Citrus Sinensis ID: 018070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MNESVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD
cccccccccccccccccccHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccccEEEEccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEcccEEEEEEccccccccEEEEccccccccHHHHHHHHHccccEEEEcccccccc
ccccEEEcccccccccHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEcccEEEEccHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHccHcHccccHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccEEEEccHHHccccccccEEEEEEcccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHcccEEEccHccccc
mnesvqlltprlaqydfighnfvilfipflpQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCstathngkpsqpspppiQVALTesagrgvfatRRIRASdlihtakpiithptlstlNSVCYFCLRKitsssqhfqhhNARFCGEVCKDNAKAFYDVERRADWSAFNDycrsqglkypLLVKRLACMIIsgaesadcidilqpaslspeLILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIymlpsfynhdcdpnahimwIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQgfgfqcnclrcssgd
MNESVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCSTAthngkpsqpsppPIQVALTESAGRGVFATRRIRASDLIhtakpiithptlstLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD
MNESVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLssaaasieseiaVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD
******LLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQ****************************RGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRC****
********TPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLIS*****************************IQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSS**
MNESVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLC**************PPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD
***SVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRC****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNESVQLLTPRLAQYDFIGHNFVILFIPFLPQVCYFWKMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9FG08325 Histone-lysine N-methyltr yes no 0.891 0.990 0.621 1e-115
Q54D67343 SET and MYND domain-conta yes no 0.675 0.711 0.249 3e-17
Q9H7B4 428 Histone-lysine N-methyltr yes no 0.711 0.600 0.251 5e-12
Q6C9E7438 Potential protein lysine yes no 0.770 0.634 0.215 2e-11
Q9CWR2 428 Histone-lysine N-methyltr no no 0.216 0.182 0.405 1e-10
O46040 462 Protein msta, isoform A O yes no 0.709 0.554 0.233 3e-10
Q54DL6521 SET and MYND domain-conta no no 0.277 0.191 0.357 4e-10
O74467 319 SET domain-containing pro yes no 0.204 0.231 0.413 1e-09
P97443 490 SET and MYND domain-conta yes no 0.709 0.522 0.234 2e-09
A6ZTB4526 Potential protein lysine N/A no 0.847 0.581 0.238 6e-09
>sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana GN=ATXR4 PE=2 SV=2 Back     alignment and function desciption
 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/325 (62%), Positives = 248/325 (76%), Gaps = 3/325 (0%)

Query: 38  KMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRR 97
           ++ L RYSRC  SRL++L        S A++     Q  PPPI+V LTESAGR VFATR+
Sbjct: 3   RLALNRYSRCF-SRLKTLTTPLFFSSSAASNRDGDYQIGPPPIRVGLTESAGRAVFATRK 61

Query: 98  IRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFY 157
           I A DLIHTAKP++  P+L  L+SVCY CL+K+  S++ F+     +C + C++N+K F 
Sbjct: 62  IGAGDLIHTAKPVVACPSLLKLDSVCYLCLKKLMGSAK-FEDRGVSYCSQECQENSKGFL 120

Query: 158 DVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAME 217
           DVE RADWS+F+DYCR+   KYPL+VKRL CMIISGA  ADC+DILQPA LS E+I  +E
Sbjct: 121 DVETRADWSSFDDYCRTHNFKYPLMVKRLCCMIISGARPADCLDILQPAVLSSEMISKIE 180

Query: 218 EGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGG-LYEDLLSSAAAS 276
           +G+ +L +AF+KA   D+ + FL KQWYT +LA+IRINAFRI+L GG   EDLLS AAAS
Sbjct: 181 DGYGLLWNAFRKANFKDDDVAFLTKQWYTAILARIRINAFRIDLVGGSCGEDLLSLAAAS 240

Query: 277 IESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMA 336
           +E E AVG+A+YMLPSFYNHDCDPNAHI+W+ NADARL  LRDVEEGEELRICYIDASM 
Sbjct: 241 VEGEGAVGHAVYMLPSFYNHDCDPNAHIIWLHNADARLNTLRDVEEGEELRICYIDASMG 300

Query: 337 RDARQAILTQGFGFQCNCLRCSSGD 361
            +ARQ IL+QGFGF CNCLRC S D
Sbjct: 301 YEARQTILSQGFGFLCNCLRCQSTD 325
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q54D67|Y2454_DICDI SET and MYND domain-containing protein DDB_G0292454 OS=Dictyostelium discoideum GN=DDB_G0292454 PE=3 SV=1 Back     alignment and function description
>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4 Back     alignment and function description
>sp|Q6C9E7|SET5_YARLI Potential protein lysine methyltransferase SET5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SET5 PE=3 SV=1 Back     alignment and function description
>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1 Back     alignment and function description
>sp|O46040|MSTAA_DROME Protein msta, isoform A OS=Drosophila melanogaster GN=msta PE=2 SV=3 Back     alignment and function description
>sp|Q54DL6|Y2140_DICDI SET and MYND domain-containing protein DDB_G0292140 OS=Dictyostelium discoideum GN=DDB_G0292140 PE=3 SV=1 Back     alignment and function description
>sp|O74467|SET5_SCHPO SET domain-containing protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set5 PE=1 SV=1 Back     alignment and function description
>sp|P97443|SMYD1_MOUSE SET and MYND domain-containing protein 1 OS=Mus musculus GN=Smyd1 PE=1 SV=3 Back     alignment and function description
>sp|A6ZTB4|SET5_YEAS7 Potential protein lysine methyltransferase SET5 OS=Saccharomyces cerevisiae (strain YJM789) GN=SET5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
297739785 660 unnamed protein product [Vitis vinifera] 0.819 0.448 0.680 1e-119
225441557327 PREDICTED: histone-lysine N-methyltransf 0.819 0.905 0.680 1e-119
255588343319 protein with unknown function [Ricinus c 0.869 0.984 0.648 1e-117
224088154283 SET domain protein [Populus trichocarpa] 0.783 1.0 0.722 1e-116
79507571325 histone-lysine N-methyltransferase ATXR4 0.891 0.990 0.621 1e-114
297806681325 hypothetical protein ARALYDRAFT_487474 [ 0.891 0.990 0.624 1e-112
115481972298 Os10g0410700 [Oryza sativa Japonica Grou 0.817 0.989 0.591 1e-102
326510051293 predicted protein [Hordeum vulgare subsp 0.789 0.972 0.590 1e-101
356533089313 PREDICTED: histone-lysine N-methyltransf 0.770 0.888 0.648 1e-101
449437548341 PREDICTED: histone-lysine N-methyltransf 0.789 0.835 0.634 1e-100
>gi|297739785|emb|CBI29967.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/297 (68%), Positives = 244/297 (82%), Gaps = 1/297 (0%)

Query: 65  TATHNGKPSQPSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCY 124
           T   N K + P PPPI+V++TE AGRGVFATRRI + DLIHTAKP+++HP+LS+++SVCY
Sbjct: 365 TPPENEKLASPGPPPIRVSITEMAGRGVFATRRIGSGDLIHTAKPLVSHPSLSSIHSVCY 424

Query: 125 FCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVK 184
           FCLRK+   +   +  N RFC + C++ +K F  VER+ADWSA++DYCR++GLKYPLLVK
Sbjct: 425 FCLRKLKPVTSS-EDCNVRFCSQECEEQSKVFVAVERKADWSAYDDYCRTRGLKYPLLVK 483

Query: 185 RLACMIISGAESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQW 244
           RLACM++SG  SADC+DILQPASLS E+I  M EGF +L+SAF KA   DE M FL +QW
Sbjct: 484 RLACMVVSGVASADCLDILQPASLSSEMISEMGEGFSLLQSAFMKAKARDECMAFLTEQW 543

Query: 245 YTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHI 304
           Y NVLA+ RIN+FRIELAGG YEDL S AAAS+E+E AVGNA+YMLPSFYNHDCDPN HI
Sbjct: 544 YINVLARFRINSFRIELAGGSYEDLHSLAAASVETEAAVGNAVYMLPSFYNHDCDPNVHI 603

Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
           +WIDN +ARL ALR++E GEELRICYIDASM  DARQ IL QGFGF+C+CLRCSSGD
Sbjct: 604 IWIDNVNARLKALREIEAGEELRICYIDASMDHDARQTILFQGFGFRCSCLRCSSGD 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441557|ref|XP_002276611.1| PREDICTED: histone-lysine N-methyltransferase ATXR4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255588343|ref|XP_002534573.1| protein with unknown function [Ricinus communis] gi|223524997|gb|EEF27811.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|224088154|ref|XP_002308346.1| SET domain protein [Populus trichocarpa] gi|222854322|gb|EEE91869.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79507571|ref|NP_196280.2| histone-lysine N-methyltransferase ATXR4 [Arabidopsis thaliana] gi|229488103|sp|Q9FG08.2|ATXR4_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR4; AltName: Full=Protein SET DOMAIN GROUP 38; AltName: Full=Trithorax-related protein 4; Short=TRX-related protein 4; Flags: Precursor gi|332003660|gb|AED91043.1| histone-lysine N-methyltransferase ATXR4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806681|ref|XP_002871224.1| hypothetical protein ARALYDRAFT_487474 [Arabidopsis lyrata subsp. lyrata] gi|297317061|gb|EFH47483.1| hypothetical protein ARALYDRAFT_487474 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115481972|ref|NP_001064579.1| Os10g0410700 [Oryza sativa Japonica Group] gi|78708616|gb|ABB47591.1| SET domain protein 123, putative, expressed [Oryza sativa Japonica Group] gi|113639188|dbj|BAF26493.1| Os10g0410700 [Oryza sativa Japonica Group] gi|215767244|dbj|BAG99472.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767272|dbj|BAG99500.1| unnamed protein product [Oryza sativa Japonica Group] gi|222612812|gb|EEE50944.1| hypothetical protein OsJ_31491 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|326510051|dbj|BAJ87242.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|356533089|ref|XP_003535101.1| PREDICTED: histone-lysine N-methyltransferase ATXR4-like [Glycine max] Back     alignment and taxonomy information
>gi|449437548|ref|XP_004136554.1| PREDICTED: histone-lysine N-methyltransferase ATXR4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2144138325 SDG38 "AT5G06620" [Arabidopsis 0.891 0.990 0.596 7.7e-103
DICTYBASE|DDB_G0292454343 DDB_G0292454 "SET domain-conta 0.681 0.717 0.252 4e-18
ZFIN|ZDB-GENE-051120-138 429 smyd3 "SET and MYND domain con 0.216 0.181 0.379 2.6e-13
MGI|MGI:1916976 428 Smyd3 "SET and MYND domain con 0.216 0.182 0.405 6.4e-13
UNIPROTKB|Q9H7B4 428 SMYD3 "Histone-lysine N-methyl 0.216 0.182 0.417 1.7e-12
RGD|1562635 428 Smyd3 "SET and MYND domain con 0.216 0.182 0.405 1.7e-12
UNIPROTKB|I3L5X6189 SMYD3 "Uncharacterized protein 0.216 0.412 0.417 2e-12
UNIPROTKB|A8MXR1148 SMYD3 "Histone-lysine N-methyl 0.216 0.527 0.417 3.2e-12
UNIPROTKB|Q5ZIZ2420 SMYD5 "SET and MYND domain-con 0.204 0.176 0.410 1.8e-11
SGD|S000001250526 SET5 "Methyltransferase involv 0.202 0.138 0.364 6e-10
TAIR|locus:2144138 SDG38 "AT5G06620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 194/325 (59%), Positives = 239/325 (73%)

Query:    38 KMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPPIQVALTESAGRGVFATRR 97
             ++ L RYSRC  SRL++L        S A++     Q  PPPI+V LTESAGR VFATR+
Sbjct:     3 RLALNRYSRCF-SRLKTLTTPLFFSSSAASNRDGDYQIGPPPIRVGLTESAGRAVFATRK 61

Query:    98 IRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFY 157
             I A DLIHTAKP++  P+L  L+SVCY CL+K+  S++ F+     +C + C++N+K F 
Sbjct:    62 IGAGDLIHTAKPVVACPSLLKLDSVCYLCLKKLMGSAK-FEDRGVSYCSQECQENSKGFL 120

Query:   158 DVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADCIDILQPASLSPELILAME 217
             DVE RADWS+F+DYCR+   KYPL+VKRL CMIISGA  ADC+DILQPA LS E+I  +E
Sbjct:   121 DVETRADWSSFDDYCRTHNFKYPLMVKRLCCMIISGARPADCLDILQPAVLSSEMISKIE 180

Query:   218 EGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLY-EDLLXXXXXX 276
             +G+ +L +AF+KA   D+ + FL KQWYT +LA+IRINAFRI+L GG   EDLL      
Sbjct:   181 DGYGLLWNAFRKANFKDDDVAFLTKQWYTAILARIRINAFRIDLVGGSCGEDLLSLAAAS 240

Query:   277 XXXXXXVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDASMA 336
                   VG+A+YMLPSFYNHDCDPNAHI+W+ NADARL  LRDVEEGEELRICYIDASM 
Sbjct:   241 VEGEGAVGHAVYMLPSFYNHDCDPNAHIIWLHNADARLNTLRDVEEGEELRICYIDASMG 300

Query:   337 RDARQAILTQGFGFQCNCLRCSSGD 361
              +ARQ IL+QGFGF CNCLRC S D
Sbjct:   301 YEARQTILSQGFGFLCNCLRCQSTD 325
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
DICTYBASE|DDB_G0292454 DDB_G0292454 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-138 smyd3 "SET and MYND domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5X6 SMYD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A8MXR1 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIZ2 SMYD5 "SET and MYND domain-containing protein 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000001250 SET5 "Methyltransferase involved in methylation of histone H4 Lys5, -8, -12" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FG08ATXR4_ARATH2, ., 1, ., 1, ., 4, 30.62150.89190.9907yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.43LOW CONFIDENCE prediction!
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
pfam00856113 pfam00856, SET, SET domain 3e-07
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-06
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information 
 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 276 SIESEIAVGNAIYMLP--SFYNHDCDPNAHIMWIDNAD---ARLMALRDVEEGEELRICY 330
           S        +A  +     F NH C+PN  + ++         + ALRD++ GEEL I Y
Sbjct: 53  SRLDSEYDIDATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
KOG2084 482 consensus Predicted histone tail methylase contain 99.8
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.77
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.54
KOG1338 466 consensus Uncharacterized conserved protein [Funct 98.52
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.51
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.24
COG2940480 Proteins containing SET domain [General function p 98.08
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.88
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 97.84
KOG1337 472 consensus N-methyltransferase [General function pr 97.6
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 97.15
KOG1085392 consensus Predicted methyltransferase (contains a 96.62
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 96.4
KOG11411262 consensus Predicted histone methyl transferase [Ch 96.11
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 95.67
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 94.4
KOG1085392 consensus Predicted methyltransferase (contains a 91.94
KOG1081463 consensus Transcription factor NSD1 and related SE 86.69
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 81.16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=99.80  E-value=3.4e-19  Score=179.49  Aligned_cols=244  Identities=21%  Similarity=0.298  Sum_probs=139.6

Q ss_pred             CCCccEEEEcccCCCCCEEEecCCeEeecCCcccccccccccccccCCCCCCCCcCceecChhhhhhhccchhhhhhhhh
Q 018070           86 ESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAKAFYDVERRADW  165 (361)
Q Consensus        86 ~~~GRglvAtrdI~~GevIl~E~P~~~~~~~~~~~~~C~~C~~~~~~~~~cc~c~~~~yCS~~C~~~a~~~H~~EC~~~w  165 (361)
                      +..|||++|+++|++|++|+.|.|++.+|..    ..|..|+..  ....|-.|....+|+..++...|..|.++|...-
T Consensus        22 ~~~Gr~~~a~~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~--~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (482)
T KOG2084|consen   22 PELGRGLVATQAIEAGEVILEEEPLVVGPAS----KSCSRCLGC--SCDHCRRCLEAIECNKCQQRGWALCGKFACSADL   95 (482)
T ss_pred             cccCcceeeecccCCCceEEecCcceeeecc----cCCcccccc--chhhhhcCCccHhhhhhhccCccccchhhcchhh
Confidence            5899999999999999999999999999988    455555554  2234555667777766665555556666654411


Q ss_pred             HHhhHHHhhhcCchhHHHHHHHHHHHhcCCCHHHh--------hhcCCCCCChhhHhhHHHHHHHHHHHHHhcCCChHHH
Q 018070          166 SAFNDYCRSQGLKYPLLVKRLACMIISGAESADCI--------DILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQM  237 (361)
Q Consensus       166 ~~~~~~~~~~~~~~p~l~~Rl~~~~~~~~~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  237 (361)
                      ............ .+   .++.............+        ..+....  .... .+...+............    .
T Consensus        96 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~----~  164 (482)
T KOG2084|consen   96 AKLECEPLKLVG-AP---EECLALSSLHEESREAIVLLSLLEECSLSAEK--PRLR-LDLSYLEHGATEDDQSHL----L  164 (482)
T ss_pred             ccccccchhhcc-ch---HHHHHhhcCCccccchHHHHHHHHHhhhhccc--ccHh-HHHhhHHHHhhHHhhccc----c
Confidence            100000000000 00   00000000000000000        0000000  0000 000000000000000000    0


Q ss_pred             hhhcHHHHHHHHhhhhccceeeeccCcchhHHhhhhhhhccccc--eeeEEEecccccccCCCCCCcEEEEecCCEEEEE
Q 018070          238 KFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEI--AVGNAIYMLPSFYNHDCDPNAHIMWIDNADARLM  315 (361)
Q Consensus       238 ~~l~~~~~~~ll~~l~~Nsf~I~~~~~~~~~~~~~~~~~~~~~~--~~g~gLyp~~Sl~NHSC~PN~~~~f~~~~~l~vr  315 (361)
                      .....+....++..+..+++.+.....              ...  ..+.|+||..+++||||.||+...| ++....++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~-~~~~~~~~  229 (482)
T KOG2084|consen  165 LVLAADCISKLFPSLLCNSITNASSLR--------------VPEPLFLGRGLFPGSSLFNHSCFPNISVIF-DGRGLALL  229 (482)
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhh--------------ccccccceeeecccchhcccCCCCCeEEEE-CCceeEEE
Confidence            011123333344444444443322100              011  4799999999999999999999888 77788888


Q ss_pred             EccCCCCCC-eeeeeccCCCCCHHHHHHHHhCCCCeEEeccCCCCCC
Q 018070          316 ALRDVEEGE-ELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD  361 (361)
Q Consensus       316 A~rdI~~GE-EL~isY~d~~~~~~~Rr~~L~~~y~F~C~C~rC~~~d  361 (361)
                      +...+.+++ ||+++|++..+++..||..|+..|.|.|.|+||.+++
T Consensus       230 ~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~  276 (482)
T KOG2084|consen  230 VPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPT  276 (482)
T ss_pred             eecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCC
Confidence            888888877 9999999999999999999999999999999999753

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3ru0_A 438 Cocrystal Structure Of Human Smyd3 With Inhibitor S 5e-13
3pdn_A 428 Crystal Structure Of Smyd3 In Complex With Methyltr 6e-13
3oxf_A 436 Human Lysine Methyltransferase Smyd3 In Complex Wit 6e-13
3qwp_A 429 Crystal Structure Of Set And Mynd Domain Containing 6e-13
3oxg_A 464 Human Lysine Methyltransferase Smyd3 In Complex Wit 7e-13
3mek_A 429 Crystal Structure Of Human Histone-Lysine N- Methyl 6e-12
3n71_A 490 Crystal Structure Of Cardiac Specific Histone Methy 3e-10
3qwv_A 433 Crystal Structure Of Histone Lysine Methyltransfera 3e-06
3s7b_A 433 Structural Basis Of Substrate Methylation And Inhib 5e-06
3tg4_A 433 Structure Of Smyd2 In Complex With Sam Length = 433 8e-06
3rib_A 441 Human Lysine Methyltransferase Smyd2 In Complex Wit 1e-05
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76  SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
            P  ++   T + G G+ A   +R  +L+  + P+       +   VC  CL       +
Sbjct: 4   EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 63
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
             Q   A++C   C+  A           W      C+   S   +YP     L+ R+  
Sbjct: 64  CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 112
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
            ++ GA  ES          S   +L    +EG    VM    F +  I D         
Sbjct: 113 KLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFD 172
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
            +    A++  N+F I                       VG  +Y   S  NH CDPN  
Sbjct: 173 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 215
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
           I++ +     L A+RD+E GEEL ICY+D  M  + R+  L   + F+C+C RC + D
Sbjct: 216 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 272
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 Back     alignment and structure
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 Back     alignment and structure
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 Back     alignment and structure
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 Back     alignment and structure
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429 Back     alignment and structure
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490 Back     alignment and structure
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433 Back     alignment and structure
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433 Back     alignment and structure
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433 Back     alignment and structure
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 7e-43
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 2e-42
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 4e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-08
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 9e-07
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 4e-06
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 1e-05
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-05
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 2e-05
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 1e-04
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 1e-04
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 1e-04
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-04
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-04
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 3e-04
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 4e-04
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 6e-04
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 7e-04
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
 Score =  153 bits (387), Expect = 7e-43
 Identities = 50/290 (17%), Positives = 102/290 (35%), Gaps = 27/290 (9%)

Query: 76  SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
           +   ++   +   GRG+ A R     DL+ +        T+      C  C  +    S+
Sbjct: 5   ARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSK 64

Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAE 195
             +   A +C   C+      + +E  +      ++  S+ ++    +     +      
Sbjct: 65  CGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTP 124

Query: 196 SADCIDILQ----PASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLAQ 251
           S   + + +       L  E    ++     L   + K       ++F +      + AQ
Sbjct: 125 SEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKY------LEFPDHSSLVVLFAQ 178

Query: 252 IRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWIDNAD 311
           +  N F IE     +                +G+AI+   +  NH C PN  + +     
Sbjct: 179 VNCNGFTIEDEELSH----------------LGSAIFPDVALMNHSCCPNVIVTY-KGTL 221

Query: 312 ARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
           A + A++++  G+E+   YID     + R   L   + F C C  C++ D
Sbjct: 222 AEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKD 271
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 100.0
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.74
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.69
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.67
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 99.62
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 99.6
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.52
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.47
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 99.45
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 99.43
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 99.37
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 99.36
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 99.3
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.94
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.91
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.84
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.79
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.79
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.78
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.73
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 98.6
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 97.98
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 97.9
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 97.7
3db5_A151 PR domain zinc finger protein 4; methyltransferase 97.64
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 97.58
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 97.52
3dal_A196 PR domain zinc finger protein 1; methyltransferase 97.23
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 96.97
3ray_A237 PR domain-containing protein 11; structural genomi 96.67
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 94.18
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 93.83
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 93.03
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 92.67
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 92.55
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 92.44
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 91.0
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 90.65
3db5_A151 PR domain zinc finger protein 4; methyltransferase 89.6
3dal_A196 PR domain zinc finger protein 1; methyltransferase 85.2
1wvo_A79 Sialic acid synthase; antifreeze protein like doma 83.22
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
Probab=100.00  E-value=3e-47  Score=378.62  Aligned_cols=263  Identities=26%  Similarity=0.411  Sum_probs=193.2

Q ss_pred             CCCCCeEEEeeCCCccEEEEcccCCCCCEEEecCCeEeecCCcccccccccccccccCCCCCCCCcCceecChhhhhhhc
Q 018070           75 PSPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEVCKDNAK  154 (361)
Q Consensus        75 ~~~~~veV~~~~~~GRglvAtrdI~~GevIl~E~P~~~~~~~~~~~~~C~~C~~~~~~~~~cc~c~~~~yCS~~C~~~a~  154 (361)
                      ..+.+|++..++++||||||++||++||+|+.|+|++.++.......+|.+|+++......|..|..++|||++||+++|
T Consensus         2 ~~~~~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w   81 (429)
T 3qwp_A            2 MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW   81 (429)
T ss_dssp             --CCSEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTH
T ss_pred             CcccceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhh
Confidence            35788999999999999999999999999999999999998888899999999987666677788899999999999999


Q ss_pred             cchhhhhhhhhHHhhHHHhhhcCchhHHHHHHHHHHHhcCCC-HH---HhhhcCCCCCChhhHhhHHHHHHHHHHHHHhc
Q 018070          155 AFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAES-AD---CIDILQPASLSPELILAMEEGFVMLRSAFKKA  230 (361)
Q Consensus       155 ~~H~~EC~~~w~~~~~~~~~~~~~~p~l~~Rl~~~~~~~~~~-~~---~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  230 (361)
                      ..|+.||...- .+..   ........++.|++.++..+... .+   .+..|..+.  .....+..+.+..+...+...
T Consensus        82 ~~Hk~eC~~~~-~~~~---~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~--~~~~~~~~~~~~~~~~~~~~~  155 (429)
T 3qwp_A           82 PDHKRECKCLK-SCKP---RYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNI--NKLTEDRKEGLRQLVMTFQHF  155 (429)
T ss_dssp             HHHHHHHHHHH-HTTT---CCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCG--GGCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhhhhHH-hcCc---cCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhCh--hhcChhHHHHHHHHHHHHHHH
Confidence            99999997631 1110   01111223455655544433221 11   122233211  111111112233222222111


Q ss_pred             ---CCChHHHhhhcHHHHHHHHhhhhccceeeeccCcchhHHhhhhhhhccccceeeEEEecccccccCCCCCCcEEEEe
Q 018070          231 ---GIDDEQMKFLNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWI  307 (361)
Q Consensus       231 ---~~~~~~~~~l~~~~~~~ll~~l~~Nsf~I~~~~~~~~~~~~~~~~~~~~~~~~g~gLyp~~Sl~NHSC~PN~~~~f~  307 (361)
                         .+. +.....+.+.+.++++++.+|+|+|....                ...+|.||||.+|++||||.||+.+.| 
T Consensus       156 l~~~~~-~~~~~~~~~~~~~~~~~~~~N~f~i~~~~----------------~~~~g~~l~~~~s~~NHsC~PN~~~~~-  217 (429)
T 3qwp_A          156 MREEIQ-DASQLPPAFDLFEAFAKVICNSFTICNAE----------------MQEVGVGLYPSISLLNHSCDPNCSIVF-  217 (429)
T ss_dssp             TTTTCC-SGGGSCTTCCHHHHHHHHHHHCEEEECTT----------------SCEEEEEECTTGGGCEECSSCSEEEEE-
T ss_pred             HhhhcC-ccccCCCHHHHHHHHHHHHhcCccccccc----------------cccceEEEchhhHhhCcCCCCCeEEEE-
Confidence               111 11112234578899999999999998642                356799999999999999999999999 


Q ss_pred             cCCEEEEEEccCCCCCCeeeeeccCCCCCHHHHHHHHhCCCCeEEeccCCCCCC
Q 018070          308 DNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD  361 (361)
Q Consensus       308 ~~~~l~vrA~rdI~~GEEL~isY~d~~~~~~~Rr~~L~~~y~F~C~C~rC~~~d  361 (361)
                      ++.+++|+|+|||++||||||||++..+++.+||+.|+++|+|+|.|++|.+++
T Consensus       218 ~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  271 (429)
T 3qwp_A          218 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD  271 (429)
T ss_dssp             ETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTT
T ss_pred             eCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCeEeeCCCCCCCc
Confidence            578999999999999999999999999999999999999999999999998753
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-06
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 5e-06
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 5e-06
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 0.001
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 0.001
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 289 MLPSFYNHDCDPNAHIMWIDNAD----ARLMALRDVEEGEELRICYIDASMARDARQAIL 344
            L    NH   PN       +        +  LR VE  EEL + Y              
Sbjct: 97  SLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEA 156

Query: 345 TQGFGFQCNCLRCS 358
            + +  +    + +
Sbjct: 157 PEWYQVELKAFQAT 170
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.85
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.57
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 99.35
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 99.06
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.83
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.1
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 98.05
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.99
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 95.43
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.85  E-value=6.8e-23  Score=186.96  Aligned_cols=88  Identities=16%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             hcHHHHHHHHhhhhccceeeeccCcchhHHhhhhhhhccccceeeEEEecccccccCCCCCCcEEEEec----------C
Q 018070          240 LNKQWYTNVLAQIRINAFRIELAGGLYEDLLSSAAASIESEIAVGNAIYMLPSFYNHDCDPNAHIMWID----------N  309 (361)
Q Consensus       240 l~~~~~~~ll~~l~~Nsf~I~~~~~~~~~~~~~~~~~~~~~~~~g~gLyp~~Sl~NHSC~PN~~~~f~~----------~  309 (361)
                      ++.+.+..+++.+..|+|.+..                    ..|.+|||.++|+||||.||+...+.+          +
T Consensus       158 ~~~~~~~~a~~~v~sr~~~~~~--------------------~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~  217 (261)
T d2h2ja2         158 VTLDDFFWAFGILRSRAFSRLR--------------------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWD  217 (261)
T ss_dssp             CCHHHHHHHHHHHHHHSBCCC-----------------------CCBCCTTGGGCEECSSCCSCCCCCC-----------
T ss_pred             cCHHHHHHHHHHhhcccccccc--------------------cccccchhhhHHhhcCCCCCcccccccccCcccccCCC
Confidence            5567788888899999886543                    246789999999999999999877642          3


Q ss_pred             CEEEEEEccCCCCCCeeeeeccCCCCCHHHHHHHHhCCCCeEE
Q 018070          310 ADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQC  352 (361)
Q Consensus       310 ~~l~vrA~rdI~~GEEL~isY~d~~~~~~~Rr~~L~~~y~F~C  352 (361)
                      +.++|+|.|||++||||||||+... +..    .|...|||.+
T Consensus       218 ~~~~l~A~r~I~~GEEI~isYG~~~-~n~----~ll~~yGFv~  255 (261)
T d2h2ja2         218 YLFSLKSPLSVKAGEQVYIQYDLNK-SNA----ELALDYGFIE  255 (261)
T ss_dssp             CEEEEECSSCCCTTSBCEECSCSSC-CHH----HHHHHSSCCC
T ss_pred             cEEEEEECCCCCCCCEEEEecCCCC-CHH----HHHHhCCCCC
Confidence            4799999999999999999999643 222    3556899976
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure