lipid synthesis, me 100.0
3gw9_A450 Sterol 14alpha-demethylase; CYP51, cytochrome P450 100.0
3dbg_A467 Putative cytochrome P450; cytochrome P450 oxidored 100.0
3s79_A503 Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD 100.0
3i3k_A461 Lanosterol 14-alpha demethylase; cytochrome P450, 100.0
2wm5_A435 CYP124, putative cytochrome P450 124; metal-bindin 100.0
1cpt_A428 Cytochrome P450-TERP; oxidoreductase(oxygenase); H 100.0
3ejb_B404 Biotin biosynthesis cytochrome P450-like enzyme; p 100.0
2xkr_A398 CYP142, putative cytochrome P450 142; oxidoreducta 100.0
3aba_A403 Cytochrome P450; oxidoreductase, heme, monooxygena 100.0
2cd8_A436 Cytochrome P450 monooxygenase; oxidoreductase, PIK 100.0
1z8o_A404 6-deoxyerythronolide B hydroxylase; heme, CYP, ery 100.0
2y5n_A417 MYCG, P-450-like protein; oxidoreductase, mycinami 100.0
3a4g_A411 Vitamin D hydroxylase; cytochrome P450, hemoprotei 100.0
2z3t_A425 Cytochrome P450; monoxygenase, oxydoreductase, hem 100.0
3tkt_A450 Cytochrome P450; aromatic hydrocarbon binding of P 100.0
2zbx_A412 Cytochrome P450-SU1; beta prism, heme, iron, metal 100.0
1izo_A417 P450bsbeta, cytochrome P450 152A1; heme protein, p 100.0
1q5d_A419 P450 epoxidase; cytochrome P450, epothilone, oxydo 100.0
4fb2_A398 P450CIN; heme, monooxygenase, cindoxin, oxidoreduc 100.0
3tyw_A417 Putative cytochrome P450; P450 monooxygenase, oxid 100.0
1odo_A408 Putative cytochrome P450 154A1; P450 monooxygenase 100.0
3v8d_A 491 Cholesterol 7-alpha-monooxygenase; cytochrome, oxi 100.0
2z36_A413 MOXA, cytochrome P450 type compactin 3'',4''- hydr 100.0
1jfb_A404 Nitric-oxide reductase cytochrome P450 55A1; cytoc 100.0
2jjn_A411 Cytochrome P450 113A1; oxidoreductase, iron, heme, 100.0
3dax_A 491 Cytochrome P450 7A1; cholesterol, cholesterol 7-al 100.0
2xbk_A404 PIMD protein; epoxidation, oxidoreductase; HET: HE 100.0
3buj_A397 CALO2; heme, iron, metal-binding, monooxygenase, o 100.0
3awm_A415 Fatty acid alpha-hydroxylase; cytochrome P450, per 100.0
1ued_A406 P450 OXYC, P450 monooxygenase; cytochrome P450 van 100.0
2dkk_A411 Cytochrome P450; CYP158A1, INHI oxidoreductase; HE 100.0
1gwi_A411 CYP154C1, cytochrome P450 154C1; oxidoreductase, m 100.0
3abb_A408 CYP105D6, cytochrome P450 hydroxylase; oxidoreduct 100.0
3r9b_A418 Cytochrome P450 164A2; monooxygenase, oxidoreducta 100.0
3nc3_A441 Cytochrome P450 CYPX; cytochrome P450 oxidase, HAE 100.0
2zwu_A415 Camphor 5-monooxygenase; P450CAM, camphor-hydroxyl 100.0
3ivy_A433 Cytochrome P450 CYP125; cholesterol, monooxygenase 100.0
1s1f_A406 Putative cytochrome P450; cytochrome P450 oxidored 100.0
2uuq_A414 CYP130, cytochrome P450 130; iron, heme, monooxyge 100.0
3mgx_A415 Putative P450 monooxygenase; cytochrome P450 oxida 100.0
3b6h_A 498 Prostacyclin synthase; enzyme-inhibitor complex, C 100.0
1n97_A389 CYP175A1; electron transport; HET: SRT HEM; 1.80A 100.0
3lxh_A421 Cytochrome P450; heme, iron, metal-binding, monoox 100.0
3oft_A396 Cytochrome P450, CYP101C1; oxidoreductase; HET: HE 100.0
1lfk_A398 OXYB, P450 monooxygenase; oxidative phenol couplin 100.0
3oo3_A384 OXY protein; cytochrome P450, monooxygenase, PCD-t 100.0
3rwl_A426 Cytochrome P450 alkane hydroxylase 1 CYP153A7; P45 100.0
1n40_A396 P450 MT2, cytochrome P450 121; heme binding, oxyge 100.0
3dsk_A495 Cytochrome P450 74A, chloroplast; P450 fold, fatty 100.0
3b4x_A367 367AA long hypothetical cytochrome P450; HEM prote 100.0
3b98_A475 Prostaglandin I2 synthase; prostacyclin synthase, 100.0
2rfb_A343 Cytochrome P450; heme, iron, metal-binding, monoox 100.0
3p3o_A416 Cytochrome P450; monooxygenase, oxidoreductase; HE 100.0
3dan_A473 Cytochrome P450 74A2; AOS heme cytochrome P450 str 100.0
2wiy_A394 XPLA-heme, cytochrome P450-like protein XPLA; CYT- 100.0
1io7_A368 Cytochrome P450 CYP119; thermophilic, cytochromo P 100.0
4dnj_A412 Putative cytochrome P450; oxidoreductase; HET: HEM 100.0
4dxy_A417 Cytochrome P450, CYP101D2; cytochrome P450 mutant, 100.0
2yjn_B381 Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; 99.94
1whv_A100 Poly(A)-specific ribonuclease; RNA recognition mot 80.78
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-52  Score=385.92  Aligned_cols=329  Identities=17%  Similarity=0.190  Sum_probs=263.0

Q ss_pred             chHHHHHHHHHHhhCCeeEEeecCCccEEEecChHHHHHHHHhCCCCCCCccc-----cceec-cCCCceeeecchhHHH
Q 018017            4 ICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGR-----AFRLA-FGQSSLFASTFDRVKK   77 (362)
Q Consensus         4 ~~~~~~~~~~~~~yG~v~~~~~~~~~~~v~v~~~~~i~~i~~~~~~~~~~~~~-----~~~~~-~g~~~~~~~~~~~w~~   77 (362)
                      ++++..+.+|+++|||||++++|+.+ +|+++||+++++|+.++ ..++....     .+... .+..|++..+|+.|++
T Consensus        48 ~~~~~~~~~l~~~YG~i~~~~~g~~~-~vvv~dp~~~~~il~~~-~~~~~r~~~~~~~~~~~~~~~~~~l~~~~g~~w~~  125 (482)
T 3k9v_A           48 KKQHDTLAEYHKKYGQIFRMKLGSFD-SVHLGSPSLLEALYRTE-SAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQR  125 (482)
T ss_dssp             GGHHHHHHHHHHHHCSEEEEEETTEE-EEEECSHHHHHHHHHTC-CSSCCCCCCHHHHHHHHHHTCCCCTTTCCHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCEEEEccCCCC-EEEEcCHHHHHHHHHhc-CCCCCCCCchHHHHHHHhcCCCCCceeCCCchHHH
Confidence            47889999999999999999999866 68899999999999874 44543322     11111 2236888889999999


Q ss_pred             hHhhhcccC-cHHHHhhcCCcHHHHHHHHHHHHHHHh--CCCCccHHHhHHHHHHHHHHHhhcCCCCCcccc-----hhH
Q 018017           78 RRVTLSTEL-NGRLLERGKVIPARVVDCLMERIHDIL--GKGNISCKMISQHMAFSLLGATIFGDEFFAWSK-----ATV  149 (362)
Q Consensus        78 ~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~fG~~~~~~~~-----~~~  149 (362)
                      +||.+.+.| +.+.+..+.+.+.+.++.+++.+.+..  +++++|+.+++..+++++++.++||.+++..++     ...
T Consensus       126 ~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~  205 (482)
T 3k9v_A          126 VRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLYEKRFGLLQKETEEEALT  205 (482)
T ss_dssp             HHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHH
T ss_pred             HHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccccCCCCCCcchHHHH
Confidence            999999875 788899999999999999999998764  345799999999999999999999999865432     123


Q ss_pred             HHHHHHHHHhhccccccccccc-ccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHhhhh
Q 018017          150 YEELFMTIAKDACFWASYSVTP-FWK-----RGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEA  223 (362)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~p-~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (362)
                      +...+..+....   .....+| ++.     +..++..+..+.+.+++.++|+++.+..                    .
T Consensus       206 ~~~~~~~~~~~~---~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~--------------------~  262 (482)
T 3k9v_A          206 FITAIKTMMSTF---GKMMVTPVELHKRLNTKVWQAHTLAWDTIFKSVKPCIDNRLQRY--------------------S  262 (482)
T ss_dssp             HHHHHHHHHTTG---GGGSSSCHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------T
T ss_pred             HHHHHHHHHHHH---HHHHhhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------c
Confidence            444443333222   1122223 111     1223445566677777888888877431                    1


Q ss_pred             hcCCCchHHHhhcCCCCCCCCCchhHHHHHHHHHHhccchhhhHHHHHHHHHhhChHHHHHHHHHHHHHHcCCCCCChhh
Q 018017          224 ALGGSSSFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQS  303 (362)
Q Consensus       224 ~~~~~d~l~~ll~~~~~~~~~~~~~i~~~~~~l~~ag~~tt~~~l~~~l~~L~~~p~~q~klr~Ei~~~~~~~~~~~~~~  303 (362)
                      .....|++..++..    ..++++++.+++..+++||+|||+++++|++++|++||++|+||++|+++++++++.+++++
T Consensus       263 ~~~~~d~l~~ll~~----~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~  338 (482)
T 3k9v_A          263 QQPGADFLCDIYQQ----DHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAED  338 (482)
T ss_dssp             TCTTSCHHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCTTCCCCGGG
T ss_pred             cCCchHHHHHHHhc----cCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence            23346888888852    34899999999999999999999999999999999999999999999999999888899999


Q ss_pred             hhhcHhHHHHHHHHhccCCCCcccccccccccceec-------eeeeechhhccCCCCCCCCCCCC
Q 018017          304 VDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFL-------SLVNSLFDIIGDNPTPFFHKHMF  362 (362)
Q Consensus       304 l~~lpyl~a~i~E~lRl~p~~~~~~r~~~~~d~~i~-------t~v~~~~~~~~~d~~~~~~P~~F  362 (362)
                      +.+||||+|||+|+||++|++|.++|.+ .+|++++       |.|+++.+++||||++|+||++|
T Consensus       339 l~~lpyl~avi~E~lRl~p~~~~~~r~~-~~d~~~~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F  403 (482)
T 3k9v_A          339 LRNMPYLKACLKESMRLTPSVPFTTRTL-DKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKF  403 (482)
T ss_dssp             GGGCHHHHHHHHHHHHHSCSCCEEEEEC-SSCEEETTEEECTTCEEEEECSGGGGCTTTCSSTTSC
T ss_pred             HhhCHHHHHHHHHHhhcCCCCcCccccc-CCceeeCCEEECCCCEEEEccccccCCCccCCCcCcc
Confidence            9999999999999999999999989986 6688887       99999999999999999999998
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A* Back     alignment and structure
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A* Back     alignment and structure
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A* Back     alignment and structure
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A* Back     alignment and structure
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A* Back     alignment and structure
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A* Back     alignment and structure
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A* Back     alignment and structure
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus} Back     alignment and structure
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens} Back     alignment and structure
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A* Back     alignment and structure
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A* Back     alignment and structure
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A* Back     alignment and structure
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens} Back     alignment and structure
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A* Back     alignment and structure
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A* Back     alignment and structure
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ... Back     alignment and structure
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A* Back     alignment and structure
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A* Back     alignment and structure
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A* Back     alignment and structure
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A* Back     alignment and structure
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A* Back     alignment and structure
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1 Back     alignment and structure
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B* Back     alignment and structure
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A* Back     alignment and structure
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A* Back     alignment and structure
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A* Back     alignment and structure
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A* Back     alignment and structure
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A* Back     alignment and structure
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A* Back     alignment and structure
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} Back     alignment and structure
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A* Back     alignment and structure
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A* Back     alignment and structure
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A* Back     alignment and structure
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A* Back     alignment and structure
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A* Back     alignment and structure
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1 Back     alignment and structure
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A* Back     alignment and structure
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena} Back     alignment and structure
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A* Back     alignment and structure
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A* Back     alignment and structure
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A* Back     alignment and structure
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A* Back     alignment and structure
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora} Back     alignment and structure
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A* Back     alignment and structure
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1 Back     alignment and structure
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A* Back     alignment and structure
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1 Back     alignment and structure
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis} Back     alignment and structure
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A* Back     alignment and structure
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A* Back     alignment and structure
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ... Back     alignment and structure
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A* Back     alignment and structure
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A* Back     alignment and structure
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A* Back     alignment and structure
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina} Back     alignment and structure
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* Back     alignment and structure
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A* Back     alignment and structure
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A* Back     alignment and structure
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A* Back     alignment and structure
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A* Back     alignment and structure
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A* Back     alignment and structure
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida} Back     alignment and structure
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A* Back     alignment and structure
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A* Back     alignment and structure
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A* Back     alignment and structure
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A* Back     alignment and structure
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A* Back     alignment and structure
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A* Back     alignment and structure
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* Back     alignment and structure
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A* Back     alignment and structure
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A* Back     alignment and structure
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A* Back     alignment and structure
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A* Back     alignment and structure
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1tqna_472 a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Huma 9e-16
d1po5a_465 a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabb 1e-14
d3czha1463 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2 2e-11
d2ij2a1453 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus 2e-11
d1r9oa_467 a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Huma 8e-10
d2ciba1445 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-stero 2e-08
d1qxoa_388 d.258.1.1 (A:) Chorismate synthase, AroC {Streptoc 0.004
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Length = 472 Back     information, alignment and structure

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Mammalian cytochrome P450 3a4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 9e-16
 Identities = 65/330 (19%), Positives = 115/330 (34%), Gaps = 9/330 (2%)

Query: 6   FSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAFR-LAFGQ 64
           F     E H+KYG V   + G   +L  I +P +IK +L K         R F  + F +
Sbjct: 30  FCMFDMECHKKYGKVWGFYDGQQPVLA-ITDPDMIKTVLVKECYSVFTNRRPFGPVGFMK 88

Query: 65  SSLFASTFDRVKKRRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGN-ISCKMI 123
           S++  +  +  K+ R  LS       L+    I A+  D L+  +      G  ++ K +
Sbjct: 89  SAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDV 148

Query: 124 SQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDACFWASYSVTPFWKRGFWRYQHL 183
               +  ++ +T FG    +               ++      +     +      +  L
Sbjct: 149 FGAYSMDVITSTSFGVNIDSL------NNPQDPFVENTKKLLRFDFLDPFFLSITVFPFL 202

Query: 184 CEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYL 243
              L+ L   +  +   N    S            ++                +  S   
Sbjct: 203 IPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKA 262

Query: 244 QAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQS 303
            +  E     +  +F GY TT+ ++  I+  LATH D+Q+K+  EI             +
Sbjct: 263 LSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDT 322

Query: 304 VDNMLLLLATIYESARLLPAGPFLQRCSLK 333
           V  M  L   + E+ RL P    L+R   K
Sbjct: 323 VLQMEYLDMVVNETLRLFPIAMRLERVCKK 352
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 465 Back     information, alignment and structure
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 463 Back     information, alignment and structure
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 453 Back     information, alignment and structure
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} Length = 467 Back     information, alignment and structure
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 445 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d2ij2a1453 Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 100.0
d2ciba1445 Cytochrome p450 14 alpha-sterol demethylase (cyp51 100.0
d1tqna_472 Mammalian cytochrome P450 3a4 {Human (Homo sapiens 100.0
d1r9oa_467 Mammalian cytochrome p450 2c9 {Human (Homo sapiens 100.0
d3czha1463 Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie 100.0
d1izoa_411 Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis 100.0
d1po5a_465 Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus 100.0
d1n97a_385 Cyp175a1 {Thermus thermophilus [TaxId: 274]} 100.0
d1gwia_403 Cyp154c1 monooxygenase {Streptomyces coelicolor [T 100.0
d1z8oa1402 Cytochrome P450-ERYF {Saccharopolyspora erythraea 100.0
d1jfba_399 Cytochrome P450-NOR, nitric reductase {Fungus (Fus 100.0
d1odoa_401 Cyp154a1 monooxygenase {Streptomyces coelicolor [T 100.0
d1ueda_403 p450 monoxygenase OxyC {Amycolatopsis orientalis [ 100.0
d1n40a_395 Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub 100.0
d1q5da_401 Cytochrome P450epok {Sorangium cellulosum [TaxId: 100.0
d1re9a_404 Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 99.98
d1cpta_428 Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306] 99.98
d1s1fa_399 Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} 99.97
d1ue8a_367 Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 99.95
d1lfka_394 p450 monoxygenase OxyB {Amycolatopsis orientalis [ 99.95
d1io7a_366 Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 99.95
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450 bm-3
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=2.1e-50  Score=366.46  Aligned_cols=335  Identities=14%  Similarity=0.119  Sum_probs=265.4

Q ss_pred             cchHHHHHHHHHHhhCCeeEEeecCCccEEEecChHHHHHHHHhCCCCCCCccc--cceeccCCCceee--ecchhHHHh
Q 018017            3 FICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGR--AFRLAFGQSSLFA--STFDRVKKR   78 (362)
Q Consensus         3 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~~v~v~~~~~i~~i~~~~~~~~~~~~~--~~~~~~g~~~~~~--~~~~~w~~~   78 (362)
                      -+++++++.+|++||||||++++|+.+ +|+|+||++|++++.++...+.....  ....+.| .|++.  .+|+.|+++
T Consensus        20 ~~~~~~~~~~~~~kyG~if~~~~~~~~-~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~wk~~   97 (453)
T d2ij2a1          20 TDKPVQALMKIADELGEIFKFEAPGRV-TRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAG-DGLFTSWTHEKNWKKA   97 (453)
T ss_dssp             SSCHHHHHHHHHHHHCSEEEEEETTEE-EEEECCHHHHHHHTCTTTEEECCCHHHHHHHHHHT-TSGGGSCTTSHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCEEEEEeCCce-EEEECCHHHHHHHHhcCCcccccccHhHHHHHhcC-CcEEecCCChHHHHHH
Confidence            457899999999999999999999977 68899999999999655433322211  2233445 36654  478999999


Q ss_pred             HhhhcccCcHHHHhhcCCcHHHHHHHHHHHHHHHhCCCCccHHHhHHHHHHHHHHHhhcCCCCCcccc---hhHHHHHHH
Q 018017           79 RVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKGNISCKMISQHMAFSLLGATIFGDEFFAWSK---ATVYEELFM  155 (362)
Q Consensus        79 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~fG~~~~~~~~---~~~~~~~~~  155 (362)
                      |+++.+.|+++.++.+.+.+.+.++.+++.|.+..+++.+|+.++++.+++++++.++||.+++....   ...+.....
T Consensus        98 Rk~l~~~fs~~~l~~~~~~i~~~~~~li~~l~~~~~~~~idl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~  177 (453)
T d2ij2a1          98 HNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVR  177 (453)
T ss_dssp             HHHHGGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSCCCCGGGCSSCCHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCccchHHHHHHHhhhcchhcccccccchhhhccchHHHHhhhh
Confidence            99999999999999999999999999999998766677899999999999999999999998865432   223444444


Q ss_pred             HHHhhccccc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHhhhhhcCCCchHHHh
Q 018017          156 TIAKDACFWA-SYSVTPFWKRGFWRYQHLCEKLKCLTQDIIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDAL  234 (362)
Q Consensus       156 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~l  234 (362)
                      .+........ .....|.+....+++.++.+.+.+++..+++++.+                      ..+...|+++.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~----------------------~~~~~~d~l~~l  235 (453)
T d2ij2a1         178 ALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKA----------------------SGEQSDDLLTHM  235 (453)
T ss_dssp             HHHHHHHTC---CTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HCCCCSSHHHHH
T ss_pred             ccchhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhhcc----------------------ccccccchhhhh
Confidence            4333322111 11122223333455667777788888888877663                      245667999999


Q ss_pred             hcC--CCCCCCCCchhHHHHHHHHHHhccchhhhHHHHHHHHHhhChHHHHHHHHHHHHHHcCCCCCChhhhhhcHhHHH
Q 018017          235 VSQ--EPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLA  312 (362)
Q Consensus       235 l~~--~~~~~~~~~~~i~~~~~~l~~ag~~tt~~~l~~~l~~L~~~p~~q~klr~Ei~~~~~~~~~~~~~~l~~lpyl~a  312 (362)
                      +..  ...+..++++++...++.+++||+|||+++++|++++|++||++|+++++|++++.+. ..++.+++.+||||+|
T Consensus       236 l~~~~~~~~~~ls~~ei~~~~~~~l~ag~~tta~~l~~~l~~L~~~p~~~~~~~~e~~~~~~~-~~~~~~~l~~~p~L~a  314 (453)
T d2ij2a1         236 LNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVD-PVPSYKQVKQLKYVGM  314 (453)
T ss_dssp             HHCCCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCS-SSCCHHHHHTCHHHHH
T ss_pred             hhhcccccCcchhhhHHHhhhccccccccccchhhhhcchhhhhcccccchhhhhhhhhhhcc-ccCChhhhhcCCcchh
Confidence            872  2345679999999999999999999999999999999999999999999999998765 4679999999999999


Q ss_pred             HHHHHhccCCCCcccccccccccceec-------eeeeechhhccCCCCCC-CCCCCC
Q 018017          313 TIYESARLLPAGPFLQRCSLKHGEAFL-------SLVNSLFDIIGDNPTPF-FHKHMF  362 (362)
Q Consensus       313 ~i~E~lRl~p~~~~~~r~~~~~d~~i~-------t~v~~~~~~~~~d~~~~-~~P~~F  362 (362)
                      ||+||||++|+++...|.++.+++.++       +.|+++.+++|+||++| +||++|
T Consensus       315 ~i~E~lR~~p~~~~~~r~~~~~~~~~~~~~ip~g~~v~~~~~~~~~d~~~~~~dp~~F  372 (453)
T d2ij2a1         315 VLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEF  372 (453)
T ss_dssp             HHHHHHHHSCSSCEEEEEESSCEEETTTEEECTTCEEEEEHHHHTTCHHHHCSCTTSC
T ss_pred             hhhhhhcccccccccccccccccccCCcceeecccccccchhhcccChhhcCCchhhc
Confidence            999999999999998887766555554       99999999999999999 689988
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} Back     information, alignment and structure
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} Back     information, alignment and structure
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} Back     information, alignment and structure
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure