Citrus Sinensis ID: 018099

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MASSESAALESSESSVLSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIAEGS
ccccHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEEccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccccccc
ccccHHHHHccccccccHHHHHHHcccccccHHcEccccccccccccccccccccEEEHHHHcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEccccccHHHEEEEEEccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEcccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccc
massesaalessesSVLSVKELMKNhkitvpesylrldqeppnplngthvpasiptfdlesllskEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMkykikpgdvegygavarsdgkldwgdrvyMITNpiqrrkshlpelpssLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSvrmnyyppcpkpevvmgltphsdaTAITILHQvngvdgleikkdgvwiparilpnalvvnVGDILEIMSNGVYRSVEHRATVNSVKERISIAFfvgpkfdaqvgpltslinpdnpplfRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIAEGS
massesaalessessVLSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVarsdgkldwgdRVYMITnpiqrrkshlpelpSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTslinpdnppLFRRVLMEEYVKTFfsrklngkshleYMKIEIAEGS
MassesaalessessvlsvKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIAEGS
********************************************************FDL**LL****KEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQ************LRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKI******
*********************LMKNHKITVPESYLRLDQE**********PASIPTFDLESLLSKED*EFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEY**IE*****
****************LSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIAEGS
***********SESSVLSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEI****
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MASSESAALESSESSVLSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIAEGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.963 0.972 0.473 3e-89
D4N501364 Probable 2-oxoglutarate/F N/A no 0.941 0.934 0.482 7e-88
D4N502360 Codeine O-demethylase OS= N/A no 0.944 0.947 0.466 9e-88
D4N500364 Thebaine 6-O-demethylase N/A no 0.933 0.925 0.464 1e-82
A2A1A0352 S-norcoclaurine synthase N/A no 0.903 0.926 0.410 7e-64
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.828 0.892 0.363 8e-48
Q07512348 Flavonol synthase/flavano N/A no 0.897 0.931 0.360 4e-47
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.844 0.905 0.366 4e-47
Q41452349 Flavonol synthase/flavano N/A no 0.903 0.934 0.343 9e-47
Q9M547334 Flavonol synthase/flavano N/A no 0.869 0.940 0.365 2e-45
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/355 (47%), Positives = 234/355 (65%), Gaps = 7/355 (1%)

Query: 7   AALESSESSVLSVKELMKNHKIT-VPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSK 65
            A + S   V SV+E++K   IT VP  Y+R DQ+     +   V   IP  D++ L S 
Sbjct: 5   GAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSS 64

Query: 66  EDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDV 125
              + ++EKL   CKEWG FQLVNHG+ SS L K+K ++ +F+ LPMEEK K+  +P ++
Sbjct: 65  TTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEI 124

Query: 126 EGYGA--VARSDGKLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLESYFLELQKFALK 182
           EG+G   V   D KLDW D  +    P++ RK HL P+LP   R TLE Y  E+Q  A K
Sbjct: 125 EGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVA-K 183

Query: 183 LLGLVMGKALNIESKEIEEIFED--GMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILH 240
           +L   M +AL I+ +E+E++F+D   +QS+RMNYYPPCP+P+ V+GLTPHSD+  +T+L 
Sbjct: 184 ILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLM 243

Query: 241 QVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISI 300
           QVN V+GL+IKKDG W+P + LPNA +VN+GD+LEI++NG YRS+EHR  VNS KER+SI
Sbjct: 244 QVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSI 303

Query: 301 AFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKI 355
           A F       +VGP  SL+       F+R+ M+EY    FSR L+GK++L+ ++I
Sbjct: 304 ATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
224061029365 predicted protein [Populus trichocarpa] 0.983 0.972 0.628 1e-126
359483581363 PREDICTED: protein SRG1-like [Vitis vini 0.983 0.977 0.630 1e-125
225462480364 PREDICTED: protein SRG1 [Vitis vinifera] 0.994 0.986 0.620 1e-125
255557479368 Flavonol synthase/flavanone 3-hydroxylas 0.969 0.951 0.626 1e-125
225462484362 PREDICTED: protein SRG1 [Vitis vinifera] 0.983 0.980 0.621 1e-125
297740600371 unnamed protein product [Vitis vinifera] 0.983 0.956 0.621 1e-125
225462492355 PREDICTED: protein SRG1 [Vitis vinifera] 0.972 0.988 0.626 1e-125
225462494359 PREDICTED: protein SRG1-like [Vitis vini 0.986 0.991 0.617 1e-124
225462488359 PREDICTED: protein SRG1 [Vitis vinifera] 0.986 0.991 0.619 1e-124
297740603424 unnamed protein product [Vitis vinifera] 0.986 0.839 0.619 1e-124
>gi|224061029|ref|XP_002300323.1| predicted protein [Populus trichocarpa] gi|222847581|gb|EEE85128.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 283/361 (78%), Gaps = 6/361 (1%)

Query: 1   MASSESAALESSESSVLSVKELMKNHKITVPESYLRLDQEPPN-PLNGTHVPASIPTFDL 59
           MASS+S +L+    SV+SV EL+K   I+VP+ Y+ +DQ+ P   +   H   ++PT D 
Sbjct: 1   MASSKSDSLDVH--SVISVMELVKEPIISVPKEYVHMDQQNPTFSVRTDHPLPTLPTIDF 58

Query: 60  ESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYK 119
           + L+S +  + +LEKLH+ CKEWG FQLVNHGVSSSLL +LKH++ EFY LP+E+K KY 
Sbjct: 59  KLLVSVDTTDLELEKLHSTCKEWGFFQLVNHGVSSSLLEQLKHEIEEFYNLPLEDKRKYM 118

Query: 120 IKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLESYFLELQK 178
           ++P D +GYG   + D  LDWGDR YMITNPI  RK HL PELP S R  LE Y LELQ+
Sbjct: 119 VRPDDFQGYGN-TKLDEILDWGDRFYMITNPIHHRKPHLFPELPPSFRNLLECYLLELQR 177

Query: 179 FALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITI 238
            A+KLLG +  +AL ++ KEI EIF+DG+QSVRM  YPPCP+PE+V+G  PHSDAT ITI
Sbjct: 178 LAMKLLGFI-AEALKVDLKEIGEIFDDGLQSVRMTCYPPCPQPELVVGFRPHSDATGITI 236

Query: 239 LHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERI 298
           L+QVNGVDGL+IK+DGVWIP + +P+ALVVNVGDILEI+SNGVY+S+EHRAT NS +ER+
Sbjct: 237 LNQVNGVDGLQIKRDGVWIPVKFIPDALVVNVGDILEILSNGVYKSIEHRATTNSKEERL 296

Query: 299 SIAFFVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIEIA 358
           S+AFFV PKF+A+VGPLTSLI+P NPPLFRR+ ME+YVK FFSRKL GKS LE MKIE A
Sbjct: 297 SMAFFVSPKFEAEVGPLTSLISPQNPPLFRRIGMEKYVKDFFSRKLQGKSFLEDMKIEGA 356

Query: 359 E 359
           E
Sbjct: 357 E 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483581|ref|XP_003632980.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462480|ref|XP_002269890.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557479|ref|XP_002519770.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541187|gb|EEF42743.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225462484|ref|XP_002270078.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740600|emb|CBI30782.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462492|ref|XP_002270474.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462494|ref|XP_002270514.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462488|ref|XP_002270288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740603|emb|CBI30785.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.927 0.935 0.476 1e-82
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.925 0.938 0.480 2.8e-82
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.916 0.937 0.476 2.6e-79
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.930 0.930 0.475 8.7e-79
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.927 0.941 0.448 2.7e-77
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.925 0.917 0.391 4e-67
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.880 0.911 0.377 5.3e-56
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.878 0.898 0.364 8.6e-56
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.880 0.913 0.372 1.1e-55
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.916 0.892 0.342 2.9e-55
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 163/342 (47%), Positives = 228/342 (66%)

Query:    20 KELMKNHKIT-VPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAI 78
             +E++K   IT VP  Y+R DQ+     +   V   IP  D++ L S    + ++EKL   
Sbjct:    18 QEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFA 77

Query:    79 CKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGA--VARSDG 136
             CKEWG FQLVNHG+ SS L K+K ++ +F+ LPMEEK K+  +P ++EG+G   V   D 
Sbjct:    78 CKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQ 137

Query:   137 KLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIE 195
             KLDW D  +    P++ RK HL P+LP   R TLE Y  E+Q  A K+L   M +AL I+
Sbjct:   138 KLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVA-KILIAKMARALEIK 196

Query:   196 SKEIEEIFED--GMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLEIKKD 253
              +E+E++F+D   +QS+RMNYYPPCP+P+ V+GLTPHSD+  +T+L QVN V+GL+IKKD
Sbjct:   197 PEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKD 256

Query:   254 GVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVG 313
             G W+P + LPNA +VN+GD+LEI++NG YRS+EHR  VNS KER+SIA F       +VG
Sbjct:   257 GKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVG 316

Query:   314 PLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKI 355
             P  SL+       F+R+ M+EY    FSR L+GK++L+ ++I
Sbjct:   317 PAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39224SRG1_ARATHNo assigned EC number0.47320.96390.9720yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-128
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-99
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-87
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 5e-75
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-74
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-73
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-72
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-65
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-64
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-61
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-58
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 6e-55
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-54
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 7e-53
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-48
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-48
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-47
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-43
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-42
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 3e-35
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-35
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-35
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-34
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-33
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 7e-33
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-27
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 6e-18
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-09
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  372 bits (957), Expect = e-128
 Identities = 169/353 (47%), Positives = 237/353 (67%), Gaps = 8/353 (2%)

Query: 10  ESSESSVL--SVKELMKNHKIT-VPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKE 66
            +  SS++  SV+E++K   IT VP  Y+R DQ+       + + + IP  D++ L S  
Sbjct: 6   ATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSST 65

Query: 67  DKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVE 126
             + ++EKL   CKEWG FQLVNHG+ SS L K+K ++ +F+ LPMEEK K   +PG++E
Sbjct: 66  AMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIE 125

Query: 127 GYGA--VARSDGKLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLESYFLELQKFALKL 183
           G+G   V   D KLDW D  ++   P++ RK HL P+LP   R TLE+Y  E++  A K+
Sbjct: 126 GFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIA-KI 184

Query: 184 LGLVMGKALNIESKEIEEIFEDGM-QSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQV 242
           L   M  AL I+ +E+E++F+D + QS+RMNYYPPCP+P+ V+GLTPHSDA  +TIL QV
Sbjct: 185 LFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV 244

Query: 243 NGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAF 302
           N V+GL+IKKDG W+  + LPNALVVNVGDILEI++NG YRS+EHR  VNS KER+S+A 
Sbjct: 245 NEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVAT 304

Query: 303 FVGPKFDAQVGPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKI 355
           F       ++GP  SL+      LF+ +  +EY    FSR+L+GK++L+ M+I
Sbjct: 305 FHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.86
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.81
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.2
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.83
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.42
TIGR02466201 conserved hypothetical protein. This family consis 84.33
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=3.7e-86  Score=640.69  Aligned_cols=340  Identities=49%  Similarity=0.860  Sum_probs=303.4

Q ss_pred             cccchHHHHHC-CCCCCCCCccCCCCCCCCCCCCCCCCCCCceEeCCCCCCCChHHHHHHHHHHHHHhhceeEEecCCCC
Q 018099           15 SVLSVKELMKN-HKITVPESYLRLDQEPPNPLNGTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVS   93 (361)
Q Consensus        15 ~~~~v~~l~~~-~~~~vp~~y~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~d~~~~~~~~l~~A~~~~GfF~v~nHGI~   93 (361)
                      .++.|+.|+.+ ++++||++||+|++++|.+........+||||||+.+.+++..++++++|++||++||||||+|||||
T Consensus        13 ~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~   92 (357)
T PLN02216         13 IVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGID   92 (357)
T ss_pred             cchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCC
Confidence            35679999876 78999999999999987532111112579999999987665434478999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHhhhccCCCCcccCcc--cccCCCccCcccccccccccccccCCCC-CCCchHHHHHHH
Q 018099           94 SSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGA--VARSDGKLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLE  170 (361)
Q Consensus        94 ~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~-P~~~~~fr~~~~  170 (361)
                      .++++++++++++||+||.|+|+++...++..+||+.  .....+..||+|.|.+...|.....++. |+.|++||++++
T Consensus        93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~  172 (357)
T PLN02216         93 SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLE  172 (357)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHH
Confidence            9999999999999999999999999875566789976  2334567799999988766644444565 888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhccc-ceeeeeeccCCCCCCCcccCccccccCCceeEEeecCCCCCee
Q 018099          171 SYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDG-MQSVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLE  249 (361)
Q Consensus       171 ~y~~~~~~l~~~ll~~~l~~~Lgl~~~~~~~~~~~~-~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTiL~q~~~v~GLq  249 (361)
                      +|+++|++|+.+||++ |+++|||++++|.+.+... .+.||+||||||++++.++|+++|||+|+||||+|+++++|||
T Consensus       173 ~y~~~~~~l~~~ll~~-la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQ  251 (357)
T PLN02216        173 TYSAEVKSIAKILFAK-MASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQ  251 (357)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCcee
Confidence            9999999999999999 9999999999999988763 5789999999999999999999999999999999965799999


Q ss_pred             EeeCCeEEEcccCCCcEEEEechhhHHHhCCceecccceeecCCCCCeeEEEEeecCCCCCeeecCccccCCCCCCCCCC
Q 018099          250 IKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQVGPLTSLINPDNPPLFRR  329 (361)
Q Consensus       250 V~~~g~W~~V~p~pg~lvVniGd~lq~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~lv~~~~p~~y~~  329 (361)
                      |+++|+|++|+|+||+|||||||+||+||||+|||++|||++++.++||||+||++|+.|++|.|+++|+++++|++|++
T Consensus       252 V~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~  331 (357)
T PLN02216        252 IKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKS  331 (357)
T ss_pred             EEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhccCCCCcccccccc
Q 018099          330 VLMEEYVKTFFSRKLNGKSHLEYMKI  355 (361)
Q Consensus       330 ~~~~ey~~~~~~~~~~~~~~l~~~k~  355 (361)
                      ++|+||++.++++.+.++..++.+||
T Consensus       332 ~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        332 LTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             cCHHHHHHHHHhcccCCcchhhhhcC
Confidence            99999999999999999999998885

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-42
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-42
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-41
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-33
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-14
1w28_A331 Conformational Flexibility Of The C-Terminus With I 4e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-07
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 6e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 7e-07
1e5h_A308 Delta-R307a Deacetoxycephalosporin C Synthase Compl 2e-06
1e5i_A306 Delta-R306 Deacetoxycephalosporin C Synthase Comple 2e-06
1unb_A311 Deacetoxycephalosporin C Synthase Complexed With 2- 2e-06
1hjf_A311 Alteration Of The Co-Substrate Selectivity Of Deace 7e-06
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 184/324 (56%), Gaps = 22/324 (6%)
Query: 22  LMKNHKITVPESYLRLDQEPPNPLNGTHVPA------SIPTFDLESLLSKEDK--EFQLE 73
           L K+  I++P+ Y+R  +E  + +N   +         +PT DL+++ S ++K  E  +E
Sbjct: 10  LAKSGIISIPKEYIRPKEELES-INDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIE 68
Query: 74  KLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYK--IKPGDVEGYGA- 130
           +L     +WG+  L+NHG+ + L+ ++K    EF+ L +EEK KY      G ++GYG+ 
Sbjct: 69  ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 131 -VARSDGKLDWGDRVYMITNPIQRRK-SHLPELPSSLRKTLESYFLELQKFALKLLGLVM 188
               + G+L+W D  + +  P ++R  S  P+ PS   +    Y   L+  A K+    +
Sbjct: 129 LANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK-AL 187
Query: 189 GKALNIESKEIEEI---FEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAIT-ILHQVNG 244
              L +E   +E+     E+ +  +++NYYP CP+PE+ +G+  H+D +A+T ILH  N 
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH--NM 245
Query: 245 VDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFV 304
           V GL++  +G W+ A+ +P+++V+++GD LEI+SNG Y+S+ HR  VN  K RIS A F 
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 305 GPKFDAQV-GPLTSLINPDNPPLF 327
            P  D  V  PL  +++ ++P  F
Sbjct: 306 EPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With Implications For Substrate Binding And Catalysis In A New Crystal Form Of Deacetoxycephalosporin C Synthase Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed With Succinate And Carbon Dioxide Length = 308 Back     alignment and structure
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed With Iron And 2-Oxoglutarate Length = 306 Back     alignment and structure
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With 2-Oxoglutarate And Ampicillin Length = 311 Back     alignment and structure
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of Deacetoxycephalosporin C Synthase: The Role Of Arginine-258 Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-146
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-140
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-84
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-78
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-73
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-72
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  415 bits (1069), Expect = e-146
 Identities = 108/357 (30%), Positives = 193/357 (54%), Gaps = 22/357 (6%)

Query: 16  VLSVKELMKNHKITVPESYLRLDQEPPNPLNGTHVPA-----SIPTFDLESLLSKEDKEF 70
           V  V+ L K+  I++P+ Y+R  +E  +  +            +PT DL+++ S ++K  
Sbjct: 4   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63

Query: 71  Q--LEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKY--KIKPGDVE 126
           +  +E+L     +WG+  L+NHG+ + L+ ++K    EF+ L +EEK KY      G ++
Sbjct: 64  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123

Query: 127 GYG--AVARSDGKLDWGDRVYMITNPIQRRKSHL-PELPSSLRKTLESYFLELQKFALKL 183
           GYG      + G+L+W D  + +  P ++R   + P+ PS   +    Y   L+  A K+
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183

Query: 184 LGLVMGKALNIESKEIEEIF---EDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILH 240
               +   L +E   +E+     E+ +  +++NYYP CP+PE+ +G+  H+D +A+T + 
Sbjct: 184 FKA-LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242

Query: 241 QVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISI 300
             N V GL++  +G W+ A+ +P+++V+++GD LEI+SNG Y+S+ HR  VN  K RIS 
Sbjct: 243 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301

Query: 301 AFFVGPKFDAQV-GPLTSLINPDNPPLFRRVLMEEYVKTFFSRKLNGKSHLEYMKIE 356
           A F  P  D  V  PL  +++ ++P  F      ++++     KL GK   E +  +
Sbjct: 302 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.43
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.47
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.58
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 84.59
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 84.38
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 83.37
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 82.8
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-84  Score=624.68  Aligned_cols=332  Identities=31%  Similarity=0.607  Sum_probs=296.0

Q ss_pred             cccchHHHHHCCCCCCCCCccCCCCCCCCCCCC--CC---CCCCCceEeCCCCCCCChH--HHHHHHHHHHHHhhceeEE
Q 018099           15 SVLSVKELMKNHKITVPESYLRLDQEPPNPLNG--TH---VPASIPTFDLESLLSKEDK--EFQLEKLHAICKEWGIFQL   87 (361)
Q Consensus        15 ~~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~~~--~~---~~~~iPvIDls~l~~~d~~--~~~~~~l~~A~~~~GfF~v   87 (361)
                      ++++||+|+++++.+||++|++|+++++.....  ..   ...+||||||+.+.+++..  .+++++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            467899999999999999999998887753210  00   1246999999998765542  3367999999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCcccCcc--cccCCCccCcccccccccccccccCCCC-CCCc
Q 018099           88 VNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKP--GDVEGYGA--VARSDGKLDWGDRVYMITNPIQRRKSHL-PELP  162 (361)
Q Consensus        88 ~nHGI~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~-P~~~  162 (361)
                      +||||+.++++++++++++||+||.|+|+++....  ..++||+.  .....+..||+|.|++...|......+. |+.+
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999999999999999999999999999998754  36889987  2344567899999999876643334455 9889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhc---ccceeeeeeccCCCCCCCcccCccccccCCceeEE
Q 018099          163 SSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFE---DGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITIL  239 (361)
Q Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTiL  239 (361)
                      ++||+++++|+++|.+|+.+||++ |+++|||++++|.+.+.   ...+.||+||||||++++..+|+++|||+|+||||
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~-la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKA-LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            999999999999999999999999 99999999999999987   46789999999999999999999999999999999


Q ss_pred             eecCCCCCeeEeeCCeEEEcccCCCcEEEEechhhHHHhCCceecccceeecCCCCCeeEEEEeecCCCCC-eeecCccc
Q 018099          240 HQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDA-QVGPLTSL  318 (361)
Q Consensus       240 ~q~~~v~GLqV~~~g~W~~V~p~pg~lvVniGd~lq~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~pl~~l  318 (361)
                      +| |+++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++++.++|||++||++|+.|+ +|.|++++
T Consensus       242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99 68999999999999999999999999999999999999999999999999889999999999999999 99999999


Q ss_pred             cCCCCCCCCCCccHHHHHHHHHhccCCCCc
Q 018099          319 INPDNPPLFRRVLMEEYVKTFFSRKLNGKS  348 (361)
Q Consensus       319 v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~  348 (361)
                      +++++|++|++++|+||++.+++++++|+.
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            999999999999999999999988877764
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-70
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-64
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-54
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-42
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  219 bits (558), Expect = 6e-70
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 13/309 (4%)

Query: 53  SIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPM 112
           + P   L+ +   E     +E +   C+ WG F+LVNHG+   ++  ++      Y+  M
Sbjct: 2   NFPIISLDKVNGVERAAT-MEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCM 60

Query: 113 EEKMKYKIKPGDVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESY 172
           E++ K  +    +EG          +DW    ++  +      S +P+L    R+ +  +
Sbjct: 61  EQRFKELVASKALEGVQ---AEVTDMDWESTFFL-KHLPISNISEVPDLDEEYREVMRDF 116

Query: 173 FLELQKFALKLLGLVMGKALNIESKEIEEIF---EDGMQSVRMNYYPPCPKPEVVMGLTP 229
              L+K A +LL L+  + L +E   ++  F   +      +++ YPPCPKP+++ GL  
Sbjct: 117 AKRLEKLAEELLDLLC-ENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 175

Query: 230 HSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRA 289
           H+DA  I +L Q + V GL++ KDG WI    + +++VVN+GD LE+++NG Y+SV HR 
Sbjct: 176 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRV 235

Query: 290 TVNSVKERISIAFFVGPKFDAQVGPLTSLIN---PDNPPLFRRVLMEEYVKTFFSRKLNG 346
                  R+S+A F  P  DA + P  +L+     +N  ++ + + ++Y+K +   K   
Sbjct: 236 IAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQA 295

Query: 347 KS-HLEYMK 354
           K    E MK
Sbjct: 296 KEPRFEAMK 304
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.46
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.7e-79  Score=587.24  Aligned_cols=325  Identities=32%  Similarity=0.621  Sum_probs=284.5

Q ss_pred             ccchHHHHHCCCCCCCCCccCCCCCCCCCCCC-----CCCCCCCceEeCCCCCCCChH--HHHHHHHHHHHHhhceeEEe
Q 018099           16 VLSVKELMKNHKITVPESYLRLDQEPPNPLNG-----THVPASIPTFDLESLLSKEDK--EFQLEKLHAICKEWGIFQLV   88 (361)
Q Consensus        16 ~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~~~-----~~~~~~iPvIDls~l~~~d~~--~~~~~~l~~A~~~~GfF~v~   88 (361)
                      +..||+|+++|+++||++||+|++++|.+...     .....+||||||+.+.+++..  .+.+++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            56899999999999999999999998875321     123468999999999877754  23569999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCcccCcc--cccCCCccCcccccccccccccccCCCC-CCCch
Q 018099           89 NHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKP--GDVEGYGA--VARSDGKLDWGDRVYMITNPIQRRKSHL-PELPS  163 (361)
Q Consensus        89 nHGI~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~-P~~~~  163 (361)
                      ||||+.++++++++++++||+||.|+|+++....  +.+.||+.  ........+|.+.+.....+.....++. |+.++
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            9999999999999999999999999999998643  34455554  3344556677776655444444444555 88899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhc---ccceeeeeeccCCCCCCCcccCccccccCCceeEEe
Q 018099          164 SLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFE---DGMQSVRMNYYPPCPKPEVVMGLTPHSDATAITILH  240 (361)
Q Consensus       164 ~fr~~~~~y~~~~~~l~~~ll~~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTiL~  240 (361)
                      .|++.+++|+++|.+|+.+|+++ ++++||+++++|.+.+.   ...+.||++|||||+.+...+|+++|||+|+||||+
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~-la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKA-LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHH-HHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            99999999999999999999999 99999999999998864   336789999999999999999999999999999999


Q ss_pred             ecCCCCCeeEeeCCeEEEcccCCCcEEEEechhhHHHhCCceecccceeecCCCCCeeEEEEeecCCCCCee-ecCcccc
Q 018099          241 QVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFDAQV-GPLTSLI  319 (361)
Q Consensus       241 q~~~v~GLqV~~~g~W~~V~p~pg~lvVniGd~lq~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~pl~~lv  319 (361)
                      | ++++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+++|+
T Consensus       242 q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v  320 (349)
T d1gp6a_         242 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  320 (349)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             c-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHc
Confidence            9 7999999999999999999999999999999999999999999999999999999999999999999865 8999999


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhc
Q 018099          320 NPDNPPLFRRVLMEEYVKTFFSR  342 (361)
Q Consensus       320 ~~~~p~~y~~~~~~ey~~~~~~~  342 (361)
                      ++++|++|+|+|++||++.++..
T Consensus       321 ~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         321 SVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999999999987743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure