Citrus Sinensis ID: 018137
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| O23016 | 328 | Probable voltage-gated po | yes | no | 0.911 | 1.0 | 0.893 | 1e-179 | |
| Q40648 | 328 | Probable voltage-gated po | yes | no | 0.911 | 1.0 | 0.859 | 1e-171 | |
| Q27955 | 367 | Voltage-gated potassium c | yes | no | 0.902 | 0.885 | 0.489 | 2e-93 | |
| P62483 | 367 | Voltage-gated potassium c | yes | no | 0.902 | 0.885 | 0.489 | 2e-93 | |
| P62482 | 367 | Voltage-gated potassium c | yes | no | 0.902 | 0.885 | 0.489 | 2e-93 | |
| Q9PTM5 | 367 | Voltage-gated potassium c | N/A | no | 0.902 | 0.885 | 0.492 | 3e-93 | |
| Q13303 | 367 | Voltage-gated potassium c | yes | no | 0.902 | 0.885 | 0.489 | 4e-93 | |
| P63144 | 401 | Voltage-gated potassium c | no | no | 0.908 | 0.815 | 0.471 | 3e-92 | |
| Q4PJK1 | 401 | Voltage-gated potassium c | no | no | 0.908 | 0.815 | 0.471 | 3e-92 | |
| P63143 | 401 | Voltage-gated potassium c | no | no | 0.908 | 0.815 | 0.471 | 4e-92 |
| >sp|O23016|KCAB_ARATH Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana GN=KAB1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 627 bits (1616), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/328 (89%), Positives = 314/328 (95%)
Query: 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAE 92
MQYK+LG+SGL+VS LS+GAWV+FGNQLDVKEAKS+LQCCRDHGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGKSGLKVSTLSFGAWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVYANGRAE 60
Query: 93 EIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIY 152
EIMGQAIRELGW+RSDIV+STKIFWGG GPNDKGLSRKHIVEGTKASLKRLDMDYVDV+Y
Sbjct: 61 EIMGQAIRELGWRRSDIVISTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLY 120
Query: 153 CHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPE 212
CHRPD STPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWG A+RLDLVGPIVEQPE
Sbjct: 121 CHRPDASTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGAADRLDLVGPIVEQPE 180
Query: 213 YNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLAS 272
YNM +RHKVE E+LPLY+N+GIGLTTWSPLASGVLTGKYNKG+IP DSRFALENYKNLA+
Sbjct: 181 YNMFARHKVETEFLPLYTNHGIGLTTWSPLASGVLTGKYNKGAIPSDSRFALENYKNLAN 240
Query: 273 RSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAID 332
RSLVDDVL KV+ LKPIADELGV LAQLAIAWCASNPNVSSVITGAT+ESQIQENMKA+D
Sbjct: 241 RSLVDDVLRKVSGLKPIADELGVTLAQLAIAWCASNPNVSSVITGATRESQIQENMKAVD 300
Query: 333 VIPLLTPSVMDKIEAAVLSKPKRPESYR 360
VIPLLTP V+DKIE + SKPKRPESYR
Sbjct: 301 VIPLLTPIVLDKIEQVIQSKPKRPESYR 328
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Probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40648|KCAB_ORYSJ Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q27955|KCAB2_BOVIN Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P62483|KCAB2_RAT Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P62482|KCAB2_MOUSE Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9PTM5|KCAB2_XENLA Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q13303|KCAB2_HUMAN Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2 | Back alignment and function description |
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| >sp|P63144|KCAB1_RAT Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4PJK1|KCAB1_BOVIN Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P63143|KCAB1_MOUSE Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 449432454 | 328 | PREDICTED: probable voltage-gated potass | 0.911 | 1.0 | 0.935 | 0.0 | |
| 255554204 | 328 | potassium channel beta, putative [Ricinu | 0.911 | 1.0 | 0.929 | 0.0 | |
| 118485072 | 328 | unknown [Populus trichocarpa] | 0.911 | 1.0 | 0.923 | 0.0 | |
| 224057628 | 328 | predicted protein [Populus trichocarpa] | 0.911 | 1.0 | 0.926 | 0.0 | |
| 225433414 | 328 | PREDICTED: probable voltage-gated potass | 0.911 | 1.0 | 0.923 | 0.0 | |
| 356575166 | 328 | PREDICTED: probable voltage-gated potass | 0.911 | 1.0 | 0.911 | 1e-180 | |
| 356534836 | 328 | PREDICTED: probable voltage-gated potass | 0.911 | 1.0 | 0.908 | 1e-180 | |
| 3402279 | 330 | putative beta-subunit of K+ channels [So | 0.913 | 0.996 | 0.899 | 1e-178 | |
| 297843278 | 328 | hypothetical protein ARALYDRAFT_470455 [ | 0.911 | 1.0 | 0.896 | 1e-177 | |
| 15219795 | 328 | potassium channel beta subunit 1 [Arabid | 0.911 | 1.0 | 0.893 | 1e-177 |
| >gi|449432454|ref|XP_004134014.1| PREDICTED: probable voltage-gated potassium channel subunit beta-like [Cucumis sativus] gi|449487512|ref|XP_004157663.1| PREDICTED: probable voltage-gated potassium channel subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/328 (93%), Positives = 323/328 (98%)
Query: 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAE 92
MQYK+LGRSGL+VSQLSYGAWVSFGNQLDV+EAKSLLQCCRDHGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDVREAKSLLQCCRDHGVNFFDNAEVYANGRAE 60
Query: 93 EIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIY 152
EIMGQAIRELGWKRSDIVVSTKIFWGG GPNDKGLSRKHIVEGTKASLKRLDM+YVDVIY
Sbjct: 61 EIMGQAIRELGWKRSDIVVSTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMEYVDVIY 120
Query: 153 CHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPE 212
CHRPD+STPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIA+RLDLVGPIVEQPE
Sbjct: 121 CHRPDSSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIADRLDLVGPIVEQPE 180
Query: 213 YNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLAS 272
YN+LSRHKVE+E+LPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLA+
Sbjct: 181 YNLLSRHKVESEFLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLAN 240
Query: 273 RSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAID 332
RSLVDDVL KVN LKPIADELGVPL+QLAIAWCA+NPNVSSVITGATKESQIQENMKA+D
Sbjct: 241 RSLVDDVLRKVNGLKPIADELGVPLSQLAIAWCAANPNVSSVITGATKESQIQENMKAVD 300
Query: 333 VIPLLTPSVMDKIEAAVLSKPKRPESYR 360
VIPLLTP+VM+KIEA V SKPKRPES+R
Sbjct: 301 VIPLLTPAVMEKIEAVVQSKPKRPESFR 328
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554204|ref|XP_002518142.1| potassium channel beta, putative [Ricinus communis] gi|223542738|gb|EEF44275.1| potassium channel beta, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|118485072|gb|ABK94399.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224057628|ref|XP_002299286.1| predicted protein [Populus trichocarpa] gi|222846544|gb|EEE84091.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225433414|ref|XP_002285645.1| PREDICTED: probable voltage-gated potassium channel subunit beta [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356575166|ref|XP_003555713.1| PREDICTED: probable voltage-gated potassium channel subunit beta-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534836|ref|XP_003535957.1| PREDICTED: probable voltage-gated potassium channel subunit beta-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|3402279|emb|CAA04451.1| putative beta-subunit of K+ channels [Solanum tuberosum] | Back alignment and taxonomy information |
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| >gi|297843278|ref|XP_002889520.1| hypothetical protein ARALYDRAFT_470455 [Arabidopsis lyrata subsp. lyrata] gi|297335362|gb|EFH65779.1| hypothetical protein ARALYDRAFT_470455 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15219795|ref|NP_171963.1| potassium channel beta subunit 1 [Arabidopsis thaliana] gi|75277353|sp|O23016.1|KCAB_ARATH RecName: Full=Probable voltage-gated potassium channel subunit beta; AltName: Full=K(+) channel subunit beta; AltName: Full=Potassium voltage beta 1; Short=KV-beta1 gi|2494112|gb|AAB80621.1| Match to Arabidopsis ATHKCP (gb|L40948). ESTs gb|ATTS0764, gb|R90646, gb|AA389809, gb|ATTS2615 come from this gene [Arabidopsis thaliana] gi|3126868|gb|AAC15999.1| potassium channel beta subunit homolog [Arabidopsis thaliana] gi|15292775|gb|AAK92756.1| putative K+ channel, beta subunit [Arabidopsis thaliana] gi|20259255|gb|AAM14363.1| putative potassium channel beta subunit [Arabidopsis thaliana] gi|332189613|gb|AEE27734.1| potassium channel beta subunit 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2197793 | 328 | KAB1 "AT1G04690" [Arabidopsis | 0.911 | 1.0 | 0.893 | 5.7e-162 | |
| ASPGD|ASPL0000059184 | 344 | AN0610 [Emericella nidulans (t | 0.894 | 0.936 | 0.521 | 1.1e-89 | |
| ASPGD|ASPL0000075615 | 341 | AN8597 [Emericella nidulans (t | 0.886 | 0.935 | 0.532 | 8.6e-88 | |
| UNIPROTKB|E2R6E8 | 398 | KCNAB2 "Uncharacterized protei | 0.908 | 0.821 | 0.489 | 3.7e-87 | |
| UNIPROTKB|F1NDH6 | 367 | KCNAB2 "Uncharacterized protei | 0.902 | 0.885 | 0.492 | 6e-87 | |
| UNIPROTKB|F1NE69 | 368 | KCNAB2 "Uncharacterized protei | 0.902 | 0.883 | 0.492 | 6e-87 | |
| UNIPROTKB|Q58HC3 | 353 | KCNAB2 "Potassium voltage-gate | 0.908 | 0.926 | 0.489 | 9.9e-87 | |
| UNIPROTKB|Q27955 | 367 | KCNAB2 "Voltage-gated potassiu | 0.902 | 0.885 | 0.489 | 1.6e-86 | |
| UNIPROTKB|J9P0G9 | 367 | KCNAB2 "Uncharacterized protei | 0.902 | 0.885 | 0.489 | 1.6e-86 | |
| MGI|MGI:109239 | 367 | Kcnab2 "potassium voltage-gate | 0.902 | 0.885 | 0.489 | 2e-86 |
| TAIR|locus:2197793 KAB1 "AT1G04690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 293/328 (89%), Positives = 314/328 (95%)
Query: 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAE 92
MQYK+LG+SGL+VS LS+GAWV+FGNQLDVKEAKS+LQCCRDHGVNFFDNAEVYANGRAE
Sbjct: 1 MQYKNLGKSGLKVSTLSFGAWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVYANGRAE 60
Query: 93 EIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIY 152
EIMGQAIRELGW+RSDIV+STKIFWGG GPNDKGLSRKHIVEGTKASLKRLDMDYVDV+Y
Sbjct: 61 EIMGQAIRELGWRRSDIVISTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLY 120
Query: 153 CHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPE 212
CHRPD STPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWG A+RLDLVGPIVEQPE
Sbjct: 121 CHRPDASTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGAADRLDLVGPIVEQPE 180
Query: 213 YNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLAS 272
YNM +RHKVE E+LPLY+N+GIGLTTWSPLASGVLTGKYNKG+IP DSRFALENYKNLA+
Sbjct: 181 YNMFARHKVETEFLPLYTNHGIGLTTWSPLASGVLTGKYNKGAIPSDSRFALENYKNLAN 240
Query: 273 RSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAID 332
RSLVDDVL KV+ LKPIADELGV LAQLAIAWCASNPNVSSVITGAT+ESQIQENMKA+D
Sbjct: 241 RSLVDDVLRKVSGLKPIADELGVTLAQLAIAWCASNPNVSSVITGATRESQIQENMKAVD 300
Query: 333 VIPLLTPSVMDKIEAAVLSKPKRPESYR 360
VIPLLTP V+DKIE + SKPKRPESYR
Sbjct: 301 VIPLLTPIVLDKIEQVIQSKPKRPESYR 328
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| ASPGD|ASPL0000059184 AN0610 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000075615 AN8597 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R6E8 KCNAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NDH6 KCNAB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NE69 KCNAB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q58HC3 KCNAB2 "Potassium voltage-gated channel, shaker-related subfamily, beta member 2, transcript variant 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q27955 KCNAB2 "Voltage-gated potassium channel subunit beta-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P0G9 KCNAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:109239 Kcnab2 "potassium voltage-gated channel, shaker-related subfamily, beta member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q40648 | KCAB_ORYSJ | No assigned EC number | 0.8597 | 0.9111 | 1.0 | yes | no |
| O59826 | KCAB_SCHPO | No assigned EC number | 0.4892 | 0.8805 | 0.9215 | yes | no |
| O23016 | KCAB_ARATH | No assigned EC number | 0.8932 | 0.9111 | 1.0 | yes | no |
| P62482 | KCAB2_MOUSE | No assigned EC number | 0.4893 | 0.9027 | 0.8855 | yes | no |
| P62483 | KCAB2_RAT | No assigned EC number | 0.4893 | 0.9027 | 0.8855 | yes | no |
| Q27955 | KCAB2_BOVIN | No assigned EC number | 0.4893 | 0.9027 | 0.8855 | yes | no |
| Q13303 | KCAB2_HUMAN | No assigned EC number | 0.4893 | 0.9027 | 0.8855 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_I0454 | SubName- Full=Putative uncharacterized protein; (329 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| TIGR01293 | 317 | TIGR01293, Kv_beta, voltage-dependent potassium ch | 1e-117 | |
| COG0667 | 316 | COG0667, Tas, Predicted oxidoreductases (related t | 1e-101 | |
| cd06660 | 285 | cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) | 1e-100 | |
| pfam00248 | 277 | pfam00248, Aldo_ket_red, Aldo/keto reductase famil | 3e-76 | |
| PRK09912 | 346 | PRK09912, PRK09912, L-glyceraldehyde 3-phosphate r | 6e-55 | |
| COG0656 | 280 | COG0656, ARA1, Aldo/keto reductases, related to di | 7e-41 | |
| PRK10625 | 346 | PRK10625, tas, putative aldo-keto reductase; Provi | 6e-28 | |
| COG4989 | 298 | COG4989, COG4989, Predicted oxidoreductase [Genera | 2e-25 | |
| PLN02587 | 314 | PLN02587, PLN02587, L-galactose dehydrogenase | 4e-23 | |
| COG1453 | 391 | COG1453, COG1453, Predicted oxidoreductases of the | 7e-16 | |
| PRK11172 | 267 | PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B | 8e-10 | |
| PRK11565 | 275 | PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A | 1e-07 | |
| PRK10376 | 290 | PRK10376, PRK10376, putative oxidoreductase; Provi | 2e-06 |
| >gnl|CDD|213602 TIGR01293, Kv_beta, voltage-dependent potassium channel beta subunit, animal | Back alignment and domain information |
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Score = 343 bits (880), Expect = e-117
Identities = 155/316 (49%), Positives = 223/316 (70%), Gaps = 4/316 (1%)
Query: 35 YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEI 94
Y++LG+SGLRVS L G WV+FG Q+ + A+ LL ++G+N FD AEVYA G+AE +
Sbjct: 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVV 60
Query: 95 MGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCH 154
+G +++ GW+RS V++TKIFWGG+ ++GLSRKHI+EG KASL+RL ++YVD+++ +
Sbjct: 61 LGNILKKKGWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFAN 120
Query: 155 RPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYN 214
RPD +TP+EETVRAM YVI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+
Sbjct: 121 RPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYH 180
Query: 215 MLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRS 274
M R KVE + LY G+G TWSPLA G+++GKY+ IPP SR L+ Y+ L +
Sbjct: 181 MFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYD-SGIPPYSRATLKGYQWLKDKI 239
Query: 275 LVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAI 331
L ++ + RLK IA+ LG L QLAIAWC N VSSV+ GA+ Q+ EN+ ++
Sbjct: 240 LSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSL 299
Query: 332 DVIPLLTPSVMDKIEA 347
V+P L+ S++ +I++
Sbjct: 300 QVLPKLSSSIIHEIDS 315
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This model describes the conserved core region of the beta subunit of voltage-gated potassium (Kv) channels in animals. Amino-terminal regions differ substantially, in part by alternative splicing, and are not included in the model. Four beta subunits form a complex with four alpha subunit cytoplasmic (T1) regions, and the structure of the complex is solved. The beta subunit belongs to a family of NAD(P)H-dependent aldo-keto reductases, binds NADPH, and couples voltage-gated channel activity to the redox potential of the cell. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs. Length = 317 |
| >gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] | Back alignment and domain information |
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| >gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
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| >gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family | Back alignment and domain information |
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| >gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase; Provisional | Back alignment and domain information |
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| >gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional | Back alignment and domain information |
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| >gnl|CDD|227322 COG4989, COG4989, Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|178198 PLN02587, PLN02587, L-galactose dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236676 PRK10376, PRK10376, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| KOG1575 | 336 | consensus Voltage-gated shaker-like K+ channel, su | 100.0 | |
| COG0667 | 316 | Tas Predicted oxidoreductases (related to aryl-alc | 100.0 | |
| TIGR01293 | 317 | Kv_beta voltage-dependent potassium channel beta s | 100.0 | |
| PRK09912 | 346 | L-glyceraldehyde 3-phosphate reductase; Provisiona | 100.0 | |
| PRK10625 | 346 | tas putative aldo-keto reductase; Provisional | 100.0 | |
| COG0656 | 280 | ARA1 Aldo/keto reductases, related to diketogulona | 100.0 | |
| PLN02587 | 314 | L-galactose dehydrogenase | 100.0 | |
| cd06660 | 285 | Aldo_ket_red Aldo-keto reductases (AKRs) are a sup | 100.0 | |
| PF00248 | 283 | Aldo_ket_red: Aldo/keto reductase family; InterPro | 100.0 | |
| PRK10376 | 290 | putative oxidoreductase; Provisional | 100.0 | |
| PRK11172 | 267 | dkgB 2,5-diketo-D-gluconate reductase B; Provision | 100.0 | |
| KOG1577 | 300 | consensus Aldo/keto reductase family proteins [Gen | 100.0 | |
| COG4989 | 298 | Predicted oxidoreductase [General function predict | 100.0 | |
| PRK11565 | 275 | dkgA 2,5-diketo-D-gluconate reductase A; Provision | 100.0 | |
| PRK14863 | 292 | bifunctional regulator KidO; Provisional | 100.0 | |
| COG1453 | 391 | Predicted oxidoreductases of the aldo/keto reducta | 100.0 | |
| KOG1576 | 342 | consensus Predicted oxidoreductase [Energy product | 100.0 | |
| KOG3023 | 285 | consensus Glutamate-cysteine ligase regulatory sub | 98.03 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 88.33 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 87.86 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 87.48 | |
| PRK07945 | 335 | hypothetical protein; Provisional | 83.85 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.67 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 83.47 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 81.27 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 80.82 |
| >KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-69 Score=490.73 Aligned_cols=322 Identities=42% Similarity=0.709 Sum_probs=287.1
Q ss_pred ccCCceeecCCCCcccCcccccc--ccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC
Q 018137 30 NYKMQYKHLGRSGLRVSQLSYGA--WVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS 107 (360)
Q Consensus 30 ~~~m~~r~lg~tg~~vs~lglG~--~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 107 (360)
...|.++++|++|++||+||||| |..++...+++++++++++|+|+|+|+||||++||+|.||+++|+|+++++.+|+
T Consensus 9 ~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 9 ELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 34599999999999999999999 4556666899999999999999999999999999999999999999999988999
Q ss_pred cEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCC
Q 018137 108 DIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 108 ~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~ 187 (360)
+|+|+||+++....+...+.+...+...++.|++|||++|||+||+||+|+.+++++++++|.+|+++|+|++||+|+++
T Consensus 89 ~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 89 KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999999876533335678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCC-CCCCC-ccchh
Q 018137 188 AQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGS-IPPDS-RFALE 265 (360)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~-~p~~~-~~~~~ 265 (360)
.+++.++...++ ++++++|++||++.|..++.+++++|++.||++++|+||++|+|||++.... .|.+. ++...
T Consensus 169 a~~I~~a~~~~~----~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~ 244 (336)
T KOG1575|consen 169 AEEIREAHAVAP----IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFL 244 (336)
T ss_pred HHHHHHHHHhcC----CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccc
Confidence 999999999876 6799999999999999888889999999999999999999999999987652 23321 12222
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHH
Q 018137 266 NYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKI 345 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l 345 (360)
.+..++... ..+...++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.. .|+++++..|
T Consensus 245 ~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~--~Lt~e~~~~l 320 (336)
T KOG1575|consen 245 GLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSV--KLTPEEIKEL 320 (336)
T ss_pred ccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhc--cCCHHHHHHH
Confidence 222222121 456777899999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHccCCCCCCCC
Q 018137 346 EAAVLSKPKRPESY 359 (360)
Q Consensus 346 ~~~~~~~~~~~~~~ 359 (360)
++..+....++.+|
T Consensus 321 ~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 321 EEIIDKILGFGPRS 334 (336)
T ss_pred HHhhccccCcCCCC
Confidence 99999998888776
|
|
| >COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal | Back alignment and domain information |
|---|
| >PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional | Back alignment and domain information |
|---|
| >PRK10625 tas putative aldo-keto reductase; Provisional | Back alignment and domain information |
|---|
| >COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02587 L-galactose dehydrogenase | Back alignment and domain information |
|---|
| >cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
|---|
| >PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others [] | Back alignment and domain information |
|---|
| >PRK10376 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional | Back alignment and domain information |
|---|
| >KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only] | Back alignment and domain information |
|---|
| >COG4989 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional | Back alignment and domain information |
|---|
| >PRK14863 bifunctional regulator KidO; Provisional | Back alignment and domain information |
|---|
| >COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1576 consensus Predicted oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07945 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 2a79_A | 333 | Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu | 1e-94 | ||
| 3lut_A | 367 | A Structural Model For The Full-Length Shaker Potas | 1e-94 | ||
| 1exb_A | 332 | Structure Of The Cytoplasmic Beta Subunit-T1 Assemb | 1e-94 | ||
| 3eau_A | 327 | Voltage-Dependent K+ Channel Beta Subunit In Comple | 2e-93 | ||
| 1zsx_A | 347 | Crystal Structure Of Human Potassium Channel Kv Bet | 2e-93 | ||
| 1qrq_A | 325 | Structure Of A Voltage-Dependent K+ Channel Beta Su | 2e-93 | ||
| 3eb4_A | 327 | Voltage-Dependent K+ Channel Beta Subunit (I211r) I | 1e-92 | ||
| 3eb3_A | 327 | Voltage-Dependent K+ Channel Beta Subunit (W121a) I | 3e-92 | ||
| 4aub_A | 366 | The Complex Structure Of The Bacterial Aldo-Keto Re | 5e-48 | ||
| 3n6q_A | 346 | Crystal Structure Of Yghz From E. Coli Length = 346 | 6e-48 | ||
| 3erp_A | 353 | Structure Of Idp01002, A Putative Oxidoreductase Fr | 1e-47 | ||
| 1pyf_A | 312 | Structure Of Nadph-Dependent Family 11 Aldo-Keto Re | 6e-36 | ||
| 3uyi_A | 337 | Crystal Structure Of Perakine Reductase, Founder Me | 1e-30 | ||
| 3v0u_A | 338 | Crystal Structure Of Perakine Reductase, Founder Me | 4e-30 | ||
| 3v0t_A | 337 | Crystal Structure Of Perakine Reductase, Founder Me | 4e-30 | ||
| 3v0s_A | 337 | Crystal Structure Of Perakine Reductase, Founder Me | 6e-30 | ||
| 1ynp_A | 317 | Aldo-keto Reductase Akr11c1 From Bacillus Haloduran | 4e-25 | ||
| 1pz1_A | 333 | Structure Of Nadph-Dependent Family 11 Aldo-Keto Re | 9e-25 | ||
| 1gve_A | 327 | Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Live | 1e-22 | ||
| 1lqa_A | 346 | Tas Protein From Escherichia Coli In Complex With N | 5e-22 | ||
| 2c91_A | 338 | Mouse Succinic Semialdehyde Reductase, Akr7a5 Lengt | 2e-21 | ||
| 2clp_A | 347 | Crystal Structure Of Human Aflatoxin B1 Aldehyde Re | 6e-21 | ||
| 2bp1_B | 360 | Structure Of The Aflatoxin Aldehyde Reductase In Co | 4e-20 | ||
| 3n2t_A | 348 | Structure Of The Glycerol Dehydrogenase Akr11b4 Fro | 9e-18 | ||
| 3o0k_A | 283 | Crystal Structure Of AldoKETO REDUCTASE FROM BRUCEL | 2e-10 | ||
| 4fzi_A | 290 | Crystal Structure Of Prostaglandin F Synthase From | 6e-10 | ||
| 3up8_A | 298 | Crystal Structure Of A Putative 2,5-Diketo-D-Glucon | 8e-10 | ||
| 3h7u_A | 335 | Crystal Structure Of The Plant Stress-Response Enzy | 8e-09 | ||
| 1vbj_A | 281 | The Crystal Structure Of Prostaglandin F Synthase F | 9e-09 | ||
| 4exa_A | 292 | Crystal Structure Of The Pa4992, The Putative Aldo- | 2e-08 | ||
| 3krb_A | 334 | Structure Of Aldose Reductase From Giardia Lamblia | 2e-08 | ||
| 1qwk_A | 317 | Structural Genomics Of Caenorhabditis Elegans: Hypo | 4e-08 | ||
| 1og6_A | 298 | Ydhf, An Aldo-keto Reductase From E.coli Complexed | 5e-08 | ||
| 1ur3_M | 319 | Crystal Structure Of The Apo Form Of The E.Coli Ydh | 2e-07 | ||
| 3h7r_A | 331 | Crystal Structure Of The Plant Stress-Response Enzy | 1e-06 | ||
| 2wzm_A | 283 | Crystal Structure Of A Mycobacterium Aldo-Keto Redu | 2e-06 | ||
| 4f40_A | 288 | X-Ray Crystal Structure Of Apo Prostaglandin F Synt | 2e-05 | ||
| 3b3d_A | 314 | B.Subtilis Ytbe Length = 314 | 4e-05 | ||
| 1mzr_A | 296 | Structure Of Dkga From E.Coli At 2.13 A Resolution | 5e-05 | ||
| 3f7j_A | 276 | B.Subtilis Yvgn Length = 276 | 7e-05 | ||
| 3d3f_A | 275 | Crystal Structure Of Yvgn And Cofactor Nadph From B | 7e-05 | ||
| 1vp5_A | 298 | Crystal Structure Of 2,5-diketo-d-gluconic Acid Red | 7e-05 | ||
| 3cv6_A | 323 | The Crystal Structure Of Mouse 17-Alpha Hydroxyster | 9e-05 | ||
| 2ipf_A | 318 | Crystal Structure Of 17alpha-Hydroxysteroid Dehydro | 1e-04 | ||
| 3fjn_A | 323 | The Crystal Structure Of 17-Alpha Hydroxysteroid De | 1e-04 | ||
| 2he5_A | 323 | Crystal Structure Of 17alpha-Hydroxysteroid Dehydro | 1e-04 | ||
| 2ipg_A | 319 | Crystal Structure Of 17alpha-Hydroxysteroid Dehydro | 1e-04 | ||
| 2ipj_A | 321 | Crystal Structure Of H3alpha-Hydroxysteroid Dehydro | 3e-04 | ||
| 1j96_A | 323 | Human 3alpha-Hsd Type 3 In Ternary Complex With Nad | 3e-04 | ||
| 1ihi_A | 323 | Crystal Structure Of Human Type Iii 3-Alpha-Hydroxy | 3e-04 | ||
| 1xjb_A | 325 | Crystal Structure Of Human Type 3 3alpha-Hydroxyste | 3e-04 | ||
| 1zgd_A | 312 | Chalcone Reductase Complexed With Nadp+ At 1.7 Angs | 7e-04 | ||
| 1mrq_A | 323 | Crystal Structure Of Human 20alpha-hsd In Ternary C | 7e-04 | ||
| 3c3u_A | 323 | Crystal Structure Of Akr1c1 In Complex With Nadp An | 7e-04 | ||
| 3gug_A | 323 | Crystal Structure Of Akr1c1 L308v Mutant In Complex | 7e-04 |
| >pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 333 | Back alignment and structure |
|
| >pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 367 | Back alignment and structure |
| >pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 332 | Back alignment and structure |
| >pdb|3EAU|A Chain A, Voltage-Dependent K+ Channel Beta Subunit In Complex With Cortisone Length = 327 | Back alignment and structure |
| >pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv Beta-Subunit (Kcnab2) Length = 347 | Back alignment and structure |
| >pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit Length = 325 | Back alignment and structure |
| >pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In Complex With Cortisone Length = 327 | Back alignment and structure |
| >pdb|3EB3|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (W121a) In Complex With Cortisone Length = 327 | Back alignment and structure |
| >pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase Akr14a1 With Nadp And Citrate Length = 366 | Back alignment and structure |
| >pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli Length = 346 | Back alignment and structure |
| >pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And Essential Gene Of Salmonella Typhimurium Length = 353 | Back alignment and structure |
| >pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase Akr11a(Apo) Length = 312 | Back alignment and structure |
| >pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding Length = 337 | Back alignment and structure |
| >pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding Length = 338 | Back alignment and structure |
| >pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding Length = 337 | Back alignment and structure |
| >pdb|3V0S|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding Length = 337 | Back alignment and structure |
| >pdb|1YNP|A Chain A, Aldo-keto Reductase Akr11c1 From Bacillus Halodurans (apo Form) Length = 317 | Back alignment and structure |
| >pdb|1PZ1|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase Akr11b(Holo) Length = 333 | Back alignment and structure |
| >pdb|1GVE|A Chain A, Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Liver Length = 327 | Back alignment and structure |
| >pdb|1LQA|A Chain A, Tas Protein From Escherichia Coli In Complex With Nadph Length = 346 | Back alignment and structure |
| >pdb|2C91|A Chain A, Mouse Succinic Semialdehyde Reductase, Akr7a5 Length = 338 | Back alignment and structure |
| >pdb|2CLP|A Chain A, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase Member 3 Length = 347 | Back alignment and structure |
| >pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From Gluconobacter Oxydans Length = 348 | Back alignment and structure |
| >pdb|3O0K|A Chain A, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA MELITENSIS Length = 283 | Back alignment and structure |
| >pdb|4FZI|A Chain A, Crystal Structure Of Prostaglandin F Synthase From Trypanosoma Cruzi Length = 290 | Back alignment and structure |
| >pdb|3UP8|A Chain A, Crystal Structure Of A Putative 2,5-Diketo-D-Gluconic Acid Reductase B Length = 298 | Back alignment and structure |
| >pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme Akr4c9 Length = 335 | Back alignment and structure |
| >pdb|1VBJ|A Chain A, The Crystal Structure Of Prostaglandin F Synthase From Trypanosoma Brucei Length = 281 | Back alignment and structure |
| >pdb|4EXA|A Chain A, Crystal Structure Of The Pa4992, The Putative Aldo-keto Reductase From Pseudomona Aeruginosa Length = 292 | Back alignment and structure |
| >pdb|3KRB|A Chain A, Structure Of Aldose Reductase From Giardia Lamblia At 1.75a Resolution Length = 334 | Back alignment and structure |
| >pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Hypothetical 35.2 Kda Protein (Aldose Reductase Family Member) Length = 317 | Back alignment and structure |
| >pdb|1OG6|A Chain A, Ydhf, An Aldo-keto Reductase From E.coli Complexed With Nadph Length = 298 | Back alignment and structure |
| >pdb|1UR3|M Chain M, Crystal Structure Of The Apo Form Of The E.Coli Ydhf Protein Length = 319 | Back alignment and structure |
| >pdb|3H7R|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme Akr4c8 Length = 331 | Back alignment and structure |
| >pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase In Its Apo And Liganded Form Length = 283 | Back alignment and structure |
| >pdb|4F40|A Chain A, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase From Leishmania Major Friedlin Length = 288 | Back alignment and structure |
| >pdb|3B3D|A Chain A, B.Subtilis Ytbe Length = 314 | Back alignment and structure |
| >pdb|1MZR|A Chain A, Structure Of Dkga From E.Coli At 2.13 A Resolution Solved By Molecular Replacement Length = 296 | Back alignment and structure |
| >pdb|3F7J|A Chain A, B.Subtilis Yvgn Length = 276 | Back alignment and structure |
| >pdb|3D3F|A Chain A, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus Subtilis Length = 275 | Back alignment and structure |
| >pdb|1VP5|A Chain A, Crystal Structure Of 2,5-diketo-d-gluconic Acid Reductase (tm1009) From Thermotoga Maritima At 2.40 A Resolution Length = 298 | Back alignment and structure |
| >pdb|3CV6|A Chain A, The Crystal Structure Of Mouse 17-Alpha Hydroxysteroid Dehydrogenase Gg225.226pp Mutant In Complex With Inhibitor And Cofactor Nadp+. Length = 323 | Back alignment and structure |
| >pdb|2IPF|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase In Complex With Nadp+ And Epi-Testosterone Length = 318 | Back alignment and structure |
| >pdb|3FJN|A Chain A, The Crystal Structure Of 17-Alpha Hydroxysteroid Dehydrogenase Y224d Mutant. Length = 323 | Back alignment and structure |
| >pdb|2HE5|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase In Binary Complex With Nadp(H) In An Open Conformation Length = 323 | Back alignment and structure |
| >pdb|2IPG|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase Mutant K31a In Complex With Nadp+ And Epi-Testosterone Length = 319 | Back alignment and structure |
| >pdb|2IPJ|A Chain A, Crystal Structure Of H3alpha-Hydroxysteroid Dehydrogenase Type 3 Mutant Y24a In Complex With Nadp+ And Epi-Testosterone Length = 321 | Back alignment and structure |
| >pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And Testosterone Length = 323 | Back alignment and structure |
| >pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2) COMPLEXED With Nadp+ And Ursodeoxycholate Length = 323 | Back alignment and structure |
| >pdb|1XJB|A Chain A, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid Dehydrogenase In Complex With Nadp(H), Citrate And Acetate Molecules Length = 325 | Back alignment and structure |
| >pdb|1ZGD|A Chain A, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom Resolution Length = 312 | Back alignment and structure |
| >pdb|1MRQ|A Chain A, Crystal Structure Of Human 20alpha-hsd In Ternary Complex With Nadp And 20alpha-hydroxy-progesterone Length = 323 | Back alignment and structure |
| >pdb|3C3U|A Chain A, Crystal Structure Of Akr1c1 In Complex With Nadp And 3,5- Dichlorosalicylic Acid Length = 323 | Back alignment and structure |
| >pdb|3GUG|A Chain A, Crystal Structure Of Akr1c1 L308v Mutant In Complex With Nadp And 3,5-Dichlorosalicylic Acid Length = 323 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus} Length = 367 | Back alignment and structure |
|---|
Score = 569 bits (1468), Expect = 0.0
Identities = 161/334 (48%), Positives = 233/334 (69%), Gaps = 4/334 (1%)
Query: 30 NYKMQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANG 89
Y++LG+SGLRVS L G WV+FG Q+ + A+ L+ D+G+N FD AEVYA G
Sbjct: 34 RQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAG 93
Query: 90 RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVD 149
+AE ++G I++ GW+RS +V++TKIFWGG+ ++GLSRKHI+EG KASL+RL ++YVD
Sbjct: 94 KAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVD 153
Query: 150 VIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVE 209
V++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI E
Sbjct: 154 VVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICE 213
Query: 210 QPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKN 269
Q EY+M R KVE + L+ G+G TWSPLA G+++GKY+ G IPP SR +L+ Y+
Sbjct: 214 QAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQW 272
Query: 270 LASRSLVDD---VLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQE 326
L + L ++ K+ L+ IA+ LG L QLAIAWC N VSSV+ GA+ Q+ E
Sbjct: 273 LKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLME 332
Query: 327 NMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 360
N+ AI V+P L+ S++ +I++ + +KP + YR
Sbjct: 333 NIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366
|
| >3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* Length = 327 | Back alignment and structure |
|---|
| >3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
| >3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} Length = 353 | Back alignment and structure |
|---|
| >1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A* Length = 327 | Back alignment and structure |
|---|
| >1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 Length = 333 | Back alignment and structure |
|---|
| >1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A* Length = 317 | Back alignment and structure |
|---|
| >1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A* Length = 312 | Back alignment and structure |
|---|
| >1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 Length = 346 | Back alignment and structure |
|---|
| >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348 | Back alignment and structure |
|---|
| >1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A* Length = 319 | Back alignment and structure |
|---|
| >3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A* Length = 337 | Back alignment and structure |
|---|
| >3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti} Length = 298 | Back alignment and structure |
|---|
| >1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1 Length = 317 | Back alignment and structure |
|---|
| >3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia} Length = 334 | Back alignment and structure |
|---|
| >1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A* Length = 322 | Back alignment and structure |
|---|
| >2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A* Length = 344 | Back alignment and structure |
|---|
| >3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A* Length = 326 | Back alignment and structure |
|---|
| >1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A* Length = 323 | Back alignment and structure |
|---|
| >3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana} Length = 331 | Back alignment and structure |
|---|
| >1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ... Length = 316 | Back alignment and structure |
|---|
| >3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} Length = 324 | Back alignment and structure |
|---|
| >1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei} Length = 281 | Back alignment and structure |
|---|
| >1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ... Length = 331 | Back alignment and structure |
|---|
| >4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} Length = 288 | Back alignment and structure |
|---|
| >4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A* Length = 290 | Back alignment and structure |
|---|
| >3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana} Length = 335 | Back alignment and structure |
|---|
| >3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A* Length = 276 | Back alignment and structure |
|---|
| >3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} PDB: 3qkz_A* Length = 316 | Back alignment and structure |
|---|
| >2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A Length = 283 | Back alignment and structure |
|---|
| >1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa} Length = 312 | Back alignment and structure |
|---|
| >3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar} Length = 283 | Back alignment and structure |
|---|
| >1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1 Length = 298 | Back alignment and structure |
|---|
| >1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A* Length = 278 | Back alignment and structure |
|---|
| >1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1 Length = 296 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 3lut_A | 367 | Voltage-gated potassium channel subunit beta-2; vo | 100.0 | |
| 3eau_A | 327 | Voltage-gated potassium channel subunit beta-2; kv | 100.0 | |
| 3n6q_A | 346 | YGHZ aldo-keto reductase; TIM barrel, oxidoreducta | 100.0 | |
| 3erp_A | 353 | Putative oxidoreductase; funded by the national in | 100.0 | |
| 3n2t_A | 348 | Putative oxidoreductase; aldo/keto reductase super | 100.0 | |
| 1pyf_A | 312 | IOLS protein; beta-alpha barrel, aldo-keto reducta | 100.0 | |
| 1pz1_A | 333 | GSP69, general stress protein 69; beta-alpha barre | 100.0 | |
| 1lqa_A | 346 | TAS protein; TIM barrel, structure 2 function proj | 100.0 | |
| 3v0s_A | 337 | Perakine reductase; AKR superfamily, oxidoreductas | 100.0 | |
| 1ur3_M | 319 | Hypothetical oxidoreductase YDHF; NADP binding, al | 100.0 | |
| 2bp1_A | 360 | Aflatoxin B1 aldehyde reductase member 2; oxidored | 100.0 | |
| 1gve_A | 327 | Aflatoxin B1 aldehyde reductase member 3; oxidored | 100.0 | |
| 1ynp_A | 317 | Oxidoreductase, AKR11C1; aldo-keto reductase, NADP | 100.0 | |
| 3o0k_A | 283 | Aldo/keto reductase; ssgcid, ALS collaborative cry | 100.0 | |
| 3up8_A | 298 | Putative 2,5-diketo-D-gluconic acid reductase B; n | 100.0 | |
| 3f7j_A | 276 | YVGN protein; aldo-keto reductase, oxidoreductase; | 100.0 | |
| 3b3e_A | 310 | YVGN protein; aldo-keto reductase, oxidoreductase; | 100.0 | |
| 4gie_A | 290 | Prostaglandin F synthase; structural genomics, nia | 100.0 | |
| 2wzm_A | 283 | Aldo-keto reductase; oxidoreductase; HET: NA7; 1.6 | 100.0 | |
| 1hw6_A | 278 | 2,5-diketo-D-gluconic acid reductase; aldo-keto re | 100.0 | |
| 1vbj_A | 281 | Prostaglandin F synthase; TIM barrel, oxidoreducta | 100.0 | |
| 3ln3_A | 324 | Dihydrodiol dehydrogenase; putative reductase, str | 100.0 | |
| 1mzr_A | 296 | 2,5-diketo-D-gluconate reductase A; alpha/beta-bar | 100.0 | |
| 4f40_A | 288 | Prostaglandin F2-alpha synthase/D-arabinose dehyd; | 100.0 | |
| 3buv_A | 326 | 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reduc | 100.0 | |
| 1qwk_A | 317 | Aldose reductase, aldo-keto reductase family 1 mem | 100.0 | |
| 1afs_A | 323 | 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; | 100.0 | |
| 1vp5_A | 298 | 2,5-diketo-D-gluconic acid reductase; TM1009, stru | 100.0 | |
| 1zgd_A | 312 | Chalcone reductase; polyketide, deoxychalcone, iso | 100.0 | |
| 1mi3_A | 322 | Xylose reductase, XR; aldo-keto reductase, beta-al | 100.0 | |
| 4exb_A | 292 | Putative uncharacterized protein; aldo-keto reduct | 100.0 | |
| 1us0_A | 316 | Aldose reductase; oxidoreductase, NADP, IDD594; HE | 100.0 | |
| 1s1p_A | 331 | Aldo-keto reductase family 1 member C3; TIM-barrel | 100.0 | |
| 3o3r_A | 316 | Aldo-keto reductase family 1, member B7; aldose re | 100.0 | |
| 3h7u_A | 335 | Aldo-keto reductase; stress response, NADP, drough | 100.0 | |
| 4gac_A | 324 | Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldhe | 100.0 | |
| 3h7r_A | 331 | Aldo-keto reductase; stress response, NADP, drough | 100.0 | |
| 3b3d_A | 314 | YTBE protein, putative morphine dehydrogenase; ald | 100.0 | |
| 3krb_A | 334 | Aldose reductase; ssgcid, SBRI, emerald biostructu | 100.0 | |
| 2bgs_A | 344 | Aldose reductase; holoenzyme, aldo/keto reductase, | 100.0 | |
| 3cf4_A | 807 | Acetyl-COA decarboxylase/synthase alpha subunit; m | 97.94 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 87.57 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 85.78 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 85.04 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 84.17 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 82.67 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 82.62 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 82.42 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 81.29 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 80.2 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 80.08 |
| >3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=536.33 Aligned_cols=331 Identities=49% Similarity=0.900 Sum_probs=282.8
Q ss_pred hcccCCceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC
Q 018137 28 KQNYKMQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS 107 (360)
Q Consensus 28 ~~~~~m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 107 (360)
.....| ||+||+||++||+||||||..+|+..+.+++.++|++|+++|||+||||+.||+|.||++||++|++.+++|+
T Consensus 33 ~~~~~m-yr~lG~tg~~vs~iglGt~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 111 (367)
T 3lut_A 33 KRQLQF-YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRS 111 (367)
T ss_dssp ---CCS-EEESTTSSCEEESEEEECTTCCCCCSCHHHHHHHHHHHHHTTCCEEEEETTGGGGHHHHHHHHHHHHHTCCGG
T ss_pred cchhhc-eeecCCCCCcccceeECCccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHHhCCCCCc
Confidence 344669 9999999999999999999778878899999999999999999999999999999999999999998888899
Q ss_pred cEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCC
Q 018137 108 DIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 108 ~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~ 187 (360)
+++|+||++++.......+.+++.++++|++||++||+||||+|+||||+...+++++|++|++|+++||||+||||||+
T Consensus 112 ~v~I~TK~~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~dyiDl~~lH~pd~~~~~~e~~~al~~l~~~Gkir~iGvSn~~ 191 (367)
T 3lut_A 112 SLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWS 191 (367)
T ss_dssp GCEEEEEESBCCSSGGGBSSCHHHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEEEEEEESCC
T ss_pred eEEEEeccccCCCCccCCCCCHHHHHHHHHHHHHHhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999999653321223357899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhh
Q 018137 188 AQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENY 267 (360)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~ 267 (360)
++++.+++..++..+.++|+++|++||++++...+.+++++|+++||++++|+||++|+|+|++... .|++.+.....+
T Consensus 192 ~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~e~~l~~~~~~~gi~v~a~spL~~G~Ltgk~~~~-~~~~~r~~~~~~ 270 (367)
T 3lut_A 192 SMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGY 270 (367)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEECBTTBCHHHHTHHHHHHHHHCCEEEEECTTGGGGGGTTTTTS-CCTTSGGGSTTC
T ss_pred HHHHHHHHHHHHHcCCCCceeeeccccceecchhHhHHHHHHHHcCCeEEEecccccccccCCcCCC-CCCccccccccc
Confidence 9999999999888888899999999999999765668999999999999999999999999998765 343333221111
Q ss_pred ---hhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHH
Q 018137 268 ---KNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDK 344 (360)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~ 344 (360)
.+.+..+........++.+.++|+++|+|++|+||+|+++++.|.+||+|+++++||+||++++++..+|++++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~ 350 (367)
T 3lut_A 271 QWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHE 350 (367)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTSTTEEEEEECCSSHHHHHHHHTHHHHGGGCCHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHHhhcccCCCCHHHHHH
Confidence 11111122233456678999999999999999999999999999999999999999999999987422799999999
Q ss_pred HHHHHccCCCCCCCCC
Q 018137 345 IEAAVLSKPKRPESYR 360 (360)
Q Consensus 345 l~~~~~~~~~~~~~~~ 360 (360)
|+++.+..+..+..||
T Consensus 351 i~~~~~~~~~~~~~~~ 366 (367)
T 3lut_A 351 IDSILGNKPYSKKDYR 366 (367)
T ss_dssp HHHHHCCCCCC-----
T ss_pred HHHHHhcCCCcccccC
Confidence 9999999999999886
|
| >3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* | Back alignment and structure |
|---|
| >3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A* | Back alignment and structure |
|---|
| >3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0 | Back alignment and structure |
|---|
| >1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A* | Back alignment and structure |
|---|
| >1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A* | Back alignment and structure |
|---|
| >1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A* | Back alignment and structure |
|---|
| >1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A* | Back alignment and structure |
|---|
| >1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A* | Back alignment and structure |
|---|
| >3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar} | Back alignment and structure |
|---|
| >3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A* | Back alignment and structure |
|---|
| >4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A* | Back alignment and structure |
|---|
| >2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A | Back alignment and structure |
|---|
| >1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A* | Back alignment and structure |
|---|
| >1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A* | Back alignment and structure |
|---|
| >3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A* | Back alignment and structure |
|---|
| >1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A* | Back alignment and structure |
|---|
| >1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1 | Back alignment and structure |
|---|
| >1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa} | Back alignment and structure |
|---|
| >1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A* | Back alignment and structure |
|---|
| >4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A | Back alignment and structure |
|---|
| >1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ... | Back alignment and structure |
|---|
| >1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ... | Back alignment and structure |
|---|
| >3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A* | Back alignment and structure |
|---|
| >3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A* | Back alignment and structure |
|---|
| >3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia} | Back alignment and structure |
|---|
| >2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A* | Back alignment and structure |
|---|
| >3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} | Back alignment and structure |
|---|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d3eaua1 | 326 | c.1.7.1 (A:36-361) Voltage-dependent K+ channel be | 4e-78 | |
| d1lqaa_ | 346 | c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: | 2e-69 | |
| d1pyfa_ | 311 | c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillu | 2e-58 | |
| d1gvea_ | 324 | c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) | 7e-50 | |
| d1pz1a_ | 333 | c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillu | 7e-49 | |
| d1ur3m_ | 298 | c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Esc | 3e-43 | |
| d1us0a_ | 314 | c.1.7.1 (A:) Aldose reductase (aldehyde reductase) | 2e-42 | |
| d1s1pa_ | 315 | c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (ak | 1e-40 | |
| d1qwka_ | 312 | c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematod | 3e-39 | |
| d1afsa_ | 319 | c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase | 2e-37 | |
| d1hqta_ | 324 | c.1.7.1 (A:) Aldose reductase (aldehyde reductase) | 4e-37 | |
| d1mi3a_ | 319 | c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenu | 1e-36 | |
| d1frba_ | 315 | c.1.7.1 (A:) FR-1 (fibroblast growth factor-induce | 6e-36 | |
| d1mzra_ | 274 | c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase | 8e-33 | |
| d1vp5a_ | 284 | c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase | 1e-28 | |
| d1hw6a_ | 262 | c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase | 1e-23 |
| >d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 326 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: NAD(P)-linked oxidoreductase family: Aldo-keto reductases (NADP) domain: Voltage-dependent K+ channel beta subunit species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 241 bits (614), Expect = 4e-78
Identities = 160/325 (49%), Positives = 231/325 (71%), Gaps = 5/325 (1%)
Query: 33 MQ-YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRA 91
+Q Y++LG+SGLRVS L G WV+FG Q+ + A+ L+ D+G+N FD AEVYA G+A
Sbjct: 1 LQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKA 60
Query: 92 EEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVI 151
E ++G I++ GW+RS +V++TKIFWGG+ ++GLSRKHI+EG KASL+RL ++YVDV+
Sbjct: 61 EVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVV 120
Query: 152 YCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQP 211
+ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ
Sbjct: 121 FANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQA 180
Query: 212 EYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLA 271
EY+M R KVE + L+ G+G TWSPLA G+++GKY+ G IPP SR +L+ Y+ L
Sbjct: 181 EYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQWLK 239
Query: 272 SRSLVD---DVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENM 328
+ L + K+ L+ IA+ LG L QLAIAWC N VSSV+ GA+ Q+ EN+
Sbjct: 240 DKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENI 299
Query: 329 KAIDVIPLLTPSVMDKIEAAVLSKP 353
AI V+P L+ S++ +I++ + +KP
Sbjct: 300 GAIQVLPKLSSSIVHEIDSILGNKP 324
|
| >d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
| >d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]} Length = 311 | Back information, alignment and structure |
|---|
| >d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]} Length = 333 | Back information, alignment and structure |
|---|
| >d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
| >d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]} Length = 314 | Back information, alignment and structure |
|---|
| >d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
| >d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
| >d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 319 | Back information, alignment and structure |
|---|
| >d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 324 | Back information, alignment and structure |
|---|
| >d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]} Length = 319 | Back information, alignment and structure |
|---|
| >d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 315 | Back information, alignment and structure |
|---|
| >d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
| >d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Thermotoga maritima [TaxId: 2336]} Length = 284 | Back information, alignment and structure |
|---|
| >d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} Length = 262 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1lqaa_ | 346 | Tas protein {Escherichia coli [TaxId: 562]} | 100.0 | |
| d3eaua1 | 326 | Voltage-dependent K+ channel beta subunit {Rat (Ra | 100.0 | |
| d1pyfa_ | 311 | Putative oxidoreductase IolS {Bacillus subtilis [T | 100.0 | |
| d1gvea_ | 324 | Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus | 100.0 | |
| d1pz1a_ | 333 | Putative oxidoreductase YhdN {Bacillus subtilis [T | 100.0 | |
| d1ur3m_ | 298 | Hypothetical oxidoreductase YdhF {Escherichia coli | 100.0 | |
| d1hw6a_ | 262 | 2,5-diketo-D-gluconic acid reductase A {Corynebact | 100.0 | |
| d1afsa_ | 319 | 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus | 100.0 | |
| d1qwka_ | 312 | Hypothetical protein C07D8.6 {Nematode (Caenorhabd | 100.0 | |
| d1mzra_ | 274 | 2,5-diketo-D-gluconic acid reductase A {Escherichi | 100.0 | |
| d1us0a_ | 314 | Aldose reductase (aldehyde reductase) {Human (Homo | 100.0 | |
| d1s1pa_ | 315 | Prostaglandin d2 11-ketoreductase (akr1c3) {Human | 100.0 | |
| d1mi3a_ | 319 | Xylose reductase {Fungi (Candida tenuis) [TaxId: 4 | 100.0 | |
| d1hqta_ | 324 | Aldose reductase (aldehyde reductase) {Pig (Sus sc | 100.0 | |
| d1vp5a_ | 284 | 2,5-diketo-D-gluconic acid reductase A {Thermotoga | 100.0 | |
| d1frba_ | 315 | FR-1 (fibroblast growth factor-induced) protein {M | 100.0 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 86.54 |
| >d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: NAD(P)-linked oxidoreductase family: Aldo-keto reductases (NADP) domain: Tas protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-62 Score=464.02 Aligned_cols=316 Identities=29% Similarity=0.386 Sum_probs=269.6
Q ss_pred CceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCC-------CChHHHHHHHHHHhcCCC
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYA-------NGRAEEIMGQAIRELGWK 105 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~G~sE~~lG~al~~~~~~ 105 (360)
|+||+||+||++||+|||||| .+|+..+++++.++|++|++.|||+||||+.|| .|.+|..+|.+++.....
T Consensus 1 M~yr~lG~tgl~vs~iglGt~-~~g~~~~~~~a~~~l~~A~~~Gin~~DTA~~Yg~~~~~~~~G~~E~~~g~~~~~~~~~ 79 (346)
T d1lqaa_ 1 MQYHRIPHSSLEVSTLGLGTM-TFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSR 79 (346)
T ss_dssp CCEEECTTSSCEEESEEEECT-TBTTTBCHHHHHHHHHHHHHTTCCEEECCTTCSSSCCTTTTTHHHHHHHHHHHHHCCG
T ss_pred CCCeECCCCCCEecCeeEeCc-cCCCCCCHHHHHHHHHHHHHcCCCEEEcccccCCCcccccccchhhhhcchhhhcccc
Confidence 999999999999999999999 677788999999999999999999999999998 589999999999986533
Q ss_pred CCcEEEEeccccCCC----CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-----------------CCHHH
Q 018137 106 RSDIVVSTKIFWGGQ----GPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-----------------TPIEE 164 (360)
Q Consensus 106 R~~v~i~tK~~~~~~----~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-----------------~~~~~ 164 (360)
........+.+.... .....+.+++.|++++++||+|||+||||+|+||||+.. ...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~~d~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1lqaa_ 80 EKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLD 159 (346)
T ss_dssp GGCEEEEEECCSCCTTCCCSSTTCCSSHHHHHHHHHHHHHHHTSSCEEEEEECSCSSCCSCTTCCSCCCCSSCCSSCHHH
T ss_pred ceeeeeecccCCCccccccccccccccHHHHHHHHHHHHHHhCCCeeeeeehhccCcccccccccccccccccccccHHH
Confidence 333333333322211 123356889999999999999999999999999998743 24578
Q ss_pred HHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 165 TVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 165 ~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
+|++|++|+++|+||+||+|||+.+++.++++.+...++..++++|+.||++++.. +.+++++|+++||++++|+||++
T Consensus 160 ~~~~l~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~~~~~q~~yn~~~~~~-e~~~~~~~~~~~i~v~a~~pl~~ 238 (346)
T d1lqaa_ 160 TLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSF-EVGLAEVSQYEGVELLAYSCLGF 238 (346)
T ss_dssp HHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHHHHTCCCCCEEEEECBTTBCTH-HHHHHHHHHHHCCEEEEECTTGG
T ss_pred HHHHHHHHHhCCCeeEEEEeccCHHHHHHHHHHhhhcCCCCeEEEeCCCccccchH-HHHHHHHHHHhCCeEEEeccccc
Confidence 99999999999999999999999999999999988888888999999999999875 77899999999999999999999
Q ss_pred ccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHH
Q 018137 245 GVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQI 324 (360)
Q Consensus 245 G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l 324 (360)
|+|+|++.....|..... .....+.........+.++.+.++|+++|+|++|+||+|++++|.|.+||+|+++++||
T Consensus 239 G~Ltg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~s~aq~al~~~l~~~~v~~vl~G~~~~~~l 315 (346)
T d1lqaa_ 239 GTLTGKYLNGAKPAGARN---TLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQL 315 (346)
T ss_dssp GGGGTTTGGGCCCTTCHH---HHCTTCCTTCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHH
T ss_pred ccccCCccCCCCCccccc---cccchhhhhhHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHCCCCeEEEECCCCHHHH
Confidence 999999977654433211 11222223334667778899999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHccCCCC
Q 018137 325 QENMKAIDVIPLLTPSVMDKIEAAVLSKPKR 355 (360)
Q Consensus 325 ~en~~a~~~~~~L~~~e~~~l~~~~~~~~~~ 355 (360)
++|++++++ +|++++++.|+++.+..+.+
T Consensus 316 ~enl~~~~~--~L~~e~~~~i~~i~~~~~~p 344 (346)
T d1lqaa_ 316 KTNIESLHL--ELSEDVLAEIEAVHQVYTYP 344 (346)
T ss_dssp HHHHGGGGC--CCCHHHHHHHHHHHHHSCSC
T ss_pred HHHHHhcCC--CCCHHHHHHHHhhccccCCC
Confidence 999999998 89999999999998876653
|
| >d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} | Back information, alignment and structure |
|---|
| >d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]} | Back information, alignment and structure |
|---|
| >d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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| >d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|