Citrus Sinensis ID: 018147

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHcccccEEEEccccccccHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHccEEEccccccccccccccccccHHHHHHccccccccEEEEEEcccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccEEEEEccccHHHccccccHHHHHHHHHHHcHHHccccHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHcHEEEccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccHHHHHccccccccccHHHHHHHcccccccEEEEEEEEccccEEccccccc
Coil and Loop (DISEMBL)
mrrfvigrgrnflnrshqqnllssssshcqsrflsstsvidspssssmaptsspaitvdslnpkvlkceyavRGEIVSIAQRLQQElqtnpgshsfdeilycnignpqslgqqpITFFREVLalcdhpsildrsetqglfsaDSIERAWQILDqipgratgayshsqgiKGLRDTIAAGieardgfpadpndifltdgaspAVHMMMQLLIRsendgilcpipqyplysasialhggtlvpyyldeatgwgleTSEVKKQLEAAKAKGITVRALVVinpgnptgqvLAEENQRAIVDFCKKEGLVLLADEvyqenvyvpekkfhsfkkvsrsmgygekdislvsfqsvskgryFHFFSKW
Flexible Loop (DISEMBL)
mrrfvigrgrnflnrshQQNLLSSSSSHCQSRFLSSTsvidspssssmaptsspaitvdslnpKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEArdgfpadpndIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYqenvyvpekkfhsfkkvsrsmgygekdislvsfqsvskgrYFHFFSKW
Low Complexity Region (SEG)
MRRFVIGRGRNFlnrshqqnllssssshcqsrflsstsvidspssssmaptsspaitVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Disordered region (IsUnstruct)
**********************************************************DSLNPKVLKCEYAVRGEIVSIAQRLQQELQ****SHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF***
Disordered Region (DISOPRED)
********G***************************************************LNPKVLKCEYAVRGEIVSIAQRLQ********SHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILD*****GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Disordered Region (DISEMBL)
MRRFVIGRGRNFLNRSHQ***********************************PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Disordered Region (DISPRO)
****VIG***********************************************AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9LDV4	540	Alanine aminotransferase	no	no	0.966	0.644	0.753	1e-159
F4I7I0	543	Alanine aminotransferase	no	no	0.969	0.642	0.730	1e-155
P52894	482	Alanine aminotransferase	N/A	no	0.827	0.618	0.802	1e-142
P34106	482	Alanine aminotransferase	N/A	no	0.827	0.618	0.805	1e-137
Q9LR30	481	Glutamate--glyoxylate ami	no	no	0.802	0.600	0.513	7e-82
Q9S7E9	481	Glutamate--glyoxylate ami	no	no	0.802	0.600	0.5	6e-80
Q54MJ7	534	Probable alanine aminotra	yes	no	0.833	0.561	0.503	7e-80
Q10334	505	Putative alanine aminotra	yes	no	0.811	0.578	0.463	2e-73
P25409	496	Alanine aminotransferase	yes	no	0.855	0.620	0.470	3e-70
Q8QZR5	496	Alanine aminotransferase	yes	no	0.802	0.582	0.486	1e-69

>sp|Q9LDV4|ALAT2_ARATH Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1

 Score =  561 bits (1446), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/365 (75%), Positives = 312/365 (85%), Gaps = 17/365 (4%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
           SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355

Query: 349 SKGRY 353
           SKG Y
Sbjct: 356 SKGYY 360

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|F4I7I0|ALAT1_ARATH Alanine aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=ALAAT1 PE=1 SV=1

 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/367 (73%), Positives = 308/367 (83%), Gaps = 18/367 (4%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPA----- 55
           MRRFVIG+ +N +++S ++ L      H    F+S      +PS SS    SS +     
Sbjct: 1   MRRFVIGQAKNLIDQSRRRQL----HHHKNLSFVSLIPPFSAPSDSSSRHLSSSSSSDMS 56

Query: 56  ---------ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGN 106
                    +T+D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGN
Sbjct: 57  ASDSSSSLPVTLDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGN 116

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
           PQSLGQQPITFFREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHS
Sbjct: 117 PQSLGQQPITFFREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHS 176

Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           QGIKGLRD IA GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYP
Sbjct: 177 QGIKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYP 236

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
           LYSASIALHGGTLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQV
Sbjct: 237 LYSASIALHGGTLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQV 296

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
           L+EENQR +V FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQ
Sbjct: 297 LSEENQRDVVKFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQ 356

Query: 347 SVSKGRY 353
           SVSKG Y
Sbjct: 357 SVSKGYY 363

Major alanine aminotransferase in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P52894|ALA2_HORVU Alanine aminotransferase 2 OS=Hordeum vulgare PE=1 SV=1

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/298 (80%), Positives = 265/298 (88%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           + VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYCNIGNPQSLGQQP+
Sbjct: 5   VAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPV 64

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGAYSHSQGIKGLRD 
Sbjct: 65  TFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDA 124

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALH
Sbjct: 125 IASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH 184

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ  I
Sbjct: 185 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDI 244

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           V FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ LVS+QSVSKG Y
Sbjct: 245 VKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYY 302

Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/298 (80%), Positives = 267/298 (89%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           + V++LNPKVLKCEYAVRGEIV  AQ LQQ+LQT PGS  FDEILYCNIGNPQSLGQQP+
Sbjct: 5   VAVENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPV 64

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP +L++ ET+ LFSAD+I RA QIL  IPGRATGAYSHSQGIKGLRD 
Sbjct: 65  TFFREVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDA 124

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGI +RDGFPA+ +DIF+TDGASP VHMMMQLLIR+E DGILCPIPQYPLYSASIALH
Sbjct: 125 IAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALH 184

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDE TGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQ  I
Sbjct: 185 GGTLVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDI 244

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           V FCK EGLVLLADEVYQEN+YV +KKF+SFKK++RS+GYGE D+ LVSFQSVSKG Y
Sbjct: 245 VRFCKNEGLVLLADEVYQENIYVDDKKFNSFKKIARSVGYGEDDLPLVSFQSVSKGYY 302

Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway.

Panicum miliaceum (taxid: 4540)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9LR30|GGT1_ARATH Glutamate--glyoxylate aminotransferase 1 OS=Arabidopsis thaliana GN=GGAT1 PE=1 SV=1

 Score =  304 bits (778), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 154/300 (51%), Positives = 205/300 (68%), Gaps = 11/300 (3%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           A+  D+LN  V KC+YAVRGE+   A  LQ+E +         +I++ N+GNP +LGQ+P
Sbjct: 5   ALDYDTLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           +TF R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G+R 
Sbjct: 56  LTFPRQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +A  I+ RDG+P+DP  IFLTDGAS  V  ++  +IR   DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISL 174

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
            GGTLVPYYLDE+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R 
Sbjct: 175 LGGTLVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGRY 353
           I+ FC  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSKG +
Sbjct: 235 ILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYW 294

Catalyzes the glutamate:glyoxylate (GGT or GGAT), alanine:glyoxylate (AGT), alanine:2-oxoglutarate (AKT) and glutamate:pyruvate (GPT) aminotransferase reactions in peroxisomes. Required for abscisic acid (ABA)- and stress-mediated responses in an H(2)O(2)-dependent manner. Function as a photorespiratory aminotransferase that modulates amino acid content during photorespiration (GGAT activity); promotes serine, glycine and citrulline metabolism in response to light.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S7E9|GGT2_ARATH Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1

 Score =  297 bits (761), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 150/300 (50%), Positives = 205/300 (68%), Gaps = 11/300 (3%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           A+  +SLN  V  C+YAVRGE+   A  LQ+E +         +I++ N+GNP +LGQ+P
Sbjct: 5   ALDYESLNENVKNCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           +TF R+V++LC  P +LD      +F AD+I RA   L    G   GAYS S+G+ G+R 
Sbjct: 56  LTFPRQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +A  IE RDG+P+DP  IFLTDGAS  V  ++  +IR + DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISL 174

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
            GGTLVPYYL+E+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R 
Sbjct: 175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGRY 353
           I+ FC  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ L+SF +VSKG +
Sbjct: 235 ILRFCCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYW 294

Catalyzes the Glu:glyoxylate aminotransferase (GGT), Ala:glyoxylate aminotransferase (AGT), Ala:2-oxoglutarate aminotransferase (AKT) and Glu:pyruvate aminotransferase (GPT) reactions in peroxisomes.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q54MJ7|ALAM_DICDI Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1

 Score =  297 bits (761), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/306 (50%), Positives = 209/306 (68%), Gaps = 6/306 (1%)

Query: 51  TSSPAITVDSLNPKVLKCEYAVRGEIV----SIAQRLQQELQTNPGSHSFDEILYCNIGN 106
           T   ++T+D++   V   +YAVRGE+V    +I+ +LQ++      +  F+EI+YCNIGN
Sbjct: 49  THKKSMTIDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGN 108

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
           PQ L Q+P+T+FR+V++L + P +LD    + ++ AD I RA +IL  I    TGAYS+S
Sbjct: 109 PQQLKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNS 167

Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           QGI  +  ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYP
Sbjct: 168 QGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYP 227

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
           LYSA+I L+ G+ + Y L+E  GW LE S+++     A +KGI  RALV+INPGNPTGQ 
Sbjct: 228 LYSATIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQC 287

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSF 345
           L   N   IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG    D+ +VSF
Sbjct: 288 LDRANMEEIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSF 347

Query: 346 QSVSKG 351
            SVSKG
Sbjct: 348 HSVSKG 353

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q10334|ALAT_SCHPO Putative alanine aminotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC582.08 PE=3 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/304 (46%), Positives = 195/304 (64%), Gaps = 12/304 (3%)

Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           ++SLN +V K  YAVRG +  +A  +Q +L  NP S+ F EI+Y NIGNPQ +GQ PITF
Sbjct: 30  LNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITF 89

Query: 118 FREVLALCDHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
            R+VL+LC +P++LD +E    Q LF  D ++R+  +L +    + GAYS SQGI  +R 
Sbjct: 90  VRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRR 147

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +A  I ARDGF  +P+DI+LT GAS A  ++M L+I    DG++ P PQYPLY A I L
Sbjct: 148 HVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDL 207

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
             G++V Y L E   W ++  + KK  + A  KGI VR  VVINPGNPTG  ++E +   
Sbjct: 208 MSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEK 267

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD-----ISLVSFQSVS 349
           ++ F K +G+VLLADEVYQ N+Y  + KFHSF++    +   E D     +SL+S  SVS
Sbjct: 268 VLRFAKAKGIVLLADEVYQNNIY--QNKFHSFRRKLGELREKEPDNHWDQVSLISVNSVS 325

Query: 350 KGRY 353
           KG++
Sbjct: 326 KGQF 329

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P25409|ALAT1_RAT Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/321 (47%), Positives = 201/321 (62%), Gaps = 13/321 (4%)

Query: 37  TSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSF 96
            S ++  S +S        +T+D++NP V + EYAVRG IV  A  L+QEL+       F
Sbjct: 2   ASRVNDQSQASRNGLKGKVLTLDTMNPCVRRVEYAVRGPIVQRALELEQELRQG-VKKPF 60

Query: 97  DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP 156
            E++  NIG+ Q++GQ+PITFFR+VLALC +P++L   +    F  D+  RA +IL    
Sbjct: 61  TEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACG 116

Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSE- 214
           G + GAYS S GI+ +R+ +A  IE RDG  PADPN+IFL+ GAS A+  M++LL+  E 
Sbjct: 117 GHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEG 176

Query: 215 --NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR 272
               G+L PIPQYPLYSA++A      V YYLDE   W L+ +E+++ L  A+ +    R
Sbjct: 177 RARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPR 235

Query: 273 ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
            L VINPGNPTGQV   E   A++ F  KEGL L+ADEVYQ+NVY    +FHSFKKV   
Sbjct: 236 VLCVINPGNPTGQVQTRECIEAVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLME 295

Query: 333 MG--YGEKDISLVSFQSVSKG 351
           MG  Y  +   L SF SVSKG
Sbjct: 296 MGPPYSTQQ-ELASFHSVSKG 315

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8QZR5|ALAT1_MOUSE Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/302 (48%), Positives = 195/302 (64%), Gaps = 13/302 (4%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +T+D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PI
Sbjct: 21  LTLDTMNPCVRRVEYAVRGPIVQRALELEQELRQG-VKKPFTEVIRANIGDAQAMGQRPI 79

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ 
Sbjct: 80  TFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIRED 135

Query: 176 IAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSAS 231
           +A  IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA+
Sbjct: 136 VAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAA 195

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
           +A      V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E 
Sbjct: 196 LAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTREC 254

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVS 349
             A++ F  +EGL L+ADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVS
Sbjct: 255 IEAVIRFAFEEGLFLMADEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQ-ELASFHSVS 313

Query: 350 KG 351
           KG
Sbjct: 314 KG 315

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
359482440	526	PREDICTED: alanine aminotransferase 2 [V	0.952	0.652	0.792	1e-160
224074105	481	predicted protein [Populus trichocarpa]	0.833	0.623	0.9	1e-160
356520168	541	PREDICTED: alanine aminotransferase 2-li	0.961	0.639	0.752	1e-158
297839097	535	ALAAT2 [Arabidopsis lyrata subsp. lyrata	0.980	0.659	0.771	1e-158
37953301	481	alanine aminotransferase [Capsicum annuu	0.830	0.621	0.882	1e-158
297742929	482	unnamed protein product [Vitis vinifera]	0.827	0.618	0.882	1e-158
145327219	431	alanine aminotransferase 2 [Arabidopsis	0.966	0.807	0.753	1e-157
30698866	540	alanine aminotransferase 2 [Arabidopsis	0.966	0.644	0.753	1e-157
449453397	528	PREDICTED: alanine aminotransferase 2, m	0.827	0.564	0.872	1e-157
224119694	481	predicted protein [Populus trichocarpa]	0.827	0.619	0.885	1e-156

>gi|359482440|ref|XP_002265294.2| PREDICTED: alanine aminotransferase 2 [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/356 (79%), Positives = 312/356 (87%), Gaps = 13/356 (3%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSM---APTSSPAIT 57
           MRRFV G   ++  RS          SH   RF SST+ + +  S S    A   +P +T
Sbjct: 1   MRRFVSGVLSSYQKRSL---------SHRSLRFFSSTTSLSNSDSPSSSSSAAMPTP-VT 50

Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           ++++NPKVL+CEYAVRGEIV++AQRLQQELQ  PGS  FDEILYCNIGNPQSLGQQPITF
Sbjct: 51  LETINPKVLECEYAVRGEIVTLAQRLQQELQEKPGSLPFDEILYCNIGNPQSLGQQPITF 110

Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
           FREV+ALCDHP ILD+SETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRDTIA
Sbjct: 111 FREVIALCDHPPILDKSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 170

Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
           AGIEARDGFP++PNDIFLTDGASPAVHMMMQLLIR+E DGILCPIPQYPLYSASI LHGG
Sbjct: 171 AGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPIPQYPLYSASIVLHGG 230

Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
           TLVPYYLDEATGWGLE SE++KQLE AK+KGITVRALVVINPGNPTGQVL+E+NQR IV+
Sbjct: 231 TLVPYYLDEATGWGLEISELQKQLEDAKSKGITVRALVVINPGNPTGQVLSEDNQRDIVE 290

Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           FCKKEGLVLLADEVYQENVYVP+KKFHSFKK+SRSMGYGE+DIS+VSFQSVSKG Y
Sbjct: 291 FCKKEGLVLLADEVYQENVYVPDKKFHSFKKISRSMGYGEEDISVVSFQSVSKGYY 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074105|ref|XP_002304255.1| predicted protein [Populus trichocarpa] gi|222841687|gb|EEE79234.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/300 (90%), Positives = 287/300 (95%)

Query: 54  PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
           P +++D++NPKVLKCEYAVRGEIV++AQ LQ+EL++ PGSH FDEILYCNIGNPQSLGQQ
Sbjct: 2   PPVSLDNINPKVLKCEYAVRGEIVTLAQALQEELKSKPGSHPFDEILYCNIGNPQSLGQQ 61

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           PITFFREVLALCDHPSILDRSETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLR
Sbjct: 62  PITFFREVLALCDHPSILDRSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLR 121

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
           DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIA
Sbjct: 122 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA 181

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
           LHGG LVPYYLDEATGWGLE SE+KKQL  AK+KGIT RALVVINPGNPTGQVLAE+NQR
Sbjct: 182 LHGGALVPYYLDEATGWGLEVSELKKQLADAKSKGITPRALVVINPGNPTGQVLAEDNQR 241

Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
            IV+FCK+EGLVLLADEVYQENVYVPEKKF SFKKV+RSMGYGEKDISLVSFQSVSKG Y
Sbjct: 242 GIVEFCKQEGLVLLADEVYQENVYVPEKKFDSFKKVARSMGYGEKDISLVSFQSVSKGYY 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520168|ref|XP_003528736.1| PREDICTED: alanine aminotransferase 2-like isoform 1 [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/368 (75%), Positives = 305/368 (82%), Gaps = 22/368 (5%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHC---------------QSRFLSSTSVIDSPSS 45
           MR++   R R+  NRS          +H                +SRFLSST        
Sbjct: 1   MRKYAADRFRHLFNRSLLLLRHRHHHNHHPFPYSSSVSSLSPFSRSRFLSSTPF------ 54

Query: 46  SSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIG 105
            SMA  S   +T  ++NPKVLKCEYAVRGE+V++AQ LQ++LQ NPGSH FDEILYCNIG
Sbjct: 55  -SMASDSPFPVTAQNINPKVLKCEYAVRGEVVTLAQNLQKDLQANPGSHPFDEILYCNIG 113

Query: 106 NPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH 165
           NPQSLGQQPITFFREVLALCDHP+ILD+SETQGLFS D+I+RAWQI+DQIPGRATGAYSH
Sbjct: 114 NPQSLGQQPITFFREVLALCDHPAILDKSETQGLFSTDAIQRAWQIVDQIPGRATGAYSH 173

Query: 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY 225
           SQG+KGLRDTIAAGIE RDGFPA+P+DIF+TDGASPAVH MMQLLIRSENDGILCPIPQY
Sbjct: 174 SQGVKGLRDTIAAGIEERDGFPANPDDIFMTDGASPAVHNMMQLLIRSENDGILCPIPQY 233

Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285
           PLYSASIALHGG LVPYYLDEATGWGLE  E+KKQLEAAK+KGI VRALVVINPGNPTGQ
Sbjct: 234 PLYSASIALHGGCLVPYYLDEATGWGLEIPELKKQLEAAKSKGINVRALVVINPGNPTGQ 293

Query: 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345
           VL E NQR IV+FCK+EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE DI+LVSF
Sbjct: 294 VLGEANQRDIVEFCKQEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGENDITLVSF 353

Query: 346 QSVSKGRY 353
           QSVSKG +
Sbjct: 354 QSVSKGYH 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839097|ref|XP_002887430.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata] gi|297333271|gb|EFH63689.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/355 (77%), Positives = 311/355 (87%), Gaps = 2/355 (0%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSS--SSMAPTSSPAITV 58
           MRRF+I + +  ++ S +Q+  S S    QSR L+S S   S +S  S+   TSS  +T+
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHKSPSFLSPQSRPLASLSRFFSSTSEMSASDSTSSLPVTL 60

Query: 59  DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
           DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+ N  ++ FDEI+YCNIGNPQSLGQ PI FF
Sbjct: 61  DSINPKVLKCEYAVRGEIVNIAQKLQEDLKANKDAYPFDEIIYCNIGNPQSLGQLPIRFF 120

Query: 119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
           REVLALCDH S+LD SET GLFS DSI+RAW+ILDQIPGRATGAYSHSQGIKGLRD IAA
Sbjct: 121 REVLALCDHASLLDESETHGLFSTDSIDRAWKILDQIPGRATGAYSHSQGIKGLRDVIAA 180

Query: 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
           GIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ S+ DGILCPIPQYPLYSASIALHGG+
Sbjct: 181 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSKKDGILCPIPQYPLYSASIALHGGS 240

Query: 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
           LVPYYLDEATGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQR IV+F
Sbjct: 241 LVPYYLDEATGWGLEISDLKKQLEEARSKGIAVRALVVINPGNPTGQVLAEDNQRDIVNF 300

Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           CK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSVSKG Y
Sbjct: 301 CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSVSKGYY 355

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37953301|gb|AAR05449.1| alanine aminotransferase [Capsicum annuum]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/299 (88%), Positives = 285/299 (95%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           +IT+D++NPKVLKCEYAVRGEIV+IAQ+LQQ+L+ NPGSH FDEILYCNIGNPQSL QQP
Sbjct: 3   SITIDTINPKVLKCEYAVRGEIVTIAQKLQQDLKDNPGSHPFDEILYCNIGNPQSLAQQP 62

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           ITFFREVLALCDHPSILD+SETQGLFSAD+IERA+QILDQIPGRATGAYSHSQGIKGLRD
Sbjct: 63  ITFFREVLALCDHPSILDKSETQGLFSADAIERAFQILDQIPGRATGAYSHSQGIKGLRD 122

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
           TIA+GIEARDGFPADPND+FLTDGASPAVHMMMQLLIRS+NDGILCPIPQYPLYSASIAL
Sbjct: 123 TIASGIEARDGFPADPNDLFLTDGASPAVHMMMQLLIRSQNDGILCPIPQYPLYSASIAL 182

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
           HGGTLVPYYLDE TGWGLE SE++ QL  AK+ GI VRALVVINPGNPTGQVL E NQR 
Sbjct: 183 HGGTLVPYYLDEQTGWGLEISELEHQLNTAKSNGIDVRALVVINPGNPTGQVLGEANQRE 242

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           IV+FCKKEGLVLLADEVYQENVYVP+KKFHSFKK++RSMGYGEKDISLVSFQSVSKG Y
Sbjct: 243 IVEFCKKEGLVLLADEVYQENVYVPDKKFHSFKKITRSMGYGEKDISLVSFQSVSKGFY 301

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742929|emb|CBI35796.3| unnamed protein product [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/298 (88%), Positives = 287/298 (96%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +T++++NPKVL+CEYAVRGEIV++AQRLQQELQ  PGS  FDEILYCNIGNPQSLGQQPI
Sbjct: 5   VTLETINPKVLECEYAVRGEIVTLAQRLQQELQEKPGSLPFDEILYCNIGNPQSLGQQPI 64

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREV+ALCDHP ILD+SETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRDT
Sbjct: 65  TFFREVIALCDHPPILDKSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDT 124

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGIEARDGFP++PNDIFLTDGASPAVHMMMQLLIR+E DGILCPIPQYPLYSASI LH
Sbjct: 125 IAAGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPIPQYPLYSASIVLH 184

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDEATGWGLE SE++KQLE AK+KGITVRALVVINPGNPTGQVL+E+NQR I
Sbjct: 185 GGTLVPYYLDEATGWGLEISELQKQLEDAKSKGITVRALVVINPGNPTGQVLSEDNQRDI 244

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           V+FCKKEGLVLLADEVYQENVYVP+KKFHSFKK+SRSMGYGE+DIS+VSFQSVSKG Y
Sbjct: 245 VEFCKKEGLVLLADEVYQENVYVPDKKFHSFKKISRSMGYGEEDISVVSFQSVSKGYY 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145327219|ref|NP_001077811.1| alanine aminotransferase 2 [Arabidopsis thaliana] gi|332197185|gb|AEE35306.1| alanine aminotransferase 2 [Arabidopsis thaliana]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/365 (75%), Positives = 312/365 (85%), Gaps = 17/365 (4%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
           SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355

Query: 349 SKGRY 353
           SKG Y
Sbjct: 356 SKGYY 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698866|ref|NP_565040.2| alanine aminotransferase 2 [Arabidopsis thaliana] gi|75173856|sp|Q9LDV4.1|ALAT2_ARATH RecName: Full=Alanine aminotransferase 2, mitochondrial; Short=AtAlaAT2; Short=AtAlaATm; AltName: Full=Alanine-2-oxoglutarate aminotransferase 3; Flags: Precursor gi|9082268|gb|AAF82781.1|AF275371_1 alanine aminotransferase [Arabidopsis thaliana] gi|12325273|gb|AAG52580.1|AC016529_11 putative alanine aminotransferase; 79592-76658 [Arabidopsis thaliana] gi|332197184|gb|AEE35305.1| alanine aminotransferase 2 [Arabidopsis thaliana]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/365 (75%), Positives = 312/365 (85%), Gaps = 17/365 (4%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
           SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355

Query: 349 SKGRY 353
           SKG Y
Sbjct: 356 SKGYY 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453397|ref|XP_004144444.1| PREDICTED: alanine aminotransferase 2, mitochondrial-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/298 (87%), Positives = 283/298 (94%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +++ ++N KVLKCEYAVRGEIV++AQ+LQ+EL   PGSH FDEILYCNIGNPQSLGQQPI
Sbjct: 51  LSIATINDKVLKCEYAVRGEIVTLAQKLQEELSVKPGSHPFDEILYCNIGNPQSLGQQPI 110

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP+ILD+SETQGLFS D+I RAWQILDQIPGRATGAYSHSQGIKGLRDT
Sbjct: 111 TFFREVLALCDHPAILDKSETQGLFSTDAIARAWQILDQIPGRATGAYSHSQGIKGLRDT 170

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGIEARDG+PADPND FLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALH
Sbjct: 171 IAAGIEARDGYPADPNDFFLTDGASPAVHMMMQLLIRSEGDGILCPIPQYPLYSASIALH 230

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDEATGWGLETSE+KKQLEAAK+KGI VRALVVINPGNPTGQVLAE+NQR I
Sbjct: 231 GGTLVPYYLDEATGWGLETSELKKQLEAAKSKGINVRALVVINPGNPTGQVLAEDNQRQI 290

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           V+FCK+EGLVLLADEVYQEN+Y P+KKFHSFKK+SRSMGYG +DI+LVSFQSVSKG Y
Sbjct: 291 VEFCKQEGLVLLADEVYQENIYAPDKKFHSFKKISRSMGYGNEDIALVSFQSVSKGYY 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119694|ref|XP_002331223.1| predicted protein [Populus trichocarpa] gi|222873344|gb|EEF10475.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/298 (88%), Positives = 283/298 (94%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +++D++NPKVLKCEYAVRGEIV++AQ +Q+EL++ PGS  FDEILYCNIGNPQSLGQQPI
Sbjct: 4   VSLDTINPKVLKCEYAVRGEIVTLAQAVQEELKSKPGSRPFDEILYCNIGNPQSLGQQPI 63

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHPSILD+SET+GLFSAD+IERA QILDQIPGRATGAYSHSQGIKGLRD 
Sbjct: 64  TFFREVLALCDHPSILDKSETRGLFSADAIERARQILDQIPGRATGAYSHSQGIKGLRDA 123

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALH
Sbjct: 124 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH 183

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDEATGWGLE SE+KKQ   AK+KGIT RALVVINPGNPTGQVLAE NQ+ I
Sbjct: 184 GGTLVPYYLDEATGWGLEVSELKKQWADAKSKGITPRALVVINPGNPTGQVLAENNQKEI 243

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV+RSMGYGEKDIS+VSFQSVSKG Y
Sbjct: 244 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVARSMGYGEKDISVVSFQSVSKGYY 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2195808	543	AlaAT1 "alanine aminotransfera	0.822	0.545	0.837	6.5e-138
TAIR|locus:2028000	481	GGT1 "glutamate:glyoxylate ami	0.786	0.588	0.523	2.5e-74
TAIR|locus:2026841	481	AOAT2 "alanine-2-oxoglutarate	0.786	0.588	0.510	7.5e-73
DICTYBASE|DDB_G0285899	534	DDB_G0285899 "glutamate pyruva	0.813	0.548	0.511	9.6e-73
POMBASE|SPBC582.08	505	SPBC582.08 "alanine aminotrans	0.811	0.578	0.463	4.9e-69
SGD|S000002518	507	ALT2 "Catalytically inactive p	0.802	0.570	0.473	3.2e-65
UNIPROTKB|F1RSP5	496	GPT "Alanine aminotransferase	0.797	0.578	0.493	4.1e-65
RGD|621720	496	Gpt "glutamic-pyruvate transam	0.797	0.578	0.49	8.5e-65
MGI|MGI:95802	496	Gpt "glutamic pyruvic transami	0.797	0.578	0.486	2.3e-64
ASPGD|ASPL0000049393	555	AN1923 [Emericella nidulans (t	0.805	0.522	0.451	7.6e-64

TAIR|locus:2195808 AlaAT1 "alanine aminotransferas" [Arabidopsis thaliana (taxid:3702)]

 Score = 1327 (472.2 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
 Identities = 248/296 (83%), Positives = 277/296 (93%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQSLGQQPITF
Sbjct:    68 LDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQQPITF 127

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHSQGIKGLRD IA
Sbjct:   128 FREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHSQGIKGLRDAIA 187

Query:   178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
              GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYPLYSASIALHGG
Sbjct:   188 DGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASIALHGG 247

Query:   238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
             TLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQVL+EENQR +V 
Sbjct:   248 TLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQVLSEENQRDVVK 307

Query:   298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
             FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQSVSKG Y
Sbjct:   308 FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQSVSKGYY 363

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005524 "ATP binding" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2028000 GGT1 "glutamate:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 154/294 (52%), Positives = 202/294 (68%)

Query:    59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
             D+LN  V KC+YAVRGE+   A  LQ+E     G     +I++ N+GNP +LGQ+P+TF 
Sbjct:     9 DTLNENVKKCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59

Query:   119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
             R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G+R  +A 
Sbjct:    60 RQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118

Query:   179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
              I+ RDG+P+DP  IFLTDGAS  V  ++  +IR   DGIL P+PQYPLYSA+I+L GGT
Sbjct:   119 FIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISLLGGT 178

Query:   239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
             LVPYYLDE+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct:   179 LVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKF 238

Query:   299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKG 351
             C  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSKG
Sbjct:   239 CYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKG 292

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009853 "photorespiration" evidence=RCA;IMP;TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IMP;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA

GO:0047958 "glycine:2-oxoglutarate aminotransferase activity" evidence=IMP;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR|locus:2026841 AOAT2 "alanine-2-oxoglutarate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 150/294 (51%), Positives = 202/294 (68%)

Query:    59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
             +SLN  V  C+YAVRGE+   A  LQ+E     G     +I++ N+GNP +LGQ+P+TF 
Sbjct:     9 ESLNENVKNCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59

Query:   119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
             R+V++LC  P +LD      +F AD+I RA   L    G   GAYS S+G+ G+R  +A 
Sbjct:    60 RQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118

Query:   179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
              IE RDG+P+DP  IFLTDGAS  V  ++  +IR + DGIL P+PQYPLYSA+I+L GGT
Sbjct:   119 FIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGT 178

Query:   239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
             LVPYYL+E+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct:   179 LVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRF 238

Query:   299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKG 351
             C  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ L+SF +VSKG
Sbjct:   239 CCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKG 292

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009853 "photorespiration" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA

GO:0047958 "glycine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0285899 DDB_G0285899 "glutamate pyruvate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 153/299 (51%), Positives = 205/299 (68%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNP--GSHS--FDEILYCNIGNPQSLGQQ 113
             +D++   V   +YAVRGE+V  A+ +  +LQ     G+ +  F+EI+YCNIGNPQ L Q+
Sbjct:    56 IDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQK 115

Query:   114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
             P+T+FR+V++L + P +LD    + ++ AD I RA +IL  I    TGAYS+SQGI  + 
Sbjct:   116 PLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNSQGIGLVL 174

Query:   174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
              ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYPLYSA+I 
Sbjct:   175 RSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATIE 234

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
             L+ G+ + Y L+E  GW LE S+++     A +KGI  RALV+INPGNPTGQ L   N  
Sbjct:   235 LYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANME 294

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSFQSVSKG 351
              IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG    D+ +VSF SVSKG
Sbjct:   295 EIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSFHSVSKG 353

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0042853 "L-alanine catabolic process" evidence=IEA

POMBASE|SPBC582.08 SPBC582.08 "alanine aminotransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 141/304 (46%), Positives = 195/304 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             ++SLN +V K  YAVRG +  +A  +Q +L  NP S+ F EI+Y NIGNPQ +GQ PITF
Sbjct:    30 LNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITF 89

Query:   118 FREVLALCDHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
              R+VL+LC +P++LD +E    Q LF  D ++R+  +L +    + GAYS SQGI  +R 
Sbjct:    90 VRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRR 147

Query:   175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
              +A  I ARDGF  +P+DI+LT GAS A  ++M L+I    DG++ P PQYPLY A I L
Sbjct:   148 HVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDL 207

Query:   235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
               G++V Y L E   W ++  + KK  + A  KGI VR  VVINPGNPTG  ++E +   
Sbjct:   208 MSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEK 267

Query:   295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD-----ISLVSFQSVS 349
             ++ F K +G+VLLADEVYQ N+Y  + KFHSF++    +   E D     +SL+S  SVS
Sbjct:   268 VLRFAKAKGIVLLADEVYQNNIY--QNKFHSFRRKLGELREKEPDNHWDQVSLISVNSVS 325

Query:   350 KGRY 353
             KG++
Sbjct:   326 KGQF 329

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042851 "L-alanine metabolic process" evidence=ISS

SGD|S000002518 ALT2 "Catalytically inactive paralog of ALT1, an alanine transaminase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 142/300 (47%), Positives = 193/300 (64%)

Query:    61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFRE 120
             LN  V K EYAVRG I + A  L++EL+ NP    FD+I+  NIGNPQ L Q+P+TF R+
Sbjct:    31 LNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPLTFTRQ 90

Query:   121 VLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176
             VLA+ ++P IL     +     LFS D++ERA ++L+ I G + GAYSHSQG+ G+R T+
Sbjct:    91 VLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDIGG-SIGAYSHSQGVPGIRQTV 149

Query:   177 AAGIEARDGF-PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
             A  I  RDG  PA P DI+LT GAS A   ++ LL +    G+L PIPQYPLY+AS +L 
Sbjct:   150 ADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTASASLF 209

Query:   236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
                ++PYYLDE + W   + E++K ++ A  K I    L+VINPGNPTG VL+EE    I
Sbjct:   210 NAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARI 269

Query:   296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSVSKG 351
                  K G+ +++DEVYQEN++  + KFHS KKV R + +   G+ D + L S  S+SKG
Sbjct:   270 CLIAAKYGITIISDEVYQENIF-NDVKFHSMKKVLRKLQHLYPGKFDNVQLASLHSISKG 328

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA;IGI

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042853 "L-alanine catabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1RSP5 GPT "Alanine aminotransferase 1" [Sus scrofa (taxid:9823)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 148/300 (49%), Positives = 193/300 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +DS+NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF
Sbjct:    23 LDSMNPCVQRVEYAVRGPIVLRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQKPITF 81

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
              R+VLALC HP +L+ ++    F  D+  RA +IL    G + GAYS S GI+ +R+ +A
Sbjct:    82 LRQVLALCIHPDLLNSAD----FPEDAKRRAQRILQACGGHSLGAYSISPGIQMIREDVA 137

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  PADPN+IFL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   138 RYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVFGEGRTRTGVLIPIPQYPLYSAALA 197

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                   V YYLDE   W L+ +E+++ L  A+      RAL VINPGNPTGQV   E   
Sbjct:   198 ELNAVQVDYYLDEERAWALDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIE 256

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
             A++ F  +EGL LLADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVSKG
Sbjct:   257 AVIRFAYEEGLFLLADEVYQDNVYAEGSQFHSFKKVLTEMGPPYAARQ-ELASFHSVSKG 315

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

RGD|621720 Gpt "glutamic-pyruvate transaminase (alanine aminotransferase)" [Rattus norvegicus (taxid:10116)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 147/300 (49%), Positives = 193/300 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF
Sbjct:    23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITF 81

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ +A
Sbjct:    82 FRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVA 137

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   138 QYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALA 197

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                   V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E   
Sbjct:   198 ELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIE 256

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
             A++ F  KEGL L+ADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVSKG
Sbjct:   257 AVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQ-ELASFHSVSKG 315

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISO;NAS

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=NAS

GO:0042853 "L-alanine catabolic process" evidence=IEA

MGI|MGI:95802 Gpt "glutamic pyruvic transaminase, soluble" [Mus musculus (taxid:10090)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 146/300 (48%), Positives = 193/300 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF
Sbjct:    23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITF 81

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ +A
Sbjct:    82 FRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVA 137

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   138 QYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALA 197

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                   V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E   
Sbjct:   198 ELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIE 256

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
             A++ F  +EGL L+ADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVSKG
Sbjct:   257 AVIRFAFEEGLFLMADEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQ-ELASFHSVSKG 315

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ASPGD|ASPL0000049393 AN1923 [Emericella nidulans (taxid:162425)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 136/301 (45%), Positives = 195/301 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++N  V   +YAVRGE+   A+  +  L     +  FD +++ NIGNPQ L Q+PITF
Sbjct:    81 LDNINSNVKAAKYAVRGELAVKAEEYRVRLAQGDKTLPFDSVIFANIGNPQQLDQKPITF 140

Query:   118 FREVLALCDHPSIL---DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
             FR+VL+L ++P +L   D   T   +  D IERA ++L ++  ++ GAYSHSQG   +R+
Sbjct:   141 FRQVLSLMENPLLLSNKDALRTSFGYQDDVIERAEKLLAEV--QSVGAYSHSQGAPLIRE 198

Query:   175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
             ++A  IE RDGFPADP  ++LT GAS  V+ ++ ++    N G+L PIPQYPLY+A+++L
Sbjct:   199 SVAKFIEERDGFPADPQSLYLTGGASSGVNTILNVICNGPNAGVLVPIPQYPLYTATLSL 258

Query:   235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
                  VPY+L+E   WG +   +KK LE AKA G  VRA+VVINPGNPTG  L+  + ++
Sbjct:   259 LNAQCVPYHLEEQKAWGTDIGTIKKSLEQAKAAGTDVRAIVVINPGNPTGASLSPADIKS 318

Query:   295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSVSK 350
             ++D   +E LV++ADEVYQ NV++ E  F SFKK  R +     G+ D + LVS  S SK
Sbjct:   319 VLDIAAEEKLVVIADEVYQTNVFIGE--FTSFKKRLRELQQEVPGKYDNVELVSLHSTSK 376

Query:   351 G 351
             G
Sbjct:   377 G 377

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA;RCA

GO:0006531 "aspartate metabolic process" evidence=RCA

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006523 "alanine biosynthetic process" evidence=IEA

GO:0006524 "alanine catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52894	ALA2_HORVU	2, ., 6, ., 1, ., 2	0.8020	0.8277	0.6182	N/A	no
P34106	ALA2_PANMI	2, ., 6, ., 1, ., 2	0.8053	0.8277	0.6182	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.921
4th Layer	2.6.1.2	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1492__AT1G72330.1 annotation not avaliable (535 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
PLN02231	534	PLN02231, PLN02231, alanine transaminase	0.0
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	1e-156
PLN02368	407	PLN02368, PLN02368, alanine transaminase	1e-117
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	4e-41
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	5e-40
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	1e-34
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	8e-28
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	9e-27
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	2e-26
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	2e-23
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	1e-22
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	5e-20
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	3e-19
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	2e-18
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	3e-18
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	5e-18
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	1e-16
PLN02607	447	PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl	3e-16
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	5e-15
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	7e-15
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	1e-14
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	2e-14
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	3e-14
PRK09148	405	PRK09148, PRK09148, aminotransferase; Validated	5e-14
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	7e-14
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	8e-14
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	1e-13
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	3e-13
TIGR03539	357	TIGR03539, DapC_actino, succinyldiaminopimelate tr	9e-13
PRK07865	364	PRK07865, PRK07865, N-succinyldiaminopimelate amin	3e-12
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	5e-12
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	2e-11
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	3e-11
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	4e-11
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	4e-11
PRK07550	386	PRK07550, PRK07550, hypothetical protein; Provisio	5e-11
PLN02450	468	PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl	7e-11
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	7e-11
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	1e-10
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	2e-10
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	2e-10
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	2e-10
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	4e-10
TIGR03537	350	TIGR03537, DapC, succinyldiaminopimelate transamin	5e-10
PRK09147	396	PRK09147, PRK09147, succinyldiaminopimelate transa	5e-10
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	5e-10
PRK08960	387	PRK08960, PRK08960, hypothetical protein; Provisio	6e-10
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	1e-09
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	3e-09
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	3e-09
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	1e-08
PLN02376	496	PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl	2e-08
PRK14807	351	PRK14807, PRK14807, histidinol-phosphate aminotran	4e-08
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	5e-08
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	7e-08
PRK06225	380	PRK06225, PRK06225, aspartate aminotransferase; Pr	1e-07
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	2e-07
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	9e-07
PRK05942	394	PRK05942, PRK05942, aspartate aminotransferase; Pr	2e-06
PRK09440	416	PRK09440, avtA, valine--pyruvate transaminase; Pro	2e-06
TIGR03542	402	TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr	2e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	4e-06
PRK06290	410	PRK06290, PRK06290, aspartate aminotransferase; Pr	4e-06
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	7e-06
PRK08636	403	PRK08636, PRK08636, aspartate aminotransferase; Pr	7e-06
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	3e-05
COG3977	417	COG3977, COG3977, Alanine-alpha-ketoisovalerate (o	8e-05
PRK09275	527	PRK09275, PRK09275, aspartate aminotransferase; Pr	2e-04
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-04
TIGR03801	521	TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla	4e-04
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	5e-04
PRK01688	351	PRK01688, PRK01688, histidinol-phosphate aminotran	6e-04
PLN03026	380	PLN03026, PLN03026, histidinol-phosphate aminotran	0.002
PRK00950	361	PRK00950, PRK00950, histidinol-phosphate aminotran	0.002
PRK06358	354	PRK06358, PRK06358, threonine-phosphate decarboxyl	0.003
PRK07366	388	PRK07366, PRK07366, succinyldiaminopimelate transa	0.004

>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase

 Score =  650 bits (1678), Expect = 0.0
 Identities = 292/354 (82%), Positives = 319/354 (90%), Gaps = 1/354 (0%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPS-SSSMAPTSSPAITVD 59
           MRRF+I + +  ++ S +Q+  S S    Q R L+S S   S S  S+   TSS  +T+D
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHKSPSFLSPQPRPLASLSRFSSTSEMSASDSTSSLPVTLD 60

Query: 60  SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFR 119
           ++NPKVLKCEYAVRGEIV+IAQRLQ+EL+TNPGS+ FDEILYCNIGNPQSLGQQPITFFR
Sbjct: 61  TINPKVLKCEYAVRGEIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFR 120

Query: 120 EVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAG 179
           EVLALCDHPS+LD+SET GLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRD IAAG
Sbjct: 121 EVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAG 180

Query: 180 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239
           IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALHGGTL
Sbjct: 181 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTL 240

Query: 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299
           VPYYLDEATGWGLE SE+KKQLE A++KGITVRALVVINPGNPTGQVLAEENQR IV+FC
Sbjct: 241 VPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFC 300

Query: 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           K+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKDISLVSFQSVSKG Y
Sbjct: 301 KQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYY 354

Length = 534

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score =  446 bits (1150), Expect = e-156
 Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 2/299 (0%)

Query: 54  PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
            + TV+ +NP+V+  EYAVRG + + A  +++EL+T  G + FD I+YCNIGNPQ+LGQ+
Sbjct: 3   KSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQK 62

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           P+TF+R+VL+L ++P +L+      LF AD + RA + L+ I G  TGAY+ S G   +R
Sbjct: 63  PLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGG-TGAYTDSAGYPFVR 121

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
             +AA IE RDG P DP+DIFLTDGAS  + +++QLLI   +DG++ PIPQYPLYSA+I 
Sbjct: 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT 181

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
           L GG  VPYYLDE  GW L+  E+++  E A   GIT RALVVINPGNPTGQVL  +   
Sbjct: 182 LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME 241

Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKG 351
            I+ FC ++G+VL+ADEVYQEN+Y  EK F SF+KV   +      D+ LVSF S SKG
Sbjct: 242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKG 300

Length = 481

>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase

 Score =  346 bits (889), Expect = e-117
 Identities = 156/301 (51%), Positives = 207/301 (68%), Gaps = 11/301 (3%)

Query: 52  SSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLG 111
           S  A+  +SLN  V KC+YAVRGE+   A  LQ+E +         +I++ N+GNP +LG
Sbjct: 2   SLKALDYESLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALG 52

Query: 112 QQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
           Q+P+TF R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G
Sbjct: 53  QKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPG 111

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           +R  +A  IE RDG+P+DP  IFLTDGAS  V  ++  +IR E DG+L P+PQYPLYSA+
Sbjct: 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSAT 171

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
           I+L GGTLVPYYL+E+  WGL+ + +++ +  A++KGITVRA+V+INPGNPTGQ L+E N
Sbjct: 172 ISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 231

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSK 350
            R I+ FC +E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSK
Sbjct: 232 LREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSK 291

Query: 351 G 351
           G
Sbjct: 292 G 292

Length = 407

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  148 bits (375), Expect = 4e-41
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 16/190 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ S GI  LR+ IA   + R G   DP  +I +T GA  A+ +    L+ +  D +L P
Sbjct: 61  YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIP 119

Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
            P YP Y A++ L GG  VP  LD E  G+  +  +++    A   K    +A+++ +P 
Sbjct: 120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE---AAITPK---TKAIILNSPN 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V ++E  +AIV+  ++  +++++DE+Y+E VY    +  S  +++     G +D 
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY-DGAEHPSILELA-----GARDR 227

Query: 341 SLVSFQSVSK 350
             ++  S SK
Sbjct: 228 -TITINSFSK 236

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  144 bits (365), Expect = 5e-40
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 15/205 (7%)

Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
           E    +           Y    G+  LR+ IA  +  R G    P +I +T+GA  A+ +
Sbjct: 15  EVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74

Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK 265
           +++ L+    D +L P P YP Y A+  L G  +VP  LDE  G+ L+     + LEAAK
Sbjct: 75  LLRALLN-PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLD----LELLEAAK 129

Query: 266 AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
                 + L + NP NPTG VL+EE    + +  KK G+++++DE Y E VY  E     
Sbjct: 130 TPK--TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP---- 183

Query: 326 FKKVSRSMGYGEKDISLVSFQSVSK 350
                 ++   +    ++  +S SK
Sbjct: 184 ----PPALALLDAYERVIVLRSFSK 204

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score =  131 bits (331), Expect = 1e-34
 Identities = 87/287 (30%), Positives = 135/287 (47%), Gaps = 67/287 (23%)

Query: 70  YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
           Y +RG ++  A+RL++E           +IL  NIGNP   G                  
Sbjct: 15  YDIRGPVLKEAKRLEEEGH---------KILKLNIGNPAPFG------------------ 47

Query: 130 ILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP- 187
                     F A D I R   ++  +P  A G YS S+G+   R  I    + + G P 
Sbjct: 48  ----------FEAPDEILRD--VIRNLP-TAQG-YSDSKGLFSARKAIMQYYQQK-GIPD 92

Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLVPYYLD 245
            D +DI++ +G S  + M MQ L+   N+G  +L P P YPL++A+++L GG  V Y  D
Sbjct: 93  VDVDDIYIGNGVSELIVMAMQALL---NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCD 149

Query: 246 EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
           E  GW          L+  ++K IT   +A+V+INP NPTG V ++E    IV+  ++  
Sbjct: 150 EEAGW-------FPDLDDIRSK-ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHN 201

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
           L++ ADE+Y + +Y       S   ++        D+  V+F  +SK
Sbjct: 202 LIIFADEIYDKILY-DGAVHISIASLA-------PDLLCVTFNGLSK 240

Length = 404

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  112 bits (282), Expect = 8e-28
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + GI  LR+ IAA ++  +G   DP+ + +T GA  A++     L+    D ++ P 
Sbjct: 64  YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVIIPA 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   + L GG  V     E  G+ L T E   QLEAA    IT   +AL++ +P 
Sbjct: 123 PYWVSYPEMVKLAGGVPVFVPTGEENGFKL-TVE---QLEAA----ITPKTKALILNSPS 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
           NPTG V + E   AI D   +  + +L+DE+Y++ VY    +F S
Sbjct: 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVY-DGAEFTS 218

Length = 393

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score =  110 bits (277), Expect = 9e-27
 Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 61/291 (20%)

Query: 34  LSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGS 93
           L+  S   +P S + +  S         + K+    Y VRG +V  A R++       G+
Sbjct: 92  LADPSAPTTPISQTSSEISIGNRRTFKKSHKLDNVLYDVRGPVVDEANRMEAA-----GT 146

Query: 94  HSFDEILYCNIGNPQSLGQQPITFFR---EVLALCDH--PSILDRSETQGLFSADSIERA 148
           H    IL  NIGNP   G      FR   EV+             S+++GLFSA      
Sbjct: 147 H----ILKLNIGNPAPFG------FRTPDEVVYDMAQQLTDTEGYSDSKGLFSAR----- 191

Query: 149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
                    +A   Y+  +G+  +                D +DI+  +G S  +++ M 
Sbjct: 192 ---------KAIMQYAQLKGLPNV----------------DVDDIYTGNGVSELINLSMS 226

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
            L+    D +L P P YPL++A + L GGT V Y  DE + W  +  +++ +        
Sbjct: 227 ALLDD-GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK-------- 277

Query: 269 ITVR--ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           IT R  A+V+INP NPTG +   E  + IVD  ++  L++ +DE+Y   V 
Sbjct: 278 ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVM 328

Length = 517

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score =  108 bits (272), Expect = 2e-26
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 59/297 (19%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + +  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 7   RAMGVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54

Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C                     RA +            Y  S+G+  LR+ I    + +
Sbjct: 55  YC---------------------RAIK-------EGHNYYGPSEGLPELREAIVKREKRK 86

Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++   L+    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYR 145

Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E  GW  +  +++K++          +A+ VINP NPTG +  ++  + I+D   +  
Sbjct: 146 TIEEEGWQPDIDDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHD 199

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW 360
           L +++DE+Y    Y  E K  S   ++       KD+ ++    +SK    +F + W
Sbjct: 200 LPVISDEIYDLMTY--EGKHVSPGSLT-------KDVPVIVMNGLSK---VYFATGW 244

Length = 398

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score =   99 bits (250), Expect = 2e-23
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 23/196 (11%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           AYSHSQGI  LR+  A     + G   +P++I +T+G S A+   M + I    D IL P
Sbjct: 61  AYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAM-MAICDPGDEILVP 118

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P Y  Y+      G  +VP       G+ L + E   ++E      IT   +A+++ NP
Sbjct: 119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKE---EIEKL----ITPKTKAILISNP 171

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
           GNPTG V  +E    + +  KK  L L++DEVY+E VY    K+ S       +    + 
Sbjct: 172 GNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTSA------LSL--EG 222

Query: 340 IS--LVSFQSVSKGRY 353
           +   ++   SVSK RY
Sbjct: 223 LEDRVIIIDSVSK-RY 237

Length = 397

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 18/191 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+H+ GI  LR+ +A  +    G    P  I +T     A+ +  Q L+    D ++   
Sbjct: 57  YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVT 115

Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
           P +P   A+  + G  +V   LD    GW L+      +L AA    IT   RAL + +P
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLD----RLLAA----ITPRTRALFINSP 167

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG   + ++ RAI+  C++ GL ++ADEVY+   Y P  +  SF  ++      E D
Sbjct: 168 NNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA------EPD 221

Query: 340 ISLVSFQSVSK 350
             ++   S SK
Sbjct: 222 DRIIFVNSFSK 232

Length = 382

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score = 90.1 bits (224), Expect = 5e-20
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S G    R+ +A  + +        +D+ LT G S A+ + ++ L       IL P 
Sbjct: 69  YAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANP-GANILVPR 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +PLY    A  G  +  Y L     W ++       LE+   +     A+VVINP NP
Sbjct: 128 PGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDL----DGLESLADEKTV--AIVVINPSNP 181

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            G V + ++ + I +  +K G+ ++ADE+Y   V+  +  F      +
Sbjct: 182 CGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVF-GDAPFIPMASFA 228

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 139 LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD 197
           LF  +++ RA  ++L          Y  + G+  LR+ IAA + AR G   +P  I +T 
Sbjct: 103 LFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITS 162

Query: 198 GASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
           GA  A+ ++++LL+    D +L   P YP    ++   G  ++P  +DE  G   E   +
Sbjct: 163 GAQQALDLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPE--AL 218

Query: 258 KKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           ++ L   K K       V + P   NPTG  ++ E ++A++   +K  ++++ D+ Y E
Sbjct: 219 EEALAQWKPK------AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE 271

Length = 459

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 46/249 (18%)

Query: 70  YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
           Y +R  IV++A++L++            +I + NIG+P + G++   + +E++A      
Sbjct: 15  YEIR-NIVAVAKKLEKLGV---------KITWENIGDPIAKGEKIPDWMKEIVA------ 58

Query: 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD 189
                                  + +    +  Y  ++G+   R+ +A     R G    
Sbjct: 59  -----------------------ELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT 95

Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL-VPYYLDEAT 248
           P+DI   +G   A+  +  LL R     ++ P P Y  +S++ A H G   V Y LD   
Sbjct: 96  PDDIIFFNGLGDAIAKIYGLLRREAR--VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPEN 153

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            W  +  +++ +++   +    +  +++INP NPTG V  +E  R IVD  ++  L ++ 
Sbjct: 154 NWYPDLDDLENKVKYNPS----IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIIC 209

Query: 309 DEVYQENVY 317
           DE+Y   VY
Sbjct: 210 DEIYNNIVY 218

Length = 433

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 84.8 bits (210), Expect = 3e-18
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS   G+   R  IA  +     +    +DI+LT G + A+ ++M +L +   + IL P 
Sbjct: 90  YSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGAN-ILLPR 148

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YPLY A     G  +  + L    GW ++   V+     A A   TV A+V+INP NP
Sbjct: 149 PGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVE-----ALADENTV-AMVIINPNNP 202

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
            G V + E+   I +  +K G++++ADEVY    +   K F
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTF-GSKPF 242

Length = 430

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 7/182 (3%)

Query: 139 LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLT 196
           L  + ++    +   D + G     Y  + G+  LR+ +A  +        D    +   
Sbjct: 12  LGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFG 71

Query: 197 DGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256
            GA   +  ++ LL  +  D IL P P YP Y     L GG +V Y L  +  + L+   
Sbjct: 72  SGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLD--- 128

Query: 257 VKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315
               LEAA  +      +V+  +P NPTG V   E    ++D  K+  ++LL DE Y   
Sbjct: 129 -FDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGF 187

Query: 316 VY 317
           V+
Sbjct: 188 VF 189

Length = 357

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 20/193 (10%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           +Y+ + G+  LR  IA  ++ R     DPND I +T GAS A+ + M+ +I +  D +L 
Sbjct: 52  SYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLI 110

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR--ALVVIN 278
             P +  Y+  + L GG  VP        + ++ +    Q+EAA    IT +  A+++ +
Sbjct: 111 VEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPA----QIEAA----ITAKTKAILLCS 162

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NPTG VL +     I    +K  L++L+DE+Y E  Y  ++ + SF  +    G  E+
Sbjct: 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY--DEAYTSFASIK---GMRER 217

Query: 339 DISLVSFQSVSKG 351
            I +  F   SKG
Sbjct: 218 TILISGF---SKG 227

Length = 378

>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSEN 215
           R    +    G+K  R  +A+ +E   G  A  DP+ I LT GA+ A + ++  ++    
Sbjct: 86  RENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILADPG 144

Query: 216 DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL 274
           D +L P P YP +   +    G  +VP + D +  + +    ++   + A+A  I VR +
Sbjct: 145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++ NP NP G  +       I+DF  ++ + L++DE+Y  +V+    +F S  ++  + G
Sbjct: 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF-SASEFVSVAEIVEARG 263

Query: 335 YGEKDIS 341
           Y  K ++
Sbjct: 264 Y--KGVA 268

Length = 447

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 150 QILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
           +I++ +  R   G + +  G   L   IA   + R  +   P  I    G  P + + ++
Sbjct: 42  EIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIR 101

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAK 267
            L     DG++   P YP +  +I L+G  ++   L ++   + ++       LE A   
Sbjct: 102 AL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDF----DALEKAFVD 156

Query: 268 GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
              V+  ++ NP NPTG+V  +E  R I + C + G+ +++DE++ + V    K  
Sbjct: 157 E-RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211

Length = 388

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    GI  LR  IAA    R G   DP+ ++ +T GA+ A+   +  L+    D +L  
Sbjct: 57  YPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEP-GDEVLLI 115

Query: 222 IPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
            P Y  Y+A IA+ G   VP  L     G+ L+       L AA    +T   RAL+V +
Sbjct: 116 EPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDA----LRAA----VTPRTRALIVNS 167

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           P NPTG VL      AI +   +  L+++ DEVY+  V+
Sbjct: 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVF 206

Length = 387

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 73.9 bits (181), Expect = 1e-14
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           +Y+ + GI   R  IA  +     +   P+D++LT G   A  +++++L R E + IL P
Sbjct: 69  SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEAN-ILLP 127

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +P        H   +  + L    GW ++   V+     A A   T+ A+V+INPGN
Sbjct: 128 RPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVE-----AIADENTI-AMVIINPGN 181

Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           P G V + E+   I +  +K G++++ADEVY   V+
Sbjct: 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF 217

Length = 409

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G    R+ IA+     DG P + +D+ L  G S A+ M +   + +    IL P 
Sbjct: 69  YAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCI-AALANAGQNILVPR 126

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +PLY       G  +  Y L     W ++  +++  L   K       ALVV NP NP
Sbjct: 127 PGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLE-SLIDEKTA-----ALVVNNPSNP 180

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            G V + ++   I+   +++ L ++ADE+Y + V+     F     +S
Sbjct: 181 CGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPVASLS 227

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +Y+H+ G+  LR      ++ +      P  +I +T GAS A+ +  +  I      ++ 
Sbjct: 60  SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRT-ILEPGTEVIL 118

Query: 221 PIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVI 277
           P P YP Y   I L G    P ++D  +TG+ L      + LE A    IT   R +V+ 
Sbjct: 119 PAPIYPGYEPIIRLCGAK--PVFIDTRSTGFRL----TAEALENA----ITEKTRCVVLP 168

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
            P NPTG  L++E  + I D  K + + +L+DE+Y E VY  E+   S
Sbjct: 169 YPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY--EQPHTS 214

Length = 387

>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 65/195 (33%), Positives = 89/195 (45%), Gaps = 21/195 (10%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGI 218
           T  YS S+GI GLR   AA    R G   +P+  +  T G+      M Q  I +  D I
Sbjct: 61  THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQA-ITAPGDVI 119

Query: 219 LCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGI-TVRALV 275
           LCP P YP+++    + GG +  VP   DE         E    LE A    I    AL+
Sbjct: 120 LCPNPSYPIHAFGFIMAGGVIRSVPAEPDE---------EFFPALERAVRHSIPKPIALI 170

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           V  P NPT  V   +  + +V F KK  +++L+D  Y E +Y       S  +V      
Sbjct: 171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSE-IYFDGNPPPSVLQVP----- 224

Query: 336 GEKDISLVSFQSVSK 350
           G KD++ V F S+SK
Sbjct: 225 GAKDVT-VEFTSMSK 238

Length = 405

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score = 71.9 bits (176), Expect = 7e-14
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+   R  IA  +     +    +D+F+T G + A+ + + +L R   + IL P 
Sbjct: 69  YAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGAN-ILLPR 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +P+Y    A     +    L    GW ++   V+     A A   TV ALV+INPGNP
Sbjct: 128 PGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVE-----ALADQNTV-ALVIINPGNP 181

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-----NVYVPEKKFHS 325
            G V + ++ + I +  +K  ++++ADEVY       N +VP   F S
Sbjct: 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS 229

Length = 409

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    G+  LR+ IAA      G   D + +I +T GA+ A+   +  L+R   D ++  
Sbjct: 63  YPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRP-GDEVIVF 121

Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRA-LVVI 277
            P Y  Y+ +I L GG  V   L   D    W        ++  AA    I+ R  L+++
Sbjct: 122 DPSYDSYAPAIELAGGRAVRVALQPPDFRVDW--------QRFAAA----ISPRTRLIIL 169

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           N P NP+G V +  + RA+        + +L+DEVY+  V+
Sbjct: 170 NTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210

Length = 386

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 20/164 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   +R+ IA  +  R G P   + I +T GA+ A+++ ++ ++ +  D ++   
Sbjct: 69  YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFA 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAAKAKGIT--VRALVVINP 279
           P +  Y   +  HGG LV    D       +T +     LEAA    IT   +A+++ +P
Sbjct: 128 PYFVEYRFYVDNHGGKLVVVPTDT------DTFQPDLDALEAA----ITPKTKAVIINSP 177

Query: 280 GNPTGQVLAEENQRAIVDFCKKEG------LVLLADEVYQENVY 317
            NPTG V +EE  +A+    +++       + L++DE Y+E VY
Sbjct: 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221

Length = 394

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204
           IE    ++D +      +Y    GI   R  +A  +         P DIFLT G +  + 
Sbjct: 86  IEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIE 145

Query: 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264
           ++ + L R  N  IL P P +P Y A  A  G  +  + L     W ++   ++     A
Sbjct: 146 IVFESLARP-NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIE-----A 199

Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-----ENVYVP 319
            A   TV A+VVINP NP G V + ++ + + +  +K G+++++DEVY      +N +V 
Sbjct: 200 IADENTV-AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVS 258

Query: 320 EKKFHSFKKV 329
             KF S   V
Sbjct: 259 MGKFASIVPV 268

Length = 462

>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase

 Score = 68.2 bits (167), Expect = 9e-13
 Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
            Y  + G   LR+ I   +E R G P  DP  +    G    V  +  LL     D ++ 
Sbjct: 51  GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVI 110

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-P 279
           P   YP Y     L G T V    D+ T                         L+ +N P
Sbjct: 111 PELAYPTYEVGALLAGATPVAA--DDPTELDPVGP-----------------DLIWLNSP 151

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           GNPTG+VL+ +  RAIV + ++ G V+ +DE Y E
Sbjct: 152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLE 186

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357

>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 21/154 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G   LR+ I   +  R G    DP  +    G+   V  +  LL     D ++ P
Sbjct: 58  YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
              YP Y     L G T+V    D  T  G +                   AL+ +N P 
Sbjct: 118 ELAYPTYEVGARLAGATVVRA--DSLTELGPQRP-----------------ALIWLNSPS 158

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           NPTG+VL  ++ R +V + ++ G V+ +DE Y E
Sbjct: 159 NPTGRVLGVDHLRKVVAWARERGAVVASDECYLE 192

Length = 364

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 30/198 (15%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR+ IAA    R G    P  I +T GAS A+ +    L+    D +L P 
Sbjct: 63  YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVER-GDEVLMPD 121

Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI 277
           P YP     +A   G   LVP                + QL AA  +   G   R +++ 
Sbjct: 122 PSYPCNRHFVAAAEGRPVLVP-----------SGPAERFQLTAADVEAAWGERTRGVLLA 170

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
           +P NPTG  +A +  R IV+  +  G   + DE+YQ   Y  +    S      ++  G+
Sbjct: 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY--DAAPVS------ALSLGD 222

Query: 338 KDISLVSFQSVSKGRYFH 355
             I++ SF   SK  YF+
Sbjct: 223 DVITINSF---SK--YFN 235

Length = 388

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA--DPND-IFLTDGASPAVHMMMQLLI-RSENDG 217
            Y  ++G+  LR  IA  +E R   P   DP   +   +G   A+    Q +I   +   
Sbjct: 59  TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           ++ P P Y +Y  +  L G    PY+L      G+  +   V + +          + L 
Sbjct: 119 VVMPNPFYQIYEGAALLAGAE--PYFLNCTAENGFLPDFDAVPESVWR------RCQLLF 170

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           V +PGNPTG VL+ +  + +++   + G ++ +DE Y E
Sbjct: 171 VCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSE 209

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
           LD +  R       S G +GLR  IA           D + +  T G+S A+++++  L+
Sbjct: 40  LDALVFRD----GPSLGGEGLRAAIADRWR-----GGDAHVVMTTHGSSEAIYLVLTALL 90

Query: 212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271
           R   D ++   P Y   S      G  + P+ L    G+       +  L+A +A  +T 
Sbjct: 91  RP-GDEVVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGF-------RPDLDALRAL-LTP 141

Query: 272 R-ALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           R   VV+N P NPTG  +       +++   + G VLL D  + + V+
Sbjct: 142 RTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVH 189

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 13/164 (7%)

Query: 163 YSHSQGIKG---LRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI 218
            SH  G+ G   LR   A  ++ +      P N+I +T GA+ A+   +   I    D +
Sbjct: 60  QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASL-TAILEPGDKV 118

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAA-KAKGITVRALVV 276
           L P P YP Y   + L G  +V   +D     + L T E+   LE A   +G  ++A+++
Sbjct: 119 LLPAPAYPGYEPIVNLVGAEIV--EIDTTENDFVL-TPEM---LEKAILEQGDKLKAVIL 172

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
             P NPTG   + E  +A+ D  KK  + +++DEVY E  Y  E
Sbjct: 173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE 216

Length = 391

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
           DP ++ + +G+   + ++++  +    D +L P P + +Y  +  L G  +V   L E  
Sbjct: 74  DPENVLVGNGSDELIELLVRAFVEPG-DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-- 130

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            + L+   +   L A + K    + + + NP NPTG +L  E  RA+++   + GLV++ 
Sbjct: 131 -FRLD---LDAILAAIRDK---TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI- 182

Query: 309 DEVYQENVYVPE 320
           DE Y E  + PE
Sbjct: 183 DEAYIE--FSPE 192

Length = 356

>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
           A   Y   +G+  LR+  AA      G    P  + +T G + A    M  L     D +
Sbjct: 59  AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG-AGDEV 117

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
           + P+P Y  +   + + G   V    DE  G  L         EA        RA+ ++ 
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPG-LLPDPA---AAEALITPRT--RAIALVT 171

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           P NPTG V   E    + D  ++ G+ L+ DE Y
Sbjct: 172 PNNPTGVVYPPELLHELYDLARRHGIALILDETY 205

Length = 386

>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A   +M  L     D  L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNKLVLTAGATSANETLMFCLAEP-GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSS 168

Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  S +++  + A+   + V+ +++ NP NP G          +VDF   + + L+
Sbjct: 169 NGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLI 228

Query: 308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
           +DE+Y   V+     F S  +V +       D+S
Sbjct: 229 SDEIYSGTVF-DSPGFVSVMEVLKDRKLENTDVS 261

Length = 468

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + GI  LR+ IA   +   G   D +++ +T GA  A ++  + L+  E D ++ P 
Sbjct: 66  YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE-EGDEVIIPD 124

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
           P +  Y     +     +   L E   +  +  E+   LE      IT R  ++VIN P 
Sbjct: 125 PAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDEL---LEL-----ITKRTRMIVINYPN 176

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           NPTG  L +E  +AI D  +   + +L+DE Y+  +Y
Sbjct: 177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY 213

Length = 391

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           AY+  +G   +R+ +AA + A  G P D  D + +T G   A+ + +   + +  D +  
Sbjct: 73  AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAI 131

Query: 221 PIPQYPLYSASIALHGGTLVPY---YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
             P Y      +    G +VP    YL      GL+      QLE A   G  VR  +  
Sbjct: 132 VQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDL----DQLEEAFKAG--VRVFLFS 185

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           NP NP G V + E    I    ++ G  ++ D++Y   +Y
Sbjct: 186 NPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225

Length = 405

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S G   L + I              N+I  T GA   +++ +Q ++    D ++   
Sbjct: 62  YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHE 120

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKG-ITVR--ALVVIN 278
           P +  Y   I + GG  +           LET E    Q+   K +  IT +  A+++ +
Sbjct: 121 PYFTPYKDQIEMVGGKPII----------LETYEEDGFQINVKKLEALITSKTKAIILNS 170

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ----ENVYVPEKKFHSFKKVSRSMG 334
           P NPTG V ++E    I     +  L +++DEVY        +VP        + + + G
Sbjct: 171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFG 230

Query: 335 YGEKD 339
              KD
Sbjct: 231 SFSKD 235

Length = 384

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 28/189 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y   QGI  L + I   ++  +G   +    I +T G++ A    + L I    D I+  
Sbjct: 61  YQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI-LAITDPGDEIILN 119

Query: 222 IPQYPLYSASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVI 277
            P Y  +  +I + G    LVP   D+           + Q EA +   IT   RA+V I
Sbjct: 120 TPYYFNHEMAITMAGCQPILVP--TDD---------NYQLQPEAIEQ-AITPKTRAIVTI 167

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY----------VPEKKFHSFK 327
           +P NPTG V  E   RA+   C + G+  ++DE Y+   Y          +P    H+  
Sbjct: 168 SPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTIS 227

Query: 328 KVSRSMGYG 336
             S S  YG
Sbjct: 228 LYSLSKAYG 236

Length = 389

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 12/158 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   G   LR  I A +E R+G     N+I +  GA  A+ + +   +    D ++ P 
Sbjct: 66  YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPA 124

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL-VVIN-PG 280
           P +  Y   +  + GT V     E  G+ L T E    LEAA    IT R   +++N P 
Sbjct: 125 PYWVSYPDMVLANDGTPVIVACPEEQGFKL-TPE---ALEAA----ITPRTRWLILNAPS 176

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVL-LADEVYQENVY 317
           NPTG V +    RA+ D   +   VL L D++Y    +
Sbjct: 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRF 214

Length = 402

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 26/157 (16%)

Query: 154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213
            IP  A   Y        LR   AA      G PA    +   +GA  A++++ +LL   
Sbjct: 35  PIPLSAWARYP-DPEYDELRAAAAA----YYGLPAA--SVLPVNGAQEAIYLLPRLLAPG 87

Query: 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
               +L   P Y  Y+ +    G  +V     +             +L AA         
Sbjct: 88  ---RVLVLAPTYSEYARAWRAAGHEVVELPDLD-------------RLPAALE---EADL 128

Query: 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
           LVV NP NPTG+++  E   A+    +  G  L+ DE
Sbjct: 129 LVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDE 165

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 31/211 (14%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASP 201
             I +A  ++D +P      Y  + G K LR+ I+   E R G   DP+  +  + G+  
Sbjct: 16  PFIRKA--LIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE 71

Query: 202 AVHMMMQLLIRSEND--GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
           A+     + I  E D   ++   P YP+Y       GG      L +  G+ L   +V+K
Sbjct: 72  AIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEK 131

Query: 260 QLEAAKAKGITVRALVV-IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
                    I     +V IN P NPTG        +  +  C++ G++L +DE Y E +Y
Sbjct: 132 --------SILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTE-IY 182

Query: 318 VPEKK-------------FHSFKKVSRSMGY 335
             E               FHS  K S   GY
Sbjct: 183 FGEPPHSALEVGIENVLAFHSLSKRSGMTGY 213

The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350

>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGASPAVHMMMQLLIRSENDG-- 217
           +Y  + G+  LR+ IAA +E R G PA DP    L  +G+  A+    Q +I  +  G  
Sbjct: 60  SYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPL 119

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           ++CP P Y +Y  +  L G    PY+L  D A  +  +   V  ++ A        + L 
Sbjct: 120 VVCPNPFYQIYEGAALLAGAE--PYFLNCDPANNFAPDFDAVPAEVWAR------TQLLF 171

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           V +PGNPTG VL  ++ + +     + G V+ +DE Y E
Sbjct: 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSE 210

Length = 396

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 25/194 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMMQLLIRSENDG--IL 219
           Y   +G+   R  +A   + R G   DP    L+  G+   +  +    +   N G  +L
Sbjct: 63  YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV---NPGDIVL 119

Query: 220 CPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
            P P YP+Y       GG   PY   L E  G+ L   +   +  A KAK +       I
Sbjct: 120 VPDPGYPVYRIGTLFAGGE--PYEMPLKEENGF-LPDFDAIPEDIAKKAKLM------FI 170

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPTG V   +  + +V+F K+  +++  D  Y E        F  +K  S     G
Sbjct: 171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT------FDGYKAPSFLEVDG 224

Query: 337 EKDISLVSFQSVSK 350
            KD+  + F S+SK
Sbjct: 225 AKDVG-IEFHSLSK 237

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ ++G+  LR+ IA     R G   DP  I +T G S A+ +   LL+       L   
Sbjct: 65  YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDP-GKHWLLAD 123

Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
           P YP     + L  G   LVP  +   + + L  + V++   A      TV ALV  +P 
Sbjct: 124 PGYPCNRHFLRLVEGAAQLVP--VGPDSRYQLTPALVERHWNAD-----TVGALVA-SPA 175

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           NPTG +L+ +   A+    +  G  L+ DE+Y    Y
Sbjct: 176 NPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY 212

Length = 387

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 8/151 (5%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +   +  R G+  DP  I    G  P++   ++ L     +G++   P YP + ++
Sbjct: 65  LYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTA-PGEGVIVQTPVYPPFLSA 123

Query: 232 IALHGGTLVPYYLDEATG-WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
           +  +G  LV   L    G +  +     + LE A  +    R L++ +P NP G+V   E
Sbjct: 124 VKSNGRELVLNPLKLDPGRYRFDL----EDLEDAITEK--ARLLLLCSPHNPVGRVWTRE 177

Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
               + + C +  +V+++DE++ + VY P K
Sbjct: 178 ELTRLAELCLRHNVVVVSDEIHADLVYPPNK 208

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
           VH+ M     +  D IL P P Y  Y   I + G T     L +   +  +   + +++ 
Sbjct: 107 VHLPMVYA--NPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI- 163

Query: 263 AAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           A KAK      ++++N PGNP   +  E+  + ++ F KK  ++++ D  Y E  Y    
Sbjct: 164 ADKAK------MMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAE-FYFDGN 216

Query: 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
           K  SF  V      G K++  V   S+SK
Sbjct: 217 KPISFLSVP-----GAKEVG-VEINSLSK 239

Length = 399

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 19/138 (13%)

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRA 273
           D +L P P YP+Y       GG   PY+  L E  G+  +   + + + A KAK      
Sbjct: 118 DVVLVPDPGYPVYKIGTIFAGG--EPYFMPLKEENGFLPDLDAIPEDV-AKKAK------ 168

Query: 274 LVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
           L+ IN P NPTG V   E    +VDF KK  +++  D  Y E +     K  SF +V   
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSE-IAYDGYKPPSFLEVP-- 225

Query: 333 MGYGEKDISLVSFQSVSK 350
              G KD+  + F S+SK
Sbjct: 226 ---GAKDVG-IEFHSLSK 239

Length = 385

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
           ++ L  G S A+ M +  L   E D IL P P +P Y      +G  +  Y       W 
Sbjct: 106 NVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164

Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
            +  E+++ L   + K     AL++ NP NP G   + ++   I+  C++  L L++DE+
Sbjct: 165 ADLDEIRR-LVDDRTK-----ALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEI 218

Query: 312 YQENVYVPEK 321
           Y   V+    
Sbjct: 219 YAGMVFNGAT 228

Length = 412

>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 5/184 (2%)

Query: 163 YSHSQGIKGLRDTIAAGI-EARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+K  R  IA  + +AR G    DP  + ++ GA+ A   +M   +    D  L 
Sbjct: 90  FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIM-FCLADPGDVFLI 148

Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P Y  +   +    G  ++P     +  + L         + A+     V+ L++ NP
Sbjct: 149 PSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNP 208

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G +L ++    +V F  ++ + L+ DE+Y   V+     F S  +V   +   E +
Sbjct: 209 SNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFA-GGDFVSVAEVVNDVDISEVN 267

Query: 340 ISLV 343
           + L+
Sbjct: 268 VDLI 271

Length = 496

>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA 247
             P +IF+ +G+   +H++M   I ++ D ++ P P + +YS    + G   +P  L E 
Sbjct: 74  VVPTNIFVGNGSDEIIHLIMLAFI-NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED 132

Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             + +      K +E  + K      LV + NP NPTG V+  E+   I++  K  G+V+
Sbjct: 133 YTYDVG--SFIKVIEKYQPK------LVFLCNPNNPTGSVIEREDIIKIIE--KSRGIVV 182

Query: 307 LADEVYQE 314
           + DE Y E
Sbjct: 183 V-DEAYFE 189

Length = 351

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 23/155 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGIL 219
           Y        L+  +A      D +  DP  I L +G+   +    +LLIR+     D +L
Sbjct: 51  YPDPDP-AELKQALA------DYYGVDPEQILLGNGSDEII----ELLIRAFLEPGDAVL 99

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
            P P Y +Y  S  +HG  +V   LDE     L+  ++   L A   K    + + + +P
Sbjct: 100 VPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDI---LVAIDDK---PKLVFLCSP 151

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
            NPTG +L+  +  A+++   ++ LV++ DE Y E
Sbjct: 152 NNPTGNLLSRSDIEAVLERTPEDALVVV-DEAYGE 185

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G+  L   IA   +   G   DP  ++ +T G + A+   +  LI   ++ IL  
Sbjct: 87  YARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 146

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P Y  Y A++++ G  +    L        + +  + +L+AA       RA+++  P N
Sbjct: 147 -PFYDSYEATLSMAGAKIKTVTLRPP-----DFAVPEDELKAAFTS--KTRAILINTPHN 198

Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           PTG++   E    I   CK+  ++   DEVY +  +
Sbjct: 199 PTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF 234

Length = 413

>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 18/181 (9%)

Query: 136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL 195
           T  L   + +  A  ++  I       Y   +G   LR+ I   +        D ++  +
Sbjct: 37  TNHLGPHEEVREA--MIRCIEEGEYCKYPPPEGFPELRELILKDLGL------DDDEALI 88

Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLE 253
           T GA+ +++++M+  +   ++ +    P Y +     +  G  +  VP Y  E   + L 
Sbjct: 89  TAGATESLYLVMRAFLSPGDNAVTPD-PGYLIIDNFASRFGAEVIEVPIY-SEECNYKLT 146

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
              VK+ ++         R + +I+P NP G    EE  +   +  +     LL D  Y+
Sbjct: 147 PELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR 200

Query: 314 E 314
           +
Sbjct: 201 D 201

Length = 380

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   GI  LR+ +A   E   G   DP  ++ +   AS  ++  +  L+    D ++  
Sbjct: 62  YAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHP-GDEVIYF 120

Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
            P +  Y+  + L G T V   L   D    W           E A A     R ++V  
Sbjct: 121 EPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWD----------EVAAAITPRTRMIIVNT 170

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NP+  V +  +   +    +   +V+L+DEVY E+V     + HS   ++R     E+
Sbjct: 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVY-EHVVFDGARHHS---MARHRELAER 226

Query: 339 DISLVSFQSVSKGRYFH 355
            + + SF     G+ +H
Sbjct: 227 SVIVSSF-----GKSYH 238

Length = 384

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 168 GIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           G+  LR  +AA      G   DP  ++ +T GA+ A+   +  L+    D ++   P Y 
Sbjct: 64  GLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEP-GDEVVLFQPLYD 122

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTG 284
            Y   I   GG      L E   W L          AA A   +   +A+++ NP NP G
Sbjct: 123 AYLPLIRRAGGVPRLVRL-EPPHWRLP--------RAALAAAFSPRTKAVLLNNPLNPAG 173

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +V   E    + +FC++   V + DEV++  V+
Sbjct: 174 KVFPREELALLAEFCQRHDAVAICDEVWEHVVF 206

Length = 387

>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 15/136 (11%)

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           D +L P P YP +     + G  + P  L     W ++ S + +++ A +AK      ++
Sbjct: 122 DVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEV-AQQAK------IL 174

Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
             N P NPT      E    IV F +K  ++L+ D  Y       E  F  ++  S    
Sbjct: 175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA------ELAFDGYQPTSLLEI 228

Query: 335 YGEKDISLVSFQSVSK 350
            G KDI  V F ++SK
Sbjct: 229 PGAKDIG-VEFHTLSK 243

Length = 394

>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
             A G Y   QG   L + +AA +  R G+   P +I LT+G+  A   +  L      D
Sbjct: 64  TEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRAD 123

Query: 217 G----ILCPI-PQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVK-----KQLEAA 264
           G    IL P+ P+Y  Y A   L     V Y   ++      L   + K     + L   
Sbjct: 124 GSLKKILFPLAPEYIGY-ADAGLEEDLFVSYRPNIEL-----LPEGQFKYHVDFEHLHID 177

Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           +       A+ V  P NPTG VL +E    +    ++  + LL D  Y
Sbjct: 178 E----DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY 221

Length = 416

>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 17/156 (10%)

Query: 163 YSHSQGIKGLRDTIAAGI-EARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y   QG   LR+ IA      R     DP +IF++DGA   V  +  L     ++ +   
Sbjct: 71  YGPEQGYPFLREAIAENDYRGR----IDPEEIFISDGAKCDVFRLQSLF--GPDNTVAVQ 124

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGW-GLE----TSEVKKQLEAAKAKGITVRALVV 276
            P YP Y  S  + G   V   LD+   +  +     T+E     E  +   I +  + +
Sbjct: 125 DPVYPAYLDSNVMAGRAGV---LDDDGRYSKITYLPCTAENNFIPELPEEPHIDI--IYL 179

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
            +P NPTG VL +E  + +VD+  + G ++L D  Y
Sbjct: 180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY 215

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
            P  ++L +G   A+  + + ++    D +L P P +  Y  S   H G +  Y + +A 
Sbjct: 81  SPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            +      V   L+A   +    R + + +P NPTG  +  +   A+ +   +E LV++ 
Sbjct: 140 DFEQTADTV---LDAYDGE----RIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVV- 191

Query: 309 DEVYQE 314
           DE Y E
Sbjct: 192 DEAYGE 197

Length = 357

>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)

Query: 168 GIKGLRDTIAAGIEARDGFPA-DP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY 225
           GI+  ++  A  +E   G    DP  ++  + G+ PA+ M+    I +  D  L  +P Y
Sbjct: 82  GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGY 140

Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTG 284
           P+       +GG +    L E   +  +   + K +   KAK      L+ +N P NPTG
Sbjct: 141 PVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAK------LLYLNYPNNPTG 193

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
            V  +E    +VDF K+  ++++ D  Y    +  + K  SF  V      G K++  V 
Sbjct: 194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTF--DGKPLSFLSVP-----GAKEVG-VE 245

Query: 345 FQSVSKG 351
             S+SK 
Sbjct: 246 IHSLSKA 252

Length = 410

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSASIALHGGTLVPYY-LDE 246
            P +I  T+GA+ A  +++  L+    D ++   P Y  LY    +L  G  V Y+ L E
Sbjct: 79  KPENILQTNGATGANFLVLYALVEPG-DHVISVYPTYQQLYDIPESL--GAEVDYWQLKE 135

Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             GW  +  E++ +L     K I +      N  NPTG ++       IV+  +     +
Sbjct: 136 ENGWLPDLDELR-RLVRPNTKLICIN-----NANNPTGALMDRAYLEEIVEIARSVDAYV 189

Query: 307 LADEVY 312
           L+DEVY
Sbjct: 190 LSDEVY 195

Length = 373

>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA-VHMMMQLLIRSENDG 217
           T  YS S+GI  LR  I    + +     DP  ++  T G+    VH++    I +  D 
Sbjct: 64  THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQA--ITNPGDV 121

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
            + P P YP++S +  L GG +    L+    + L+  +  + LE A  +       VV+
Sbjct: 122 AIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVV 181

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPT   + +     +V   KKE   +++D  Y       +  F  +K  S     G
Sbjct: 182 NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYA------DITFDGYKTPSILEVEG 235

Query: 337 EKDISLVSFQSVSK 350
            KD+++ S+ ++SK
Sbjct: 236 AKDVAVESY-TLSK 248

Length = 403

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV-HMMMQLLIRSENDG 217
           T  YS S+GI  LR  I+   + R     DP  +  +T G+   + H+M+  L     D 
Sbjct: 60  THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHG--DT 117

Query: 218 ILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           +L P P YP+  Y A IA      VP          +E  +   +LE A  +      ++
Sbjct: 118 VLVPNPSYPIHIYGAVIAGAQVRSVPL---------VEGVDFFNELERAIRESYPKPKMM 168

Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++  P NPT Q +  E    +V   K+  ++++ D  Y + V      +  +K  S    
Sbjct: 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV------YDGWKAPSIMQV 222

Query: 335 YGEKDISLVSFQSVSK 350
            G KD++ V F ++SK
Sbjct: 223 PGAKDVA-VEFFTLSK 237

Length = 395

>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 145 IERAWQIL------DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
           ++  +Q L            A   Y   QG   L D +A  +    G+     +I LT+G
Sbjct: 46  MDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNG 105

Query: 199 ASPAVHMMMQLLIRSENDG----ILCPI-PQYPLYSASIALHGGTLVPYY----LDEATG 249
           +  A   +  L     +DG    IL P+ P+Y  Y A   L     V       L  A  
Sbjct: 106 SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY-ADAGLEEDLFVSAKPNIELLPA-- 162

Query: 250 WGLETSEVK-KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            G     V  + L   ++ G    A+ V  P NPTG VL +E    +    ++ G+ L+ 
Sbjct: 163 -GQFKYHVDFEHLHIGESTG----AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217

Query: 309 DEVY 312
           D  Y
Sbjct: 218 DNAY 221

Length = 417

>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-- 302
           DE   W    SE++K  +       +++AL ++NP NP    +++E+   I D   ++  
Sbjct: 222 DEENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRP 275

Query: 303 GLVLLADEVY 312
            L+++ D+VY
Sbjct: 276 DLMIITDDVY 285

Length = 527

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-PLYSASIALHGGTLVPYYLDEATGW 250
                   + A    +  L+    D ++     +   Y  +  L G   VP  +D+A   
Sbjct: 19  KAVFVPSGTGANEAALLALLGPG-DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77

Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
           GL+       LE  KAK     AL+VI P   +G VL     + I    K+ G++LL D 
Sbjct: 78  GLDV----AILEELKAKPNV--ALIVITPNTTSGGVLV--PLKEIRKIAKEYGILLLVDA 129

Query: 311 VYQ 313
              
Sbjct: 130 ASA 132

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 187 PADPNDIFLTDGASPAV----HMMMQ--LLIRSENDGILCP-------IPQYPLYSASIA 233
           P    D+F  +G + A+      +    LL + +   ++ P       IP+ P Y   + 
Sbjct: 152 PPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEV- 210

Query: 234 LHGGTLVPYYLDEATGWGLETSEV-KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
                 V    DE T  G  T +   K+LE  K +  +++AL V+NP NP    +++E+ 
Sbjct: 211 ------VRIKADEMTEDGTHTWQYPDKELE--KLRDPSIKALFVVNPSNPPSVAMSDESI 262

Query: 293 RAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHS 325
             IVD    +   L++L D+VY    +V +  F S
Sbjct: 263 EKIVDIVANDRPDLMILTDDVY--GTFVDD--FRS 293

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 21/145 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--------LTDGASPAVHMMMQLLIRSE 214
           Y+  QGI  LRD     +   +  P+              LT G S    + +      +
Sbjct: 40  YAPPQGIPELRDLWQEKMLREN--PSLSGKKMSLPIVTNALTHGLSLVADLFV-----DQ 92

Query: 215 NDGILCPIPQYPLYSASIAL-HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
            D +L P   +  Y  +     G  +V Y + +  G G +T  +K+ L+AA  KG   + 
Sbjct: 93  GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFDTDALKEALQAAYNKG---KV 148

Query: 274 LVVIN-PGNPTGQVLAEENQRAIVD 297
           +V++N P NPTG    E+   AIV+
Sbjct: 149 IVILNFPNNPTGYTPTEKEATAIVE 173

Length = 388

>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 26/134 (19%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRS----ENDGIL-CPIPQYPLY--SASIALHGGTLVP 241
            P  + ++ GA   +    +LLIR+      D IL CP P Y +Y  SA         VP
Sbjct: 73  KPEQVLVSRGADEGI----ELLIRAFCEPGKDAILYCP-PTYGMYSVSAETIGVEIRTVP 127

Query: 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK 300
              +    W L+   +   L+  K        +V + +P NPTG ++  ++ R +++  +
Sbjct: 128 TLDN----WQLDLPAIADNLDGVK--------VVYVCSPNNPTGNLINPQDLRTLLELTR 175

Query: 301 KEGLVLLADEVYQE 314
            + +V +ADE Y E
Sbjct: 176 GKAIV-VADEAYIE 188

Length = 351

>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 26/147 (17%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A   G+E          +I +  GA   + ++M+ ++   +  I CP P + +Y 
Sbjct: 91  LRAALAEDSGLE--------SENILVGCGADELIDLLMRCVLDPGDKIIDCP-PTFGMYV 141

Query: 230 ASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287
              A++G  +  VP   D    + L+   + + +E  K K      L + +P NP G ++
Sbjct: 142 FDAAVNGAEVIKVPRTPD----FSLDVPRIVEAVETHKPK-----LLFLTSPNNPDGSII 192

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQE 314
           ++++   I++      LV+L DE Y E
Sbjct: 193 SDDDLLKILEL---PILVVL-DEAYIE 215

Length = 380

>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 17/137 (12%)

Query: 180 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239
           +    G P + N I   DG    +  +M+  I    D ++ P P +  Y  S   HG   
Sbjct: 78  LSKYTGVPVE-NIIVGGDGMDEVIDTLMRTFI-DPGDEVIIPTPTFSYYEISAKAHGAKP 135

Query: 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPGNPTGQVLAEENQRAIVD 297
           V  Y      + L+   V   L A     IT +  V+    P NPTG ++ EE+ R I++
Sbjct: 136 V--YAKREEDFSLDVDSV---LNA-----ITEKTKVIFLCTPNNPTGNLIPEEDIRKILE 185

Query: 298 FCKKEGLVLLADEVYQE 314
               + LV + DE Y E
Sbjct: 186 ST--DALVFV-DEAYVE 199

Length = 361

>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 274 LVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           LV + NP NPTGQ++++E  + I+D C+K  + L+ DE + +
Sbjct: 144 LVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMD 185

Length = 354

>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219
           T  Y    G    R+  A   E R G   DP    L    S      + L + +  D  L
Sbjct: 61  THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFAL 120

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
              P YP ++  + L GG + P  L     +    +++  ++  A+A     R +V+  P
Sbjct: 121 LLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV-LAQA-----RLMVLSYP 174

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLL-----ADEVYQENVYVP-------EK----KF 323
            NPT  +      +  V FC++  LVL+      D V+   V  P       EK    +F
Sbjct: 175 HNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEF 234

Query: 324 HSFKKVSRSMG 334
            +  K S +MG
Sbjct: 235 FTLSK-SYNMG 244

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PLN02231	534	alanine transaminase	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PLN02368	407	alanine transaminase	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK06855	433	aminotransferase; Validated	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PLN02187	462	rooty/superroot1	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07682	378	hypothetical protein; Validated	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07324	373	transaminase; Validated	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PLN02397	423	aspartate transaminase	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	99.98
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.98
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.97
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.97
PRK06225	380	aspartate aminotransferase; Provisional	99.97
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.97
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.97
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.97
PRK03321	352	putative aminotransferase; Provisional	99.97
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.97
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.97
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.97
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.97
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.97
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.97
PRK08354	311	putative aminotransferase; Provisional	99.97
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.96
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.96
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.96
PRK07908	349	hypothetical protein; Provisional	99.96
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.96
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.95
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.95
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.94
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.94
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.92
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.89
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.88
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.88
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.87
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.86
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.86
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.86
PRK07049	427	methionine gamma-lyase; Validated	99.85
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.85
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.85
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.85
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.83
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.83
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.83
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.83
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.83
PRK10534	333	L-threonine aldolase; Provisional	99.83
PLN02721	353	threonine aldolase	99.82
PLN02242	418	methionine gamma-lyase	99.82
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.82
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.82
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.82
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	99.81
PRK06234	400	methionine gamma-lyase; Provisional	99.81
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.81
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.81
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.8
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.8
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.8
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.8
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.79
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.79
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.79
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.79
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.79
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.79
PRK02948	381	cysteine desulfurase; Provisional	99.79
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.79
PRK02627	396	acetylornithine aminotransferase; Provisional	99.79
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.79
PRK08045	386	cystathionine gamma-synthase; Provisional	99.79
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.78
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.78
PRK07179	407	hypothetical protein; Provisional	99.78
PRK06460	376	hypothetical protein; Provisional	99.78
PRK07503	403	methionine gamma-lyase; Provisional	99.78
PRK08861	388	cystathionine gamma-synthase; Provisional	99.78
PRK08249	398	cystathionine gamma-synthase; Provisional	99.77
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.77
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.77
PLN02822	481	serine palmitoyltransferase	99.77
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.76
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.76
PRK07811	388	cystathionine gamma-synthase; Provisional	99.76
PRK08776	405	cystathionine gamma-synthase; Provisional	99.76
PRK07050	394	cystathionine beta-lyase; Provisional	99.76
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.76
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.75
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.75
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.75
PLN02409	401	serine--glyoxylate aminotransaminase	99.75
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.75
PRK14012	404	cysteine desulfurase; Provisional	99.75
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.74
PRK06767	386	methionine gamma-lyase; Provisional	99.74
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.73
PRK09028	394	cystathionine beta-lyase; Provisional	99.73
PRK13392	410	5-aminolevulinate synthase; Provisional	99.73
PLN02483	489	serine palmitoyltransferase	99.73
PRK05939	397	hypothetical protein; Provisional	99.73
PRK07582	366	cystathionine gamma-lyase; Validated	99.72
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK08574	385	cystathionine gamma-synthase; Provisional	99.72
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.72
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.71
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.71
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.71
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.7
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.7
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.7
PRK05967	395	cystathionine beta-lyase; Provisional	99.7
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.69
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.69
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.69
PRK07671	377	cystathionine beta-lyase; Provisional	99.69
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.69
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.68
PRK08064	390	cystathionine beta-lyase; Provisional	99.68
PLN02509	464	cystathionine beta-lyase	99.68
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.68
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.67
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.66
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.66
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.66
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.66
PRK09064	407	5-aminolevulinate synthase; Validated	99.66
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.66
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.66
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.65
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.65
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.64
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.64
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.64
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.63
PLN02651	364	cysteine desulfurase	99.63
PRK13393	406	5-aminolevulinate synthase; Provisional	99.62
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.62
PRK05968	389	hypothetical protein; Provisional	99.62
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.62
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.62
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.62
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.62
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.61
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.6
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.59
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.58
PRK07505	402	hypothetical protein; Provisional	99.57
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.56
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.54
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.54
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.54
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.53
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.53
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.52
PRK04260	375	acetylornithine aminotransferase; Provisional	99.5
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.5
PRK08114	395	cystathionine beta-lyase; Provisional	99.49
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.49
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.48
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.48
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.46
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.45
PLN02955	476	8-amino-7-oxononanoate synthase	99.44
PLN02624	474	ornithine-delta-aminotransferase	99.41
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.4
PLN03032	374	serine decarboxylase; Provisional	99.4
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.39
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.39
PRK04311	464	selenocysteine synthase; Provisional	99.39
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.39
PLN00144	382	acetylornithine transaminase	99.38
PRK02769	380	histidine decarboxylase; Provisional	99.38
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.37
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.37
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.37
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.36
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.34
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.33
PRK06434	384	cystathionine gamma-lyase; Validated	99.33
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.32
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	99.31
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.3
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.29
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.29
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.29
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.27
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.27
PRK13237	460	tyrosine phenol-lyase; Provisional	99.25
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.25
PLN02590	539	probable tyrosine decarboxylase	99.24
PLN02880	490	tyrosine decarboxylase	99.22
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.22
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.22
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.21
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.18
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.18
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.18
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.17
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.17
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.17
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.17
PRK15029	755	arginine decarboxylase; Provisional	99.16
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.16
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.15
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.15
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.14
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.11
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.11
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.1
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.08
PLN02263	470	serine decarboxylase	99.06
PRK06541	460	hypothetical protein; Provisional	99.05
PRK13578	720	ornithine decarboxylase; Provisional	99.05
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.04
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	98.99
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.95
PRK15400	714	lysine decarboxylase CadA; Provisional	98.94
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.93
PLN02724	805	Molybdenum cofactor sulfurase	98.93
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.89
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.89
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.88
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.88
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	98.88
PRK03080	378	phosphoserine aminotransferase; Provisional	98.86
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.85
PRK13580	493	serine hydroxymethyltransferase; Provisional	98.84
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.81
PLN02271	586	serine hydroxymethyltransferase	98.79
PRK05965	459	hypothetical protein; Provisional	98.79
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.77
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.77
KOG1368	384	consensus Threonine aldolase [Amino acid transport	98.77
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.76
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.75
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.75
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.74
PRK06062	451	hypothetical protein; Provisional	98.72
PRK07482	461	hypothetical protein; Provisional	98.72
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.72
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	98.71
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.71
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.71
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.68
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.68
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.68
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.67
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.67
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.67
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.66
PRK12403	460	putative aminotransferase; Provisional	98.65
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.64
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.64
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.64
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.64
PRK05367	954	glycine dehydrogenase; Provisional	98.64
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.63
PRK06917	447	hypothetical protein; Provisional	98.63
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.63
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	98.62
PRK07046	453	aminotransferase; Validated	98.61
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.6
PRK07481	449	hypothetical protein; Provisional	98.59
COG4100	416	Cystathionine beta-lyase family protein involved i	98.59
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.58
PRK07480	456	putative aminotransferase; Validated	98.58
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.57
PRK06105	460	aminotransferase; Provisional	98.57
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.57
PRK07036	466	hypothetical protein; Provisional	98.53
PRK07678	451	aminotransferase; Validated	98.51
PRK06149	972	hypothetical protein; Provisional	98.5
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	98.5
PRK12566	954	glycine dehydrogenase; Provisional	98.49
PRK06148	1013	hypothetical protein; Provisional	98.48
PRK07483	443	hypothetical protein; Provisional	98.48
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.44
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.4
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.37
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.35
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.32
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.21
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.18
PRK08297	443	L-lysine aminotransferase; Provisional	98.18
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.14
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.13
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.11
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.04
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.0
PRK12462	364	phosphoserine aminotransferase; Provisional	97.98
PRK05367	954	glycine dehydrogenase; Provisional	97.93
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	97.88
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.81
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	97.8
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	97.8
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.77
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.75
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	97.7
PLN02452	365	phosphoserine transaminase	97.65
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	97.6
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.6
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.39
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.06
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	96.71
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	96.4
PLN02672	1082	methionine S-methyltransferase	96.22
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	95.95
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	95.31
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	94.85
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	93.98
PRK12566	954	glycine dehydrogenase; Provisional	93.69
COG2102	223	Predicted ATPases of PP-loop superfamily [General	93.43
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	91.93
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	89.63
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	88.64
PRK08265	261	short chain dehydrogenase; Provisional	88.17
KOG1465	353	consensus Translation initiation factor 2B, beta s	88.02
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	85.74
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.51
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	84.47
TIGR03679	218	arCOG00187 arCOG00187 universal archaeal metal-bin	83.99
cd02742	303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	81.33
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	81.14
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	80.71
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	80.3

>PLN02231 alanine transaminase

Probab=100.00  E-value=4.2e-62  Score=491.44  Aligned_cols=355  Identities=82%  Similarity=1.233  Sum_probs=302.5

Q ss_pred             CchhhhcccccccccccccccC--cC-Cccccccccc---cccccccCCCCCCCCCCCCCcccccccChhhhccccchhc
Q 018147            1 MRRFVIGRGRNFLNRSHQQNLL--SS-SSSHCQSRFL---SSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRG   74 (360)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (360)
                      |++++.++.+++.++|..-...  +. +..|++.++.   ++++. ++    ..+.++...+|+++||++|.+++|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~y~vrg   75 (534)
T PLN02231          1 MRRFLINQAKGLVDHSRRQHHKSPSFLSPQPRPLASLSRFSSTSE-MS----ASDSTSSLPVTLDTINPKVLKCEYAVRG   75 (534)
T ss_pred             CchHHHhHHHHHHHHhhhhhhcCCCCCCCCCCchhHHHhhhhhhh-cc----cccccCCCcCChhhcCHHHHHhhhhccc
Confidence            8888888888887765433111  11 2223332221   11111 11    1233466789999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHc
Q 018147           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (360)
Q Consensus        75 ~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~  154 (360)
                      +|+.+|++++++|+++++++||++||++|||||+.++|+|++|+|+++++++.|+++++..++..+|.++++++.+.+.+
T Consensus        76 ~~~~~a~~~~~~~~~~~~~~pf~~~~~~nig~p~~~~~~~~~~~r~v~~~~~~p~~i~~~~~~~~fp~~~i~~a~~~l~~  155 (534)
T PLN02231         76 EIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSLLDKSETHGLFSADAIERAWQILDQ  155 (534)
T ss_pred             hHHHHHHHHHHHHhcCCCcCChhhhhhhccCCHHHcCCCccHHHHHHHHhccCCccCCCCCccccCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999888876


Q ss_pred             CCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH
Q 018147          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL  234 (360)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~  234 (360)
                      .......+|+++.|.++||++||+|+.+++|+++++++|++|+|+++|+..++++++..+||+|+++.|+|+.|...++.
T Consensus       156 ~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~  235 (534)
T PLN02231        156 IPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIAL  235 (534)
T ss_pred             cCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHH
Confidence            53224778999999999999999999999999999999999999999999999999844799999999999999999999


Q ss_pred             cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       235 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +|++++.++++++++|++|+++|++++++.+.++.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|++
T Consensus       236 ~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~  315 (534)
T PLN02231        236 HGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQE  315 (534)
T ss_pred             cCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence            99999999999888899999999999987666666799999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc--ccccccC
Q 018147          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY--FHFFSKW  360 (360)
Q Consensus       315 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~--g~~RvGw  360 (360)
                      ++|++..++.++.++...++..+.++++|+++||||+|.  +|+|+||
T Consensus       316 l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy  363 (534)
T PLN02231        316 NVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  363 (534)
T ss_pred             cccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEE
Confidence            999654468888887654432123447999999999875  6999999

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.7e-63  Score=453.90  Aligned_cols=300  Identities=58%  Similarity=0.933  Sum_probs=288.3

Q ss_pred             CCCCCcccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCC
Q 018147           50 PTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS  129 (360)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~  129 (360)
                      +.+.+.+|.+++|++|.+++|++||+|..||.|++++|++| .++||++||++|||||+.+||+|++|+|||+++|.+|.
T Consensus         2 ~~~~~~lt~~~~N~~V~k~eYAVRG~i~~rA~El~~eL~~~-~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~   80 (475)
T KOG0258|consen    2 FRSAKALTLDSLNPNVKKAEYAVRGPIVIRADELEKELKKG-VKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPE   80 (475)
T ss_pred             CccccccchhhcChhhhhhhhhhccchhhhHHHHHHHHHhc-ccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChh
Confidence            34667899999999999999999999999999999999999 67999999999999999999999999999999999999


Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~  209 (360)
                      ++|.++    +|.++++++...+...++ +.+.|+.++|++-+|+.+|+|+.+|+|.+++|++|++|.|++.|+..++..
T Consensus        81 lLd~~~----fp~Dai~RA~~~L~~~gG-s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l  155 (475)
T KOG0258|consen   81 LLDSPE----FPTDAIKRAKRILNDCGG-SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSL  155 (475)
T ss_pred             hcCCCC----CCHHHHHHHHHHHHhcCC-cccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHH
Confidence            999876    999999999999999886 799999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       210 l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      ++.++++.|++|.|+||.|...+..+|+..+.|.++++.+|.+|.++|++.+.+++ ++.++++++++||.||||+++++
T Consensus       156 ~~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~  234 (475)
T KOG0258|consen  156 LIAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSE  234 (475)
T ss_pred             HhcCCCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcH
Confidence            99889999999999999999999999999999999999999999999999999988 88999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC-CceEEEEeccCcCccccc
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~  356 (360)
                      +.+++|+.+|.+++++++.||+|++++|.+..+|+|+++++.+|+..|+ ++.++.++|.||++.|+|
T Consensus       235 e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gEC  302 (475)
T KOG0258|consen  235 ENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGEC  302 (475)
T ss_pred             HHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeee
Confidence            9999999999999999999999999999987789999999999998887 889999999999999865

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=3.2e-53  Score=424.72  Aligned_cols=307  Identities=51%  Similarity=0.860  Sum_probs=275.8

Q ss_pred             CCcccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccc
Q 018147           53 SPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILD  132 (360)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~  132 (360)
                      ++.++++++|+++.+++|++++++..+|+++++++++|++++|+.+||+|+||+|+.+|++|.+++|++++....|++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~   81 (481)
T PTZ00377          2 MKSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLE   81 (481)
T ss_pred             CCcCCccccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhc
Confidence            46789999999999999999999999999999999999888999999999999998889999999999999999999999


Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      ++.+...+|..+++++.+.++.... ....|++..|.++||+++|+++.+++|+.+++++|++|+|+++++..++++++.
T Consensus        82 ~~~~~~~~P~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~  160 (481)
T PTZ00377         82 DPSVSSLFPADVVARAKEYLNAIGG-GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG  160 (481)
T ss_pred             CccccccCCHHHHHHHHHHHHhCCC-cccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc
Confidence            9988888999999998877766432 367899999999999999999999999999999999999999999999999973


Q ss_pred             CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHH
Q 018147          213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                      ++||+|+++.|+|+.|...++.+|++++.++++++++|++|+++|++++++..+++.++|+|+++|||||||.+++.+++
T Consensus       161 ~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~  240 (481)
T PTZ00377        161 DPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVM  240 (481)
T ss_pred             CCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHH
Confidence            39999999999999999999999999999999988889999999999998755555579999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC-CceEEEEeccCcCc-c-ccccccC
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGR-Y-FHFFSKW  360 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~i~~~S~SK~~-~-g~~RvGw  360 (360)
                      ++|+++|+++|++||+||+|.+++|++..++.++.+...++...++ +.++|+++||||++ + +|+|+||
T Consensus       241 ~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~  311 (481)
T PTZ00377        241 EEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGY  311 (481)
T ss_pred             HHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEE
Confidence            9999999999999999999999999654357787766555543221 23689999999986 4 7999999

>PLN02368 alanine transaminase

Probab=100.00  E-value=1.9e-50  Score=395.33  Aligned_cols=297  Identities=52%  Similarity=0.880  Sum_probs=253.2

Q ss_pred             CcccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCcccc
Q 018147           54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDR  133 (360)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~  133 (360)
                      +.++++.+|+++.+++++.++.+..+|.++++++         .+||+|++|+|++.||+|.+|.|||+++++++-.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g---------~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~   74 (407)
T PLN02368          4 KALDYESLNENVKKCQYAVRGELYLRASELQKEG---------KKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDD   74 (407)
T ss_pred             CCCChhhcCHHHHhhhhhcCCHHHHHHHHHHHHh---------hhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCC
Confidence            4588999999999999999999999999998874         4899999999999999999999999999998644432


Q ss_pred             CccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      ......+|++.++++...+..... ....|++..|.++||+++|+|+.+++|+.+++++|++|+|+++++..++.+++.+
T Consensus        75 p~~~~~~p~~~i~~a~~~l~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~  153 (407)
T PLN02368         75 PNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG  153 (407)
T ss_pred             ccccccCCHHHHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC
Confidence            221123577777776655532211 3678999999999999999999998899999999999999999999999988734


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      +||+|++++|+|+.|...++.+|++++.++++++++|++|++.|++++++...++.++|+++++|||||||.+++.++++
T Consensus       154 pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~  233 (407)
T PLN02368        154 EKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR  233 (407)
T ss_pred             CCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHH
Confidence            99999999999999999999999999999998887899999999999986544445789999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC-CCceEEEEeccCcCcc--ccccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGRY--FHFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~i~~~S~SK~~~--g~~RvGw  360 (360)
                      +|+++|+++|++||+||+|.+++|++..++.|+.++..++...+ .+.++|+++||||+|+  +|+|+||
T Consensus       234 ~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy  303 (407)
T PLN02368        234 EILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGY  303 (407)
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEE
Confidence            99999999999999999999999986435678776654443111 1237999999999985  8999999

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-44  Score=349.87  Aligned_cols=240  Identities=28%  Similarity=0.490  Sum_probs=209.2

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~  146 (360)
                      +..+.....+...+.++.+..   .   + .++|+|++|+|++                             ..|+.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~---~---~-~~vi~l~iG~Pd~-----------------------------~~p~~i~~   48 (393)
T COG0436           5 KVLPSYTFAVLAEAKAAAELK---G---K-EDVIDLSIGEPDF-----------------------------PTPEHIIE   48 (393)
T ss_pred             ccCcchhHHHHhHHHHHHHhc---C---C-CCEEEeCCCCCCC-----------------------------CCCHHHHH
Confidence            334455555566555555552   1   1 4799999999998                             56889999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHccCCCCEEEEcCCCc
Q 018147          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQY  225 (360)
Q Consensus       147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y  225 (360)
                      ++.+.+.+..   . .|.+..|+++||++||+++.+++|..+++++ |++|+|+++|+..++.+++ +|||+|++++|.|
T Consensus        49 a~~~a~~~~~---~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-~pGDeVlip~P~Y  123 (393)
T COG0436          49 AAIEALEEGG---T-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIPDPGY  123 (393)
T ss_pred             HHHHHHhccc---C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCC
Confidence            9998887742   2 6889999999999999999999999999987 9999999999999999999 5999999999999


Q ss_pred             hHHHHHHHHcCCeEEEeecCCC-CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCC
Q 018147          226 PLYSASIALHGGTLVPYYLDEA-TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (360)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i  304 (360)
                      +.|...++.+|++++.++++.+ ++|.+|+++|++++++      ++|+|+||+||||||.+++++++++|+++|++||+
T Consensus       124 ~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i  197 (393)
T COG0436         124 PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI  197 (393)
T ss_pred             cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe
Confidence            9999999999999999998765 4899999999999998      89999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       305 ~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +||+||+|.+++|++. +++|+....+.     .+ ++|+++||||+|+ .|+||||
T Consensus       198 ~ii~DEiY~~l~yd~~-~~~s~~~~~~~-----~~-~~i~i~s~SK~~~mtGwRvG~  247 (393)
T COG0436         198 IIISDEIYEELVYDGA-EHPSILELAGA-----RD-RTITINSFSKTYGMTGWRIGW  247 (393)
T ss_pred             EEEEehhhhhcccCCC-CcCCHhhcCCC-----cc-eEEEEecccccccccccceeE
Confidence            9999999999999985 47787766431     13 7999999999997 6999999

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=3.6e-41  Score=340.39  Aligned_cols=246  Identities=30%  Similarity=0.515  Sum_probs=216.5

Q ss_pred             ccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        60 ~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      .+++++.++.+++++.+...+.++++++         .++|+|++|+|...+.                          .
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~i~l~~G~p~~~~~--------------------------~  162 (517)
T PRK13355        118 KKSHKLDNVLYDVRGPVVDEANRMEAAG---------THILKLNIGNPAPFGF--------------------------R  162 (517)
T ss_pred             ChhHHhhccCccHHHHHHHHHHHHHHcC---------CCeEEecCcCCCcCCC--------------------------C
Confidence            3789999999999999999998886652         4899999999974321                          3


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      .|+.+++++.+.+..     ...|++..|.++||++||+++.++++..+++++|++|+|+++++.+++.+++ ++||+|+
T Consensus       163 ~p~~~~~~~~~~~~~-----~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-~~Gd~Vl  236 (517)
T PRK13355        163 TPDEVVYDMAQQLTD-----TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-DDGDEVL  236 (517)
T ss_pred             CCHHHHHHHHHHhhc-----CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC-CCCCEEE
Confidence            488888888777653     3479999999999999999998877767899999999999999999999998 5999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.|...++.+|++++.++++++++|.+|++++++++++      ++|+|+++|||||||.+++.+++++|+++|
T Consensus       237 i~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a  310 (517)
T PRK13355        237 IPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIA  310 (517)
T ss_pred             EcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHH
Confidence            99999999999999999999999998887899999999998876      799999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++|+++||+||+|.+++|++. ++.++..+.       +++.+|+++||||.| .+|+|+||
T Consensus       311 ~~~~~~ii~DE~Y~~~~~~~~-~~~s~~~~~-------~~~~vi~~~S~SK~~~~~G~RiG~  364 (517)
T PRK13355        311 REHQLIIFSDEIYDRLVMDGL-EHTSIASLA-------PDLFCVTFSGLSKSHMIAGYRIGW  364 (517)
T ss_pred             HHcCcEEEEehhhhhhcCCCC-CcccHHHhC-------CCCeEEEEecchhhccCcccceEE
Confidence            999999999999999999764 466766542       354688899999998 57999999

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-41  Score=316.84  Aligned_cols=239  Identities=25%  Similarity=0.377  Sum_probs=212.3

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCccccee-ccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY-CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~-l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      |+++...++.++-++..++.|.              ++.+ |++|.|+.                             ..
T Consensus         9 ~~~l~~~~~~vw~e~~~la~e~--------------~~~~~LgqGfp~~-----------------------------~~   45 (420)
T KOG0257|consen    9 NRNLSTSKPYVWTEINRLAAEH--------------KVPNPLGQGFPDF-----------------------------PP   45 (420)
T ss_pred             cccccccCCcHHHHHHHHHHhc--------------CCCCcccCCCCCC-----------------------------CC
Confidence            4555666677777777777653              3334 99999998                             45


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      |.-+.+++.+.+.+.   ..++|.+..|+++|++++++.+++.+|....++ +|++|.|+.++|..++..++ ++||+|+
T Consensus        46 P~fv~ea~~~~~~~~---~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-~~GDeVi  121 (420)
T KOG0257|consen   46 PKFVTEAAKNAAKEP---STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-NPGDEVI  121 (420)
T ss_pred             cHHHHHHHHHHhccc---hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-CCCCEEE
Confidence            777888888888775   378999999999999999999999888777766 69999999999999999999 5999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecC------CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLD------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~------~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      +.+|.|..|...++++|++++.+++.      ..++|.+|.++|+.++++      ++|+|++|+||||||.++++++|+
T Consensus       122 i~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe  195 (420)
T KOG0257|consen  122 VFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELE  195 (420)
T ss_pred             EecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHH
Confidence            99999999999999999999999988      456899999999999998      899999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      +|+++|++||+++|.||+|..++|++. ++..+..+ ++|.+     ++|.++|+||+|+- |+|+||
T Consensus       196 ~ia~l~~k~~~lvisDevYe~~v~d~~-~h~r~asl-Pgm~e-----rtitvgS~gKtf~~TGWrlGW  256 (420)
T KOG0257|consen  196 RIAELCKKHGLLVISDEVYEWLVYDGN-KHIRIASL-PGMYE-----RTITVGSFGKTFGVTGWRLGW  256 (420)
T ss_pred             HHHHHHHHCCEEEEEhhHhHHHhhCCC-cceeeecC-Cchhh-----eEEEeccccceeeeeeeeeee
Confidence            999999999999999999999999986 57888777 88775     89999999999987 999999

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=1.4e-39  Score=317.96  Aligned_cols=245  Identities=21%  Similarity=0.275  Sum_probs=202.5

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++++..++..++..+...+++.++.    +     .++|++++|+|.+                             .+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~~~~~~-----------------------------~~~   45 (388)
T PRK07366          4 AQRLQPLQSNVFADMDRAKAQARAA----G-----KELIDLSLGSSDL-----------------------------PAP   45 (388)
T ss_pred             hhhhhcCCccHHHHHHHHHHHHHhc----C-----CCeEEeCCCCCCC-----------------------------CCC
Confidence            3455555555554444444444443    1     3799999999986                             457


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      +.+.+++.+.+...   ....|++..|.++||+++|+|+.+++|+.++++ +|++|+|+++++..++++++. +||+|++
T Consensus        46 ~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~-~gd~Vlv  121 (388)
T PRK07366         46 AHALEAIAQSLHDP---STHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLN-PGDFALL  121 (388)
T ss_pred             HHHHHHHHHHHhCc---ccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCC-CCCEEEE
Confidence            77888887766542   256799999999999999999999999999998 699999999999999999994 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|+.|...++..|++++.++++++++|.+|++++++.+.+      ++|+++++|||||||.+++.+++++|+++|+
T Consensus       122 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~  195 (388)
T PRK07366        122 LDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQ  195 (388)
T ss_pred             cCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHH
Confidence            9999999999999999999999998777789999999887765      6899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|++||+||+|.++.|++.....++.....     ..+ ++|+++||||.|+ +|+|+||
T Consensus       196 ~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~-----~~~-~vi~~~SfSK~~g~~GlRiG~  250 (388)
T PRK07366        196 QHDLVLVHDFPYVDLVFDGEVEPPSILQADP-----EKS-VSIEFFTLSKSYNMGGFRIGF  250 (388)
T ss_pred             HcCeEEEEecchhhcccCCCCCCCChhhCCC-----Ccc-cEEEEeecccccCCcchhhee
Confidence            9999999999999999876422445544321     012 5899999999995 8999999

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=3.7e-39  Score=315.73  Aligned_cols=249  Identities=24%  Similarity=0.368  Sum_probs=201.3

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++++.+++..+...+...++++.+.    .+    .++|++++|+|++                             .+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~i~l~~~~p~~-----------------------------~~~   44 (396)
T PRK09147          2 NPRLDRLQPYPFEKLRALFAGVTPP----AD----LPPISLSIGEPKH-----------------------------PTP   44 (396)
T ss_pred             cchhhcCCcchHHHHHHHHHhhhhc----cC----CCeEecCCCCCCC-----------------------------CCC
Confidence            3445556666555555555444221    12    5899999999987                             346


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHccCC---CC
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSE---ND  216 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~-~I~~t~Ga~~al~~~~~~l~~~~---gd  216 (360)
                      +.+.+++.+.+..     ...|++..|.++||+++|+++.+++|+. ++++ +|++|+|+++++..++++++. +   ||
T Consensus        45 ~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-~~~~gd  118 (396)
T PRK09147         45 AFIKDALAANLDG-----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVID-RDGPGP  118 (396)
T ss_pred             HHHHHHHHHHhhh-----hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcC-CCCCCC
Confidence            6677777666542     5679999999999999999999999988 8986 899999999999999999994 8   89


Q ss_pred             EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                      .|+++.|+|+.|...++..|++++.+|++++++|++|++.+++.+.+      ++|+++++|||||||.+++.+++++|+
T Consensus       119 ~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~  192 (396)
T PRK09147        119 LVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLF  192 (396)
T ss_pred             EEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHH
Confidence            99999999999999999999999999998777899999999988865      799999999999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++|++|+++||+||+|.++.|++..+..+.......+.....+ ++|+++||||.| .+|+|+||
T Consensus       193 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~~~~GlRiG~  256 (396)
T PRK09147        193 ALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFK-RLVVFHSLSKRSNVPGLRSGF  256 (396)
T ss_pred             HHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccc-cEEEEeccccccCCccceeee
Confidence            9999999999999999999987631233332221222110112 689999999987 67999999

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5e-39  Score=315.12  Aligned_cols=244  Identities=18%  Similarity=0.257  Sum_probs=202.5

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++.++.......+...+.+.+..    +     .++|++++|+|+.                             ..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~g~p~~-----------------------------~~   46 (399)
T PRK07681          5 LATRMKAFQSSIFSELGAYKKEKIAA----G-----HKMIDLSIGNPDM-----------------------------PP   46 (399)
T ss_pred             HhHHHhhcCccHHHHHHHHHHHhhhc----C-----CCeEEeCCCCCCC-----------------------------CC
Confidence            34566666666665555555544332    1     4799999999986                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      ++.+.+++.+.+...   ....|+ ..|.++||+++|+|+.+++|+.+++ ++|++|+|+++++..++.+++. +||+|+
T Consensus        47 ~~~~~~~~~~~~~~~---~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~-~Gd~Vl  121 (399)
T PRK07681         47 ADFVREEMVHTANQK---ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYAN-PGDIIL  121 (399)
T ss_pred             CHHHHHHHHHHHhcc---ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCC-CCCEEE
Confidence            666777777666542   244565 4799999999999999999999998 8999999999999999999994 999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      +++|+|+.|...++.+|++++.++++++++|.+|++++++++.+      ++++|+++|||||||.+++.+++++|+++|
T Consensus       122 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a  195 (399)
T PRK07681        122 VPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFA  195 (399)
T ss_pred             ECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHH
Confidence            99999999999999999999999998777899999999998865      799999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++|++||+||+|.++.|++. ++.++.++..     ..+ ++|+++||||.|+ +|+|+||
T Consensus       196 ~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~-----~~~-~~i~~~S~SK~~~~~GlRiG~  250 (399)
T PRK07681        196 KKHNIIVVHDFAYAEFYFDGN-KPISFLSVPG-----AKE-VGVEINSLSKSYSLAGSRIGY  250 (399)
T ss_pred             HHcCeEEEEeccchhheeCCC-CCCChhhCCC-----Ccc-cEEEEeecccccCCccceeEE
Confidence            999999999999999998764 3555554321     123 5899999999997 8999999

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=1.2e-38  Score=315.44  Aligned_cols=221  Identities=25%  Similarity=0.405  Sum_probs=187.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .+++++++|+|+..+.                          .+|+.+.+++.+.+.+.   ...+|++..|.++||+++
T Consensus        32 ~~~~~~~~G~p~~~~~--------------------------~~p~~~~~a~~~~~~~~---~~~~Y~~~~G~~~LReai   82 (433)
T PRK06855         32 VKITWENIGDPIAKGE--------------------------KIPDWMKEIVAELVMDD---KSYGYCPTKGVLETREFL   82 (433)
T ss_pred             ccccccccCCCcccCC--------------------------CCCHHHHHHHHHHhhcC---CCCCCCCCCCCHHHHHHH
Confidence            4799999999964222                          34666777776666442   367899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH-HHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-ALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+|+.+++|+.+++++|++|+|++++|..++. ++ ++||.|++++|+|+.|.... ...|++++.++++++++|++|++
T Consensus        83 a~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~  160 (433)
T PRK06855         83 AELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL-RREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLD  160 (433)
T ss_pred             HHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc-CCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHH
Confidence            99999999999999999999999999999985 66 59999999999999987653 45689999999987778999999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|+++++.    ..++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++.++.+    
T Consensus       161 ~l~~~~~~----~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~-~~~sl~~~~~----  231 (433)
T PRK06855        161 DLENKVKY----NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK-KTVPLSEVIG----  231 (433)
T ss_pred             HHHHHHhc----CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCCHHHHcC----
Confidence            99998863    11578999999999999999999999999999999999999999999999764 4667766532    


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         +.++|+++||||.|+ +|+|+||
T Consensus       232 ---~~~~I~~~S~SK~~~~pGlRiG~  254 (433)
T PRK06855        232 ---DVPGIALKGISKELPWPGSRCGW  254 (433)
T ss_pred             ---cCCeEEEecCccccCCCcceEEE
Confidence               225799999999996 9999999

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=2.7e-38  Score=309.31  Aligned_cols=249  Identities=21%  Similarity=0.349  Sum_probs=203.6

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      |+++..++......+...+.++...        ...++|++++|+|+.                             .+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~l~~~~p~~-----------------------------~~~   43 (393)
T TIGR03538         1 NPNLSRLQPYPFEKLAALLAGVTPP--------ASKPPIALSIGEPKH-----------------------------PTP   43 (393)
T ss_pred             CchhhhCCccHHHHHHHHHHhhhhh--------cCCCeEEecCCCCCC-----------------------------CCC
Confidence            4556666666666667776655332        114899999999987                             457


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC--CCCC-CEEEcCChHHHHHHHHHHHccCCCCE-
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPN-DIFLTDGASPAVHMMMQLLIRSENDG-  217 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~-  217 (360)
                      +.+.+++.+.+..     ...|++..|.++||+++|+|+.+++|++  ++++ +|++|+|+++++..++++++ ++||+ 
T Consensus        44 ~~~~~a~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~-~~gd~~  117 (393)
T TIGR03538        44 AFVLEALRENLHG-----LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI-NPGQAP  117 (393)
T ss_pred             HHHHHHHHHHhhc-----cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc-CCCCcc
Confidence            7777777766542     5679999999999999999999988876  7885 79999999999999999999 49986 


Q ss_pred             -EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          218 -ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       218 -Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                       |+++.|+|+.|...++..|++++.++++++++|.+|++++++++.+      ++|+|+++|||||||.+++.+++++|+
T Consensus       118 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~  191 (393)
T TIGR03538       118 LVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLI  191 (393)
T ss_pred             eEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHH
Confidence             9999999999999999999999999998777899999999998876      789999999999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++|+++|++||+||+|.++.|++..++.++......++....+ ++|+++||||.| .+|+|+||
T Consensus       192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vi~i~S~SK~~~~~GlRvG~  255 (393)
T TIGR03538       192 ELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFR-RCLVFHSLSKRSNLPGLRSGF  255 (393)
T ss_pred             HHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccc-cEEEEecchhhcCCcccceEE
Confidence            9999999999999999999887522344443332222210112 689999999986 57999998

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=310.31  Aligned_cols=237  Identities=22%  Similarity=0.375  Sum_probs=200.5

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..+....+..+...+    ..          .++|++++|+|+.                             ..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~----~~----------~~~i~l~~G~P~~-----------------------------~~   68 (413)
T PLN00175         32 VAKRLEKFKTTIFTQMSSLA----IK----------HGAINLGQGFPNF-----------------------------DG   68 (413)
T ss_pred             hhHHhhcCCCCHHHHHHHHh----hc----------CCeEecCCCCCCC-----------------------------CC
Confidence            45666666666554433332    11          3799999999997                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      |+.+.+++.+.+.+    ....|++..|.++||+++++++.+++|+.++++ +|++|+|+++|+..++..++ ++||+|+
T Consensus        69 ~~~~~~~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~Vl  143 (413)
T PLN00175         69 PDFVKEAAIQAIRD----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVI  143 (413)
T ss_pred             CHHHHHHHHHHHhc----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC-CCCCEEE
Confidence            67777777777765    256899999999999999999999999999998 79999999999999999998 5999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      +++|+|+.|...++..|++++.+++++++ |.+|+++|++.+.+      ++|+|+++|||||||.+++.+++++|+++|
T Consensus       144 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a  216 (413)
T PLN00175        144 LFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLC  216 (413)
T ss_pred             EeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHH
Confidence            99999999999999999999999997654 89999999998876      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++++||+||+|.++.|++.  +.++.++. .+    .+ ++|+++||||.|+ +|+|+||
T Consensus       217 ~~~~~~ii~De~Y~~l~~~~~--~~s~~~~~-~~----~~-~vi~i~SfSK~~~~~G~RiG~  270 (413)
T PLN00175        217 KENDVLAFTDEVYDKLAFEGD--HISMASLP-GM----YE-RTVTMNSLGKTFSLTGWKIGW  270 (413)
T ss_pred             HHcCcEEEEecccCccccCCc--ccChhhCC-CC----cC-cEEEEecchhhccCcchheee
Confidence            999999999999999998653  55655442 11    12 6899999999998 8999999

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=3.1e-38  Score=310.43  Aligned_cols=221  Identities=23%  Similarity=0.379  Sum_probs=191.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+|++|+|+..+.                         ...|+.+.+++.+.+.+.   ....|++..|.++||+++
T Consensus        32 ~~~i~l~~G~p~~~~~-------------------------~~~p~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~ai   83 (409)
T PLN00143         32 RLAISFGFGDPSCFEC-------------------------FRTTNIAEDAIVEAVRSA---KFNSYAPTGGILPARRAI   83 (409)
T ss_pred             CceeeCCCCCCCCCCC-------------------------CCCCHHHHHHHHHHHhCc---CCCCCCCCCCCHHHHHHH
Confidence            6899999999982100                         045788888888877653   256799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+|+.+++|+++++++|++|+|+++++.+++++++ ++||.|+++.|+|+.|...++..|++++.++++++++|.+|+++
T Consensus        84 a~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  162 (409)
T PLN00143         84 ADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-RPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDA  162 (409)
T ss_pred             HHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-CCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHH
Confidence            99999999999999999999999999999999999 59999999999999999999999999999999766679999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++++++|||||||.+++.+++++|+++|++++++||+||+|.+++|++. ++.++..+..     
T Consensus       163 l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~-----  230 (409)
T PLN00143        163 VEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK-PFVPMGLFAS-----  230 (409)
T ss_pred             HHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC-CCcchhhhcc-----
Confidence            9988765      789999999999999999999999999999999999999999999999763 3445443311     


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        ..++|+++||||.| .+|+|+||
T Consensus       231 --~~~vi~~~SfSK~f~~pGlRvG~  253 (409)
T PLN00143        231 --IVPVITLGSISKRWMIPGWGLGW  253 (409)
T ss_pred             --cCcEEEEccchhhcCCCccceEE
Confidence              12689999999995 67999999

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.7e-38  Score=308.68  Aligned_cols=246  Identities=22%  Similarity=0.300  Sum_probs=201.2

Q ss_pred             hccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHH
Q 018147           66 LKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSI  145 (360)
Q Consensus        66 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~  145 (360)
                      ..+.....+.+...+.++++.    +     .+++++++|+|+.                             ..|+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~l~~g~p~~-----------------------------~~~~~~~   52 (403)
T PRK08636         11 KRLPKYVFAEVNELKMAARRA----G-----EDIIDFSMGNPDG-----------------------------PTPQHII   52 (403)
T ss_pred             HhCCccHHHHHHHHHHHHHhc----C-----CCEEEcCCcCCCC-----------------------------CCCHHHH
Confidence            344444555566666555543    2     4789999999996                             3466677


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC
Q 018147          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ  224 (360)
Q Consensus       146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~  224 (360)
                      +++.+.+...   ....|++..|.++||+++|+|+++++|+.++++ +|++|+|+++++..++++++ ++||+|++++|+
T Consensus        53 ~~~~~~~~~~---~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~  128 (403)
T PRK08636         53 DKLCESAQKP---KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT-NPGDVAIVPDPA  128 (403)
T ss_pred             HHHHHHhcCC---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC-CCCCEEEEcCCC
Confidence            7776655432   367899999999999999999999999999998 79999999999999999999 499999999999


Q ss_pred             chHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc-CCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       225 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      |+.|...++..|++++.++++.+++|++|++.+.+.+++..++ ..++++++++|||||||.+++.+++++|+++|++|+
T Consensus       129 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~  208 (403)
T PRK08636        129 YPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKER  208 (403)
T ss_pred             CcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999875557899998776666544332 247899999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++||+||+|.++.|++. ++.++..+ +.    .++ ++|+++||||.| .+|+|+||
T Consensus       209 ~~II~De~Y~~l~~~~~-~~~~~~~~-~~----~~~-~~i~~~S~SK~~~~~GlRiG~  259 (403)
T PRK08636        209 FYIISDIAYADITFDGY-KTPSILEV-EG----AKD-VAVESYTLSKSYNMAGWRVGF  259 (403)
T ss_pred             cEEEEeccchhhccCCC-CCCChhcC-CC----ccc-cEEEEEecccccCCccceeee
Confidence            99999999999998753 35555543 21    134 578899999999 58999999

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=307.95  Aligned_cols=238  Identities=23%  Similarity=0.315  Sum_probs=205.2

Q ss_pred             hhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCH
Q 018147           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (360)
Q Consensus        63 ~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~  142 (360)
                      +++.++.+....++..++.+.+..     +    +++|+++.|+|.+                             .+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~i~l~~g~~~~-----------------------------~~~~   48 (387)
T PRK08960          7 RRSRDIEPFHVMALLARANELEAA-----G----HDVIHLEIGEPDF-----------------------------TTAE   48 (387)
T ss_pred             hHHHhCCchHHHHHHHHHHHHHhc-----C----CCeEEeCCCCCCC-----------------------------CCCH
Confidence            455566667777777777665443     1    4789999999986                             4578


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcC
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~  222 (360)
                      .+.+++.+.+...    ...|.+..|.+++|+++|+++.+++|+.+++++|++|+|+++++..++.+++ ++||+|++++
T Consensus        49 ~v~~a~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~  123 (387)
T PRK08960         49 PIVAAGQAALAAG----HTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-DPGKHWLLAD  123 (387)
T ss_pred             HHHHHHHHHHhcC----CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-CCCCEEEEcC
Confidence            8888888877642    4579999999999999999999999999999999999999999999999998 5999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.+...++..|.+++.++++++++|.+|++++++++++      +++++++++||||||.+++.+++++|+++|+++
T Consensus       124 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~  197 (387)
T PRK08960        124 PGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRAR  197 (387)
T ss_pred             CCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence            99999999999999999999998777889999999998876      688999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++|+||+|.++.|++.  ..++...        ++ ++|+++||||.|+ +|+|+||
T Consensus       198 ~~~li~De~Y~~~~~~~~--~~~~~~~--------~~-~vi~~~S~SK~~g~~GlRiG~  245 (387)
T PRK08960        198 GGHLVVDEIYHGLTYGVD--AASVLEV--------DD-DAFVLNSFSKYFGMTGWRLGW  245 (387)
T ss_pred             CCEEEEEccccccccCCC--CCChhhc--------cC-CEEEEeecccccCCcccEEEE
Confidence            999999999999988653  4444322        12 6899999999996 8999998

>PLN02187 rooty/superroot1

Probab=100.00  E-value=4.5e-38  Score=313.28  Aligned_cols=221  Identities=24%  Similarity=0.425  Sum_probs=193.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+..+-                         ...|+++.+++.+.+...   ....|++..|.++||+++
T Consensus        66 ~~vi~l~~Gdp~~~p~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lR~ai  117 (462)
T PLN02187         66 KTILPLGHGDPSVYPC-------------------------FRTCIEAEDAVVDVLRSG---KGNSYGPGAGILPARRAV  117 (462)
T ss_pred             CCeEECCCCCCCCCCC-------------------------CCCCHHHHHHHHHHHhCC---CCCCCCCCCChHHHHHHH
Confidence            6899999999996210                         134677888888877653   246799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+|+.+++|+.+++++|++|+|++++|..++.+++ ++||+|++++|+|+.|...++..|++++.+++.++++|++|+++
T Consensus       118 A~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~  196 (462)
T PLN02187        118 ADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEG  196 (462)
T ss_pred             HHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHH
Confidence            99999989999999999999999999999999999 49999999999999999999999999999999776789999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+++|++. ++.++..+..     
T Consensus       197 l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~-~~~s~~~~~~-----  264 (462)
T PLN02187        197 IEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN-PFVSMGKFAS-----  264 (462)
T ss_pred             HHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CceeHHHhcc-----
Confidence            9988865      789999999999999999999999999999999999999999999999764 4556654421     


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        ..++|+++||||.| .+|+|+||
T Consensus       265 --~~~vi~l~SfSK~f~~pGlRiG~  287 (462)
T PLN02187        265 --IVPVLTLAGISKGWVVPGWKIGW  287 (462)
T ss_pred             --CCcEEEEecchhhcCCccceeEE
Confidence              22689999999995 57999999

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=3.8e-38  Score=307.92  Aligned_cols=243  Identities=20%  Similarity=0.255  Sum_probs=200.7

Q ss_pred             hhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCH
Q 018147           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (360)
Q Consensus        63 ~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~  142 (360)
                      +++.++....+..+...+.+....    +     +++|+++.|+|+.                             ..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~~~p~~-----------------------------~~~~   48 (389)
T PRK08068          7 ELLKQLPKQFFASLVAKVNKKVAE----G-----HDVINLGQGNPDQ-----------------------------PTPE   48 (389)
T ss_pred             hHhhhcCccHHHHHHHHHHHHHhc----C-----CCeEEecCCCCCC-----------------------------CCCH
Confidence            445555555555555554443321    1     3689999999986                             3456


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      .+.+++.+.+...   ....|++..|.++||+++|+++.+++|.+++++ +|++|+|+++++..++..++. +||+|+++
T Consensus        49 ~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~-~gd~vlv~  124 (389)
T PRK08068         49 HIVEALQEAAENP---ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMN-PGDTILVP  124 (389)
T ss_pred             HHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCC-CCCEEEEc
Confidence            6777777766542   256899999999999999999998889889998 899999999999999999994 99999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      +|+|+.|...++..|++++.++++++++|.+|++++++.+.+      ++++|+++|||||||.+++.+++++|+++|++
T Consensus       125 ~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~  198 (389)
T PRK08068        125 DPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKK  198 (389)
T ss_pred             CCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999998776789999999998865      68999999999999999999999999999999


Q ss_pred             cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++||+||+|.++.|++. .+.++.....     ..+ ++|+++||||.|+ +|+|+||
T Consensus       199 ~~~~ii~Deay~~~~~~~~-~~~s~~~~~~-----~~~-~~i~~~S~SK~~g~~GlRiG~  251 (389)
T PRK08068        199 HNIGVVHDFAYGAIGFDGQ-KPVSFLQTPG-----AKD-VGIELYTLSKTFNMAGWRVAF  251 (389)
T ss_pred             cCeEEEEehhhhhhccCCC-CCcChhhCCC-----ccC-CEEEEecchhccCCccceeEe
Confidence            9999999999999988753 2445433211     122 5799999999995 8999999

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.6e-38  Score=307.32  Aligned_cols=239  Identities=20%  Similarity=0.332  Sum_probs=201.9

Q ss_pred             chHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHH
Q 018147           74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILD  153 (360)
Q Consensus        74 ~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~  153 (360)
                      .++-+.|..+++.++..+  +| .++|++++|+|+..                            .+|+.+.+++.+.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~-~~~i~l~~g~~~~~----------------------------~p~~~~~~~~~~~~~   67 (405)
T PRK06207         19 QEVRQSAAGLEALLRGEP--LP-GRPVDFSHGDVDAH----------------------------EPTPGAFELFSAGVE   67 (405)
T ss_pred             HHHHhhhhhhhhhhcCCc--CC-CCceecCCcCCCCC----------------------------CCCHHHHHHHHHHHh
Confidence            355566777777765443  23 57889999999841                            346678888777775


Q ss_pred             cCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH
Q 018147          154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI  232 (360)
Q Consensus       154 ~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~  232 (360)
                      ..   ....|++..|.++||+++++++.+.+|+.+++ ++|++|+|+++++..++..++ ++||+|++++|+|+.|...+
T Consensus        68 ~~---~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~  143 (405)
T PRK06207         68 RG---GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLV  143 (405)
T ss_pred             cC---CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHH
Confidence            43   25679999999999999999999999988898 899999999999999999999 59999999999999999999


Q ss_pred             HHcCCeEEEeecC---CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEc
Q 018147          233 ALHGGTLVPYYLD---EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (360)
Q Consensus       233 ~~~g~~~~~v~~~---~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~D  309 (360)
                      +..|++++.++++   .+++|++|+++|++++++      ++++++++|||||||.+++.+++++|+++|+++|++||+|
T Consensus       144 ~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~D  217 (405)
T PRK06207        144 EFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVD  217 (405)
T ss_pred             HHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            9999999999986   334689999999999876      6899999999999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       310 eaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+|.+++|++. ++.++..+ .    ...+ ++|+++||||+|+ +|+|+||
T Consensus       218 e~Y~~~~~~~~-~~~~~~~~-~----~~~~-~vi~i~SfSK~~~lpGlRiG~  262 (405)
T PRK06207        218 QLYSRLLYDGT-SYTHLRAL-P----IDPE-NVITIMGPSKTESLSGYRLGV  262 (405)
T ss_pred             ccccccccCCC-CCCchhcC-C----CCcC-cEEEEecchhhccCcccceEE
Confidence            99999999764 34454433 1    1123 6899999999998 8999999

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=7.3e-38  Score=309.44  Aligned_cols=240  Identities=23%  Similarity=0.383  Sum_probs=201.8

Q ss_pred             chhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHH
Q 018147           71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ  150 (360)
Q Consensus        71 ~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~  150 (360)
                      .+++.+..++.++.+.    .   |..++|++++|+|+..+.                         ...|+++.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~----~---~~~~~i~l~~G~P~~~~~-------------------------~~~~~~~~~a~~~   80 (430)
T PLN00145         33 SIRAVLNRVKACVDAG----G---GPRPVLPLGHGDPSAFPC-------------------------FRTAPEAEDAVAA   80 (430)
T ss_pred             chhhHHHHHHHhhhcc----c---CCCCeeeCCCCCCCCCCC-------------------------CCCCHHHHHHHHH
Confidence            3555555555554422    1   025899999999985321                         1347788888888


Q ss_pred             HHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH
Q 018147          151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA  230 (360)
Q Consensus       151 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~  230 (360)
                      .+...   ....|++..|.+++|+++|+++.+++|.++++++|++|+|+++||.++++.++ ++||+|+++.|+|+.|..
T Consensus        81 al~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~~P~y~~y~~  156 (430)
T PLN00145         81 ALRSG---KYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-QPGANILLPRPGYPLYEA  156 (430)
T ss_pred             HHHcC---cCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCccHHH
Confidence            77653   24579999999999999999999999999999999999999999999999998 599999999999999999


Q ss_pred             HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       231 ~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      .+...|++++.+++.++++|.+|++.+++.+++      ++++++++|||||||.+++.+++++|+++|+++|++||+||
T Consensus       157 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De  230 (430)
T PLN00145        157 RAVFSGLEVRHFDLLPERGWEVDLEGVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADE  230 (430)
T ss_pred             HHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            999999999999987777899999999998876      79999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       311 aY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      +|.+++|++. ++.++..+..       ..++|+++||||.| .+|+|+||
T Consensus       231 ~Y~~~~~~~~-~~~~~~~~~~-------~~~vi~~~S~SK~~~~pG~RlG~  273 (430)
T PLN00145        231 VYDHLTFGSK-PFVPMGVFGE-------VAPVLTLGSISKRWVVPGWRLGW  273 (430)
T ss_pred             cchhhccCCC-Cccchhhhcc-------cCcEEEEeccccccCCCCeeEEE
Confidence            9999999764 4566544321       22689999999995 67999999

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.9e-38  Score=305.80  Aligned_cols=242  Identities=21%  Similarity=0.320  Sum_probs=199.2

Q ss_pred             hhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHH
Q 018147           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (360)
Q Consensus        64 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~  143 (360)
                      ++.++.....+.+...+.+.++.     +    +++|++++|+|..                             .+|..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~i~l~~g~p~~-----------------------------~~p~~   52 (394)
T PRK05942         11 RLQALPPYVFARLDELKARAREQ-----G----LDLIDLGMGNPDG-----------------------------AAPQP   52 (394)
T ss_pred             hhccCCCcHHHHHHHHHHHHHhc-----C----CCeEEcCCCCCCC-----------------------------CCCHH
Confidence            34444444444444444444432     1    4689999999986                             34666


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHccCCCCEEEEcC
Q 018147          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~  222 (360)
                      +++++.+.+...   ....|++..|.++||+++|+|+.+++|+.+++++ |++|+|+++++..++.+++ ++||+|++++
T Consensus        53 ~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~-~~gd~Vlv~~  128 (394)
T PRK05942         53 VIEAAIAALADP---QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV-NPGDVVLVPS  128 (394)
T ss_pred             HHHHHHHHHhCC---CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC-CCCCEEEEcC
Confidence            777776666432   2578999999999999999999998898899985 8999999999999999998 4999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.+...+...|++++.++++.+++|.+|++++++.+.+      ++|+|+++|||||||.+++.+++++|+++|+++
T Consensus       129 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~  202 (394)
T PRK05942        129 PAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKY  202 (394)
T ss_pred             CCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc
Confidence            99999999999999999999998777799999999998875      799999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++||+||+|.++.|++. .+.++..+. .    .++ ++|+++||||.|+ +|+|+||
T Consensus       203 ~~~iI~De~y~~~~~~~~-~~~~~~~~~-~----~~~-~~i~~~SfSK~~~~~GlRiG~  254 (394)
T PRK05942        203 EIMLVHDLCYAELAFDGY-QPTSLLEIP-G----AKD-IGVEFHTLSKTYNMAGWRVGF  254 (394)
T ss_pred             CeEEEEeccchhhccCCC-CCCChhhCC-C----ccc-cEEEEecchhccCChhhheee
Confidence            999999999999998654 344544331 1    123 5799999999995 8999999

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.1e-38  Score=305.10  Aligned_cols=216  Identities=20%  Similarity=0.365  Sum_probs=188.4

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+.                             ..++.+++++.+.+..    ....|++..|.++||+++
T Consensus        29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i   75 (384)
T PRK06348         29 PDIIDLSLGDPDL-----------------------------ITDESIINAAFEDAKK----GHTRYTDSGGDVELIEEI   75 (384)
T ss_pred             CCcEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHH
Confidence            3689999999986                             3356677766554433    256899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++.+++|+.+++++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...++.+|++++.+++.++++|.+|+++
T Consensus        76 a~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  154 (384)
T PRK06348         76 IKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKK  154 (384)
T ss_pred             HHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHH
Confidence            99999999999999999999999999999999998 49999999999999999999999999999998766678999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.|++.  +.++.+.. ++   
T Consensus       155 l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~---  222 (384)
T PRK06348        155 LEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED--FVPMATLA-GM---  222 (384)
T ss_pred             HHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC--ccchhhcC-CC---
Confidence            9998875      789999999999999999999999999999999999999999999998653  44544432 11   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ++ ++|+++||||+|+ +|+|+||
T Consensus       223 -~~-~vi~~~SfSK~~~l~GlRiG~  245 (384)
T PRK06348        223 -PE-RTITFGSFSKDFAMTGWRIGY  245 (384)
T ss_pred             -cC-cEEEEecchhccCCcccccee
Confidence             23 6899999999998 8999999

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=9.4e-38  Score=304.42  Aligned_cols=242  Identities=21%  Similarity=0.325  Sum_probs=199.4

Q ss_pred             hhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHH
Q 018147           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (360)
Q Consensus        64 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~  143 (360)
                      ++.++.++.+..+...+.++++.     +    ++++++++|+|+.                             ..|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~l~~~~~~~-----------------------------~~~~~   46 (383)
T TIGR03540         5 RIENLPPYLFAEIDKKKAEKKAE-----G----VDVISLGIGDPDL-----------------------------PTPKH   46 (383)
T ss_pred             hhccCChhHHHHHHHHHHHHHhc-----C----CCeEEeCCCCCCC-----------------------------CCCHH
Confidence            34444444443444445444432     1    4899999999986                             34677


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcC
Q 018147          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~  222 (360)
                      +.+++.+.+...   ....|++..|.++||+++|+|+.+++|++++++ +|++|+|+++++..++..++. +||+|+++.
T Consensus        47 ~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~-~gd~vlv~~  122 (383)
T TIGR03540        47 IVEALCKAAENP---ENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVN-PGDIVLVPD  122 (383)
T ss_pred             HHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCC-CCCEEEEeC
Confidence            788877766542   256899999999999999999999889888887 699999999999999999994 999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.|...++..|++++.++++++++|.+|++++++++.+      ++++|+++|||||||.+++.+++++|+++|+++
T Consensus       123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~  196 (383)
T TIGR03540       123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY  196 (383)
T ss_pred             CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc
Confidence            99999999999999999999998776788999999988865      799999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++||+||+|.++.|++. .+.++..+.. .    .+ ++|+++||||.|+ +|+|+||
T Consensus       197 ~~~ii~De~y~~l~~~~~-~~~~~~~~~~-~----~~-~~i~~~SfSK~~g~~GlRiG~  248 (383)
T TIGR03540       197 NIIVCHDNAYSEITFDGY-KAPSFLEVDG-A----KD-VGIEFHSLSKTYNMTGWRIGM  248 (383)
T ss_pred             CEEEEEecchhhhccCCC-CCcCcccCCC-c----cc-CEEEEEecccccCCccceeeE
Confidence            999999999999988653 3455544311 1    12 5799999999995 8999999

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-37  Score=303.66  Aligned_cols=244  Identities=23%  Similarity=0.328  Sum_probs=203.3

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++++..+.....+.+...+.++++.     +    .++|+++.|+|+.                             ..|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~i~l~~~~~~~-----------------------------~~~   46 (385)
T PRK09276          5 ADRIKNLPPYLFAEIDKKKAEKIAR-----G----VDVISLGIGDPDL-----------------------------PTP   46 (385)
T ss_pred             hhHhhhCCccHHHHHHHHHHHHHhc-----C----CCEEEecCCCCCC-----------------------------CCC
Confidence            3445555666566666666555544     1    4789999999986                             346


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      +.+.+++.+.+...   ....|++..|.++||+++++|+.+++|..++++ +|++|+|+++++..+++.++. +||+|++
T Consensus        47 ~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~-~gd~Vl~  122 (385)
T PRK09276         47 DHIIEAMCKAVEDP---ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVN-PGDVVLV  122 (385)
T ss_pred             HHHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC-CCCEEEE
Confidence            77777777777642   256899999999999999999999889888887 599999999999999999994 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|+.|...++..|++++.++++.+++|.+|++++++.+.+      ++++|+++|||||||.+++.+++++|+++|+
T Consensus       123 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~  196 (385)
T PRK09276        123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAK  196 (385)
T ss_pred             cCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999998766788999999888765      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|++||+||+|.++.|++. .+.++..... .    .+ ++|+++||||.|+ +|+|+||
T Consensus       197 ~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-~----~~-~~i~~~S~SK~~g~~GlRiG~  250 (385)
T PRK09276        197 KYDIIVCHDAAYSEIAYDGY-KPPSFLEVPG-A----KD-VGIEFHSLSKTYNMTGWRIGF  250 (385)
T ss_pred             HCCcEEEEecchhheecCCC-CCCChhccCC-C----cC-CEEEEecchhhcCCcchhhee
Confidence            99999999999999988754 3455544311 1    12 5799999999995 8999999

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=287.58  Aligned_cols=221  Identities=26%  Similarity=0.394  Sum_probs=202.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|.+++|+|...+-                         ....+.+.+++.+.++..   ...+|+|+.|+...|+++
T Consensus        61 k~iipl~~GDPsv~~~-------------------------~~ts~~a~~Av~~al~Sg---k~N~Yaps~G~~~AR~AV  112 (447)
T KOG0259|consen   61 KPILPLGHGDPSVYPC-------------------------FRTSQEAEQAVVDALRSG---KGNGYAPSVGILPARRAV  112 (447)
T ss_pred             ceeccCCCCCCCcccc-------------------------ccCCHHHHHHHHHHHhcC---CCCCcCCccccHHHHHHH
Confidence            3899999999997432                         134677888888888875   377999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+|+++.....+++++|++|+|.++||..++.+|.+ ||..|++|.|+|+.|...+...|.+++.|.+-++.+|.+|++.
T Consensus       113 AeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~-p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~  191 (447)
T KOG0259|consen  113 AEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN-PGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDG  191 (447)
T ss_pred             HHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC-CCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHH
Confidence            999988887789999999999999999999999994 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      ++..+++      +|.+++++||+||+|.+++.+.+++|+++|++++++||.||+|.+++|++. +|.++.++..     
T Consensus       192 veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~-pfvpmg~fss-----  259 (447)
T KOG0259|consen  192 VEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK-PFVPMGKFSS-----  259 (447)
T ss_pred             HHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC-Cccchhhccc-----
Confidence            9999988      899999999999999999999999999999999999999999999999986 6888877743     


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        .+.+|.++|+||.| -+|+|+||
T Consensus       260 --iVPVitlggisKrW~VPGWRlGW  282 (447)
T KOG0259|consen  260 --IVPVITLGGISKRWIVPGWRLGW  282 (447)
T ss_pred             --cCceEeecccccccccCCceeee
Confidence              45799999999986 68999999

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=2.9e-37  Score=303.12  Aligned_cols=244  Identities=32%  Similarity=0.576  Sum_probs=205.9

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      |+++..+++..+..+..++++++..     +    .++|++++|+|...+.                          ..|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~i~l~~g~p~~~~~--------------------------~~~   51 (404)
T PRK09265          7 SSKLENVCYDIRGPVLKEAKRLEEE-----G----HKILKLNIGNPAPFGF--------------------------EAP   51 (404)
T ss_pred             hHHHHhcCcchhHHHHHHHHHHHHc-----C----CCeEEecCCCCCcCCC--------------------------CCC
Confidence            4566778888888788887776443     1    4899999999974222                          246


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      +.+++++.+.+..     ...|++..|.++||+++|+++.++++.++++++|++|+|+++++..++++++ ++||+|+++
T Consensus        52 ~~i~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~  125 (404)
T PRK09265         52 DEILRDVIRNLPT-----AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-NNGDEVLVP  125 (404)
T ss_pred             HHHHHHHHHHhhc-----CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC-CCCCEEEEe
Confidence            7787777765542     4579999999999999999998765557899999999999999999999998 499999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      +|+|+.|...++..|++++.++++.+++|.+|++++++++.+      ++++|+++|||||||.+++.+++++|+++|++
T Consensus       126 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~  199 (404)
T PRK09265        126 APDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQ  199 (404)
T ss_pred             CCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999887666788999999998865      78999999999999999999999999999999


Q ss_pred             cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      +|++||+||+|.++.|++. ++.++....       ++.++|+++||||.| .+|+|+||
T Consensus       200 ~~~~ii~De~y~~~~~~~~-~~~~~~~~~-------~~~~vi~~~S~SK~~~~pGlRiG~  251 (404)
T PRK09265        200 HNLIIFADEIYDKILYDGA-VHISIASLA-------PDLLCVTFNGLSKAYRVAGFRVGW  251 (404)
T ss_pred             CCCEEEEehhhhhccCCCC-CcCCHHHcC-------CCceEEEEecchhhccCcccceEE
Confidence            9999999999999998764 355655432       233689999999999 68999998

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-37  Score=302.86  Aligned_cols=217  Identities=23%  Similarity=0.361  Sum_probs=187.9

Q ss_pred             cccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           96 FDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        96 ~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      ..++|+|++|+|..                             ..++.+++++.+.+...   ....|++ .|.++||++
T Consensus        43 ~~~~i~L~~g~p~~-----------------------------~~~~~~~~~l~~~~~~~---~~~~Y~~-~G~~~lr~a   89 (410)
T PRK06290         43 DMELIDMGVGEPDE-----------------------------MADESVVEVLCEEAKKP---ENRGYAD-NGIQEFKEA   89 (410)
T ss_pred             CCCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CCCCCCC-CCcHHHHHH
Confidence            35799999999987                             34667777776655432   2456875 899999999


Q ss_pred             HHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCC
Q 018147          176 IAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE  253 (360)
Q Consensus       176 ia~~l~~~~g~~-~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  253 (360)
                      +|+++.+++|+. ++++ +|++|+|++++|..++++++. +||.|+++.|+|+.|...++..|++++.++++++++|.+|
T Consensus        90 ia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~-~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d  168 (410)
T PRK06290         90 AARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFIN-PGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPD  168 (410)
T ss_pred             HHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCC-CCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCC
Confidence            999999988987 9997 799999999999999999994 9999999999999999999999999999999987788999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       254 ~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      ++++++++.+      ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++.  +.++.....  
T Consensus       169 ~~~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~--~~s~~~~~~--  238 (410)
T PRK06290        169 LDSIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK--PLSFLSVPG--  238 (410)
T ss_pred             HHHHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC--CcChhcCCC--
Confidence            9999988865      789999999999999999999999999999999999999999999988653  445544311  


Q ss_pred             CCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          334 GYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         ..+ ++|+++||||.|+ +|+|+||
T Consensus       239 ---~~~-~~I~i~SfSK~~g~~GlRiG~  262 (410)
T PRK06290        239 ---AKE-VGVEIHSLSKAYNMTGWRLAF  262 (410)
T ss_pred             ---ccc-cEEEEeechhhcCCchhheEe
Confidence               123 5799999999995 8999998

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=3.8e-37  Score=302.74  Aligned_cols=221  Identities=22%  Similarity=0.379  Sum_probs=191.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+|++|+|+....                         ..+|+.+++++.+.+...   ....|++..|.+++|+++
T Consensus        31 ~~~i~l~~G~p~~~~~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~i   82 (409)
T PLN02656         31 KRVISLGMGDPTAYSC-------------------------FHTTHVAQEAVVDALQSN---KFNGYAPTVGLPQARRAI   82 (409)
T ss_pred             CeeeecCCCCCCcCCC-------------------------CCCCHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHH
Confidence            5899999999984110                         134777888888777653   256899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+.+|+.+++++|++|+|+++++..++.+++ ++||+|++++|+|+.|...++..|++++.++++++++|.+|+++
T Consensus        83 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~  161 (409)
T PLN02656         83 AEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-RPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDA  161 (409)
T ss_pred             HHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-CCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHH
Confidence            99999989999999999999999999999999998 59999999999999999999999999999999766678999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. .+.++..+.      
T Consensus       162 l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~------  228 (409)
T PLN02656        162 VEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN-PFVPMGVFG------  228 (409)
T ss_pred             HHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CcccHHHhc------
Confidence            9988866      789999999999999999999999999999999999999999999999764 355554431      


Q ss_pred             CCCceEEEEeccCcC-ccccccccC
Q 018147          337 EKDISLVSFQSVSKG-RYFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~-~~g~~RvGw  360 (360)
                       ...++|+++||||. ..+|+|+||
T Consensus       229 -~~~~vi~~~SfSK~f~~pGlRiG~  252 (409)
T PLN02656        229 -SIVPVLTLGSLSKRWIVPGWRLGW  252 (409)
T ss_pred             -ccCcEEEEcccchhccCcceeEEE
Confidence             11268999999998 567999998

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=3.2e-37  Score=303.32  Aligned_cols=245  Identities=24%  Similarity=0.344  Sum_probs=199.1

Q ss_pred             cccChhhhcccc-chhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccC
Q 018147           59 DSLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (360)
Q Consensus        59 ~~~~~~~~~~~~-~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~  137 (360)
                      ..||.++.++.. ..+.++..++.+.+++-       +.++++++++|+|+.                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~~----------------------------   46 (409)
T PRK07590          2 AKINENYLKLKAGYLFPEIARRVNAFREAN-------PEAKIIRLGIGDVTQ----------------------------   46 (409)
T ss_pred             cccccccCccCCcchHHHHHHHHHHHhhhc-------CCCceEEecCcCCCC----------------------------
Confidence            456777776654 45666777777776541       225799999999997                            


Q ss_pred             CCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          138 GLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                       .+|+.+.+++.+.+.+... .....|++..|.++||+++|+++.+.+|+++++++|++|+|+++++..++ .++ ++||
T Consensus        47 -~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~-~~gd  123 (409)
T PRK07590         47 -PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF-GPDN  123 (409)
T ss_pred             -CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc-CCCC
Confidence             4577788888877765321 13578999999999999999999988999999999999999999999875 455 4999


Q ss_pred             EEEEcCCCchHHHHHHHHcCCe-----------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          217 GILCPIPQYPLYSASIALHGGT-----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      +|++++|+|+.|...++..|.+           ++.++++++++|.+|.++      +      ++|+|+++|||||||.
T Consensus       124 ~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~------~~k~i~l~nP~NPTG~  191 (409)
T PRK07590        124 TIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E------KVDIIYLCFPNNPTGT  191 (409)
T ss_pred             EEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c------CceEEEEeCCCCCcCC
Confidence            9999999999999999999987           899999866667666432      2      7999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++.+++++|+++|+++|++||+||+|.++.+++. .+.++..+ +.    ..+ ++|+++||||.|+ +|+|+||
T Consensus       192 ~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~-~~----~~~-~vi~~~SfSK~~~~pGlRiG~  260 (409)
T PRK07590        192 VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS-LPHSIYEI-EG----ARE-CAIEFRSFSKTAGFTGTRCAY  260 (409)
T ss_pred             cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC-CCcchhhC-CC----ccc-ceEEEecCccccCCcCceeEE
Confidence            99999999999999999999999999999988653 23444433 11    123 6899999999996 9999998

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=8.4e-37  Score=298.28  Aligned_cols=238  Identities=27%  Similarity=0.360  Sum_probs=201.4

Q ss_pred             hhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCH
Q 018147           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (360)
Q Consensus        63 ~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~  142 (360)
                      +++.+.+...+.++...+.++++.    .     ++++++++|+|+.                             ..|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~~~~~~-----------------------------~~~~   46 (388)
T PRK07337          5 ARVDAIEPFYVMELAKEAQALERA----G-----RDIIHMGIGEPDF-----------------------------TAPE   46 (388)
T ss_pred             hHhHhcCchHHHHHHHHHHHHHhc----C-----CCEEEeCCcCCCC-----------------------------CCCH
Confidence            445555555555566666555432    1     4799999999986                             3467


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcC
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~  222 (360)
                      .+.+++.+.+.+    ....|++..|.++||+++|+|+.+++|+.+++++|++|+|+++|+..++..++ ++||+|++++
T Consensus        47 ~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~  121 (388)
T PRK07337         47 PVVEAAARALRR----GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV-ERGDEVLMPD  121 (388)
T ss_pred             HHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc-CCCCEEEEeC
Confidence            778877777654    25679999999999999999999999999999999999999999999999998 4999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.+...++..|++++.++++++++|.+|++++++.+++      ++++|++++||||||.+++.+++++|+++|+++
T Consensus       122 p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~  195 (388)
T PRK07337        122 PSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR  195 (388)
T ss_pred             CCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC
Confidence            99999999999999999999998777899999999998876      789999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++|+||+|.++.|++.  +.++...        .+ ++|+++||||.|+ +|+|+||
T Consensus       196 ~~~ii~De~y~~~~~~~~--~~~~~~~--------~~-~vi~~~S~SK~~~~~G~RiG~  243 (388)
T PRK07337        196 GGFTIVDEIYQGLSYDAA--PVSALSL--------GD-DVITINSFSKYFNMTGWRLGW  243 (388)
T ss_pred             CCEEEEeccccccccCCC--CcChhhc--------cC-CEEEEEechhhcCCchhheee
Confidence            999999999999888653  3343321        12 5899999999995 8999999

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.1e-36  Score=298.99  Aligned_cols=241  Identities=24%  Similarity=0.329  Sum_probs=193.5

Q ss_pred             hhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHH
Q 018147           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (360)
Q Consensus        65 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v  144 (360)
                      +.+++..+...+...+.++++.    +     +++|+++.|+|+.                             ..|+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~~~p~~-----------------------------~~~~~~   48 (405)
T PRK09148          7 IRRLPPYVFEQVNRLKAAARAA----G-----ADIIDLGMGNPDL-----------------------------PTPQHI   48 (405)
T ss_pred             hhcCCccHHHHHHHHHHHHHhc----C-----CCeEEcCCCCCCC-----------------------------CCCHHH
Confidence            3444555555554454444443    1     4789999999986                             447778


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCC
Q 018147          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (360)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P  223 (360)
                      ++++.+.+...   ....|++..|.++||+++|+++.+++|+.++++ +|++|+|++++|..++..++ ++||+|++++|
T Consensus        49 ~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vl~~~P  124 (405)
T PRK09148         49 VDKLCETAQDP---RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-APGDVILCPNP  124 (405)
T ss_pred             HHHHHHHHcCc---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-CCCCEEEEcCC
Confidence            88877665432   357899999999999999999998889889998 89999999999999999999 49999999999


Q ss_pred             CchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       224 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      +|+.|...++..|++++.++++.++.|..+++++.+...+      +++++++++||||||.+++.+++++|+++|+++|
T Consensus       125 ~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~------~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~  198 (405)
T PRK09148        125 SYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIP------KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHD  198 (405)
T ss_pred             CCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999998765554444443332222      6889999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++||+||+|.++.|++. ++.++... +    ..++ ++|+++||||.|+ +|+|+||
T Consensus       199 ~~ii~De~Y~~~~~~~~-~~~s~~~~-~----~~~~-~~i~~~SfSK~~~~pGlR~G~  249 (405)
T PRK09148        199 IIILSDLAYSEIYFDGN-PPPSVLQV-P----GAKD-VTVEFTSMSKTFSMAGWRMGF  249 (405)
T ss_pred             eEEEEeccchhhhcCCC-CCCChhhC-C----CccC-cEEEEeccccccCCcchheee
Confidence            99999999999988763 35555443 1    1134 5789999999998 8999999

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=295.89  Aligned_cols=215  Identities=22%  Similarity=0.364  Sum_probs=187.7

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|++++|+|+.                             ..|+.+++.+.+.+.+    ....|++..|.++||++++
T Consensus        27 ~~i~l~~g~p~~-----------------------------~~p~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia   73 (387)
T PRK08912         27 GAINLGQGFPDD-----------------------------PGPEDVRRAAADALLD----GSNQYPPMMGLPELRQAVA   73 (387)
T ss_pred             CeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHH
Confidence            789999999986                             3467788777766554    2567999999999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      +++.+.+|+.++++ +|++|+|+++++..++..++. +||+|+++.|+|+.|...++.+|++++.++++++ +|++|+++
T Consensus        74 ~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~  151 (387)
T PRK08912         74 AHYARFQGLDLDPETEVMVTSGATEALAAALLALVE-PGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPP-HWRLPRAA  151 (387)
T ss_pred             HHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcC-CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cCcCCHHH
Confidence            99998889999998 999999999999999999984 9999999999999999999999999999998643 57999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+.+      ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. .+.++... .++   
T Consensus       152 l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~---  220 (387)
T PRK08912        152 LAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR-RHIPLMTL-PGM---  220 (387)
T ss_pred             HHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC-CCcChhhC-CCc---
Confidence            9998865      789999999999999999999999999999999999999999999998763 35555433 111   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ ++|+++||||.|+ +|+|+||
T Consensus       221 -~~-~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK08912        221 -RE-RTVKIGSAGKIFSLTGWKVGF  243 (387)
T ss_pred             -cC-ceEEEeechhhccCcCceeEE
Confidence             23 6899999999998 8999998

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=5.7e-37  Score=300.31  Aligned_cols=207  Identities=19%  Similarity=0.156  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHcc-CCCCEE
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGI  218 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l~~-~~gd~V  218 (360)
                      +.+.+++.+.+++.   ....|++..|.++||+++++|+.+.++..+++++|  ++|+|+++|+.++++.+.. ++||+|
T Consensus        47 ~~l~~a~~~~~~~~---~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~V  123 (396)
T PRK09257         47 RAVKKAEARLLETE---TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKV  123 (396)
T ss_pred             HHHHHHHHHhcccc---cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeE
Confidence            45555555544332   25679999999999999999998776666789987  9999999999999876631 599999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++++|+|+.|...++..|++++.+++.++++|++|++.++++++..   ..+.+++++++||||||.+++.+++++|+++
T Consensus       124 lv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~  200 (396)
T PRK09257        124 WVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAEL  200 (396)
T ss_pred             EECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999854445899999999988642   1134556668999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      |++|+++||+||+|.++.|+...++.++..+.. .    .+ ++|+++||||.|+. |+|+||
T Consensus       201 a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~-~----~~-~vi~i~SfSK~~~~~GlRiG~  257 (396)
T PRK09257        201 LKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA-A----GL-ELLVASSFSKNFGLYGERVGA  257 (396)
T ss_pred             HHhCCcEEEEeccccccccchHHHHHHHHHHHh-c----CC-cEEEEEEcCCcCcccccccee
Confidence            999999999999999988752222344443321 1    12 58999999999995 999999

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.1e-36  Score=295.69  Aligned_cols=218  Identities=22%  Similarity=0.357  Sum_probs=191.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|.|..                             ..++.+.+.+.+.+..    ....|++..|.++||+++
T Consensus        33 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i   79 (402)
T PRK06107         33 RSIVDLTVGEPDF-----------------------------DTPDHIKQAAVAAIER----GETKYTLVNGTPALRKAI   79 (402)
T ss_pred             CCEEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHH
Confidence            4799999999986                             3467777777777764    256799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+++|..+++++|++|+|+++|+..++..++ ++||+|++++|+|..|...+...++.++.++++.+++|.+|+++
T Consensus        80 a~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~  158 (402)
T PRK06107         80 IAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEA  158 (402)
T ss_pred             HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHH
Confidence            99999988998999999999999999999999888 49999999999999999999999999999988766678899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc-CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~-~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +++++++      ++++|++++|+||||.+++.+++++|+++|+++ ++++|+||+|.++.|++. ++.++.+..+++  
T Consensus       159 l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~-~~~~~~~~~~~~--  229 (402)
T PRK06107        159 LEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE-PTPHLLAAAPEL--  229 (402)
T ss_pred             HHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC-CCCCHHHhCcCc--
Confidence            9998865      789999999999999999999999999999998 999999999999988764 466666553322  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||.|+ +|+|+||
T Consensus       230 --~~-~vi~~~S~SK~~~~pGlRiG~  252 (402)
T PRK06107        230 --RD-RVLVTNGVSKTYAMTGWRIGY  252 (402)
T ss_pred             --cC-CEEEEeccchhhcCcccceee
Confidence              22 6899999999997 8999999

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.4e-37  Score=299.87  Aligned_cols=192  Identities=16%  Similarity=0.147  Sum_probs=161.6

Q ss_pred             CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HHccCCCCEEEEcCCCchHHHHHHH
Q 018147          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSENDGILCPIPQYPLYSASIA  233 (360)
Q Consensus       159 ~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~--~t~Ga~~al~~~~~---~l~~~~gd~Vlv~~P~y~~~~~~~~  233 (360)
                      ...+|++..|.++||+++|+|+.+..+..+++++|+  .|.|+++++..++.   .++ ++||+|++++|+|+.|...++
T Consensus        64 ~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~~  142 (404)
T PTZ00376         64 LDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIFK  142 (404)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHH
Confidence            357899999999999999999977766678999998  59999999988875   566 599999999999999999999


Q ss_pred             HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+|++++.+++.++++|++|++.++++++..   .++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.
T Consensus       143 ~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~  219 (404)
T PTZ00376        143 SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ  219 (404)
T ss_pred             HcCCceeeccccCcccCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhc
Confidence            9999999999965556899999999998642   1135677778999999999999999999999999999999999999


Q ss_pred             CCccCCC-CCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          314 ENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       314 ~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++.|++. .++.++..+.. .    .+ ++|+++||||.|+ +|+|+||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~-~----~~-~vi~i~SfSK~~~~~GlRvG~  262 (404)
T PTZ00376        220 GFASGDLDKDAYAIRLFAE-R----GV-EFLVAQSFSKNMGLYGERIGA  262 (404)
T ss_pred             CccCCCHHHHHHHHHHHHh-c----CC-cEEEEEeCCCcccccccccce
Confidence            9998641 11223333221 1    22 5899999999999 8999999

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-36  Score=291.26  Aligned_cols=217  Identities=21%  Similarity=0.234  Sum_probs=180.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|+|.+                             ..|+.+.+++.+...     ....|++..|.++||+++
T Consensus        24 ~~~i~l~~~~p~~-----------------------------~~~~~~~~a~~~~~~-----~~~~Y~~~~G~~~lr~ai   69 (374)
T PRK05839         24 YKGLDLTIGEPQF-----------------------------ETPKFIQDALKNNAH-----LLNKYPKSAGEESLREAQ   69 (374)
T ss_pred             CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHhh-----ccCCCCCCCCCHHHHHHH
Confidence            4899999999986                             346666666655443     256799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+++++++|+.+++++|++|+|+++++..++..++. .+||.|+++.|+|+.|...++..|++++.++++++++|.+|++
T Consensus        70 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~  149 (374)
T PRK05839         70 RGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLN  149 (374)
T ss_pred             HHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcc
Confidence            999999999999999999999999999999888752 3799999999999999999999999999999987777888866


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC-
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG-  334 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~-  334 (360)
                      +.+  + +      ++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++  ++.++........ 
T Consensus       150 ~~~--~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~--~~~s~~~~~~~~~~  218 (374)
T PRK05839        150 EKE--L-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT--PPPSLLEASILVGN  218 (374)
T ss_pred             hhh--h-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC--CCCCHhhhhcccCc
Confidence            542  2 2      68999999999999999999999999999999999999999999976543  3555544321100 


Q ss_pred             CCCCCceEEEEeccCcCc-cccccccC
Q 018147          335 YGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ..+ + ++|+++||||.| .+|+|+||
T Consensus       219 ~~~-~-~vi~~~SfSK~~~~~GlRiG~  243 (374)
T PRK05839        219 ESF-K-NVLVINSISKRSSAPGLRSGF  243 (374)
T ss_pred             ccc-C-cEEEEeccccccCCccceeEE
Confidence            112 2 689999999997 57999999

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=3.3e-36  Score=296.43  Aligned_cols=221  Identities=22%  Similarity=0.388  Sum_probs=188.9

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|+|+...                 +        ..+|+.+.+++.+.+...   ....|++..|.++||+++
T Consensus        33 ~~~i~l~~g~p~~~~-----------------~--------~~p~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~Lr~ai   84 (412)
T PTZ00433         33 KSIIKLSVGDPTLDG-----------------N--------LLTPAIQTKALVEAVDSQ---ECNGYPPTVGSPEAREAV   84 (412)
T ss_pred             CCeeecCCcCCCCcC-----------------C--------CCCCHHHHHHHHHHhhcC---CCCCCCCCCCcHHHHHHH
Confidence            489999999998410                 0        023666777777666642   357899999999999999


Q ss_pred             HHHHHhhc------CCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCc
Q 018147          177 AAGIEARD------GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW  250 (360)
Q Consensus       177 a~~l~~~~------g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  250 (360)
                      |+++.+++      |..+++++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...++..|++++.++++++++|
T Consensus        85 a~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~  163 (412)
T PTZ00433         85 ATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDW  163 (412)
T ss_pred             HHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccC
Confidence            99998765      467899999999999999999999998 49999999999999999999999999999999877789


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       251 ~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                      ++|+++|++++++      ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.+++|++. .+.++..+.
T Consensus       164 ~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~  236 (412)
T PTZ00433        164 EADLDEIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA-TFTSVADFD  236 (412)
T ss_pred             cCCHHHHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC-Cccchhhcc
Confidence            9999999988876      789999999999999999999999999999999999999999999998764 345554442


Q ss_pred             HhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          331 RSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      .       +.++|+++||||.| .+|+|+||
T Consensus       237 ~-------~~~~i~~~SfSK~~~~pGlRlG~  260 (412)
T PTZ00433        237 T-------TVPRVILGGTAKNLVVPGWRLGW  260 (412)
T ss_pred             C-------CCceEEEccchhhcCCCCeeEEE
Confidence            1       22579999999999 68999999

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=6.8e-36  Score=291.54  Aligned_cols=216  Identities=21%  Similarity=0.360  Sum_probs=186.4

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|..                             .+++.+.+++.+.+..    ....|++..|.++||+++
T Consensus        29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i   75 (384)
T PRK12414         29 HDALNLSQGAPNF-----------------------------APDPALVEGVARAMRD----GHNQYAPMAGIAALREAL   75 (384)
T ss_pred             CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHHh----CCCCcCCCCCcHHHHHHH
Confidence            3789999999986                             3467777777766654    246799999999999999


Q ss_pred             HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ++++++++|..+++ ++|++|+|+++++..++++++ ++||+|+++.|+|..|...++.+|++++.++++++ +|.+|++
T Consensus        76 a~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~  153 (384)
T PRK12414         76 AEKTERLYGARYDPASEVTVIASASEGLYAAISALV-HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPE-DFRVNWD  153 (384)
T ss_pred             HHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCcc-ccccCHH
Confidence            99999988987776 689999999999999999998 59999999999999999999999999999998754 4789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .|++++++      ++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. ++.++.+. +.+  
T Consensus       154 ~l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~-~~~--  223 (384)
T PRK12414        154 EVAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA-RHHSMARH-REL--  223 (384)
T ss_pred             HHHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC-CccCcccC-cCc--
Confidence            99998865      799999999999999999999999999999999999999999999999764 34444332 111  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||.|+ +|+|+||
T Consensus       224 --~~-~~i~~~SfSK~~~~pGlRiG~  246 (384)
T PRK12414        224 --AE-RSVIVSSFGKSYHVTGWRVGY  246 (384)
T ss_pred             --cC-cEEEEecccccccCccceEEE
Confidence              22 6899999999996 8999999

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.3e-36  Score=300.39  Aligned_cols=198  Identities=23%  Similarity=0.390  Sum_probs=172.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-HcC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~g  236 (360)
                      ...|++..|.++||+++|+|+.+++|..  +++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+. ..|
T Consensus        79 l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~~~~g  157 (468)
T PLN02450         79 LALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLKWRTG  157 (468)
T ss_pred             hhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHhhcCC
Confidence            4569999999999999999999887744  789999999999999999999999 599999999999999988888 589


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++++.++++++++|.+|+++++++++++.+++.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.
T Consensus       158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~  237 (468)
T PLN02450        158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV  237 (468)
T ss_pred             cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence            99999999877789999999999998766666789999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHhh---CCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          317 YVPEKKFHSFKKVSRSM---GYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~---~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++. ++.++.+.....   +....+ ++++++||||.|+ +|+|+||
T Consensus       238 f~~~-~~~s~l~~~~~~~~~~~~~~~-~vi~l~S~SK~~~l~GlRiG~  283 (468)
T PLN02450        238 FDSP-GFVSVMEVLKDRKLENTDVSN-RVHIVYSLSKDLGLPGFRVGA  283 (468)
T ss_pred             cCCC-CcccHHHHhhhcccccCCCCC-cEEEEEeccccCCCCCccEEE
Confidence            9764 466766553211   000123 6999999999997 9999998

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=8.2e-36  Score=290.26  Aligned_cols=215  Identities=26%  Similarity=0.454  Sum_probs=187.0

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|+|+.                             ..++.+.+++.+.+.+    ....|++..|.+++|+++|
T Consensus        21 ~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia   67 (378)
T PRK07682         21 GVISLGVGEPDF-----------------------------VTPWNVREASIRSLEQ----GYTSYTANAGLLELRQEIA   67 (378)
T ss_pred             CeEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHH
Confidence            689999999986                             3355566776666553    2567999999999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      +++.+++|+.++++ +|++|+|+++|+.+++..++. +||+|++++|+|+.|...++..|++++.++++.+++|++|+++
T Consensus        68 ~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  146 (378)
T PRK07682         68 KYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIIN-PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQ  146 (378)
T ss_pred             HHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC-CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHH
Confidence            99999989888886 799999999999999999984 9999999999999999999999999999998766678999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++.+      +++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++.  +.++.... ++   
T Consensus       147 l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~---  214 (378)
T PRK07682        147 IEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA--YTSFASIK-GM---  214 (378)
T ss_pred             HHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC--CCChhhcc-cc---
Confidence            9998876      789999999999999999999999999999999999999999999998753  44554432 11   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ ++|+++||||.|+ +|+|+||
T Consensus       215 -~~-~~i~~~S~SK~~~~~GlR~G~  237 (378)
T PRK07682        215 -RE-RTILISGFSKGFAMTGWRLGF  237 (378)
T ss_pred             -cC-CEEEEecCcccccChhhhhhh
Confidence             22 6899999999998 8999999

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=1e-35  Score=286.72  Aligned_cols=211  Identities=23%  Similarity=0.416  Sum_probs=184.5

Q ss_pred             ceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHH
Q 018147           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (360)
Q Consensus        99 vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~  178 (360)
                      ++++++|+|..                             ..++.+.+++.+....     ...|++..|.++||+++++
T Consensus         2 ~~~~~~g~p~~-----------------------------~~~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~aia~   47 (350)
T TIGR03537         2 LFDFGTGDPKE-----------------------------PTPPFIRKALIDAVPE-----VSQYPSALGTKALREAISG   47 (350)
T ss_pred             eEeccCCCCCC-----------------------------CCCHHHHHHHHHHHhc-----cCCCCCCCCCHHHHHHHHH
Confidence            67899999876                             4467777777766432     5679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCC---CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCH
Q 018147          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       179 ~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~g---d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      ++.+++|+.++++ +|++|+|+++++..++..++. +|   |+|+++.|+|+.|...++..|++++.++++++++|.+|+
T Consensus        48 ~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~-~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  126 (350)
T TIGR03537        48 WFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFID-PEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRL  126 (350)
T ss_pred             HHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcC-CCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCH
Confidence            9999999999998 999999999999999999984 77   699999999999999999999999999998666789999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      +++++++.+      ++|++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ..++...    .
T Consensus       127 ~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~----~  194 (350)
T TIGR03537       127 EKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP--PHSALEV----G  194 (350)
T ss_pred             HHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCchhhc----C
Confidence            999999876      799999999999999999999999999999999999999999999877643  4444332    1


Q ss_pred             CCCCCceEEEEeccCcCc-cccccccC
Q 018147          335 YGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                         .+ ++|+++||||.| .+|+|+||
T Consensus       195 ---~~-~~i~~~s~SK~~g~~GlRiG~  217 (350)
T TIGR03537       195 ---IE-NVLAFHSLSKRSGMTGYRSGF  217 (350)
T ss_pred             ---cC-CEEEEeecccccCCcccccee
Confidence               23 689999999999 57999998

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-35  Score=290.14  Aligned_cols=215  Identities=24%  Similarity=0.354  Sum_probs=189.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+.                             ..++.+.+++.+.+..    ....|.+..|.++||+++
T Consensus        33 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~i   79 (391)
T PRK08361         33 ENVISLGIGEPDF-----------------------------DTPKNIKEAAKRALDE----GWTHYTPNAGIPELREAI   79 (391)
T ss_pred             cCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHH
Confidence            3689999999986                             3466777777776654    255798889999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++.+++|..+++++|++|+|+++++..++.+++. +||+|++++|+|..+...++..|++++.++++++++|.+|+++
T Consensus        80 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  158 (391)
T PRK08361         80 AEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE-EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDE  158 (391)
T ss_pred             HHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcC-CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHH
Confidence            999998889889999999999999999999999984 9999999999999999999999999999999887778999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++. ...++.+..      
T Consensus       159 l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~------  225 (391)
T PRK08361        159 LLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KHYPMIKYA------  225 (391)
T ss_pred             HHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CCCCHhhcC------
Confidence            9999876      789999999999999999999999999999999999999999999988653 344544331      


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ++ ++|+++||||.|+ +|+|+||
T Consensus       226 -~~-~~i~~~s~SK~~~~~GlRiG~  248 (391)
T PRK08361        226 -PD-NTILANSFSKTFAMTGWRLGF  248 (391)
T ss_pred             -CC-CEEEEecCchhcCCcHhhhhh
Confidence             23 5899999999997 8999999

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.1e-35  Score=294.80  Aligned_cols=198  Identities=26%  Similarity=0.456  Sum_probs=176.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-HcC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~g  236 (360)
                      ...|.+..|.+.||+++|+|+.+++|  .++++++|++|+|+++++.+++..++ +|||.|+++.|+|+.|...+. ..|
T Consensus        88 ~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~~~~g  166 (447)
T PLN02607         88 NALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG  166 (447)
T ss_pred             hhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCC
Confidence            45688899999999999999998877  36899999999999999999999999 599999999999999998877 479


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      +++++++++++++|.+|+++++++++++++++.++|+|+++|||||||.+++++++++|+++|+++|+++|+||+|.+++
T Consensus       167 ~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~  246 (447)
T PLN02607        167 VKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSV  246 (447)
T ss_pred             cEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence            99999999877789999999999999888888899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHhhCCCC-CCceEEEEeccCcCcc-ccccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~-~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++. ++.|+.++..++.... ++ ++++++||||.|+ +|+||||
T Consensus       247 f~~~-~f~S~~s~~~~~~~~~~~~-~v~vi~s~SK~fg~~GlRvG~  290 (447)
T PLN02607        247 FSAS-EFVSVAEIVEARGYKGVAE-RVHIVYSLSKDLGLPGFRVGT  290 (447)
T ss_pred             cCCC-CcccHHHHHhhcCCCCCcC-cEEEEEcchhcCCCCcceEEE
Confidence            9864 5888887654432101 33 7899999999997 8999998

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=1.2e-35  Score=291.19  Aligned_cols=218  Identities=24%  Similarity=0.459  Sum_probs=185.4

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+++.|.|...+.                          .+|+.+.+++.+.+...    ...|++..|.++||+++
T Consensus        30 ~~~i~l~~g~p~~~~~--------------------------~p~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~i   79 (398)
T PRK08363         30 IKVIRLNIGDPVKFDF--------------------------QPPEHMKEAYCRAIKEG----HNYYGPSEGLPELREAI   79 (398)
T ss_pred             CCeEEEeCCCCCcCCC--------------------------CCCHHHHHHHHHHHHcC----CCCCCCCCCcHHHHHHH
Confidence            4899999999963111                          34677777777766542    45799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+++|+.+++++|++|+|+++|+..++.+++ ++||+|+++.|+|+.|...++.+|++++.++..++++|.+|+++
T Consensus        80 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~  158 (398)
T PRK08363         80 VKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDD  158 (398)
T ss_pred             HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHH
Confidence            99999999999999999999999999999999998 49999999999999999999999999998843333467899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++.  +.++..+..     
T Consensus       159 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~--~~~~~~~~~-----  225 (398)
T PRK08363        159 IRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK--HVSPGSLTK-----  225 (398)
T ss_pred             HHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc--ccCHHHcCc-----
Confidence            9998865      689999999999999999999999999999999999999999999988653  445443321     


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        +.++|+++||||.| .+|+|+||
T Consensus       226 --~~~vi~~~SfSK~~~~~GlRiG~  248 (398)
T PRK08363        226 --DVPVIVMNGLSKVYFATGWRLGY  248 (398)
T ss_pred             --CCcEEEEecchhccCCccceEEE
Confidence              12589999999995 68999998

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=288.11  Aligned_cols=218  Identities=22%  Similarity=0.271  Sum_probs=186.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ..+|+++.|+|..                             ..+..+.+.+.+.+.. .  ....|++..|.++||+++
T Consensus        29 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-~--~~~~Y~~~~G~~~lr~~i   76 (386)
T PRK07550         29 GPLIDLSQAVPGY-----------------------------PPPPELLRALAEAAAD-P--AAHLYGPVEGLPELREAY   76 (386)
T ss_pred             CCeEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHhC-c--CCcCCCCCCCCHHHHHHH
Confidence            4689999999886                             3356666666666542 2  356799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+.+|..+++++|++|+|+++++..++.+++. +||+|+++.|+|+.+...++..|++++.++++++++|.+|+++
T Consensus        77 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  155 (386)
T PRK07550         77 AAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG-AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAA  155 (386)
T ss_pred             HHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcC-CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHH
Confidence            999999999999999999999999999999999984 9999999999999999999999999999999876678899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.++.. ...++.... +    
T Consensus       156 l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~-~~~~~~~~~-~----  223 (386)
T PRK07550        156 AEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG-APHDLFADP-D----  223 (386)
T ss_pred             HHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC-CCcchhhCC-C----
Confidence            9999976      789999999999999999999999999999999999999999999876543 122322211 0    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++ ++|+++||||.|+ +|+|+||
T Consensus       224 ~~~-~~i~~~S~SK~~g~~G~RiG~  247 (386)
T PRK07550        224 WDD-TLVHLYSFSKSYALTGHRVGA  247 (386)
T ss_pred             ccc-cEEEEecchhhccCcccceEe
Confidence            122 6899999999998 8999998

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=2.2e-35  Score=288.15  Aligned_cols=216  Identities=27%  Similarity=0.429  Sum_probs=186.9

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+|++|.|+.                             ..|+.+++++.+.+..    ....|++..|.++||++++
T Consensus        25 ~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia   71 (387)
T PRK07777         25 GAVNLGQGFPDE-----------------------------DGPPEMLEAAQEAIAG----GVNQYPPGPGIPELRAAIA   71 (387)
T ss_pred             CeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHH
Confidence            789999999987                             2356677776666654    2467999999999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC-CCcCCCHH
Q 018147          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS  255 (360)
Q Consensus       178 ~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~  255 (360)
                      +++.+++|..++++ +|++|+|+++|+..++..++ ++||+|+++.|+|+.|...++..|.+++.++++++ ++|.+|++
T Consensus        72 ~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~  150 (387)
T PRK07777         72 AQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLD  150 (387)
T ss_pred             HHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHH
Confidence            99999999888886 79999999999999999998 49999999999999999999999999999999876 47889999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++.+      ++++|++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++. .+.++..+ +++  
T Consensus       151 ~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~-~~~--  220 (387)
T PRK07777        151 ALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA-RHLPLATL-PGM--  220 (387)
T ss_pred             HHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC-CcccHhhC-CCC--
Confidence            99998875      789999999999999999999999999999999999999999999998664 34455432 111  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||.|+ +|+|+||
T Consensus       221 --~~-~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK07777        221 --RE-RTVTISSAAKTFNVTGWKIGW  243 (387)
T ss_pred             --cC-cEEEEeechhhccCcCceeEE
Confidence              22 5899999999998 8999998

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-35  Score=288.04  Aligned_cols=218  Identities=26%  Similarity=0.414  Sum_probs=189.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+.                             ..|+.+.+++.+.+.+.    ...|++..|.++||+++
T Consensus        24 ~~~i~l~~g~~~~-----------------------------~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~l   70 (382)
T PRK06108         24 EGVLPLWFGESDL-----------------------------PTPDFIRDAAAAALADG----ETFYTHNLGIPELREAL   70 (382)
T ss_pred             CCeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHH
Confidence            4789999999986                             44777888877777652    45699999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC-CCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~  255 (360)
                      ++++.+++|..+++++|++|+|+++++..++..++. +||+|+++.|+|+.|...++..|++++.++++.+ ++|.+|++
T Consensus        71 a~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~  149 (382)
T PRK06108         71 ARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVG-PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLD  149 (382)
T ss_pred             HHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcC-CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHH
Confidence            999999889889999999999999999999999985 9999999999999999999999999999999753 46889999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++.+++      ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++.....++..+..    
T Consensus       150 ~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----  219 (382)
T PRK06108        150 RLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE----  219 (382)
T ss_pred             HHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC----
Confidence            99998865      68999999999999999999999999999999999999999999999873223445444321    


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      . .+ ++|+++||||.|+ +|+|+||
T Consensus       220 ~-~~-~~i~~~S~SK~~g~~G~RiG~  243 (382)
T PRK06108        220 P-DD-RIIFVNSFSKNWAMTGWRLGW  243 (382)
T ss_pred             C-cC-CEEEEeechhhccCcccceee
Confidence            1 12 6899999999996 7999998

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-35  Score=288.72  Aligned_cols=245  Identities=25%  Similarity=0.413  Sum_probs=207.5

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++.+++......+...++++...    .     ++++++++|+|..                             ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~l~~~~~~~-----------------------------~~   45 (393)
T PRK05764          4 LSKRVSRVTPSATLAVTAKAKELKAQ----G-----RDVISLGAGEPDF-----------------------------DT   45 (393)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhc----c-----CCEEEeCCCCCCC-----------------------------CC
Confidence            46677777777666666676665443    1     4799999999986                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      ++.+.+++.+.+.+.    ...|++..|...||+++|+++.+.+|..+++++|++|+|+++++..++..++. +||.|++
T Consensus        46 ~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~-~gd~vl~  120 (393)
T PRK05764         46 PEHIKEAAIEALDDG----KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVII  120 (393)
T ss_pred             CHHHHHHHHHHHhcC----CCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcC-CCCEEEe
Confidence            677777777777642    44699999999999999999999889889999999999999999999999984 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|..|...++.+|.+++.++++++++|.+|++++++++++      +++++++++|+||||.+++.+++++|+++|+
T Consensus       121 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~  194 (393)
T PRK05764        121 PAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAV  194 (393)
T ss_pred             cCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence            9999999999999999999999998777789999999998865      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.|++. .+.++.....+.    .+ ++|+++||||.|+ +|+|+||
T Consensus       195 ~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~----~~-~~i~~~s~SK~~~~~G~RiG~  249 (393)
T PRK05764        195 EHDIWVLSDEIYEKLVYDGA-EFTSIASLSPEL----RD-RTITVNGFSKAYAMTGWRLGY  249 (393)
T ss_pred             HCCcEEEEeccccceeeCCC-CcccHHHcCCCC----cC-CEEEEecCcccccCccceeEE
Confidence            99999999999999988653 345555432221    12 5899999999998 8999998

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=3.9e-35  Score=286.47  Aligned_cols=215  Identities=24%  Similarity=0.426  Sum_probs=187.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+.                             ..++.+.+++.+.+..    ....|++..|.++||+++
T Consensus        28 ~~~i~l~~~~p~~-----------------------------~~~~~~~~a~~~~~~~----~~~~Y~~~~g~~~lr~~i   74 (387)
T PRK07683         28 DNLISLTIGQPDF-----------------------------PTPSHVKEAAKRAITE----NYTSYTHNAGLLELRKAA   74 (387)
T ss_pred             CCeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHH
Confidence            4789999999885                             3366777777777664    256799999999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+++.+++|+.++++ +|++|+|+++|+.++++.++. +||+|+++.|+|+.|...++..|++++.++.+++ +|.+|.+
T Consensus        75 a~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~  152 (387)
T PRK07683         75 CNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILE-PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRST-GFRLTAE  152 (387)
T ss_pred             HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC-CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcc-cCCCCHH
Confidence            999998889989998 999999999999999999984 9999999999999999999999999999998754 5888999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++++.+++      +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++.  ..++.+.. +.  
T Consensus       153 ~l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~--  221 (387)
T PRK07683        153 ALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP--HTSIAHFP-EM--  221 (387)
T ss_pred             HHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC--cCChhhcc-CC--
Confidence            99998865      789999999999999999999999999999999999999999999988653  44554431 11  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        ++ ++|+++||||.|+ +|+|+||
T Consensus       222 --~~-~vi~~~s~SK~~~~pGlRiG~  244 (387)
T PRK07683        222 --RE-KTIVINGLSKSHSMTGWRIGF  244 (387)
T ss_pred             --cC-CeEEEeeccccccCccceeEE
Confidence              23 6899999999998 9999999

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=3.7e-35  Score=286.56  Aligned_cols=216  Identities=21%  Similarity=0.306  Sum_probs=187.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|+.                             ..++.+.+++.+.+..    ....|++..|.+++|+++
T Consensus        30 ~~~i~l~~g~~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~~   76 (386)
T PRK09082         30 HGAINLSQGFPDF-----------------------------DGPPYLVEALAYAMAA----GHNQYPPMTGVAALREAI   76 (386)
T ss_pred             CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHH
Confidence            3689999999986                             3466677777776654    246799999999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ++++.+.+|..++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.|...++..|++++.++++++ +|.+|++
T Consensus        77 a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~  154 (386)
T PRK09082         77 AAKTARLYGRQYDADSEITVTAGATEALFAAILALV-RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQ  154 (386)
T ss_pred             HHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cccCCHH
Confidence            999999889888776 89999999999999999998 59999999999999999999999999999999754 5899999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++++.+++      +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. ++.++... .++  
T Consensus       155 ~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~-~~~s~~~~-~~~--  224 (386)
T PRK09082        155 RFAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA-GHASVLRH-PEL--  224 (386)
T ss_pred             HHHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC-CCCChhhC-cCc--
Confidence            99998876      789999999999999999999999999999999999999999999999764 35565543 211  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||.|+ +|+|+||
T Consensus       225 --~~-~~i~~~S~SK~~~~~G~RiG~  247 (386)
T PRK09082        225 --RE-RAFVVSSFGKTYHVTGWKVGY  247 (386)
T ss_pred             --cC-cEEEEeechhhccchhhhhhh
Confidence              22 6899999999995 8999999

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.3e-35  Score=297.50  Aligned_cols=199  Identities=23%  Similarity=0.373  Sum_probs=173.6

Q ss_pred             CCCCCCCCcCcHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-Hc
Q 018147          159 ATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LH  235 (360)
Q Consensus       159 ~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~  235 (360)
                      ....|++..|.++||+++|+|+.+++|  +.+++++|++|+|+++++..++.+|+ +|||.|++++|+|+.|...++ ..
T Consensus        86 ~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~~~~  164 (496)
T PLN02376         86 DIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLRWRT  164 (496)
T ss_pred             hhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhhC
Confidence            356799999999999999999999888  66899999999999999999999999 599999999999999998887 58


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++++.+++|++|++.++++++.+.+.+.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++
T Consensus       165 G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~  244 (496)
T PLN02376        165 GVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAAT  244 (496)
T ss_pred             CCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcccc
Confidence            99999999987777999999999888665544558999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCHHHHHHhhCC--CCCCceEEEEeccCcCcc-ccccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGY--GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~--~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|++. ++.++.++......  ..++ ++++++||||.|+ +|+||||
T Consensus       245 ~f~~~-~~~si~~l~~~~~~~~~~~~-~v~vv~S~SK~~glpGlRvG~  290 (496)
T PLN02376        245 VFAGG-DFVSVAEVVNDVDISEVNVD-LIHIVYSLSKDMGLPGFRVGI  290 (496)
T ss_pred             ccCCC-CcccHHHhhccccccccCCC-eEEEEEeccccCCCCcceEEE
Confidence            99874 47787766432110  0123 5778999999996 8999998

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=3.7e-35  Score=287.95  Aligned_cols=221  Identities=23%  Similarity=0.424  Sum_probs=188.4

Q ss_pred             cccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           96 FDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        96 ~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      .+++|+|++|+|+..+                         ....++.+.+++.+.+.+.   ....|.+..|.++||++
T Consensus        30 ~~~~i~l~~g~p~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~a   81 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFG-------------------------NLPTDPEVMQAMKDSLDSG---KYNGYAPTVGALSAREA   81 (401)
T ss_pred             CCCeeecCCCCCCCcC-------------------------CCCCCHHHHHHHHHHHhcc---CCCCCCCCCCCHHHHHH
Confidence            3588999999996210                         0134677777777766652   25679999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      +|+++.++ |..+++++|++|+|+++++..++.+++. +||+|+++.|+|+.|...++..|++++.++++.+++|++|++
T Consensus        82 ia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~  159 (401)
T TIGR01264        82 IASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALAN-AGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLK  159 (401)
T ss_pred             HHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCC-CCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHH
Confidence            99999874 5578999999999999999999999995 999999999999999999999999999999877767899999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .+++++++      ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.|++. .+.++..+.     
T Consensus       160 ~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-----  227 (401)
T TIGR01264       160 QLESLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA-TFEPLASLS-----  227 (401)
T ss_pred             HHHHHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc-ccccHHHcC-----
Confidence            99988865      689999999999999999999999999999999999999999999998763 355555442     


Q ss_pred             CCCCceEEEEeccCcCc-cccccccC
Q 018147          336 GEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        ++.++|+++||||.| .+|+|+||
T Consensus       228 --~~~~vi~~~SfSK~~~~~GlRiG~  251 (401)
T TIGR01264       228 --STVPILSCGGLAKRWLVPGWRLGW  251 (401)
T ss_pred             --CCCcEEEEccCcccCCCccceEEE
Confidence              233589999999985 67999998

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-35  Score=291.70  Aligned_cols=216  Identities=25%  Similarity=0.427  Sum_probs=187.6

Q ss_pred             CCccccCcc---CCCCCHHHHHHHH-HHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          128 PSILDRSET---QGLFSADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~-~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      +..++++.+   +..+|.+.++++. +.++.........|.+..|.++||+++++++....|+.+++++|++|+|+++|+
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al  168 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL  168 (459)
T ss_pred             CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence            555555555   3467888887754 444433331267899999999999999999998889999999999999999999


Q ss_pred             HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCC
Q 018147          204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNP  282 (360)
Q Consensus       204 ~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NP  282 (360)
                      .++++.++. |||+|++++|+|+....+++.+|++++.+|++++   ++|+|+|++.++..     ++|+++++ +-|||
T Consensus       169 ~l~~~~l~~-pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~---G~~~e~le~~~~~~-----~~k~~y~~P~~qNP  239 (459)
T COG1167         169 DLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDED---GIDPEALEEALAQW-----KPKAVYVTPTFQNP  239 (459)
T ss_pred             HHHHHHhCC-CCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCC---CCCHHHHHHHHhhc-----CCcEEEECCCCCCC
Confidence            999999995 9999999999999999999999999999999977   99999999999875     79999888 77999


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ||.++|.++.++|+++|++||++||+||+|++|.|++. +..++..+..      ++ ++|+++||||.+++|+||||
T Consensus       240 tG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~-p~~~l~~ld~------~~-rViy~gSFSK~l~PglRlG~  309 (459)
T COG1167         240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP-PPPPLKALDA------PG-RVIYLGSFSKTLAPGLRLGY  309 (459)
T ss_pred             CCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC-CCCChHhhCC------CC-CEEEEeeehhhcccccceee
Confidence            99999999999999999999999999999999999875 3445655532      34 89999999999999999999

>PRK07324 transaminase; Validated

Probab=100.00  E-value=1.8e-35  Score=287.53  Aligned_cols=207  Identities=21%  Similarity=0.299  Sum_probs=181.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .+|+++++|+|++                             ..|+.+ +++.+.+.+.    ...|++..|.++||+++
T Consensus        26 ~~~~~~~~~e~~~-----------------------------~~~~~~-~~~~~~~~~~----~~~Y~~~~G~~~lr~~i   71 (373)
T PRK07324         26 SCIDSLTLEELLA-----------------------------LAGKNP-EAFYQELGQK----KLTYGWIEGSPEFKEAV   71 (373)
T ss_pred             CCCCCCcHHHHHh-----------------------------ccCcch-HHHHHHHhcC----CccCCCCCCCHHHHHHH
Confidence            5899999999987                             335556 7777776653    45899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++.     .+++++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...++..|++++.++++++++|.+|+++
T Consensus        72 a~~~~-----~~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~  145 (373)
T PRK07324         72 ASLYQ-----NVKPENILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDE  145 (373)
T ss_pred             HHHhc-----CCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHH
Confidence            99983     2678999999999999999999998 59999999999999999999999999999999887788999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+++      ++|+|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  +.++....      
T Consensus       146 l~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~s~~~~~------  211 (373)
T PRK07324        146 LRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS--TPSIADLY------  211 (373)
T ss_pred             HHHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--CCChhhcc------
Confidence            9988765      799999999999999999999999999999999999999999999988653  45554321      


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       +  ++|+++||||.|+ +|+|+||
T Consensus       212 -~--~~I~~~s~SK~~~~~G~RiG~  233 (373)
T PRK07324        212 -E--KGISTNSMSKTYSLPGIRVGW  233 (373)
T ss_pred             -C--CEEEEecchhhcCCccceeEE
Confidence             2  5799999999998 7999999

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=1.3e-34  Score=283.09  Aligned_cols=217  Identities=25%  Similarity=0.384  Sum_probs=186.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|+.                             ..|+.+.+++.+.+...    ...|.+..|.++||+++
T Consensus        30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~i   76 (391)
T PRK07309         30 PGILKLTLGEPDF-----------------------------TTPDHVKEAAKRAIDAN----QSHYTGMAGLLELRQAA   76 (391)
T ss_pred             CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCcHHHHHHH
Confidence            3689999999986                             34666777777666542    44699999999999999


Q ss_pred             HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ++++.+++|+.+++ ++|++|+|+++++.+++..++ ++||+|++++|+|..|...++..|.+++.++.++ ++|.+|++
T Consensus        77 a~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~  154 (391)
T PRK07309         77 ADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPE  154 (391)
T ss_pred             HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHH
Confidence            99999988988775 789999999999999999998 4999999999999999999999999999999864 35789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .+++++++.   ..++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. .+.++.+..     
T Consensus       155 ~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~-----  225 (391)
T PRK07309        155 MLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE-PHVSIAEYL-----  225 (391)
T ss_pred             HHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC-CCCCHHHhc-----
Confidence            999988642   12588999999999999999999999999999999999999999999998653 355655442     


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        ++ ++|+++||||.|+ +|+|+||
T Consensus       226 --~~-~~i~~~S~SK~~g~~GlRvG~  248 (391)
T PRK07309        226 --PD-QTILINGLSKSHAMTGWRIGL  248 (391)
T ss_pred             --cC-CEEEEecChhhccCccceeEE
Confidence              23 6899999999996 8999998

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-34  Score=282.83  Aligned_cols=215  Identities=22%  Similarity=0.311  Sum_probs=185.4

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++++|+.|.|..                             .+|+.+.+++.+.+...   ....|.+..|.+++|++++
T Consensus        28 ~~~~l~~g~~~~-----------------------------~~~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~~~~   75 (389)
T PRK05957         28 GTISLGQGVVSY-----------------------------PPPPEAIEALNNFLANP---ENHKYQAVQGIPPLLEAIT   75 (389)
T ss_pred             CeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHH
Confidence            689999999986                             45777888887766543   2467999999999999999


Q ss_pred             HHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          178 AGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~-~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      +++.+.+|..++ +++|++|+|+++++..++..++ ++||+|++++|+|..+...++..|++++.++++.  +|++|+++
T Consensus        76 ~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~  152 (389)
T PRK05957         76 QKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT-DPGDEIILNTPYYFNHEMAITMAGCQPILVPTDD--NYQLQPEA  152 (389)
T ss_pred             HHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCC--CCCcCHHH
Confidence            999998898877 7789999999999999999988 4999999999999999988899999999998853  47899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.+......     
T Consensus       153 l~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~-----  220 (389)
T PRK05957        153 IEQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV-KHFSPGSIPG-----  220 (389)
T ss_pred             HHHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC-CccChhhCCC-----
Confidence            9999876      799999999999999999999999999999999999999999999988753 3344433211     


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ...++|+++||||.|+ +|+|+||
T Consensus       221 -~~~~~i~~~S~SK~~g~~GlRiG~  244 (389)
T PRK05957        221 -SGNHTISLYSLSKAYGFASWRIGY  244 (389)
T ss_pred             -ccCcEEEEecchhhccCccceeEE
Confidence             1126899999999996 8999998

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-34  Score=280.48  Aligned_cols=216  Identities=23%  Similarity=0.350  Sum_probs=187.9

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++++++.|+|+.                             ..|+.+.+++.+.+..... ....|.+..|.+++|+++
T Consensus        33 ~~~~~l~~g~p~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~i   82 (394)
T PRK06836         33 DNVFDFSLGNPSV-----------------------------PPPAAVKEALRELAEEEDP-GLHGYMPNAGYPEVREAI   82 (394)
T ss_pred             CCeEEecCcCCCC-----------------------------CCCHHHHHHHHHHHhcCCc-CcccCCCCCCCHHHHHHH
Confidence            4789999999886                             2366677777766654322 367899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+.++..+++++|++|+|+++++..+++.++ ++||.|++++|+|..|...++..|++++.++++++ +|++|+++
T Consensus        83 a~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~  160 (394)
T PRK06836         83 AESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDA  160 (394)
T ss_pred             HHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHH
Confidence            99999989989999999999999999999999998 49999999999999999999999999999999765 57999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH------cCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~------~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                      +++++++      ++++|++++|+||||.+++.+++++|+++|++      ||++||+||+|.++.|++. ...++.+. 
T Consensus       161 l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-  232 (394)
T PRK06836        161 LEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA-EVPYIFKY-  232 (394)
T ss_pred             HHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC-CCCChHHc-
Confidence            9999976      79999999999999999999999999999999      8999999999999988753 23343322 


Q ss_pred             HhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          331 RSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                             .+ ++|+++||||.|+ +|+|+||
T Consensus       233 -------~~-~~i~~~S~SK~~~~pGlRiG~  255 (394)
T PRK06836        233 -------YD-NSIVVYSFSKSLSLPGERIGY  255 (394)
T ss_pred             -------cC-cEEEEecchhhccCcceeeEE
Confidence                   12 5899999999998 8999998

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=3.3e-34  Score=281.38  Aligned_cols=221  Identities=24%  Similarity=0.405  Sum_probs=190.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|+|.+.+-                         ..+++.+.+++.+.+...   ....|++..|.+++|+++
T Consensus        31 ~~~i~l~~g~p~~~~~-------------------------~~~~~~~~~~~~~~l~~~---~~~~Y~~~~g~~~lr~~i   82 (403)
T TIGR01265        31 KPIIPLSHGDPSVFGN-------------------------LRTDPEAEEAVKDALRSG---KFNGYAPSVGALAAREAV   82 (403)
T ss_pred             CCeEEeCCCCCCccCC-------------------------CCCCHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHH
Confidence            5899999999973111                         134677778777776543   245798999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++..++|+.+++++|++|+|+++++.+++.+++ .+||+|+++.|+|+.|...++..|++++.++++.+++|++|+++
T Consensus        83 a~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  161 (403)
T TIGR01265        83 AEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-NPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDG  161 (403)
T ss_pred             HHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHH
Confidence            99999888888899999999999999999999998 59999999999999999999999999999998766678999999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++.+      +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+..     
T Consensus       162 l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-----  229 (403)
T TIGR01265       162 LEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA-PFIPMASFAS-----  229 (403)
T ss_pred             HHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-Cccchhhhcc-----
Confidence            9998865      689999999999999999999999999999999999999999999998764 4556554422     


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        +.++|+++||||.| .+|+|+||
T Consensus       230 --~~~vi~~~S~SK~~~~pGlRiG~  252 (403)
T TIGR01265       230 --IVPVLSLGGISKRWVVPGWRLGW  252 (403)
T ss_pred             --CCcEEEEeecccccCCCcceEEE
Confidence              22689999999996 67999998

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-34  Score=280.90  Aligned_cols=215  Identities=31%  Similarity=0.446  Sum_probs=183.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+++.|.|+.                             ..|+.+.+++.+...     ....|++..|.+++|+++
T Consensus        30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~-----~~~~Y~~~~g~~~lr~~i   75 (397)
T PRK07568         30 IKVYHLNIGQPDI-----------------------------KTPEVFFEAIKNYDE-----EVLAYSHSQGIPELREAF   75 (397)
T ss_pred             CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHhc-----CCcCcCCCCCCHHHHHHH
Confidence            3689999999886                             346667777655432     256799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCC-CHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL-ETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~~  255 (360)
                      ++++. .+|.++++++|++|+|+++++..++..++ ++||+|++++|+|..|...++..|++++.++++.+++|.+ +++
T Consensus        76 a~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~  153 (397)
T PRK07568         76 AKYYK-KWGIDVEPDEILITNGGSEAILFAMMAIC-DPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKE  153 (397)
T ss_pred             HHHHH-HhCCCCCcceEEEcCChHHHHHHHHHHhc-CCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHH
Confidence            99998 57888999999999999999999999998 4999999999999999999999999999999975555664 689


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++|+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+.. .  
T Consensus       154 ~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~s~~~~~~-~--  223 (397)
T PRK07568        154 EIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL-KYTSALSLEG-L--  223 (397)
T ss_pred             HHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC-CccChhhcCC-C--
Confidence            99988866      789999999999999999999999999999999999999999999988764 3556554421 1  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||.|+ +|+|+||
T Consensus       224 --~~-~~i~~~S~SK~~~~~G~R~G~  246 (397)
T PRK07568        224 --ED-RVIIIDSVSKRYSACGARIGC  246 (397)
T ss_pred             --cC-CEEEEecchhhccCCCcceEE
Confidence              22 6899999999998 6999998

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=3.4e-34  Score=280.62  Aligned_cols=218  Identities=23%  Similarity=0.346  Sum_probs=183.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++++++.|+|+.                             ..|+.+++++.+.+...   ....|++..|.++||+++
T Consensus        29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~ai   76 (395)
T PRK08175         29 EDIIDFSMGNPDG-----------------------------PTPPHIVEKLCEVAQRP---DTHGYSTSRGIPRLRRAI   76 (395)
T ss_pred             CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CcCCCCCCCCCHHHHHHH
Confidence            4799999999986                             33666777776666442   367899999999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ++++.+++|+.++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.+...++..|++++.+++++++.   +.+
T Consensus        77 a~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~  152 (395)
T PRK08175         77 SRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL-DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFN  152 (395)
T ss_pred             HHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHH
Confidence            999999899999987 79999999999999999998 5999999999999999999999999999999987643   478


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +++++++..   ..++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ...++... +.   
T Consensus       153 ~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~-~~---  224 (395)
T PRK08175        153 ELERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW-KAPSIMQV-PG---  224 (395)
T ss_pred             HHHHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC-CCcchhcC-CC---
Confidence            888877631   12688999999999999999999999999999999999999999999988654 34454433 11   


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ..+ ++|+++||||.|+ +|+|+||
T Consensus       225 -~~~-~~i~~~S~SK~~g~pGlRiG~  248 (395)
T PRK08175        225 -AKD-VAVEFFTLSKSYNMAGWRIGF  248 (395)
T ss_pred             -ccc-CEEEEeeccccccCcchhhee
Confidence             123 5789999999995 8999999

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-34  Score=286.15  Aligned_cols=196  Identities=20%  Similarity=0.230  Sum_probs=158.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhh-cCCCC-C--CCCEEEcCChHHHHHHHHHH-----
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR-DGFPA-D--PNDIFLTDGASPAVHMMMQL-----  209 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~-~g~~~-~--~~~I~~t~Ga~~al~~~~~~-----  209 (360)
                      ..|+.+.+ +.+.+..     . .|+++.|.+++|+++++++.++ .+... .  .++|++|+|+++|+..++.+     
T Consensus       113 ~~~~~v~e-~~~~~~~-----~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~  185 (527)
T PRK09275        113 DADEFVYE-LVDGIIG-----D-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENG  185 (527)
T ss_pred             CCCHHHHH-HHHHHhc-----C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhh
Confidence            33555555 4454432     2 4999999999999999966543 33222 2  34899999999999999886     


Q ss_pred             HccCCCCEEEEcCCCchHHHHHHHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          210 LIRSENDGILCPIPQYPLYSASIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       210 l~~~~gd~Vlv~~P~y~~~~~~~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++ +|||+|++++|+|+.|...++..|  .+++.++++++++|.+|+++|++++++      ++|+|+|+|||||||.++
T Consensus       186 ll-~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~------~tkai~l~nP~NPTG~v~  258 (527)
T PRK09275        186 LL-KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAM  258 (527)
T ss_pred             cC-CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC------CCCEEEEeCCcCCcCCCC
Confidence            56 599999999999999999988775  555666666677899999999998765      899999999999999999


Q ss_pred             CHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          288 AEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~--~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +.+++++|+++|++  ++++||+||+|.+|.+    .+.++....       ++ ++|+++||||.|+ +|+|+||
T Consensus       259 s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~s~~~~~-------~~-~~I~v~SfSK~f~mtG~RlG~  322 (527)
T PRK09275        259 SDESLEKIADIVNEKRPDLMIITDDVYGTFVD----DFRSLFAVL-------PY-NTILVYSFSKYFGATGWRLGV  322 (527)
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc----cccCHHHhC-------CC-CEEEEeehhhhccCcHhHHhh
Confidence            99999999999965  4999999999999764    255654432       33 6899999999996 8999999

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=6.7e-34  Score=279.12  Aligned_cols=240  Identities=25%  Similarity=0.400  Sum_probs=188.0

Q ss_pred             Chhhhccccc-hhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           62 NPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        62 ~~~~~~~~~~-~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      |+.+.++..+ ++..+..++.+.+++       .|..++|+++.|+|..                             .+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~l~~~~~~~-----------------------------~~   47 (402)
T TIGR03542         4 NPHFLKLKSSYLFSEINRRVNEFRKK-------HPSADIIRLGIGDTTQ-----------------------------PL   47 (402)
T ss_pred             CCCccccCcchHHHHHHHHHHHHHhc-------cCCCCeEEcCCCCCCC-----------------------------CC
Confidence            4555555543 455556666665543       1336899999999987                             45


Q ss_pred             CHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      ++.+.+++.+.+.+... .....|.+..|.++||+++|+++.+.   .+++++|++|+|+++++..++ .++ .+||+|+
T Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~Ga~~al~~l~-~l~-~~gd~Vl  122 (402)
T TIGR03542        48 PASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDGAKCDVFRLQ-SLF-GSDNTVA  122 (402)
T ss_pred             CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCCcHHHHHHHH-Hhc-CCCCEEE
Confidence            77788888877765421 12457989999999999999986432   388999999999999999875 455 4999999


Q ss_pred             EcCCCchHHHHHHHHcCC-----------eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          220 CPIPQYPLYSASIALHGG-----------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      +++|+|+.|...++.+|+           +++.++++++++|.+|++..     +      ++++|+++|||||||.+++
T Consensus       123 v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~------~~~~i~l~nP~NPTG~~~s  191 (402)
T TIGR03542       123 VQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-----P------KIDIIYLCSPNNPTGTVLT  191 (402)
T ss_pred             EeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-----C------CceEEEEeCCCCCCCccCC
Confidence            999999999999999999           99999987666676664321     1      6899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+++++|+++|++++++||+||+|.+|.+++. .+.++... +.    ..+ ++|+++||||.|+ +|+|+||
T Consensus       192 ~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~-~~----~~~-~vi~~~SfSK~~g~pGlRiG~  257 (402)
T TIGR03542       192 KEQLKELVDYANEHGSLILFDAAYSAFISDPS-LPHSIFEI-PG----AKE-CAIEFRSFSKTAGFTGVRLGW  257 (402)
T ss_pred             HHHHHHHHHHHHHcCeEEEEEchhhhhccCCC-CCcchhhC-CC----Ccc-cEEEEecCccccCCCCcceEE
Confidence            99999999999999999999999999987653 23333332 11    123 6899999999995 8999998

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02397 aspartate transaminase

Probab=100.00  E-value=8.8e-34  Score=279.88  Aligned_cols=190  Identities=17%  Similarity=0.103  Sum_probs=148.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE-----EEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-----FLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL  234 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I-----~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~  234 (360)
                      ..+|++..|.++||+++++|+.++.+...++++|     +.++|+.+ +...+..++ .|||+|++++|+|+.|...++.
T Consensus        84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~  161 (423)
T PLN02397         84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARF-YPGSTIYIPNPTWGNHHNIFRD  161 (423)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHh-CCCCEEEEeCCCchhHHHHHHH
Confidence            5589999999999999999997665433334444     33444433 333444444 4999999999999999999999


Q ss_pred             cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       235 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +|++++.+++..+++|++|++.+++.++..   .++++++++++||||||.+++.+++++|+++|++||++||+||+|.+
T Consensus       162 ~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~  238 (423)
T PLN02397        162 AGVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQG  238 (423)
T ss_pred             cCCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCC
Confidence            999999999854445899999999888642   12577888889999999999999999999999999999999999999


Q ss_pred             CccCCC-CCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          315 NVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       315 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |.|++. .++.++..+.. .    .+ ++|+++||||+|+ +|+||||
T Consensus       239 l~~~~~~~~~~~~~~~~~-~----~~-~vI~~~SfSK~~~~~G~RvG~  280 (423)
T PLN02397        239 FASGDLDADAQSVRMFVE-D----GH-EILVAQSYAKNMGLYGERVGA  280 (423)
T ss_pred             ccCCchhhhhHHHHHHHh-c----CC-cEEEEEECcccCCCccccceE
Confidence            998642 12334433321 1    12 5899999999999 7999999

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=4.5e-34  Score=282.81  Aligned_cols=190  Identities=17%  Similarity=0.180  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      +.+.+++.+....     ...|++..|.++||+++++++.+..+   .+++|++|+|++++|..++++++. |||+|+++
T Consensus       101 p~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~l~~-pgd~Vlv~  171 (431)
T PRK15481        101 PDLSRYFARLSRT-----PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCAHLL-PGDSVAVE  171 (431)
T ss_pred             HHHHHHHHHhhhh-----hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHHhCC-CCCEEEEe
Confidence            4455555443322     45799999999999999999865432   356999999999999999999994 99999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +|+|+.|...++..|++++.++++++   ++|+++|++++++      ++|+++++ |||||||.+++.+++++|+++|+
T Consensus       172 ~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~  242 (431)
T PRK15481        172 DPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLA  242 (431)
T ss_pred             CCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999754   6899999999876      78999998 99999999999999999999999


Q ss_pred             Hc-CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          301 KE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       301 ~~-~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++ +++||+||+|.++.+++.   .+....      . .+ ++|+++||||.|++|+|+||
T Consensus       243 ~~~~~~ii~De~Y~~~~~~~~---~~~~~~------~-~~-~vi~~~SfSK~~~~GlRiG~  292 (431)
T PRK15481        243 RYPQVLVIIDDHFALLSSSPY---HSVIPQ------T-TQ-RWALIRSVSKALGPDLRLAF  292 (431)
T ss_pred             hcCCceEEecCchhhhccCCC---CCCCcC------C-CC-CEEEEeeeccccCCCceeEE
Confidence            99 999999999999876532   222111      1 23 68999999999999999998

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-33  Score=260.75  Aligned_cols=216  Identities=22%  Similarity=0.392  Sum_probs=195.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ++++.|.+.+.++                             ..||.+++++++.++.    +..+|+  .+..++.+++
T Consensus        25 ~DvlPmWVADMDf-----------------------------~~pp~i~~Al~~rvdh----GvfGY~--~~~~~~~~ai   69 (388)
T COG1168          25 EDVLPMWVADMDF-----------------------------PTPPEIIEALRERVDH----GVFGYP--YGSDELYAAI   69 (388)
T ss_pred             CCcceeeeecccC-----------------------------CCCHHHHHHHHHHHhc----CCCCCC--CCCHHHHHHH
Confidence            5899999999998                             6799999999999887    477787  5578899999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~  255 (360)
                      ++|.++++++.++++.|++++|...++..+++.|.+ +||.|++..|.|+++...++..|.+++..|+. +++.|.+|++
T Consensus        70 ~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~-~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~  148 (388)
T COG1168          70 AHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK-PGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFD  148 (388)
T ss_pred             HHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc-CCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHH
Confidence            999999999999999999999999999999999995 99999999999999999999999999999997 5567899999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++.+.     ++|++++||||||||.+++++++++|.++|++||+.||+||+|+++++.+. ++.++..+.+... 
T Consensus       149 ~LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a-  221 (388)
T COG1168         149 ALEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFA-  221 (388)
T ss_pred             HHHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhh-
Confidence            999999874     689999999999999999999999999999999999999999999999996 5888877766443 


Q ss_pred             CCCCceEEEEeccCcCcc-cccccc
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSK  359 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvG  359 (360)
                         | +.|.+.|-||+|. +|++..
T Consensus       222 ---~-~~it~~saSKtFNlaGL~~a  242 (388)
T COG1168         222 ---D-NSITLTSASKTFNLAGLKCA  242 (388)
T ss_pred             ---c-ceEEEeeccccccchhhhhe
Confidence               4 6899999999985 466543

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1e-33  Score=274.44  Aligned_cols=204  Identities=16%  Similarity=0.269  Sum_probs=172.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+|+.|++.+                             ++|+.+++++.+.+.+     ...|+ ..|.++||+++
T Consensus        29 ~~~i~l~~nen~~-----------------------------~~~~~v~~a~~~~~~~-----~~~Yp-~~g~~~Lr~ai   73 (366)
T PRK01533         29 HSFVKLASNENPF-----------------------------GCSPRVLDELQKSWLD-----HALYP-DGGATTLRQTI   73 (366)
T ss_pred             CceEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----cCcCC-CCCHHHHHHHH
Confidence            4789999988876                             6788899988776654     22464 56899999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++++++. +||+|++++|+|+.|...++..|++++.+++++   +++|+++
T Consensus        74 a~~~------~~~~~~I~vt~Gs~e~i~~~~~~l~~-~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~---~~~d~~~  143 (366)
T PRK01533         74 ANKL------HVKMEQVLCGSGLDEVIQIISRAVLK-AGDNIVTAGATFPQYRHHAIIEGCEVKEVALNN---GVYDLDE  143 (366)
T ss_pred             HHHh------CCCcceEEECCCHHHHHHHHHHHhcC-CCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCC---CCcCHHH
Confidence            9998      47899999999999999999999984 999999999999999999999999999999853   4799999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++++++|||||||.+++.+++++|+++|++++ ++|+||+|.+|.+++.  ..+......    .
T Consensus       144 l~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~~~~~----~  210 (366)
T PRK01533        144 ISSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETLPLLE----K  210 (366)
T ss_pred             HHHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--CcchhHHhc----c
Confidence            9998866      7899999999999999999999999999998766 5777999999877542  333333222    1


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  ++|+++||||.|+ +|+|+||
T Consensus       211 ~~--~vi~~~SfSK~~~l~GlRiG~  233 (366)
T PRK01533        211 HK--NILVLRTFSKAYGLASFRVGY  233 (366)
T ss_pred             CC--CEEEEeCchHHhcChHHHHhH
Confidence            22  5899999999998 8999998

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-33  Score=273.72  Aligned_cols=200  Identities=17%  Similarity=0.173  Sum_probs=169.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+.+... ....|++ .|.+.||+++|+|+++++|+++++++|++|+|+++++..++++++. +||.|
T Consensus        39 ~~~~~~~~al~~~l~~~~~-~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~-~gd~v  115 (368)
T PRK03317         39 PPSPALVADIAEAVAEAAA-GLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGG-PGRTA  115 (368)
T ss_pred             CCCHHHHHHHHHHHhhhhh-hhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcC-CCCEE
Confidence            6688899998887764321 3567865 5899999999999999999999999999999999999999999994 99999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.|...++..|.+++.++.+  ++|++|+++++++++..     ++++|+++|||||||.+++.+++++|+++
T Consensus       116 ~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~  188 (368)
T PRK03317        116 LGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDA  188 (368)
T ss_pred             EEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999888764  34799999999998743     68899999999999999998888888877


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |   ++++|+||+|.+|.+++.   .+......    .++  ++|+++||||+|+ +|+|+||
T Consensus       189 ~---~~~lI~DE~y~~~~~~~~---~~~~~~~~----~~~--~~i~~~SfSK~~g~~GlRiG~  239 (368)
T PRK03317        189 A---PGIVVVDEAYAEFRRSGT---PSALTLLP----EYP--RLVVSRTMSKAFAFAGGRLGY  239 (368)
T ss_pred             C---CceEEEeCCchhhcccCC---cCHHHHHH----hCC--CEEEEEechhhhccchhhhhh
Confidence            7   699999999999876552   23333322    123  5899999999997 7999998

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=5.9e-34  Score=275.20  Aligned_cols=227  Identities=26%  Similarity=0.486  Sum_probs=190.0

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHH-HHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ++|+|+.|++....+.|.                         ++++++++.+ .....   ....|++..|.++||+++
T Consensus         2 ~~I~l~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~i   53 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPP-------------------------PPAAIKAAIRGAATSS---SFLGYPPPQGYPELREAI   53 (363)
T ss_dssp             TEEESSSSSTSSTTSSHH-------------------------HHHHHHHHHHHHHHHT---GCTSSTCTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCcccccc-------------------------hHHHHHHHHHHhhccc---ccccCCCchhhHHHHHHH
Confidence            689999999998655443                         5556666554 22222   478999999999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHH-ccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l-~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      |+++.+.+|+.++++ +|++++|+.+++..++..+ . ++||+|+++.|+|+.|...++..|.+++.++++.+++|.+|+
T Consensus        54 a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~-~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  132 (363)
T PF00155_consen   54 ADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI-NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDP  132 (363)
T ss_dssp             HHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS-STTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETH
T ss_pred             HHHhhhccCcccccceEEEEecccccchhhhhhcccc-cccccceecCCccccccccccccCceeeeccccccccccccc
Confidence            999998889999999 9999999999999999999 6 499999999999999999999999999999988777899999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      ++|++.+++...++.+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ++.+......   
T Consensus       133 ~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~---  208 (363)
T PF00155_consen  133 EALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP-DFGPIRSLLD---  208 (363)
T ss_dssp             HHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS-HTHHHHGHHT---
T ss_pred             cccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCC-ccCccccccc---
Confidence            999999987555544578999999999999999999999999999999999999999999988764 2333222212   


Q ss_pred             CCCCCceEEEEeccCcCcc-ccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+.  ++|+++||||+|+ +|+|+||
T Consensus       209 -~~~--~vi~~~S~SK~~g~~GlRvG~  232 (363)
T PF00155_consen  209 -EDD--NVIVVGSLSKSFGLPGLRVGY  232 (363)
T ss_dssp             -TTS--TEEEEEESTTTTTSGGGTEEE
T ss_pred             -ccc--cceeeeecccccccccccccc
Confidence             112  4899999999997 7999998

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-33  Score=272.75  Aligned_cols=201  Identities=17%  Similarity=0.257  Sum_probs=165.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhc--CCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD--GFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~--g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      .+|+.+++++.+.+....  ....|++ .|.++||+++|+|+.+++  |+.+++++|++|+|+++++..++.+++. +||
T Consensus        41 ~~~~~~~~~~~~~~~~~~--~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~-~g~  116 (374)
T PRK02610         41 DLPPDLKQKLAWLYQQGI--ESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCL-GGE  116 (374)
T ss_pred             CCCHHHHHHHHHHHhhcc--cccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcC-CCC
Confidence            678889999888766521  1356865 699999999999998876  5779999999999999999988888774 776


Q ss_pred             -EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHH
Q 018147          217 -GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (360)
Q Consensus       217 -~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i  295 (360)
                       .|+++.|+|+.|...++.+|++++.++++++ +|++|+++|++++++..  ..++|+|+++|||||||.+++.+++++|
T Consensus       117 ~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l  193 (374)
T PRK02610        117 GSILVAEPTFSMYGILAQTLGIPVVRVGRDPE-TFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWL  193 (374)
T ss_pred             CeEEEcCCChHHHHHHHHHcCCEEEEecCCcc-cCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence             8999999999999999999999999998643 58999999999886410  1279999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      +++|  ++++||+||+|.+|.+..     .+..+ .    .++  ++|+++||||.| .+|+|+||
T Consensus       194 ~~~~--~~~~iI~De~Y~~~~~~~-----~~~~~-~----~~~--~~ivi~SfSK~~g~~GlRiG~  245 (374)
T PRK02610        194 RSLP--EDILVVIDEAYFEFSQTT-----LVGEL-A----QHP--NWVILRTFSKAFRLAAHRVGY  245 (374)
T ss_pred             Hhcc--CCcEEEEeccccccCccc-----hHHHH-h----cCC--CEEEEEecchhccCcccceee
Confidence            9887  489999999999975321     11111 1    123  478899999999 68999999

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=7.5e-33  Score=267.33  Aligned_cols=192  Identities=19%  Similarity=0.277  Sum_probs=162.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .+|+.+++++.+.+..     ...|++. |.++||+++|+|+      ++++++|++|+|+++++..+++++  .+ ++|
T Consensus        32 ~~p~~~~~a~~~~~~~-----~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~~~~~--~~-~~v   96 (354)
T PRK06358         32 GVPESLKQAITENLDK-----LVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELIFNIVKVT--KP-KKV   96 (354)
T ss_pred             CCCHHHHHHHHHHHHh-----hhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHHh--CC-CcE
Confidence            4578888888877643     4568765 5899999999998      578999999999999999999986  24 689


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.|...++..|++++.++++++++|.+| +++++.+.+      ++++++++|||||||.+++.+++++|+++
T Consensus        97 ~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~  169 (354)
T PRK06358         97 LILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDK  169 (354)
T ss_pred             EEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence            99999999999999999999999999877778999 666665544      68999999999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++++++||+||+|.+|.+++.  +.+......    . .+ ++|+++||||.|+ +|+|+||
T Consensus       170 a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~----~-~~-~vi~~~S~SK~~gl~G~RiG~  224 (354)
T PRK06358        170 CEKRNIYLIIDEAFMDFLEENE--TISMINYLE----N-FK-NLIIIRAFTKFFAIPGLRLGY  224 (354)
T ss_pred             HHhcCCEEEEeCcccccCCCcc--chhHHHhcc----C-CC-CEEEEEechhhccCcchhhee
Confidence            9999999999999999988654  334333322    1 12 6899999999998 9999999

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=4.6e-33  Score=277.67  Aligned_cols=195  Identities=22%  Similarity=0.270  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHH-HHHhhcCCC-CCCC--CEEEcCChHHHHHHHHHH-----Hc
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA-GIEARDGFP-ADPN--DIFLTDGASPAVHMMMQL-----LI  211 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~-~l~~~~g~~-~~~~--~I~~t~Ga~~al~~~~~~-----l~  211 (360)
                      |++.+.++.+.+..     . .|+++.|...+++++++ |+.++++.. ..++  +|++|+|+++|+..++.+     ++
T Consensus       108 ~~~~~~~~~~~~~~-----~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll  181 (521)
T TIGR03801       108 PDAFLYEMCDGIIG-----D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL  181 (521)
T ss_pred             CCHHHHHHHHHhhc-----C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC
Confidence            44556666555422     2 48877888888888874 666554433 3333  899999999999999887     56


Q ss_pred             cCCCCEEEEcCCCchHHHHHHHHc--CCeEEEeecCCCCC-----cCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          212 RSENDGILCPIPQYPLYSASIALH--GGTLVPYYLDEATG-----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~~~--g~~~~~v~~~~~~~-----~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                       +|||+|+++.|+|+.|...++..  |++++.++++++++     |.+|.+++++++++      ++|+|+|+|||||||
T Consensus       182 -~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~------~~kai~l~nP~NPTG  254 (521)
T TIGR03801       182 -KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP------SIKALFVVNPSNPPS  254 (521)
T ss_pred             -CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC------CCcEEEEeCCCCCCC
Confidence             59999999999999999987775  78888888865443     99999999987765      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          285 QVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~--~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+++.+++++|+++|+++  +++||+||+|.+|.+    ++.|+....       ++ ++|+++||||.|+ +|+|+||
T Consensus       255 ~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~sl~~~~-------~~-~vI~v~SfSK~fg~~G~RlG~  321 (521)
T TIGR03801       255 VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD----DFRSLFAEL-------PY-NTIGVYSFSKYFGATGWRLGT  321 (521)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc----cccchhhhC-------CC-CEEEEEcchhhccCchhhhhh
Confidence            999999999999999986  899999999999765    255654432       33 6899999999995 8999999

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6e-33  Score=268.20  Aligned_cols=203  Identities=18%  Similarity=0.319  Sum_probs=170.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|++.+                             .+|+.+++++.+.+..     ...|++ .|.++||+++
T Consensus        30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-----~~~Y~~-~~~~~lr~~i   74 (357)
T PRK14809         30 DDLVKLSSNENPH-----------------------------GPSPAAVEAIREAAER-----VHSYPK-ASHADLTAAL   74 (357)
T ss_pred             cceeEecCCCCCC-----------------------------CCCHHHHHHHHHHHhh-----hhcCCC-CCHHHHHHHH
Confidence            4799999998776                             5677888887776653     456865 6799999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..+++++++ +||.|++++|+|+.|...++..|+.++.++++.+++|.++.++
T Consensus        75 a~~~------~~~~~~I~it~G~~~al~~~~~~~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~  147 (357)
T PRK14809         75 ADRW------DVSPEQVWLANGGDGALDYLARAMLD-PGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADT  147 (357)
T ss_pred             HHHh------CCCcceEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHH
Confidence            9997      57899999999999999999999984 9999999999999999988999999999999766678888888


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+.       ++|+|+++|||||||.+++.+++++|+++|++ +++||+||+|.++.+++     +......    .
T Consensus       148 ~~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~~~~~----~  210 (357)
T PRK14809        148 VLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-----SAVALVE----E  210 (357)
T ss_pred             HHHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-----hhHHHHh----h
Confidence            777542       57899999999999999999999999999975 78999999999987642     1112222    1


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ ++|+++||||.|+ +|+|+||
T Consensus       211 -~~-~vi~~~SfSK~~~~~GlRiG~  233 (357)
T PRK14809        211 -RD-DVAVLRTFSKAYGLAGLRLGY  233 (357)
T ss_pred             -CC-CEEEEecchhHhcCcchhhee
Confidence             12 6899999999997 8999998

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9.4e-33  Score=268.24  Aligned_cols=206  Identities=18%  Similarity=0.258  Sum_probs=173.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.|..                             ..|+.+.+++.+....     ...|++..| .+||+++
T Consensus        36 ~~~i~l~~~~~~~-----------------------------~~~~~~~~al~~~~~~-----~~~Y~~~~g-~~lr~~i   80 (371)
T PRK05166         36 PRIAKLGSNENPL-----------------------------GPSPAVRRAFADIAEL-----LRLYPDPQG-RALREAI   80 (371)
T ss_pred             cceEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCCCcH-HHHHHHH
Confidence            4789999997765                             3466777776654432     557999988 4999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++.+++. +||.|+++.|+|+.+...++..|++++.++++++  |++|+++
T Consensus        81 a~~~------~~~~~~i~~t~G~~~~l~~~~~~~~~-~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~  151 (371)
T PRK05166         81 AART------GVPADRIILGNGSEDLIAVICRAVLR-PGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPD--LGFDLDA  151 (371)
T ss_pred             HHHh------CcCHHHEEEcCCHHHHHHHHHHHhcC-CCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCC--CCCCHHH
Confidence            9987      46789999999999999999999984 9999999999999999999999999999998754  6899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++++++|||||||.+++.+++++|+++|++ +++||+||+|.++.+++.  +.++.......   
T Consensus       152 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~---  219 (371)
T PRK05166        152 LCAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD--YPSALTLLKAR---  219 (371)
T ss_pred             HHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC--cccHHHHHhhc---
Confidence            9998876      68999999999999999999999999999874 889999999999886543  44554443321   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ ++|+++||||.|+ +|+|+||
T Consensus       220 -~~-~vi~i~SfSK~~~l~GlRiG~  242 (371)
T PRK05166        220 -GL-PWIVLRTFSKAYGLAGLRVGY  242 (371)
T ss_pred             -CC-CEEEEeechHhhhcchhheee
Confidence             12 5899999999998 9999999

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=3.3e-32  Score=263.12  Aligned_cols=224  Identities=25%  Similarity=0.366  Sum_probs=177.2

Q ss_pred             ccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHH
Q 018147           69 EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERA  148 (360)
Q Consensus        69 ~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~  148 (360)
                      ++.+...+...+.+.++.    +     .++|+++.|+|..                             .+++.+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~----~-----~~~i~l~~~~p~~-----------------------------~~~~~~~~~~   43 (357)
T TIGR03539         2 PDFPWDSLAPYKAKAASH----P-----DGIVDLSVGTPVD-----------------------------PVPPLIRAAL   43 (357)
T ss_pred             CcchHHHHHHHHHHhhhC----C-----CCeEEccCCCCCC-----------------------------CCCHHHHHHH
Confidence            455556677777666543    1     4789999999975                             3356666666


Q ss_pred             HHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEEEcCCCch
Q 018147          149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYP  226 (360)
Q Consensus       149 ~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vlv~~P~y~  226 (360)
                      .+...      ...|++..|.++||+++++++.+++|+. +++++|++|+|+++++..++..+ + ++||.|++++|+|+
T Consensus        44 ~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~  116 (357)
T TIGR03539        44 AAAAD------APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYP  116 (357)
T ss_pred             HHHHh------hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcH
Confidence            54432      4569999999999999999999998987 99999999999999999998888 5 59999999999999


Q ss_pred             HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEE
Q 018147          227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL  306 (360)
Q Consensus       227 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~l  306 (360)
                      .|...++..|++++.++         +++.+..   .      ++++|++++|+||||.+++.+++++|+++|+++|++|
T Consensus       117 ~~~~~~~~~g~~~~~v~---------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i  178 (357)
T TIGR03539       117 TYEVGALLAGATPVAAD---------DPTELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVV  178 (357)
T ss_pred             HHHHHHHhcCCEEeccC---------ChhhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEE
Confidence            99999999999988873         2232221   1      6899999999999999999999999999999999999


Q ss_pred             EEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       307 I~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      |+||+|.++.|++.  ..+...  +.......+ ++|+++||||.| .+|+|+||
T Consensus       179 i~De~y~~~~~~~~--~~~~~~--~~~~~~~~~-~vi~~~S~SK~~~~~G~R~G~  228 (357)
T TIGR03539       179 ASDECYLELGWEGR--PVSILD--PRVCGGDHT-GLLAVHSLSKRSNLAGYRAGF  228 (357)
T ss_pred             EEecchhhhccCCC--Ccccee--cccCCCccc-cEEEEeccccccCCCceeEEE
Confidence            99999999888653  222111  110000112 589999999998 68999998

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.1e-32  Score=264.38  Aligned_cols=203  Identities=19%  Similarity=0.261  Sum_probs=168.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|.+..                             ++|+.+++++.+.+..     ...|++. +..++|+++
T Consensus        20 ~~~i~l~~~~~~~-----------------------------~~p~~~~~a~~~~~~~-----~~~y~~~-~~~~lr~~i   64 (356)
T PRK08056         20 DQLLDFSANINPL-----------------------------GMPVSLKRAIIDNLDC-----AERYPDV-EYRHLHQAL   64 (356)
T ss_pred             hhEEEeccccCCC-----------------------------CCCHHHHHHHHHHHHh-----cccCcCc-cHHHHHHHH
Confidence            4789999997776                             6688899888776654     2358764 689999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      .+++++|++|+|+++++..+++.+  .+|+ |++++|+|..|...++..|++++.++++++++|.+| ++
T Consensus        65 a~~~------~~~~~~i~it~Ga~~~l~~~~~~l--~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~  134 (356)
T PRK08056         65 ARHH------QVPASWILAGNGETESIFAVVSGL--KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DA  134 (356)
T ss_pred             HHHh------CcChhhEEECCCHHHHHHHHHHHh--CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HH
Confidence            9997      468999999999999999999987  3775 788899999999999999999999999877678777 44


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+.+      ++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+.+.   ...    
T Consensus       135 ~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~---~~~----  200 (356)
T PRK08056        135 ILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDET-GFIPQ---LAD----  200 (356)
T ss_pred             HHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcch-HHHHH---hcc----
Confidence            5555543      799999999999999999999999999999999999999999999877542 12221   111    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  ++|+++||||.|+ +|+|+||
T Consensus       201 ~~--~~i~~~S~SK~~~~~G~RiG~  223 (356)
T PRK08056        201 NP--HLWVLRSLTKFYAIPGLRLGY  223 (356)
T ss_pred             CC--CEEEEEechhhccCcchhhee
Confidence            12  5899999999999 8999999

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-32  Score=264.38  Aligned_cols=201  Identities=16%  Similarity=0.220  Sum_probs=170.1

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      .++++++|+|.+                             +.|+.+++++.+.+..     ...|++. +..+||+++|
T Consensus        33 ~~~~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~Y~~~-~~~~Lr~~ia   77 (369)
T PRK08153         33 FRARIGANESGF-----------------------------GPSPSVIAAMREAAAE-----IWKYGDP-ENHDLRHALA   77 (369)
T ss_pred             ceeEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCCC-ccHHHHHHHH
Confidence            457999999886                             5688898888776643     3468877 4899999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L  257 (360)
                      +++      ++++++|++|+|+++++..++..++. +||.|+++.|+|+.|...++..|++++.+|++.+   .+|++++
T Consensus        78 ~~~------~~~~~~I~it~G~~~~l~~~~~~~~~-~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l  147 (369)
T PRK08153         78 AHH------GVAPENIMVGEGIDGLLGLIVRLYVE-PGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDAL  147 (369)
T ss_pred             HHh------CCCHHHEEEcCCHHHHHHHHHHHhcC-CCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHH
Confidence            997      47889999999999999999999984 9999999999999999999999999999998654   6889998


Q ss_pred             HHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       258 ~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++.+...     ++++|+++|||||||.+++.+++.+|+++|+ ++++||+||+|.++.+++.  ..++..       .+
T Consensus       148 ~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~--~~~~~~-------~~  212 (369)
T PRK08153        148 LDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA--APPIDT-------DD  212 (369)
T ss_pred             HHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc--chhhhh-------cC
Confidence            8776532     7899999999999999999999999999887 4999999999999887542  323221       11


Q ss_pred             CCceEEEEeccCcCcc-ccccccC
Q 018147          338 KDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +  ++|+++||||.|+ +|+|+||
T Consensus       213 ~--~~i~~~SfSK~~g~~GlRiG~  234 (369)
T PRK08153        213 P--NVIRMRTFSKAYGLAGARVGY  234 (369)
T ss_pred             C--CEEEEecchHhccCcchheee
Confidence            2  5899999999997 8999999

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=1.1e-31  Score=260.13  Aligned_cols=205  Identities=25%  Similarity=0.369  Sum_probs=166.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|+|..                             ..++.+.+++.+...      ...|++..|.++||+++
T Consensus        27 ~~~i~l~~~~p~~-----------------------------~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~i   71 (364)
T PRK07865         27 DGIVDLSVGTPVD-----------------------------PVPPVIQEALAAAAD------APGYPTTAGTPELREAI   71 (364)
T ss_pred             CCEEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHh------hCCCCCccCCHHHHHHH
Confidence            3689999999875                             235556666554332      24799999999999999


Q ss_pred             HHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCH
Q 018147          177 AAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       177 a~~l~~~~g~~-~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      |+|+.+++|++ +++++|++|+|+++++..++..+ + ++||.|+++.|+|+.|...++..|++++.++.         +
T Consensus        72 a~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~  141 (364)
T PRK07865         72 VGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL-GPGDVVVIPELAYPTYEVGARLAGATVVRADS---------L  141 (364)
T ss_pred             HHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------h
Confidence            99999999987 99999999999999999988888 6 49999999999999999999999999988742         2


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      +++..   +      ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++.  ..+...  ....
T Consensus       142 ~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~--~~~~  208 (364)
T PRK07865        142 TELGP---Q------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILD--PRVC  208 (364)
T ss_pred             hhCCc---c------cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCcccc--cccc
Confidence            33322   2      689999999999999999999999999999999999999999999888653  222211  1110


Q ss_pred             CCCCCceEEEEeccCcCc-cccccccC
Q 018147          335 YGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ....+ ++|+++||||.| .+|+|+||
T Consensus       209 ~~~~~-~~i~~~S~SK~~~~~GlRiG~  234 (364)
T PRK07865        209 GGDHT-GLLAVHSLSKQSNLAGYRAGF  234 (364)
T ss_pred             CCccc-eEEEEeechhccCCCceeeEE
Confidence            00112 689999999999 58999998

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=1e-31  Score=262.53  Aligned_cols=208  Identities=20%  Similarity=0.283  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC---CCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD---PNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~---~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      +++.+.+.+.+.......+|++..|.++||+++++++.++.+ ...   .++|++|+|+++++.+++.+++ ++||+|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv   98 (388)
T PRK08637         21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLL   98 (388)
T ss_pred             hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhc-CCCCEEEE
Confidence            444444444432222578999999999999999999987653 233   3689999999999999999999 49999999


Q ss_pred             cCCCchHHHHHHH-HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIA-LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       221 ~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++|+|+.|...+. ..|++++.+++..+ ++++|++++++.++....  ...++++++|||||||.+++.+++++|+++|
T Consensus        99 ~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~~--~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~  175 (388)
T PRK08637         99 PDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYN--KGKVIVILNFPNNPTGYTPTEKEATAIVEAI  175 (388)
T ss_pred             cCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999998765 58999999998432 247899999998872111  1344677779999999999999999999998


Q ss_pred             HH-----cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcC-ccccccccC
Q 018147          300 KK-----EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG-RYFHFFSKW  360 (360)
Q Consensus       300 ~~-----~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~-~~g~~RvGw  360 (360)
                      ++     ++++||+||+|.++.|++. +..++.....+   .++++-+++++||||. ..+|+|+||
T Consensus       176 ~~~~~~~~~~~iI~De~Y~~l~~~~~-~~~~~~~~~~~---~~~~vi~i~~~s~SK~~~~pGlRlG~  238 (388)
T PRK08637        176 KELADAGTKVVAVVDDAYFGLFYEDS-YKESLFAALAN---LHSNILAVKLDGATKEEFVWGFRVGF  238 (388)
T ss_pred             HHHHhcCCcEEEEecccchhcccCCc-cchhhHHHhhc---ccccceEEEeccccccCCCcccceEE
Confidence            75     8999999999999999774 34443222111   1234324567799997 467999999

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=4.1e-32  Score=267.55  Aligned_cols=218  Identities=22%  Similarity=0.267  Sum_probs=164.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHH-HHHHHHcCC-CCCCCCCCCCcCcHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIP-GRATGAYSHSQGIKGLRD  174 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~-~~~~l~~~~-~~~~~~Y~~~~G~~~lr~  174 (360)
                      +++|++++|+|...                            .+|...+.+ +.+.+.... ......|++..|.++||+
T Consensus        30 ~~~i~l~~g~p~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~   81 (416)
T PRK09440         30 PGAIMLGGGNPAHI----------------------------PEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIE   81 (416)
T ss_pred             CCceeccCCCCCcc----------------------------CCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHH
Confidence            47899999999851                            123334443 444443321 013467999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc----CCCCEEEE-cCCCchHHHHHHHHcCC----eEEEeecC
Q 018147          175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SENDGILC-PIPQYPLYSASIALHGG----TLVPYYLD  245 (360)
Q Consensus       175 ~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~----~~gd~Vlv-~~P~y~~~~~~~~~~g~----~~~~v~~~  245 (360)
                      ++|+|+++++|+.+++++|++|+|+++++.+++++++.    ++||.|++ +.|+|+.|...+...|.    .+..++++
T Consensus        82 aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~  161 (416)
T PRK09440         82 ALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLP  161 (416)
T ss_pred             HHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccccccccc
Confidence            99999999999999999999999999999999999984    26899999 69999999886654442    12223343


Q ss_pred             CCC-CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          246 EAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       246 ~~~-~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      .++ +|++|+++|+  +.+      ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++...     .
T Consensus       162 ~~~~~~~~d~~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-----~  228 (416)
T PRK09440        162 EGQFKYHVDFEHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-----I  228 (416)
T ss_pred             ccccccCCCHHHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-----c
Confidence            322 4789999987  232      6899999999999999999999999999999999999999999864211     1


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+....+.    ..+ ++|+++||||...+|+|+||
T Consensus       229 ~~~~~~~~----~~~-~vI~~~SfSK~~~pGlRiG~  259 (416)
T PRK09440        229 IFSEATPL----WNP-NIILCMSLSKLGLPGVRCGI  259 (416)
T ss_pred             chhhcCcc----ccC-CeEEEecccccCCCcceEEE
Confidence            11111111    122 68999999998788999999

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=1.9e-31  Score=281.41  Aligned_cols=208  Identities=14%  Similarity=0.193  Sum_probs=170.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      ++|+.+++++.+.+...      .|  ..|.+++|+++++++.+++|+++++ ++|++|+|+++++..++.++++ +||.
T Consensus       710 ppPp~V~eAi~eal~~~------~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~-pGD~  780 (1082)
T PLN02672        710 PVPSAVKASIFESFVRQ------NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQ-EGGT  780 (1082)
T ss_pred             CCCHHHHHHHHHHHhhc------CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcC-CCCE
Confidence            67888988888776542      12  3456789999999999999998865 5899999999999999999994 9999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC-CCcccCCCHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG-NPTGQVLAEENQRAIV  296 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~-NPTG~~~~~~~l~~i~  296 (360)
                      |+++.|+|+.|...++..|++++.++++++++|.+|++.|++++++.     +.++|+++||+ ||||.+++.+++++|+
T Consensus       781 VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Ll  855 (1082)
T PLN02672        781 LCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEIL  855 (1082)
T ss_pred             EEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHH
Confidence            99999999999999999999999999987778999999999998641     34589999996 9999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCC-CCCCHHHHHHhhCCCCCCceEEEEeccCcCc-cccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++|++||++||+||+|.++.|++.. ...++......+....++.++|+++||||.| .+|+|+||
T Consensus       856 ela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGy  921 (1082)
T PLN02672        856 SVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGF  921 (1082)
T ss_pred             HHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHhee
Confidence            9999999999999999999997642 1122332222211100222689999999876 56999999

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1e-31  Score=259.73  Aligned_cols=204  Identities=17%  Similarity=0.241  Sum_probs=170.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|..                             +.++.+.+++.+.+..      ..|.+..|.+++|+++
T Consensus        29 ~~~i~l~~n~~~~-----------------------------~~~~~v~~a~~~~~~~------~~~~p~~g~~~lr~~i   73 (359)
T PRK03158         29 EKIVKLASNENPY-----------------------------GPSPKVKEAIAAHLDE------LALYPDGYAPELRTKV   73 (359)
T ss_pred             CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH------hhcCCCCcHHHHHHHH
Confidence            4788999888765                             4577788887776653      2355667899999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      .+++++|++|+|+++++..+++++++ +||.|++++|+|+.|...+...|++++.++++   ++++|+++
T Consensus        74 a~~~------~~~~~~i~~t~G~~~~l~~~~~~~~~-~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~  143 (359)
T PRK03158         74 AKHL------GVDEEQLLFGAGLDEVIQMISRALLN-PGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEA  143 (359)
T ss_pred             HHHh------CCCHHHEEECCCHHHHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHH
Confidence            9998      46789999999999999999999984 99999999999999999999999999999987   25889999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++++      ++++++++|||||||.+++.+++.+|++.|+ +|++||+||+|.++.+++.  ..+.......    
T Consensus       144 l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~~~~~~~~~~----  210 (359)
T PRK03158        144 MLKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED--YPDTLPLLEK----  210 (359)
T ss_pred             HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc--cccHHHHHHh----
Confidence            9988765      7899999999999999999999998888774 6999999999999888653  2232232221    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  ++|+++||||.|+ +|+|+||
T Consensus       211 ~~--~vi~~~S~SK~~g~~GlRiG~  233 (359)
T PRK03158        211 YE--NLIVLRTFSKAYGLAALRVGY  233 (359)
T ss_pred             cC--CEEEEEechHhhcCcchhheh
Confidence            12  5899999999998 7999999

>PRK09105 putative aminotransferase; Provisional

Probab=99.98  E-value=1.5e-31  Score=259.74  Aligned_cols=188  Identities=18%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ++|+.+++++.+.+..     ...|++.. ..+||+++++++      ++++++|++|+|+++++..++..++. +||+|
T Consensus        56 ~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai~~~~~~l~~-~gd~V  122 (370)
T PRK09105         56 GPSPAARDAAARSAAL-----SGRYDLEL-EDDLRTLFAAQE------GLPADHVMAYAGSSEPLNYAVLAFTS-PTAGL  122 (370)
T ss_pred             CCCHHHHHHHHHHHHH-----hcCCCCch-HHHHHHHHHHHh------CcChhhEEEcCChHHHHHHHHHHHcC-CCCEE
Confidence            6788899988877654     23587765 899999999986      46899999999999999999999984 99999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++++|+|+.|...++..|++++.+++++  +|.+|++++++. .+      ++++++++|||||||.+++.+++++|++.
T Consensus       123 li~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~  193 (370)
T PRK09105        123 VTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DP------NAGLIYICNPNNPTGTVTPRADIEWLLAN  193 (370)
T ss_pred             EEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHh
Confidence            9999999999999999999999999875  378999999875 22      68899999999999999999999999987


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+ ++++||+||+|.+|..  .   .+...+...    ++  ++|+++||||.|+ +|+|+||
T Consensus       194 ~~-~~~~lIvDEaY~~f~~--~---~s~~~~~~~----~~--~vi~~~SfSK~~g~~GlRiG~  244 (370)
T PRK09105        194 KP-AGSVLLVDEAYIHFSD--A---PSVVDLVAQ----RK--DLIVLRTFSKLYGMAGMRLGL  244 (370)
T ss_pred             CC-CCcEEEEECchHHhcc--C---cchHHHHhh----CC--CEEEEecccHhhcCCccceee
Confidence            64 5899999999988542  1   243343221    12  5899999999996 7999999

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.98  E-value=2.6e-31  Score=258.94  Aligned_cols=199  Identities=16%  Similarity=0.290  Sum_probs=162.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+|+.|.+.+                             .+|+.+++++.+. .     ....|++. +..+||+++
T Consensus        52 ~~~i~l~~n~~p~-----------------------------~~~~~v~~a~~~~-~-----~~~~Yp~~-~~~~lr~~i   95 (380)
T PLN03026         52 EDIVKLDANENPY-----------------------------GPPPEVLEALGNM-K-----FPYVYPDP-ESRRLRAAL   95 (380)
T ss_pred             cceEEccCCCCCC-----------------------------CCCHHHHHHHHhh-H-----hhccCCCC-CHHHHHHHH
Confidence            4789999997665                             4577777766432 1     13457664 689999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++..++ ++||+|++++|+|+.|...++..|++++.+++++  +|.+|+++
T Consensus        96 a~~~------~~~~~~I~~t~Ga~~~i~~~~~~~~-~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~--~~~~d~~~  166 (380)
T PLN03026         96 AEDS------GLESENILVGCGADELIDLLMRCVL-DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTP--DFSLDVPR  166 (380)
T ss_pred             HHHh------CcChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC--CCCcCHHH
Confidence            9998      4788999999999999999999998 4999999999999999999999999999999854  47899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++...     ++++|+++|||||||.+++.+++++|++.+    ++||+||+|.+|.+++.  .   .....    .
T Consensus       167 l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~--~---~~~~~----~  228 (380)
T PLN03026        167 IVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES--R---MKWVK----K  228 (380)
T ss_pred             HHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc--h---HHHHH----h
Confidence            99988322     799999999999999999988888888653    89999999999876431  1   12222    1


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  ++|+++||||.|+ +|+|+||
T Consensus       229 ~~--~viv~~SfSK~~glaGlRiGy  251 (380)
T PLN03026        229 YD--NLIVLRTFSKRAGLAGLRVGY  251 (380)
T ss_pred             CC--CEEEEecchHhhcCcccccee
Confidence            23  5899999999998 8999998

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=2.7e-31  Score=255.99  Aligned_cols=196  Identities=20%  Similarity=0.270  Sum_probs=162.1

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|++++|+|.+                             ++|+.+.+++.+.+.+    ....|++. |.++||+++|
T Consensus        25 ~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~----~~~~y~~~-~~~~lr~aia   70 (353)
T PRK05387         25 KLIKLNTNENPY-----------------------------PPSPKVLEAIRAALGD----DLRLYPDP-NADALRQAIA   70 (353)
T ss_pred             ceeeccCCCCCC-----------------------------CCCHHHHHHHHHHhhh----hhhcCCCC-cHHHHHHHHH
Confidence            688999998775                             4577788888776654    24578765 5699999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L  257 (360)
                      +++      .+++++|++|+|+++++.+++++++. +||+|++++|+|+.|...++.+|++++.+++++  +|++|++++
T Consensus        71 ~~~------~~~~~~I~it~G~~~al~~~~~~l~~-~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l  141 (353)
T PRK05387         71 AYY------GLDPEQVFVGNGSDEVLAHAFLAFFN-HDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDD--DFSIDVEDY  141 (353)
T ss_pred             HHh------CCCHHHEEEcCCHHHHHHHHHHHhcC-CCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHH
Confidence            998      47899999999999999999999984 999999999999999999999999999999864  378999988


Q ss_pred             HHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       258 ~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++          ..++++++|||||||.+++.+++++|+++++  ++++|+||+|.+|  .+. ...   ....    .+
T Consensus       142 ~~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~--~~~-~~~---~~~~----~~  199 (353)
T PRK05387        142 LR----------PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDF--GGE-SAI---PLID----RY  199 (353)
T ss_pred             Hh----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCccccc--CCc-chH---HHHh----hC
Confidence            63          4678999999999999999999999988653  8999999999884  332 111   2211    12


Q ss_pred             CCceEEEEeccCcCcc-ccccccC
Q 018147          338 KDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +  ++|+++||||.|+ +|+|+||
T Consensus       200 ~--~~i~~~S~SK~~~~~GlR~G~  221 (353)
T PRK05387        200 P--NLLVVQTFSKSRSLAGLRVGF  221 (353)
T ss_pred             C--CEEEEEehhHhhcchhhhcee
Confidence            2  5899999999998 8999998

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.97  E-value=7.2e-31  Score=254.01  Aligned_cols=189  Identities=18%  Similarity=0.174  Sum_probs=151.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .+|+.+++++.+.+..     ...|++.. ..+||+++|+++      ++++++|++|+|++++|..+++.+.  +||.|
T Consensus        35 ~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~------~v~~~~I~it~G~~~~i~~~~~~l~--~g~~v  100 (360)
T PRK07392         35 GPPESVIAAIQSALSA-----LRHYPDPD-YRELRLALAQHH------QLPPEWILPGNGAAELLTWAGRELA--QLRAV  100 (360)
T ss_pred             CCCHHHHHHHHHHHHH-----hhcCCCcC-HHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHHHhC--CCCeE
Confidence            5688888888776654     45688764 689999999998      5789999999999999999999874  68999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCc---CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGW---GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i  295 (360)
                      ++++|+|+.|...++.+|++++.+++++++++   ..+++.+++..       .++++++++|||||||.+++++++   
T Consensus       101 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l---  170 (360)
T PRK07392        101 YLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAI---  170 (360)
T ss_pred             EEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHH---
Confidence            99999999999999999999999999876554   34555554432       157899999999999999996655   


Q ss_pred             HHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .++|+++++ +|+||+|.+|.+++.  +.++.....    .++  ++|+++||||.|+ +|+|+||
T Consensus       171 ~~l~~~~~~-~IiDE~y~~~~~~~~--~~s~~~~~~----~~~--~vi~i~S~SK~~~l~GlRiG~  227 (360)
T PRK07392        171 LPLLEQFAL-VVVDEAFMDFLPPDA--EQSLIPCLA----EYP--NLIILRSLTKFYSLPGLRLGY  227 (360)
T ss_pred             HHHHHHCCE-EEEECchhhhccCcc--ccchHHHhh----cCC--CEEEEEechhhhcCCchheee
Confidence            455567775 666999999987653  445444332    122  5899999999998 9999999

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.97  E-value=7.6e-31  Score=255.59  Aligned_cols=207  Identities=18%  Similarity=0.260  Sum_probs=175.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+++.|.+..                             ..++.+.+++.+.+...   ....|++..|.+++|+++
T Consensus        28 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~~---~~~~y~~~~g~~~lr~~i   75 (380)
T PRK06225         28 KEMIWMGQNTNHL-----------------------------GPHEEVREAMIRCIEEG---EYCKYPPPEGFPELRELI   75 (380)
T ss_pred             CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhcC---CCCCCCCCcchHHHHHHH
Confidence            3788999887765                             45788888888877653   256799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~  255 (360)
                      |+++      ++++++|++|+|+++++..++++++. +||+|++++|+|..+...++..|++++.++++ ++++|.+|++
T Consensus        76 a~~l------~~~~~~v~~~~g~t~al~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~  148 (380)
T PRK06225         76 LKDL------GLDDDEALITAGATESLYLVMRAFLS-PGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPE  148 (380)
T ss_pred             HHhc------CCCCCcEEEeCCHHHHHHHHHHHhcC-CCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHH
Confidence            9997      46788999999999999999999984 99999999999999999999999999999975 3446899999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .+++.+++      ++++++++||+||||.+++.+++++|+++|+++|+++|+||+|.+|..+.    .+....    . 
T Consensus       149 ~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~----~-  213 (380)
T PRK06225        149 LVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH----TLAAEY----A-  213 (380)
T ss_pred             HHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC----Cchhhc----C-
Confidence            99998876      78999999999999999999999999999999999999999999865422    121111    1 


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        ++ ++|++.||||.|+ +|+|+||
T Consensus       214 --~~-~~i~~~s~SK~~g~~G~RiG~  236 (380)
T PRK06225        214 --PE-HTVTSYSFSKIFGMAGLRIGA  236 (380)
T ss_pred             --CC-CEEEEeechhhcCCccceeEE
Confidence              23 5899999999997 7999998

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=9e-31  Score=252.87  Aligned_cols=202  Identities=17%  Similarity=0.255  Sum_probs=168.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|++.+                             ++|+.+++++.+.+...   ....|++ .|.++||+++
T Consensus        26 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~---~~~~Y~~-~~~~~lr~~i   72 (356)
T PRK04870         26 TGMVKLDAMENPY-----------------------------RLPAELRAELGERLAEV---ALNRYPD-PRAAALKAAL   72 (356)
T ss_pred             CCceeCcCCCCCC-----------------------------CCCHHHHHHHHHHhhcc---ccccCCC-CCHHHHHHHH
Confidence            3788898888776                             66899999988877642   2567887 5789999999


Q ss_pred             HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+++    |  +.+ ++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...++..|++++.+++++  +|++|++
T Consensus        73 a~~~----~--~~~~~~I~~t~G~~~~i~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~  143 (356)
T PRK04870         73 RAAM----G--VPAGADVLLGNGSDELIQLLALACA-KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLP  143 (356)
T ss_pred             HHHh----C--cCCCCcEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHH
Confidence            9998    2  333 589999999999999999998 4999999999999999999999999999999874  4799999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++++++.+.     ++++|+++|||||||.+++.+++++|+++|   ++++|+||+|.+|.+..   +.   ....    
T Consensus       144 ~l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~---~~---~~~~----  205 (356)
T PRK04870        144 AMLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS---WL---PRLA----  205 (356)
T ss_pred             HHHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc---hH---HHHh----
Confidence            999998643     789999999999999999999999999998   68999999999965421   11   1111    


Q ss_pred             CCCCceEEEEeccCcCccccccccC
Q 018147          336 GEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .++  ++|+++||||...+|+|+||
T Consensus       206 ~~~--~vi~~~S~SK~~~~GlRiG~  228 (356)
T PRK04870        206 RFP--NLLVMRTVSKLGLAGLRLGY  228 (356)
T ss_pred             hCC--CEEEEecchhhhhHHHhhhh
Confidence            112  58999999994456999998

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.97  E-value=1e-30  Score=251.01  Aligned_cols=198  Identities=23%  Similarity=0.396  Sum_probs=170.5

Q ss_pred             Ccccc--CccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          129 SILDR--SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       129 ~~l~~--~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      +++++  |++|.++|+.+++++.+.+..     ...|++. ...++++++++++    |. +++++|++++|+.+.|..+
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~~-----~~rYPd~-~~~~l~~a~a~~~----~~-~~~~~V~~gnGsde~i~~l   91 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALDK-----LNRYPDP-DYRELRAALAEYY----GV-VDPENVLVGNGSDELIELL   91 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHHh-----hccCCCC-cHHHHHHHHHHHh----CC-CCcceEEEcCChHHHHHHH
Confidence            34444  445889999999998887764     6789988 4899999999998    21 6789999999999999999


Q ss_pred             HHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          207 MQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      +++++. +||+|+++.|+|..|...++..|++++.+++.+   |.+|++.+.+++.+      ++++|++||||||||..
T Consensus        92 ~~~~~~-~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i~nPNNPTG~~  161 (356)
T COG0079          92 VRAFVE-PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFLCNPNNPTGTL  161 (356)
T ss_pred             HHHhhc-CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhc------CCCEEEEeCCCCCCCCC
Confidence            999994 999999999999999999999999999999876   79999999999987      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++.++++++++.+.+ +.+||+||+|.+|.-  .    +....+.     +++ ++|+++||||+|+ +|+|+||
T Consensus       162 ~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~----~~~~l~~-----~~~-nlivlRTfSKa~gLAGlRlGy  223 (356)
T COG0079         162 LPREELRALLEALPE-GGLVVIDEAYIEFSP--E----SSLELLK-----YPP-NLIVLRTFSKAFGLAGLRVGY  223 (356)
T ss_pred             CCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--c----hhhhhcc-----CCC-CEEEEEecHHhhhcchhceee
Confidence            999999999999988 999999999999543  2    1112211     233 5899999999997 5999998

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-30  Score=250.68  Aligned_cols=189  Identities=22%  Similarity=0.404  Sum_probs=155.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .+|+.+++++.+.+...   ....|++.. ..++|+++|+++      ++++++|++|+|+++++..++.+++ ++||+|
T Consensus        35 ~~p~~~~~a~~~~~~~~---~~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~V  103 (351)
T PRK14807         35 ELPEEVIKNIQEIVKSS---QVNIYPDPT-AEKLREELARYC------SVVPTNIFVGNGSDEIIHLIMLAFI-NKGDVV  103 (351)
T ss_pred             CCCHHHHHHHHHHhhcC---cccCCCCcc-HHHHHHHHHHHh------CCCcccEEEecCHHHHHHHHHHHhc-CCCCEE
Confidence            67899999988777542   256787654 799999999997      5788999999999999999999998 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++++|+|+.|...++..|++++.+++++  +|++|++++++++++.     ++|+|+++|||||||.+++.+++.+++  
T Consensus       104 lv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~--  174 (351)
T PRK14807        104 IYPHPSFAMYSVYSKIAGAVEIPVKLKE--DYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKII--  174 (351)
T ss_pred             EEeCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHH--
Confidence            9999999999999999999999999874  3789999999988642     789999999999999999976666655  


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ++++.++|+||+|.++ + +. ...+.   ..    .++  ++|+++||||.|+ +|+|+||
T Consensus       175 -~~~~~~~ivDe~y~~~-~-~~-~~~~~---~~----~~~--~vi~~~S~SK~~~~~GlRiG~  224 (351)
T PRK14807        175 -EKSRGIVVVDEAYFEF-Y-GN-TIVDV---IN----EFE--NLIVLRTLSKAFGLAGLRVGY  224 (351)
T ss_pred             -HhCCCEEEEeCcchhh-c-cc-chHHH---hh----hCC--CEEEEecchHhcccchhceee
Confidence             4567889999999986 3 32 12221   11    112  5899999999997 9999999

>PRK03321 putative aminotransferase; Provisional

Probab=99.97  E-value=1e-30  Score=252.10  Aligned_cols=192  Identities=17%  Similarity=0.237  Sum_probs=160.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ++|+.+.+++.+.+..     ...|+ ..|..++|+++|+++      ++++++|++|+|+++++..++..++ ++||+|
T Consensus        35 ~~~~~~~~a~~~~~~~-----~~~y~-~~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~V  101 (352)
T PRK03321         35 GPLPSVRAAIARAAAG-----VNRYP-DMGAVELRAALAEHL------GVPPEHVAVGCGSVALCQQLVQATA-GPGDEV  101 (352)
T ss_pred             CCCHHHHHHHHHHHHh-----cCcCC-CCcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHHHHHHHhc-CCCCEE
Confidence            5577888888776653     44575 468999999999998      3678999999999999999999988 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..|...++..|++++.++++++  +++|++.+++++++      ++++++++|||||||.+++.+++.++++.
T Consensus       102 li~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~  173 (352)
T PRK03321        102 IFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITD------RTRLIFVCNPNNPTGTVVTPAELARFLDA  173 (352)
T ss_pred             EeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence            99999999999999999999999998754  58899999998865      78999999999999999998888888876


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      | +++++||+||+|.++.+++. ...++ ....    .++  ++|+++||||.|+ +|+|+||
T Consensus       174 ~-~~~~~ii~De~y~~~~~~~~-~~~~~-~~~~----~~~--~vi~~~S~SK~~g~~GlRiG~  227 (352)
T PRK03321        174 V-PADVLVVLDEAYVEYVRDDD-VPDGL-ELVR----DHP--NVVVLRTFSKAYGLAGLRVGY  227 (352)
T ss_pred             C-CCCeEEEEechHHHhccCcC-CCcHH-HHHh----hCC--CEEEEecchHHhhhHHHhhhh
Confidence            5 46999999999999988653 12222 2222    112  5899999999997 8999998

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=5.1e-30  Score=248.49  Aligned_cols=204  Identities=17%  Similarity=0.244  Sum_probs=169.7

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++++++.|.+..                             ++|+.+++++.+.+..     ...|++.. ..++|+++
T Consensus        32 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~y~~~~-~~~lr~~i   76 (367)
T PRK02731         32 ADIIKLASNENPL-----------------------------GPSPKAIEAIRAAADE-----LHRYPDGS-GFELKAAL   76 (367)
T ss_pred             CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hcCCCCCc-HHHHHHHH
Confidence            4789999997765                             4577788888777653     45688765 47999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++..+++ +||+|+++.|+|..|...++..|++++.++++   +|++|++.
T Consensus        77 a~~~------~~~~~~i~~t~G~~~~l~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  146 (367)
T PRK02731         77 AEKF------GVDPERIILGNGSDEILELLARAYLG-PGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDA  146 (367)
T ss_pred             HHHh------CcCHHHEEEcCCHHHHHHHHHHHhcC-CCCEEEEecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHH
Confidence            9997      46789999999999999999999984 99999999999999999889999999999883   36899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+++      ++++|+++|||||||.+++.+++++|++.|+ +|+++|+||+|.++.+++. ...++ .... .   
T Consensus       147 l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~-~~~~~-~~~~-~---  213 (367)
T PRK02731        147 MLAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD-YEDGL-ELVA-K---  213 (367)
T ss_pred             HHHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC-cccHH-HHHh-h---
Confidence            9998865      7899999999999999999999999998875 6999999999999888653 22233 2222 1   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ ++|+++||||.|+ +|+|+||
T Consensus       214 -~~-~~i~~~S~SK~~g~~G~RiG~  236 (367)
T PRK02731        214 -FP-NVVVTRTFSKAYGLAGLRVGY  236 (367)
T ss_pred             -cC-CEEEEeeehHhhcCcccceee
Confidence             12 5899999999996 7999999

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=5.2e-30  Score=245.88  Aligned_cols=184  Identities=21%  Similarity=0.330  Sum_probs=151.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+...   ....|++ .|.++||+++|+++      .+++++|++|+|+++++..++..+   +||+|
T Consensus        31 ~~~~~~~~~~~~~~~~~---~~~~Y~~-~g~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~---~gd~V   97 (337)
T PRK03967         31 DLPEELKEEIFEELKRV---PFNRYPH-ITSDPLREAIAEFY------GLDAENIAVGNGSDELISYLVKLF---EGKHI   97 (337)
T ss_pred             CCCHHHHHHHHHHhhcC---ccccCCC-CCHHHHHHHHHHHh------CcCcceEEEcCCHHHHHHHHHHHh---CCCeE
Confidence            56788998888877543   2567864 68999999999998      378999999999999999888765   69999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.|...++..|.+++.+++++  +|++|++.+++++ +      ++++++++|||||||.+++.+++.+++  
T Consensus        98 ~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~------~~~~v~~~~P~NPtG~~~~~~~l~~i~--  166 (337)
T PRK03967         98 VITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-K------NASAVFICSPNNPTGNLQPEEEILKVL--  166 (337)
T ss_pred             EEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-c------CCCEEEEeCCCCCCCCCCCHHHHHHHH--
Confidence            9999999999999999999999999875  3789999998764 2      688999999999999999977666554  


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        ++++++|+||+|.+|..  .    +......    .++  ++|+++||||.|+ +|+|+||
T Consensus       167 --~~~~~ii~De~y~~~~~--~----~~~~~~~----~~~--~vi~l~S~SK~~~l~GlRiG~  215 (337)
T PRK03967        167 --ETGKPVVLDEAYAEFSG--K----SLIGLID----EYP--NLILLRTFSKAFGLAGIRAGY  215 (337)
T ss_pred             --hcCCEEEEECchhhhcc--c----chHHHHh----hCC--CEEEEecchHhhcchhhhhee
Confidence              36999999999999642  1    1112211    112  5899999999998 9999999

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=4.6e-30  Score=239.26  Aligned_cols=196  Identities=24%  Similarity=0.458  Sum_probs=179.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHc-C
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-G  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~-g  236 (360)
                      ...|.+-.|++.+|+++|+|+.+..|  +..+|+++++++|++.+...++-.|+ +|||..++|.|+|+++..-++.. |
T Consensus       114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrdl~~rTg  192 (471)
T KOG0256|consen  114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG  192 (471)
T ss_pred             HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccccceeccC
Confidence            55688889999999999999988765  44789999999999999999999998 69999999999999998877765 8


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      +++++|.+...++|++++++||+++.++++.+.++|.|+|+||+||.|.+++++++..++++|.++|+.+|+||+|..-+
T Consensus       193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV  272 (471)
T KOG0256|consen  193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV  272 (471)
T ss_pred             ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-cccccc
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSK  359 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvG  359 (360)
                      |+.. .|.|++++...... .++ ++-++.|+||-|+ +|.|+|
T Consensus       273 F~~~-~F~Sv~ev~~~~~~-~~~-rvHivyslSKD~GlpGfRvG  313 (471)
T KOG0256|consen  273 FDKS-EFRSVLEVRKDPHL-DPD-RVHIVYSLSKDFGLPGFRVG  313 (471)
T ss_pred             cCcc-CceEHHHHhhcccc-CCC-cEEEEEEeccccCCCceEEE
Confidence            9986 79999998765532 356 8999999999997 699998

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=2.1e-30  Score=249.93  Aligned_cols=172  Identities=22%  Similarity=0.365  Sum_probs=147.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ...|++.. ..+|++++++++      ++++++|++|+|+++++..++++++. +| |.|+++.|+|+.|...++..|++
T Consensus        51 ~~~Yp~~~-~~~l~~~~a~~~------g~~~~~I~~~~Gs~e~i~~~~~~~~~-~g~~~vli~~P~y~~y~~~~~~~G~~  122 (351)
T PRK01688         51 LNRYPECQ-PKAVIENYAAYA------GVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETIGVE  122 (351)
T ss_pred             cccCCCCC-hHHHHHHHHHHh------CCCHHHEEEcCCHHHHHHHHHHHhcC-CCCCEEEEcCCCHHHHHHHHHHcCCE
Confidence            56687765 578888888876      47899999999999999999999984 87 99999999999999999999999


Q ss_pred             EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 018147          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       239 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~  318 (360)
                      ++.+++++  +|++|++++++++ +      ++++|+++|||||||.+++.+++++|++.|++ +++||+||+|.+|...
T Consensus       123 ~~~v~~~~--~~~~d~~~l~~~~-~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~  192 (351)
T PRK01688        123 IRTVPTLD--NWQLDLPAIADNL-D------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ  192 (351)
T ss_pred             EEEeecCC--CCCCCHHHHHHhc-c------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC
Confidence            99999865  3899999999877 3      68999999999999999999999999999986 6899999999996522


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                           .+......    .++  ++|+++||||.|+ +|+|+||
T Consensus       193 -----~s~~~~~~----~~~--n~iv~rSfSK~~glaGlRiGy  224 (351)
T PRK01688        193 -----ASLAGWLA----EYP--HLVILRTLSKAFALAGLRCGF  224 (351)
T ss_pred             -----CChHHHHh----hCC--CEEEEecchHhhcCHHHHHhH
Confidence                 23333333    123  5899999999998 7999998

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=7.8e-30  Score=244.49  Aligned_cols=194  Identities=20%  Similarity=0.278  Sum_probs=156.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+|++|+|.+                             ++|+.+++++.+.+...   ....|++. |.++||+++
T Consensus        19 ~~~i~l~~~~~~~-----------------------------~~p~~~~~~~~~~~~~~---~~~~Y~~~-~~~~Lr~ai   65 (335)
T PRK14808         19 RDRTYLALNENPF-----------------------------PFPEDLVDEVFRRLNSD---TLRIYYDS-PDEELIEKI   65 (335)
T ss_pred             CceeEecCCCCCC-----------------------------CCCHHHHHHHHHHhhhh---hhhcCCCC-ChHHHHHHH
Confidence            4789999998887                             66888999988766542   23447655 799999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++.+++   +++++|++|+|++++|..+++.+     |.|++++|+|+.|...++.+|++++.++++++  |.++...
T Consensus        66 a~~~~~~~---~~~~~i~it~Ga~~~i~~~~~~~-----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~  135 (335)
T PRK14808         66 LSYLDTDF---LSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN  135 (335)
T ss_pred             HHHhCCCC---CCcceEEEcCCHHHHHHHHHHHh-----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH
Confidence            99996642   78999999999999999999877     57999999999999999999999999998764  4454322


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                          + +      ++++++++|||||||.+++.+++++|+    +++++||+||+|.+|.  +. .+.+   ....    
T Consensus       136 ----~-~------~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~-~~~~---~~~~----  190 (335)
T PRK14808        136 ----V-G------EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GE-SYVD---LLKK----  190 (335)
T ss_pred             ----c-c------CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CC-chHH---HHHh----
Confidence                1 1      468999999999999999988888876    4799999999999963  22 1222   2221    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  ++|+++||||.|+ +|+|+||
T Consensus       191 ~~--~vi~~~S~SK~~~l~GlRvG~  213 (335)
T PRK14808        191 YE--NLAVIRTFSKAFSLAAQRIGY  213 (335)
T ss_pred             CC--CEEEEEechhhccCcccceEE
Confidence            12  5899999999999 8999998

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=7.8e-30  Score=245.17  Aligned_cols=202  Identities=21%  Similarity=0.356  Sum_probs=169.7

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|++..                             ..|+.+++++.+.+..     ...|++..| +++|+++
T Consensus        19 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~y~~~~~-~~lr~~i   63 (346)
T TIGR01141        19 KEVIKLNSNENPF-----------------------------GPPPKAKEALRAEADK-----LHRYPDPDP-AELKQAL   63 (346)
T ss_pred             CceEEccCCCCCC-----------------------------CCCHHHHHHHHHhHHH-----hhcCCCCCH-HHHHHHH
Confidence            5799999998876                             5688899998887643     456888776 8999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++.+++. +||+|++++|+|+.|...++..|++++.++++++  +.+|+++
T Consensus        64 a~~~------~~~~~~i~~~~G~~~~l~~~~~~l~~-~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~  134 (346)
T TIGR01141        64 ADYY------GVDPEQILLGNGSDEIIELLIRAFLE-PGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLED  134 (346)
T ss_pred             HHHh------CcChHHEEEcCCHHHHHHHHHHHhcC-CCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHH
Confidence            9998      36789999999999999999999984 9999999999999999999999999999998765  5799999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++++.+      ++++|++++|+||||.+++.+++.++++.|+ +++++|+||+|.++.+.+.  +.   .....    
T Consensus       135 l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~--~~---~~~~~----  198 (346)
T TIGR01141       135 ILVAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPS--TL---PLLAE----  198 (346)
T ss_pred             HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCcc--HH---HHHhh----
Confidence            9997654      7999999999999999999999999998887 7999999999998654321  11   22111    


Q ss_pred             CCCceEEEEeccCcCc-cccccccC
Q 018147          337 EKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                      ++  ++|+++|+||.| .+|+|+||
T Consensus       199 ~~--~~i~~~S~sK~~g~~G~r~G~  221 (346)
T TIGR01141       199 YP--NLIVLRTLSKAFGLAGLRIGY  221 (346)
T ss_pred             CC--CEEEEehhhHhhhchhhhcee
Confidence            12  479999999999 57999998

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=6.2e-30  Score=247.88  Aligned_cols=176  Identities=22%  Similarity=0.332  Sum_probs=148.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ...|++.. ..+||+++|+++      ++++++|++|+|+++++..++++++. +| |.|+++.|+|..|...++..|++
T Consensus        53 ~~~Y~~~~-~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~~-~g~~~vlv~~p~y~~~~~~~~~~g~~  124 (364)
T PRK04781         53 TRRYPDPQ-PPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALCV-PGRDAVLVTPPVFGMYAVCARLQNAP  124 (364)
T ss_pred             hccCCCCC-HHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHHcCCE
Confidence            45688765 699999999997      46899999999999999999999984 88 89999999999999999999999


Q ss_pred             EEEeecCC-CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          239 LVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       239 ~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      ++.+++++ +++|.+|++++++.+...     ++++|+++|||||||.+++.+++++|+++|+ ++++||+||+|.+|.+
T Consensus       125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~  198 (364)
T PRK04781        125 LVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSD  198 (364)
T ss_pred             EEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcC
Confidence            99999853 456788999987655332     7899999999999999999999999999886 4799999999999875


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..     +......    .++  ++|+++||||+|+ +|+|+||
T Consensus       199 ~~-----~~~~~~~----~~~--~vi~~~SfSK~~gl~GlRvGy  231 (364)
T PRK04781        199 VP-----SAVGLLA----RYD--NLAVLRTLSKAHALAAARIGS  231 (364)
T ss_pred             Cc-----chHHHHh----hCC--CEEEEecChhhcccccceeee
Confidence            32     2222222    123  5899999999998 8999998

>PRK08354 putative aminotransferase; Provisional

Probab=99.97  E-value=1.8e-29  Score=239.53  Aligned_cols=171  Identities=16%  Similarity=0.248  Sum_probs=142.5

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+++++.+.+..     ...|+.   ...+|+++++++    |     ++|++|+|+++++..++..+ . +||+|++
T Consensus        22 p~~~~~a~~~~~~~-----~~~yp~---~~~l~~~ia~~~----~-----~~I~vt~G~~~al~~~~~~~-~-~gd~vlv   82 (311)
T PRK08354         22 PEWLDEMFERAKEI-----SGRYTY---YEWLEEEFSKLF----G-----EPIVITAGITEALYLIGILA-L-RDRKVII   82 (311)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCC---hHHHHHHHHHHH----C-----CCEEECCCHHHHHHHHHHhh-C-CCCeEEE
Confidence            56677777666543     335764   467899999886    2     47999999999999888544 3 8999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|+.|...++..|++++.+        .+|++.|+++++       ++++++++|||||||.+++.+++++|+++|+
T Consensus        83 ~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~-------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~  147 (311)
T PRK08354         83 PRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE-------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVE  147 (311)
T ss_pred             eCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc-------CCCEEEEecCCCCCCCccCHHHHHHHHHHhh
Confidence            9999999999999999999765        457888887764       3678999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.+|.+++.  ..+            .+ ++|+++||||.|+ +|+|+||
T Consensus       148 ~~~~~li~De~y~~f~~~~~--~~~------------~~-~vi~~~S~SK~~~l~GlRiG~  193 (311)
T PRK08354        148 DRNALLILDEAFIDFVKKPE--SPE------------GE-NIIKLRTFTKSYGLPGIRVGY  193 (311)
T ss_pred             hcCcEEEEeCcchhcccccc--ccC------------CC-cEEEEeccHhhcCCccceeee
Confidence            99999999999999988652  111            12 6899999999998 9999998

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1.8e-29  Score=241.74  Aligned_cols=170  Identities=15%  Similarity=0.232  Sum_probs=142.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      ...|+... ..+||+++|+++      ++++++|++|+|++++|..++. ++ ++| .|++++|+|+.|...++..|+++
T Consensus        34 ~~~Yp~~~-~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~~~~-~~-~~~-~vv~~~P~y~~y~~~~~~~G~~v  103 (332)
T PRK06425         34 ISIYPEIS-YTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYRLLS-YI-NVG-NIIIVEPNFNEYKGYAFTHGIRI  103 (332)
T ss_pred             cccCcCcC-HHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHHH-Hh-CCC-cEEEeCCChHHHHHHHHHcCCeE
Confidence            45687665 799999999998      5679999999999999999997 45 476 57777999999999999999999


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      +.+|+++   +++|.+.+++    .     ++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++
T Consensus       104 ~~vp~~~---~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~  171 (332)
T PRK06425        104 SALPFNL---INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR  171 (332)
T ss_pred             EEEeCCc---ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence            9999875   3556554432    1     68999999999999999999999999999999999999999999988753


Q ss_pred             CCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       320 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .   .++.....    .++  ++|+++||||.|+ +|+|+||
T Consensus       172 ~---~~~~~~~~----~~~--~vi~~~SfSK~~~l~GlRiGy  204 (332)
T PRK06425        172 A---EEDVLLNR----SYG--NVIIGRSLTKILGIPSLRIGY  204 (332)
T ss_pred             c---hhHHHHhc----cCC--CEEEEeecHHhcCCchhhhee
Confidence            2   23333322    122  5899999999999 9999999

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.3e-29  Score=244.77  Aligned_cols=170  Identities=21%  Similarity=0.324  Sum_probs=144.4

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ...|++.. ..+||+++|+++      ++++++|++|+|++++|..++++++. +| |+|+++.|+|+.|...++..|++
T Consensus        54 ~~~Yp~~~-~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~~~~~~~~~-~g~d~vlv~~P~y~~y~~~~~~~g~~  125 (354)
T PRK04635         54 LNRYPECQ-PPELINAYSAYA------GVAPEQILTSRGADEAIELLIRAFCE-PGQDSIACFGPTYGMYAISAETFNVG  125 (354)
T ss_pred             hccCCCCC-HHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHHcCCE
Confidence            55688874 899999999987      57899999999999999999999984 88 99999999999999999999999


Q ss_pred             EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 018147          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       239 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~  318 (360)
                      ++.+|+++  +|.+|++.++. + +      ++|+|+|+|||||||.+++.+++++|++.|+  +++||+||+|.+|...
T Consensus       126 v~~v~~~~--~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~  193 (354)
T PRK04635        126 VKALPLTA--DYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE  193 (354)
T ss_pred             EEEEecCC--CCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC
Confidence            99999874  37889988863 3 3      7999999999999999999999999998876  4999999999996532


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                           .++.....    .++  ++|+++||||.|+ +|+|+||
T Consensus       194 -----~s~~~~~~----~~~--~~iv~~S~SK~~~l~GlRlG~  225 (354)
T PRK04635        194 -----YSVADLLA----SYP--NLVVLRTLSKAFALAGARCGF  225 (354)
T ss_pred             -----cchHHHHh----hCC--CEEEEechHHHhhhhHHHHhh
Confidence                 23333322    123  4799999999997 8999998

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=5.9e-29  Score=240.44  Aligned_cols=199  Identities=19%  Similarity=0.304  Sum_probs=162.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|++++|++..                             +.++.+++++.+.+..     ...|++..+ +++|+++
T Consensus        34 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-----~~~y~~~~~-~~lr~~i   78 (361)
T PRK00950         34 ESIIKLGSNENPL-----------------------------GPSPKAVEAIEKELSK-----IHRYPEPDA-PELREAL   78 (361)
T ss_pred             cceEEccCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hcCCCCCCH-HHHHHHH
Confidence            3789999987665                             4577788888776654     346877654 9999999


Q ss_pred             HHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~-t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+++      ++++++|++ |+|+++++..+++.++. +||.|+++.|+|+.|...++..|++++.++.+  ++|.+|++
T Consensus        79 a~~~------~~~~~~i~~~~~Ga~~~i~~~~~~~~~-~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~  149 (361)
T PRK00950         79 SKYT------GVPVENIIVGGDGMDEVIDTLMRTFID-PGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVD  149 (361)
T ss_pred             HHHh------CCCHHHEEEeCCCHHHHHHHHHHHhcC-CCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHH
Confidence            9997      467899999 79999999999999884 99999999999999999999999999998854  35789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .+++++++      +++++++++|+||||.+++.+++   .++|+++|+++|+||+|.++.  +. +..   .....   
T Consensus       150 ~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l---~~l~~~~~~~li~De~y~~~~--~~-~~~---~~~~~---  211 (361)
T PRK00950        150 SVLNAITE------KTKVIFLCTPNNPTGNLIPEEDI---RKILESTDALVFVDEAYVEFA--EY-DYT---PLALE---  211 (361)
T ss_pred             HHHHHhcc------CCCEEEEeCCCCCCCCCcCHHHH---HHHHHHCCcEEEEECchhhhC--cc-chH---HHHHh---
Confidence            99998865      78999999999999999996554   555677899999999999865  21 122   22221   


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|+++||||+|+ +|+|+||
T Consensus       212 --~~-~vi~~~S~SK~~g~~GlRiG~  234 (361)
T PRK00950        212 --YD-NLIIGRTFSKVFGLAGLRIGY  234 (361)
T ss_pred             --cC-CEEEEEeehHhhcCchhhcch
Confidence              12 5899999999997 8999999

>PRK07908 hypothetical protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=236.99  Aligned_cols=180  Identities=20%  Similarity=0.253  Sum_probs=146.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .+|+.+++++.+.+.+     ...|++..|..++|+++|+++      ++++++|++|+|+++++..+++ +  .+ +.|
T Consensus        35 ~~~~~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al~~~~~-l--~~-~~v   99 (349)
T PRK07908         35 TPPEWLRERLAARLGD-----LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGFALLAR-L--RP-RRA   99 (349)
T ss_pred             CCCHHHHHHHHHHhhH-----hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHh-c--CC-CeE
Confidence            5688888888887754     456999899999999999997      4689999999999999999988 4  36 467


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..+...++..|.+++.++++++  |++|++.++    +      ++++++++|||||||.+++.+++   .++
T Consensus       100 iv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l~----~------~~~~i~l~np~NPTG~~~~~~~l---~~l  164 (349)
T PRK07908        100 AVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAVP----D------DADLVVIGNPTNPTSVLHPAEQL---LAL  164 (349)
T ss_pred             EEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHhc----c------CCCEEEEcCCCCCCCCCcCHHHH---HHH
Confidence            78899999999999999999999999754  788988552    2      68899999999999999997655   455


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+ ++.++|+||+|.+++++ .  ..++... .      .+ ++|+++||||.|+ +|+|+||
T Consensus       165 ~~-~~~~iIvDe~y~~~~~~-~--~~~l~~~-~------~~-~~i~i~S~SK~~~l~GlRiG~  215 (349)
T PRK07908        165 RR-PGRILVVDEAFADAVPG-E--PESLAGD-D------LP-GVLVLRSLTKTWSLAGLRVGY  215 (349)
T ss_pred             Hh-cCCEEEEECcchhhccC-C--ccccccc-c------CC-CEEEEeecccccCCccceeee
Confidence            55 47889999999997543 2  3343321 1      22 5899999999998 8999998

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.96  E-value=3.7e-28  Score=232.46  Aligned_cols=156  Identities=21%  Similarity=0.252  Sum_probs=129.5

Q ss_pred             CCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEe
Q 018147          163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY  242 (360)
Q Consensus       163 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v  242 (360)
                      |+..  ..+||+++++++    |    +++|++|+|++++|.+++.  + .+||+|++++|+|+.|...++.+|++++.+
T Consensus        47 yp~~--~~~Lr~~ia~~~----~----~~~I~it~Gs~~al~~~~~--~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v  113 (330)
T PRK05664         47 LPET--DDGLEAAARAYY----G----APQLLPVAGSQAAIQALPR--L-RAPGRVGVLSPCYAEHAHAWRRAGHQVREL  113 (330)
T ss_pred             CCCC--hHHHHHHHHHHh----C----CCCEEECcCHHHHHHHHHH--c-cCCCEEEEcCCChHHHHHHHHHcCCeEEEe
Confidence            6553  389999999997    2    4799999999999998863  4 499999999999999999999999999998


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +++          +++++++       ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.  .   
T Consensus       114 ~~~----------~~~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~---  171 (330)
T PRK05664        114 DEA----------EVEAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P---  171 (330)
T ss_pred             chh----------hHhhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C---
Confidence            753          3444442       57889999999999999999999999999999999999999998753  2   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..++....     .++  ++|+++||||+|+ +|+|+||
T Consensus       172 ~~s~~~~~-----~~~--~vi~~~SfSK~~gl~GlRiG~  203 (330)
T PRK05664        172 QHSLAACA-----HRP--GLIVLRSFGKFFGLAGARLGF  203 (330)
T ss_pred             cccccccc-----cCC--CEEEEeeccccccCCCcceEE
Confidence            22333321     112  5899999999998 9999998

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=1.5e-27  Score=229.03  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=129.1

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEE
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV  240 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~  240 (360)
                      ..|++..  .+||+++|+++    |+. ++++|++|+|++++|..+.. ++ ++|| |+++.|+|+.|...++.+|++++
T Consensus        49 ~~Yp~~~--~~L~~~ia~~~----~~~-~~~~I~i~~Gs~e~i~~l~~-~~-~~g~-v~v~~P~y~~y~~~~~~~g~~~~  118 (339)
T PRK06959         49 RRLPEDD--DGLAACAARYY----GAP-DAAHVLPVAGSQAAIRALPA-LL-PRGR-VGIAPLAYSEYAPAFARHGHRVV  118 (339)
T ss_pred             HhCCCch--HHHHHHHHHHh----CCC-CcccEEECcCHHHHHHHHHH-hc-CCCe-EEEcCCCcHHHHHHHHHCCCEEE
Confidence            3487653  89999999987    332 35899999999999997765 45 4776 89999999999999999999999


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~  320 (360)
                      .++++.        +.    +.+      .+++++++|||||||.+++.+++++|++.|++++.++|+||+|.++.+.  
T Consensus       119 ~v~~~~--------~~----~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~--  178 (339)
T PRK06959        119 PLDEAA--------DT----LPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA--  178 (339)
T ss_pred             eecccc--------hh----ccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--
Confidence            987653        11    222      4678999999999999999999999999999999999999999997542  


Q ss_pred             CCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       321 ~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         .++....     .++  ++|+++||||.|+ +|+|+||
T Consensus       179 ---~s~~~~~-----~~~--~vi~l~SfSK~~gl~GlRiGy  209 (339)
T PRK06959        179 ---ASLAAHT-----DRP--GLVVLRSVGKFFGLAGVRAGF  209 (339)
T ss_pred             ---ccchhcc-----CCC--CEEEEecChhhcCCcchheEE
Confidence               2332221     123  4899999999998 9999998

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.95  E-value=5.1e-27  Score=224.53  Aligned_cols=164  Identities=23%  Similarity=0.283  Sum_probs=140.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      ...|++..| +++|+++++++      ++++++|++|+|+++++..+++.+  .+| .|++++|+|..|...++..|.++
T Consensus        41 ~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~~~~~~~~~~g~~~  110 (330)
T TIGR01140        41 WARYPDPEY-DELRAAAAAYY------GLPAASVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYSEYARAWRAAGHEV  110 (330)
T ss_pred             HhhCCCccH-HHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcHHHHHHHHHcCCEE
Confidence            567888776 99999999987      367899999999999999987765  477 79999999999999999999999


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      +.++         |++++++.++       +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+..
T Consensus       111 ~~~~---------d~~~l~~~~~-------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  174 (330)
T TIGR01140       111 VELP---------DLDRLPAALE-------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA  174 (330)
T ss_pred             EEeC---------CHHHHHhhcc-------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc
Confidence            9886         6888888873       57799999999999999999999999999999999999999999976531


Q ss_pred             CCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       320 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                           ++.....    . .+ ++|+++||||.|+ +|+|+||
T Consensus       175 -----~~~~~~~----~-~~-~~i~~~S~SK~~g~~G~R~G~  205 (330)
T TIGR01140       175 -----SLAPQAA----R-FP-GLVVLRSLTKFFGLAGLRLGF  205 (330)
T ss_pred             -----chhhHhc----c-CC-CEEEEEecchhhcCchhhhhh
Confidence                 2222211    1 12 5899999999998 8999999

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.94  E-value=8e-26  Score=224.54  Aligned_cols=201  Identities=19%  Similarity=0.236  Sum_probs=162.3

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCC--cCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP--QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p--~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v  144 (360)
                      .+++.....+..+++++++++         .++|+|++|+|  |+..   .                      .. ...+
T Consensus        15 ~v~~~~~~~~~~~~~~l~~~g---------~~~~~L~~g~p~~D~~t---d----------------------s~-t~a~   59 (460)
T PRK13238         15 MVEPIRLTTREERERALAEAG---------YNPFLLKSEDVFIDLLT---D----------------------SG-TGAM   59 (460)
T ss_pred             eeccccccCHHHHHHHHHHcC---------CCEEeCCCCCCCCCCCC---C----------------------CC-chhh
Confidence            455666667788888887762         48999999999  4410   0                      00 1146


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC
Q 018147          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ  224 (360)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~  224 (360)
                      .+++.+++..    +...|++..|+++||+++++++.        .++|++|+|+++|+..++.++++ ||| |++++|.
T Consensus        60 ~~a~~~a~~~----g~~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A~~~~~~all~-pGD-Vii~~p~  125 (460)
T PRK13238         60 SDRQWAAMMR----GDEAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAAEQILFPVLIK-KGD-VVPSNYH  125 (460)
T ss_pred             hHHHHHHHHh----CCcccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHHHHHHHHHhCC-CCC-EEccCCc
Confidence            6666666654    35689999999999999999982        35799999999999999999984 999 9999999


Q ss_pred             chHHHHHHHHcCCeEEEeecCCC------CCcC--CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc-cCCCHHHHHHH
Q 018147          225 YPLYSASIALHGGTLVPYYLDEA------TGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAI  295 (360)
Q Consensus       225 y~~~~~~~~~~g~~~~~v~~~~~------~~~~--~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG-~~~~~~~l~~i  295 (360)
                      |..|...++..|++++.+++++.      +.|.  +|+++|++++++...  .++++|++++|+|||| .+++.+++++|
T Consensus       126 ~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~s~~~l~~I  203 (460)
T PRK13238        126 FDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQPVSMANLRAV  203 (460)
T ss_pred             ccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCcCCCHHHHHHH
Confidence            99999999999999999998642      3455  999999999975210  2699999999999998 99999999999


Q ss_pred             HHHHHHcCCEEEEccCC--CCCccC
Q 018147          296 VDFCKKEGLVLLADEVY--QENVYV  318 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY--~~~~~~  318 (360)
                      .++|++||++||+|+++  ...+|.
T Consensus       204 ~~ia~~~gi~li~Daa~~~e~a~f~  228 (460)
T PRK13238        204 YEIAKKYGIPVVIDAARFAENAYFI  228 (460)
T ss_pred             HHHHHHcCCEEEEECcchhhhhhhh
Confidence            99999999999999965  334453

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.8e-25  Score=208.32  Aligned_cols=244  Identities=19%  Similarity=0.187  Sum_probs=192.2

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~  146 (360)
                      +++.++..+|....+.++++        |.+++|||+||-.....+++.                         --..++
T Consensus         4 ~i~~~p~DpIlgL~e~f~~D--------~R~~KVNLgIGvY~de~Gk~p-------------------------vl~aV~   50 (396)
T COG1448           4 KIEAAPADPILGLKEAFKAD--------PRPNKVNLGIGVYKDEDGKTP-------------------------VLRAVK   50 (396)
T ss_pred             ccccCCCCchhHHHHHHhcC--------CCcCeeeeeeeeeeCCCCCcc-------------------------hhHHHH
Confidence            45566677888888888876        457999999998877544443                         223555


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC---CCCCCE--EEcCChHHHHHHHHHHHcc-CCCCEEEE
Q 018147          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDI--FLTDGASPAVHMMMQLLIR-SENDGILC  220 (360)
Q Consensus       147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~---~~~~~I--~~t~Ga~~al~~~~~~l~~-~~gd~Vlv  220 (360)
                      ++.+.+.+..  ....|.+..|.+++++++++++   +|.+   +..++|  +=|.|+|.||.+....+.. .+..+|++
T Consensus        51 ~Ae~~l~~~~--~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwi  125 (396)
T COG1448          51 KAEKRLLEQE--KTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWI  125 (396)
T ss_pred             HHHHHhhccc--cccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEe
Confidence            5555555544  3778999999999999999999   5544   455555  5588999999998887753 36678999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC--CCCcccCCCHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P--~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++|+|+++..+++..|.++..||..+..+-.+|.+.+.+.++.+     ...-|+|.|+  |||||..++.++|++|+++
T Consensus       126 s~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a-----~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~  200 (396)
T COG1448         126 SDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA-----PEGSVVLLHGCCHNPTGIDPTEEQWQELADL  200 (396)
T ss_pred             CCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhC-----CCCCEEEEecCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999877666689999999999875     3334555544  9999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      .++++++.+.|-+|++|.-+-+++...++.++..+      ..++++.||||.|+- |-|||
T Consensus       201 ~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~------~~~lva~S~SKnfgLYgERVG  256 (396)
T COG1448         201 IKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVG------PELLVASSFSKNFGLYGERVG  256 (396)
T ss_pred             HHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhC------CcEEEEehhhhhhhhhhhccc
Confidence            99999999999999996655444555565555432      248999999999986 88888

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.93  E-value=1.1e-25  Score=211.61  Aligned_cols=198  Identities=23%  Similarity=0.263  Sum_probs=162.1

Q ss_pred             CCCCCCCCcCcHHHHHHHHHHHH-hhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCC
Q 018147          159 ATGAYSHSQGIKGLRDTIAAGIE-ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG  237 (360)
Q Consensus       159 ~~~~Y~~~~G~~~lr~~ia~~l~-~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~  237 (360)
                      ...+|+++.|+++|+..+.++.. ..+......-+|++|+|.+.++..+++.++ ++||.|++...+|+.....++..|+
T Consensus        92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~s~~a~gv  170 (472)
T KOG0634|consen   92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQSMEALGV  170 (472)
T ss_pred             hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHHhccccCc
Confidence            36789999999999999999665 333333444489999999999999999999 5999999999999999999999999


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhc---CCCccEEEEe-cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~---g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      ++++|+++++   ++++|.|++.+....-.   .+++++++.+ +-+||||..++.+..++|.++|++|+++||+||.|.
T Consensus       171 ~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy  247 (472)
T KOG0634|consen  171 KIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYY  247 (472)
T ss_pred             eEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccc
Confidence            9999999877   89999999998764322   3456666655 569999999999999999999999999999999999


Q ss_pred             CCccCC-------CCCCCCHHHHH----HhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          314 ENVYVP-------EKKFHSFKKVS----RSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       314 ~~~~~~-------~~~~~s~~~~~----~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      -+.|+.       +.+..+-..+.    +.....+-++|||...||||.+++|+|+||
T Consensus       248 ~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~  305 (472)
T KOG0634|consen  248 FLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGW  305 (472)
T ss_pred             eeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEE
Confidence            998873       11233322222    222223346699999999999999999999

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.92  E-value=5.1e-24  Score=203.53  Aligned_cols=204  Identities=28%  Similarity=0.437  Sum_probs=162.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..++.++++..+ .....  ....|.+..|..++++.+++++...+|....++++++++|+++++..++.++.. +||+|
T Consensus        11 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-~g~~v   86 (350)
T cd00609          11 PPPPEVLEALAA-AALRA--GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN-PGDEV   86 (350)
T ss_pred             CCCHHHHHHHHH-Hhhcc--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC-CCCEE
Confidence            345555555444 11111  366788999999999999999999888777788999999999999999999984 89999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..+...++..|.+++.++.+++..+..+.+.++....+      ++++|++++|+||||.+++.+++++|+++
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~  160 (350)
T cd00609          87 LVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAEL  160 (350)
T ss_pred             EEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            999999999999999999999999998765443333555544433      79999999999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++|+++|+|++|+.+.+.+..  .....   ...  ..+ ..++++|++|.++ +|.|+||
T Consensus       161 ~~~~~~~~ivD~a~~~~~~~~~~--~~~~~---~~~--~~~-~~~~~~s~~K~~~~~g~~~G~  215 (350)
T cd00609         161 AKKHGILIISDEAYAELVYDGEP--PPALA---LLD--AYE-RVIVLRSFSKTFGLPGLRIGY  215 (350)
T ss_pred             HHhCCeEEEEecchhhceeCCcc--ccccc---CcC--ccC-cEEEEeecccccCCcccceEE
Confidence            99999999999999998876542  11000   011  122 4799999999998 8999997

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.89  E-value=1.5e-21  Score=191.78  Aligned_cols=183  Identities=15%  Similarity=0.238  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhcCCCCCCcccceeccCCCC--cCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCC
Q 018147           79 IAQRLQQELQTNPGSHSFDEILYCNIGNP--QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (360)
Q Consensus        79 ~a~~~~~~~~~~~~~~p~~~vi~l~iG~p--~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~  156 (360)
                      |++++++.+         .+++.|..|+|  |++.                        .. + -..+.+++.+.+... 
T Consensus         2 r~~~l~~~g---------~n~~~l~~~~v~iDllt------------------------ds-~-t~ams~~~~~a~~~g-   45 (431)
T cd00617           2 RERALKEAG---------YNVFLLRSEDVYIDLLT------------------------DS-G-TGAMSDYQWAAMMLG-   45 (431)
T ss_pred             hHHHHHHcC---------CCEEeCCCCCcCCCCCC------------------------CC-C-cHHHHHHHHHHHHhC-
Confidence            556666652         48999999999  5421                        00 0 124455555555542 


Q ss_pred             CCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcC
Q 018147          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHG  236 (360)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g  236 (360)
                         ...|+++.|.++|++++++++.        .+++++|+|+++|+.+++.++++ |||.| +++|.|..|...+...|
T Consensus        46 ---d~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~~-pGD~V-~~~~~f~~~~~~i~~~G  112 (431)
T cd00617          46 ---DEAYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILLK-PGRTV-PSNMHFDTTRGHIEANG  112 (431)
T ss_pred             ---CCccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhCC-CCCEE-ccCCcccchHHHHHhCC
Confidence               4469999999999999999982        36799999999999999999985 99988 68999999999999999


Q ss_pred             CeEEEeecCCCCC------cC--CCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          237 GTLVPYYLDEATG------WG--LETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       237 ~~~~~v~~~~~~~------~~--~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      ++++.++++++.+      |.  +|+++|++++++..  ..++++|++++|+||+ |.+++.+++++|.++|++||++||
T Consensus       113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~--~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li  190 (431)
T cd00617         113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG--AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVV  190 (431)
T ss_pred             CEeEEEecccccccccccCCCCCcCHHHHHHHhCccc--CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            9999999976532      44  99999999997520  0148899999999998 999999999999999999999999


Q ss_pred             EccCC
Q 018147          308 ADEVY  312 (360)
Q Consensus       308 ~DeaY  312 (360)
                      +|++.
T Consensus       191 ~DaAr  195 (431)
T cd00617         191 LDAAR  195 (431)
T ss_pred             EEchh
Confidence            99994

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.88  E-value=2.6e-21  Score=189.06  Aligned_cols=198  Identities=13%  Similarity=0.067  Sum_probs=147.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..++.+++++.+.+..... ....|....|..++++++++++.+.+|.   +++|++|+| ++++..++.+++ ++||.|
T Consensus        56 ~~~~~i~~a~~~~~~~~~~-~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~~~~~~~l~-~~gd~v  129 (397)
T PRK06939         56 ANHPELIAAAKAALDSHGF-GMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDANGGLFETLL-GKEDAI  129 (397)
T ss_pred             CCCHHHHHHHHHHHHHcCC-CCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHHHHHHHHhC-CCCCEE
Confidence            3478888888888766321 2234444678999999999999988773   377888888 678888888888 599999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++++|+|+.+...++.+|++++.++.       .|++++++.+++....+.++++|++.+.+||||...+   +++|+++
T Consensus       130 i~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~l  199 (397)
T PRK06939        130 ISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDL  199 (397)
T ss_pred             EEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHH
Confidence            99999999999999999999887753       4789999888754333335777776677999998655   8999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |+++|++||+||+|....+...  ....... ..+.   ++ ..|+++||||.|+| .|+||
T Consensus       200 a~~~~~~li~De~~~~g~~~~~--~~~~~~~-~~~~---~~-~~i~~~S~sK~~~g-~r~G~  253 (397)
T PRK06939        200 ADKYDALVMVDDSHAVGFVGEN--GRGTVEH-FGVM---DR-VDIITGTLGKALGG-ASGGY  253 (397)
T ss_pred             HHHhCCEEEEECcccccCcCCC--CCCHHHH-cCCC---CC-CcEEEEECHHHhCc-cCceE
Confidence            9999999999999963222221  1111111 1111   22 35899999999965 48998

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.88  E-value=6.2e-21  Score=186.49  Aligned_cols=191  Identities=18%  Similarity=0.157  Sum_probs=143.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCc---Cc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQ---GI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~---G~----~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      ..++++++++.+.+.+..    .+|+.+.   |.    .++++++|+++    |    .+++++++|+++|+..++.+++
T Consensus        52 ~~~~~v~~~~~~~~~~~~----~~~~~s~~~~G~~~~~~~le~~ia~~~----g----~~~~ii~~~~~~a~~~~~~~l~  119 (393)
T TIGR01822        52 SSHPDLIQAAKDALDEHG----FGMSSVRFICGTQDIHKELEAKIAAFL----G----TEDTILYASCFDANGGLFETLL  119 (393)
T ss_pred             CCCHHHHHHHHHHHHHhC----CCCCCcCcccCChHHHHHHHHHHHHHh----C----CCcEEEECchHHHHHHHHHHhC
Confidence            457889999988887632    2455555   75    77888888877    2    2567888899999999999998


Q ss_pred             cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                       ++||.|+++.|.|+.+...++..+.+.+.++       .+|+++|++++++....+.++++|++.+++||||.+.+   
T Consensus       120 -~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---  188 (393)
T TIGR01822       120 -GAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---  188 (393)
T ss_pred             -CCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---
Confidence             4999999999999999999888888775543       46899999999864333346778888889999999987   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++|+++|++||+++|+||+|....++..  ..+..... ++   .++ ..+++.|+||.++| .|+||
T Consensus       189 l~~i~~la~~~~~~li~De~~~~g~~~~~--~~~~~~~~-~~---~~~-~di~~~s~sK~l~g-~r~G~  249 (393)
T TIGR01822       189 LDEICDLADKYDALVMVDECHATGFLGPT--GRGSHELC-GV---MGR-VDIITGTLGKALGG-ASGGF  249 (393)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccCcCCC--CCchHHhc-CC---CCC-CeEEEEEChHHhhC-CCcEE
Confidence            89999999999999999999964333221  22222211 11   123 35889999999864 68997

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-21  Score=174.94  Aligned_cols=242  Identities=20%  Similarity=0.288  Sum_probs=163.8

Q ss_pred             cchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHH
Q 018147           70 YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAW  149 (360)
Q Consensus        70 ~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~  149 (360)
                      ++.+|+-.++-.-+.+.+.+-...+..+.+|.++.|||-..+.. -++|++.                          ..
T Consensus         3 fs~fGdkft~~sGi~~lMdDl~d~Lrt~g~imLggGNPa~iPem-~~~f~~~--------------------------~a   55 (417)
T COG3977           3 FSLFGDKFTRHSGITQLMDDLNDGLRTPGAIMLGGGNPARIPEM-DDYFQDL--------------------------LA   55 (417)
T ss_pred             hhhhhHHhhhhhhHHHHHHHHHhhccCCCceeeCCCCcccChhH-HHHHHHH--------------------------HH
Confidence            44455544443333322222222344567999999999973210 1111111                          12


Q ss_pred             HHHHcC-CCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC--CC--CEEEEc-CC
Q 018147          150 QILDQI-PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--EN--DGILCP-IP  223 (360)
Q Consensus       150 ~~l~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~--~g--d~Vlv~-~P  223 (360)
                      +.+.+. .......|..++|...|.++++++++++|||++++++|.+|+|++.+.+.++..|...  .|  ..|++| .|
T Consensus        56 emla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaP  135 (417)
T COG3977          56 EMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAP  135 (417)
T ss_pred             HHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccCh
Confidence            222222 1123678999999999999999999999999999999999999999999999988531  23  346665 48


Q ss_pred             CchHHHHHHHHcCCeEEE----eecCCCC--CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          224 QYPLYSASIALHGGTLVP----YYLDEAT--GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       224 ~y~~~~~~~~~~g~~~~~----v~~~~~~--~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      .|.+|..+.-.-. ..+.    +.+.+.+  .|.+|.++|.-  .+      .+.+|+++.|.||||.+++.+|+.+|.+
T Consensus       136 eYiGY~d~~l~~d-~fVs~kP~iel~~~g~FKY~vDF~~l~i--~e------~~g~ic~SRPtNPTGNVlTdeE~~klda  206 (417)
T COG3977         136 EYIGYADAGLEED-LFVSAKPNIELLPAGQFKYHVDFEHLHI--GE------STGAICVSRPTNPTGNVLTDEELAKLDA  206 (417)
T ss_pred             hhccccccccCcc-ceeeccCCcccccccceeeccCHHHccc--cc------ccceEEecCCCCCCCCcccHHHHHHHHH
Confidence            9988876432211 1222    2233333  45678877753  23      6889999999999999999999999999


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHH--HHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFK--KVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      +|++||+.+|+|.+|+.       +|+.+.  ...+-.    .+ ++|.|.|+||.=-+|.|+|
T Consensus       207 lA~~~giPliIDnAYg~-------PFP~iifsd~~~~w----~~-NiilC~SLSK~GLPG~R~G  258 (417)
T COG3977         207 LARQHGIPLIIDNAYGV-------PFPGIIFSDATPLW----NE-NIILCMSLSKLGLPGSRCG  258 (417)
T ss_pred             HhhhcCCcEEEecccCC-------CCCceecccccccC----CC-CEEEEeehhhcCCCCccee
Confidence            99999999999999986       222211  111111    12 6899999999877888887

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.86  E-value=4.7e-20  Score=178.50  Aligned_cols=195  Identities=14%  Similarity=0.073  Sum_probs=146.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCC-C---CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC
Q 018147          139 LFSADSIERAWQILDQIPGRAT-G---AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~-~---~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~  214 (360)
                      .+.+++++++.+.......... .   .+....-..++++.+|+++    |  +  +++++|+|+++++..++..++. +
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~--~~i~~~~g~t~al~~~l~~~~~-~   82 (361)
T cd06452          12 RLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----G--M--DEARVTPGAREGKFAVMHSLCE-K   82 (361)
T ss_pred             CCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----C--C--ceEEEeCCHHHHHHHHHHHhcC-C
Confidence            5577888887776632211001 1   1111122567888888876    4  3  7899999999999999999984 9


Q ss_pred             CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc-CCCccEEEEecCCCCcccCCCHHHHH
Q 018147          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      ||+|+++.+.|......++..|++++.++.+.+++|.+|++++++++++..+. +.++++|++++|+||||.+.+   ++
T Consensus        83 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~  159 (361)
T cd06452          83 GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AK  159 (361)
T ss_pred             CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HH
Confidence            99999999988776677888999999999987656899999999999753221 236889999999999998866   88


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|+++|+++|+++|+|++|.....     ..+..    +++      ..+++.|+||.++++.|+||
T Consensus       160 ~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~----~~~------~d~~~~s~~K~l~~~~~~G~  211 (361)
T cd06452         160 KIAKVCHEYGVPLLLNGAYTVGRM-----PVSGK----ELG------ADFIVGSGHKSMAASAPIGV  211 (361)
T ss_pred             HHHHHHHHcCCeEEEECCcccCCc-----CCCHH----HcC------CCEEEecCCccccCCCCeEE
Confidence            999999999999999999984211     11111    111      24899999999988889997

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.86  E-value=3.2e-20  Score=181.88  Aligned_cols=187  Identities=16%  Similarity=0.095  Sum_probs=140.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCC-------CcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHH
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSH-------SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~-------~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga~~al~~~~~~l  210 (360)
                      ..|+.+++++.+.+.....  ...+..       ...+.++|+.+|+++      ++ ++++|++|+|++++++.++.++
T Consensus        27 ~~p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~~t~g~t~~l~~~~~~~   98 (398)
T TIGR03392        27 LKPQAVIDATQQFYRLSSG--TVHRSQHQQAQSLTARYELARQQVARFL------NAPDAENIVWTRGTTESINLVAQSY   98 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEEeCChHHHHHHHHHHh
Confidence            4678888888887764321  111221       123566888888887      33 4789999999999999999988


Q ss_pred             c---cCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          211 I---RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       211 ~---~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      .   .++||+|++++|.|+.    +...++..|++++.++++.+  +.+|++++++++++      ++++|++++|+|||
T Consensus        99 ~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~t  170 (398)
T TIGR03392        99 ARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD--LLPDIRQLPELLTP------RTRILALGQMSNVT  170 (398)
T ss_pred             hhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHHhcc------CceEEEEECccccc
Confidence            3   1489999999999865    55667888999999998754  57899999999976      79999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+++   +++|+++|+++|+++|+|++|....+.     ..+.    .+.   .|   +++.|.+|.+++. ++||
T Consensus       171 G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~-----~~~~----~~~---~d---~~~~s~~K~~gp~-G~G~  228 (398)
T TIGR03392       171 GGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP-----PDVQ----ALD---ID---FYAFSGHKLYGPT-GIGV  228 (398)
T ss_pred             cccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----CChh----hcC---CC---EEEEecccccCCC-ceEE
Confidence            99998   888999999999999999999753221     1111    111   23   6677888977652 4675

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.86  E-value=4.7e-20  Score=179.73  Aligned_cols=195  Identities=14%  Similarity=0.125  Sum_probs=147.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..++.+++++.+.+.+... ....|....|..++++++++++.+.+|.   ++.|++++|+ +++..++..++ ++||.|
T Consensus        47 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG~-~a~~~a~~~~~-~~gd~v  120 (385)
T TIGR01825        47 ADHPRLKEAAAQAIQQYGV-GAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSGF-NTNQGVLSALL-RKGDIV  120 (385)
T ss_pred             CCCHHHHHHHHHHHHHcCC-CCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcHH-HHHHHHHHHhC-CCCCEE
Confidence            3578888888888775432 2456888899999999999999988772   4668888885 56667888888 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.+...+...|.+++.++       .+|++++++.+++..  .+++++|++.+++||||.+.+   +++|.++
T Consensus       121 i~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~tG~~~~---~~~i~~l  188 (385)
T TIGR01825       121 LSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENP--SYGKKLIVTDGVFSMDGDVAP---LPEIVEL  188 (385)
T ss_pred             EEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhc--cCCCeEEEEecCCcCCCCccC---HHHHHHH
Confidence            9999999999888888888877653       568888988886531  125778888888999999988   8899999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |++||+++|+||+|..+.++... .......  .+   .++ .++++.||||+|++  +.||
T Consensus       189 ~~~~~~~li~De~~~~~~~~~~~-~~~~~~~--~~---~~~-~~i~~~s~sK~~~~--~gG~  241 (385)
T TIGR01825       189 AERYGAVTYVDDAHGSGVMGEAG-RGTVHHF--GL---EDK-VDIQVGTLSKAIGV--VGGY  241 (385)
T ss_pred             HHHhCCEEEEECcccccCcCCCC-CccHhhc--CC---CcC-CcEEEEeccHHhhc--CCCE
Confidence            99999999999999887665321 1111111  11   133 57899999999853  3355

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.85  E-value=2.5e-20  Score=183.96  Aligned_cols=168  Identities=20%  Similarity=0.219  Sum_probs=131.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~  235 (360)
                      ...|+.+. ...|++.+|++.    |    .+++++++|+++|+..++.+++. +||.|+++.|.|+.|...+    ...
T Consensus        77 y~R~~~Pt-~~~Le~~lA~le----g----~~~~iv~~sG~~Ai~~~l~al~~-~Gd~Vv~~~p~Y~~~~~~~~~~l~~~  146 (427)
T PRK07049         77 YSRFNHPN-SEIVEDRLAVYE----G----AESAALFSSGMSAIATTLLAFVR-PGDVILHSQPLYGGTETLLAKTFRNF  146 (427)
T ss_pred             ccCCCCcC-HHHHHHHHHHHh----C----CCcEEEEccHHHHHHHHHHHHhC-CCCEEEEcCCCcccHHHHHHHHHHhc
Confidence            35677665 689999999986    2    45788899999999999999995 9999999999999997654    557


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH---cCCEEEEccCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK---EGLVLLADEVY  312 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~---~~i~lI~DeaY  312 (360)
                      |++++.++.      ..|.+.+++++.+..++ .++|+|++++|+||||.+++.+++.+|++.|++   +++++|+||+|
T Consensus       147 Gi~~v~~~~------~~d~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety  219 (427)
T PRK07049        147 GVGAVGFAD------GLSEAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL  219 (427)
T ss_pred             CcEEEEEeC------CCCHHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence            988777752      34678888877643221 268999999999999999998888888888654   68999999998


Q ss_pred             CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc--ccccccC
Q 018147          313 QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY--FHFFSKW  360 (360)
Q Consensus       313 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~--g~~RvGw  360 (360)
                      ....+..     ++    . .    .  ..|+++||||.|+  +|+|+||
T Consensus       220 ~~~~~~~-----pl----~-~----g--~divv~S~SK~~gG~~glr~G~  253 (427)
T PRK07049        220 LGPVFQK-----PL----E-H----G--ADLSVYSLTKYVGGHSDLVAGA  253 (427)
T ss_pred             cccccCC-----cc----c-c----C--CCEEEEcCceeecCCCCcEEEE
Confidence            7643321     11    1 1    1  2488899999999  5999997

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=1.2e-19  Score=174.64  Aligned_cols=187  Identities=16%  Similarity=0.155  Sum_probs=134.2

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcC----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      .|+++++++.+.+.+.+. ....|....|    ..++++++++++    |   .+++|++++|+.+.+ .++..++ .+|
T Consensus        31 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~----~---~~~~i~~~~G~~~~~-~~l~~~~-~~g  100 (360)
T TIGR00858        31 SHPEVIQAAQQGAEQYGA-GSTASRLVSGNSPLHEELEEELAEWK----G---TEAALLFSSGYLANV-GVISALV-GKG  100 (360)
T ss_pred             CCHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHh----C---CCCEEEECchHHHHH-HHHHHhC-CCC
Confidence            368899999888876332 1222332333    345666666665    3   356788888865555 5677777 499


Q ss_pred             CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHH
Q 018147          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i  295 (360)
                      |.|+++.|+|+.+...++..|++++.++.       +|++.|++.++..  .+.++++|++.+++||||...+   +++|
T Consensus       101 d~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~--~~~~~~~v~~~~~~~~~G~~~~---~~~i  168 (360)
T TIGR00858       101 DLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKN--RGERRKLIVTDGVFSMDGDIAP---LPQL  168 (360)
T ss_pred             CEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHc--ccCCCeEEEEeCCccCCCCCcC---HHHH
Confidence            99999999999999999999999887752       5789999988652  1124677888899999998887   8899


Q ss_pred             HHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .++|+++|+++|+||+|..+.++..  ..+..... .+.   ++.++|+++||||+|++
T Consensus       169 ~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~---~~~~~i~i~s~sK~~~~  221 (360)
T TIGR00858       169 VALAERYGAWLMVDDAHGTGVLGED--GRGTLEHF-GLK---PEPVDIQVGTLSKALGS  221 (360)
T ss_pred             HHHHHHcCcEEEEECcccccCcCCC--CCchHHhc-CCC---ccCCcEEEEechhhhhc
Confidence            9999999999999999987666542  22222221 111   12257999999999876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.85  E-value=1.3e-21  Score=173.33  Aligned_cols=172  Identities=21%  Similarity=0.384  Sum_probs=141.4

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCeEE
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGTLV  240 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~~~  240 (360)
                      .|+..+ ...++.+++.-      .+.++++|++..|+.+.|..+++..| .|| ++|+...|+|..|.--+...++.++
T Consensus        65 ~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iNd~eVv  136 (375)
T KOG0633|consen   65 VYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAINDAEVV  136 (375)
T ss_pred             ccCCcc-cchhhhhcccC------CCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecCCceEE
Confidence            455544 45566555442      36889999999999999999999999 598 8999999999999988888999999


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~  320 (360)
                      .+|+..+  |.+|.|.+.+.++..    ..+|.+++++|+||||..+..+++++|.+.-.  |.++++||+|-+|  .+.
T Consensus       137 kvpl~pd--F~lnvdai~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidF--sg~  206 (375)
T KOG0633|consen  137 KVPLNPD--FSLNVDAIAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDF--SGV  206 (375)
T ss_pred             EecCCCC--ccccHHHHHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEee--ccc
Confidence            9999874  999999999988752    36899999999999999999999999987543  7899999999995  442


Q ss_pred             CCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       321 ~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      .   |-.+++.    .|||  +|++++|||+|+- |+||||
T Consensus       207 ~---S~~~lV~----kYpN--LivlqTlSKsfGLAGiRvG~  238 (375)
T KOG0633|consen  207 E---SRMKLVK----KYPN--LIVLQTLSKSFGLAGIRVGY  238 (375)
T ss_pred             c---ccchHhH----hCCc--eeehhhhhhhcCcceeEeec
Confidence            1   2223333    4676  7999999999985 999997

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.85  E-value=9.5e-20  Score=178.74  Aligned_cols=184  Identities=16%  Similarity=0.173  Sum_probs=138.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCC-CCCCCCC----CcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHHc-
Q 018147          139 LFSADSIERAWQILDQIPGR-ATGAYSH----SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLI-  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~-~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga~~al~~~~~~l~-  211 (360)
                      ..|..+++++.+.+.+.... ....+..    ...+.++|+.+|+++    |  + ++++|++|+|++++++.+++++. 
T Consensus        30 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~i~~~~~~t~~i~~~~~~~~~  103 (401)
T PRK10874         30 LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----N--APDAKNIVWTRGTTESINLVAQSYAR  103 (401)
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----C--CCCCCEEEEECCHHHHHHHHHHHhhh
Confidence            45778888888877653210 0011111    122557777777776    3  4 68899999999999999999983 


Q ss_pred             --cCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          212 --RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       212 --~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                        ..+||+|++++|.|+.    +...++..|++++.++++.  ++.+|++++++++++      ++++|++++|+||||.
T Consensus       104 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~  175 (401)
T PRK10874        104 PRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGG  175 (401)
T ss_pred             ccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccC
Confidence              1489999999999864    5566788899999999865  357899999999976      7999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +++   +++|+++|+++|+++|+|++|....+.     ..+.    .++   .|   +++.|++|.|++
T Consensus       176 ~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~-----~~~~----~~~---~d---~~~~s~~K~~gp  226 (401)
T PRK10874        176 CPD---LARAITLAHQAGMVVMVDGAQGAVHFP-----ADVQ----ALD---ID---FYAFSGHKLYGP  226 (401)
T ss_pred             cCC---HHHHHHHHHHcCCEEEEECCccccccc-----CCch----hcC---CC---EEEEecccccCC
Confidence            998   889999999999999999999642221     1111    111   23   677999997765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.83  E-value=2.7e-19  Score=175.20  Aligned_cols=188  Identities=17%  Similarity=0.203  Sum_probs=138.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---c
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---I  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l---~  211 (360)
                      .+|+.+++++.+.+..........|....+.    .++|+.+++++    |  +++++|++++|+++++..++.++   .
T Consensus        28 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~----~--~~~~~v~~~~~~t~~l~~~~~~~~~~~  101 (397)
T TIGR01976        28 QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL----N--ADPPEVVFGANATSLTFLLSRAISRRW  101 (397)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEeCCHHHHHHHHHHHHHhcC
Confidence            4688899988888765422112346554443    46666666665    4  45567999999999998888776   4


Q ss_pred             cCCCCEEEEcCCCchHH----HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                       ++||+|+++.|.|+..    ...++..|++++.++++++ ++.+|++++++++++      ++++|++++|+||||.+.
T Consensus       102 -~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~  173 (397)
T TIGR01976       102 -GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIV  173 (397)
T ss_pred             -CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccC
Confidence             5999999999988654    3456778999999998753 357899999999876      789999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   +++|+++|+++|+++|+|+++..    +.. ...+.    .++   .|   +++.|++|.++  .|+||
T Consensus       174 ~---~~~i~~~~~~~~~~~ivD~a~~~----~~~-~~~~~----~~~---~d---~~~~s~~K~~g--~~~G~  226 (397)
T TIGR01976       174 D---LAAITELVHAAGALVVVDAVHYA----PHG-LIDVQ----ATG---AD---FLTCSAYKFFG--PHMGI  226 (397)
T ss_pred             C---HHHHHHHHHHcCCEEEEehhhhc----ccc-CCCHH----HcC---CC---EEEEechhhcC--CceEE
Confidence            8   89999999999999999999743    111 11111    111   23   55689999874  46775

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.83  E-value=6.6e-19  Score=172.13  Aligned_cols=196  Identities=13%  Similarity=0.095  Sum_probs=149.5

Q ss_pred             CCCCHHHHHHHHHHHHcCCC----CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          138 GLFSADSIERAWQILDQIPG----RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~----~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      .++++.+++++.+.......    .+...+.....+.++|+.+|+++    |    .+++++++|+++++..++.+++. 
T Consensus        30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g----~~~~~~~~g~t~a~~~al~~l~~-  100 (387)
T PRK09331         30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----G----MDEARVTHGAREGKFAVMHSLCK-  100 (387)
T ss_pred             CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhcC-
Confidence            35688888888887744221    01222333335788888898887    3    25688899999999999999984 


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh-cCCCccEEEEecCCCCcccCCCHHHH
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA-KGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~-~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                      +||.|+++.+.|......++..|++++.++.+.+.++.+|++.+++++++..+ .++++++|++++|+||||.+.+   +
T Consensus       101 ~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l  177 (387)
T PRK09331        101 KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---A  177 (387)
T ss_pred             CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---H
Confidence            99999999999888777788999999999984333568999999999975321 2246899999999999998877   9


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|+++|+++|+++|+|++|..-..     ..+..    .++   .|   +++.|++|.++++.|+||
T Consensus       178 ~~I~~la~~~g~~livD~a~~~g~~-----~~~~~----~~g---~D---~~~~s~~K~l~~~~~~G~  230 (387)
T PRK09331        178 KKVAKVAHEYGIPFLLNGAYTVGRM-----PVDGK----KLG---AD---FIVGSGHKSMAASAPSGV  230 (387)
T ss_pred             HHHHHHHHHcCCEEEEECCcccCCc-----CCCHH----HcC---CC---EEEeeCcccccCCCCEEE
Confidence            9999999999999999999985221     11111    111   13   788999999988888886

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.83  E-value=1.1e-18  Score=169.64  Aligned_cols=165  Identities=15%  Similarity=0.118  Sum_probs=130.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      ...+++.+|+++    |    .+.+++++|+++++..++.+++ ++||.|++..+.|......++..|++++.++.++++
T Consensus        53 ~~~~~e~lA~~~----g----~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~  123 (370)
T TIGR02539        53 IHDFLEDLAEFL----G----MDEARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHP  123 (370)
T ss_pred             HHHHHHHHHHHh----C----CCceEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcc
Confidence            456777777776    3    2467779999999999999998 499999999888655446788999999999987666


Q ss_pred             CcCCCHHHHHHHHHHHHhc-CCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHH
Q 018147          249 GWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (360)
Q Consensus       249 ~~~~d~~~L~~~i~~~~~~-g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~  327 (360)
                      +|.+|+++|++++++..++ ..++++|++++|+||||...+   +++|+++|+++|+++|+||+|......     .+..
T Consensus       124 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~-----~~~~  195 (370)
T TIGR02539       124 EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP-----VSAK  195 (370)
T ss_pred             cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC-----CCHH
Confidence            7899999999999753221 125789999999999999888   888899999999999999999974221     1111


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .    .   ..|   ++++|+||.|+++.|+||
T Consensus       196 ~----~---~~d---i~v~s~sK~~~~~g~~G~  218 (370)
T TIGR02539       196 E----I---GAD---FIVGSGHKSMAASGPCGV  218 (370)
T ss_pred             H----c---CCC---EEEeeCcccccCCCCEEE
Confidence            1    1   123   667999999998888997

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.83  E-value=3.9e-19  Score=174.02  Aligned_cols=200  Identities=17%  Similarity=0.119  Sum_probs=146.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-----CcCcHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH-----SQGIKG  171 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~-----~~G~~~  171 (360)
                      ..++++++|+|+.                             ..|+.+.+.+.+.  .    ....|.+     ..|.++
T Consensus        20 ~~~~~l~~g~~~~-----------------------------~~p~~~~~~~~~~--~----~~~~~~~~~~~~~~g~~~   64 (398)
T cd00613          20 QSMSFLGSGTYKH-----------------------------NPPAVIKRNILEN--E----FYTAYTPYQPEISQGRLQ   64 (398)
T ss_pred             cCcccccccccCC-----------------------------cCcHHHHHHhccc--c----CcccCCCCChhhhhhHHH
Confidence            3679999999997                             2344444334333  2    1334555     789999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCCh-HHHHHHHHHHHccCC--CCEEEEcCCCchHHHHHHHHcC----CeEEEeec
Q 018147          172 LRDTIAAGIEARDGFPADPNDIFLTDGA-SPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASIALHG----GTLVPYYL  244 (360)
Q Consensus       172 lr~~ia~~l~~~~g~~~~~~~I~~t~Ga-~~al~~~~~~l~~~~--gd~Vlv~~P~y~~~~~~~~~~g----~~~~~v~~  244 (360)
                      +++++++++.+.+|.  +.+++++++++ +++...++.++. .+  ||+|++++|.|+.+...+...|    ++++.+++
T Consensus        65 ~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~~~~~~~~~-~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~  141 (398)
T cd00613          65 ALFELQTMLCELTGM--DVANASLQDEATAAAEAAGLAAIR-AYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS  141 (398)
T ss_pred             HHHHHHHHHHHHHCC--CccceeccCchHHHHHHHHHHHHh-cccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc
Confidence            999999999998874  44577777644 455455555555 35  9999999999999998888887    89998888


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +++  +.+|++++++++.+      ++++|++++|+ |||.+.  +.+++|.++|+++|+++|+|+++........    
T Consensus       142 ~~~--~~~d~~~l~~~i~~------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~~----  206 (398)
T cd00613         142 DEG--GTVDLEALKEEVSE------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLKP----  206 (398)
T ss_pred             CCC--CCcCHHHHHHhcCC------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCCCC----
Confidence            643  47899999998865      79999999985 899984  4569999999999999999998754221111    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCcc----ccccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRY----FHFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~----g~~RvGw  360 (360)
                       .    ..++   .   -+++.|++|.+.    ||.|+||
T Consensus       207 -~----~~~~---~---d~~~~s~~K~~~p~g~Ggp~~g~  235 (398)
T cd00613         207 -P----GEYG---A---DIVVGNLQKTGVPHGGGGPGAGF  235 (398)
T ss_pred             -h----HHcC---C---CEEEeeccccCCCCCCCCCceeE
Confidence             0    0111   2   388999999873    3678876

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.83  E-value=1.4e-19  Score=173.10  Aligned_cols=190  Identities=15%  Similarity=0.111  Sum_probs=140.2

Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      ++.++|+.+++++.+.+..     ...|.+..+..++++.+++++    |    ++++++++|+++++..+++.++ ++|
T Consensus         6 ~~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~-~~g   71 (338)
T cd06502           6 TVTGPTPEMLEAMAAANVG-----DDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHT-QPG   71 (338)
T ss_pred             cCCCCCHHHHHHHHhcccC-----CcccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhc-CCC
Confidence            3678899999988775432     235666666777887777776    3    5678888888899999999998 599


Q ss_pred             CEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc-CCCccEEEEecCCCCcccCCCHHH
Q 018147          216 DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      |+|+++.|+|..+..   .....|++++.++.+.   +.+|+++|++++++..++ ..++++|+++||+|| |.+++.++
T Consensus        72 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~  147 (338)
T cd06502          72 GSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDE  147 (338)
T ss_pred             CeEEEecCcceeeecCCcHHHHcCceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHH
Confidence            999999999876432   3455899999998743   579999999998742111 125889999999997 67779999


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +++|+++|+++|+++|+||+|..+.....  ..++.....     ..+   +++.|+||.|+
T Consensus       148 l~~i~~~~~~~~~~livDea~~~~~~~~~--~~~~~~~~~-----~~d---~~~~s~sK~~~  199 (338)
T cd06502         148 LKAISALAKENGLPLHLDGARLANAAAAL--GVALKTYKS-----GVD---SVSFCLSKGGG  199 (338)
T ss_pred             HHHHHHHHHHcCCeEeechHHHHHHHHhc--CCCHHHHHh-----cCC---EEEEeccccCC
Confidence            99999999999999999999865322111  112222211     123   45779999986

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.83  E-value=9.9e-20  Score=174.16  Aligned_cols=165  Identities=16%  Similarity=0.162  Sum_probs=124.0

Q ss_pred             ccccCcc--CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 018147          130 ILDRSET--QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM  207 (360)
Q Consensus       130 ~l~~~~~--~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~  207 (360)
                      |+|+++|  +. +++.+++++.+...     ....|++..+..+|++++|+++    |  +  +.+++++|+++++.+++
T Consensus         1 ~~~~~~~~~~~-p~~~~~~a~~~~~~-----~~~~Y~~~~~~~~L~~~la~~~----g--~--~~~~v~~~g~~a~~~~l   66 (333)
T PRK10534          1 MIDLRSDTVTR-PSRAMLEAMMAAPV-----GDDVYGDDPTVNALQDYAAELS----G--K--EAALFLPTGTQANLVAL   66 (333)
T ss_pred             CcccccccCCC-CCHHHHHHHHhccC-----CCcccCCCHHHHHHHHHHHHHh----C--C--CeEEEeCchHHHHHHHH
Confidence            4566666  55 78888888765332     2457877777999999999997    3  2  44567777888888888


Q ss_pred             HHHccCCCCEEEEcCCCchH-HHHH-HHHcC-CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          208 QLLIRSENDGILCPIPQYPL-YSAS-IALHG-GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       208 ~~l~~~~gd~Vlv~~P~y~~-~~~~-~~~~g-~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      ..++ .+||+|+++.|+|.. |... ....| ++++.+++++  +|.+|+++|++++++...++.++++|+++||+  ||
T Consensus        67 ~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G  141 (333)
T PRK10534         67 LSHC-ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG  141 (333)
T ss_pred             HHhc-CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence            8887 499999999888853 4321 23444 6777777653  48999999999886421111247899999776  59


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+++.+++++|+++|+++++++|+||+|.
T Consensus       142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~  170 (333)
T PRK10534        142 KVLPREYLKQAWEFTRERNLALHVDGARI  170 (333)
T ss_pred             eecCHHHHHHHHHHHHHcCCeEEeeHHHH
Confidence            99999999999999999999999999986

>PLN02721 threonine aldolase

Probab=99.82  E-value=2.6e-19  Score=172.28  Aligned_cols=160  Identities=11%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      +++.+.+++.+.  .... ....|.+.  ..+|++++++++..        +.++++++++++...++..++..+||+|+
T Consensus        18 ~~~~~~~a~~~~--~~~~-~~~~~~~~--~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl   84 (353)
T PLN02721         18 PTDAMRAAMANA--EVDD-DVLGYDPT--ALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVHCDVRGSEVI   84 (353)
T ss_pred             CCHHHHHHHHhc--cCCC-cccCCCHH--HHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHHccCCCCeEE
Confidence            355566665432  1111 23334333  78999999999832        23455555566666777776622899999


Q ss_pred             EcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC-CCccEEEEecC-CCCcccCCCHHHHHH
Q 018147          220 CPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG-ITVRALVVINP-GNPTGQVLAEENQRA  294 (360)
Q Consensus       220 v~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g-~~~k~iil~~P-~NPTG~~~~~~~l~~  294 (360)
                      +++|+|.....   .+...|++++.++.+++  +.+|++.+++++++...++ +++++|+++++ +||||.+++.+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~  162 (353)
T PLN02721         85 LGDNSHIHLYENGGISTLGGVHPRTVKNNED--GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDK  162 (353)
T ss_pred             EcCccceehhcccchhhhcCceeEecCCCcC--CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHH
Confidence            99999854333   56778999999987643  5789999999997421111 36889999864 889999999999999


Q ss_pred             HHHHHHHcCCEEEEccCCCC
Q 018147          295 IVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~  314 (360)
                      |+++|+++|+++|+|++|..
T Consensus       163 l~~l~~~~g~~livD~a~~~  182 (353)
T PLN02721        163 VGELAKRHGLKLHIDGARIF  182 (353)
T ss_pred             HHHHHHHcCCEEEEEchhhh
Confidence            99999999999999999853

>PLN02242 methionine gamma-lyase

Probab=99.82  E-value=2e-19  Score=177.05  Aligned_cols=151  Identities=18%  Similarity=0.162  Sum_probs=121.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH-----HHcCCeEEEee
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-----ALHGGTLVPYY  243 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~-----~~~g~~~~~v~  243 (360)
                      ..+|++.+|+++    |    .+.+++++|+++|+..++.++++ +||+|+++.|.|+.+...+     +..|++++.++
T Consensus        78 ~~~LE~~lA~l~----g----~~~~l~~~sG~~Ai~~al~al~~-~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d  148 (418)
T PLN02242         78 VLNLGRQMAALE----G----TEAAYCTASGMSAISSVLLQLCS-SGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD  148 (418)
T ss_pred             HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhC-CCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence            677888888876    2    35678999999999999999985 9999999999999887665     34687777665


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .       .|++++++++++.     ++|+|++++|+||||.+.+   +++|+++|+++|++||+|++|..+.+...   
T Consensus       149 ~-------~d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~---  210 (418)
T PLN02242        149 I-------TDLEAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA---  210 (418)
T ss_pred             C-------CCHHHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH---
Confidence            3       2789999988651     3899999999999999987   89999999999999999999987655221   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccc-ccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFF-SKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~R-vGw  360 (360)
                              .++      ..|+++||||.|+| |.| .||
T Consensus       211 --------~~g------~divv~S~SK~l~g~g~~~gG~  235 (418)
T PLN02242        211 --------RLG------ADVVVHSISKFISGGADIIAGA  235 (418)
T ss_pred             --------HcC------CcEEEEeCccccCCCCCceEEE
Confidence                    111      24889999999976 555 465

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.82  E-value=7.5e-19  Score=172.75  Aligned_cols=198  Identities=12%  Similarity=0.080  Sum_probs=142.6

Q ss_pred             ccccCcc-CCCCCHHHHHHHHHHHHcCCCC-CCCCCCC----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          130 ILDRSET-QGLFSADSIERAWQILDQIPGR-ATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~-~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      ++.|+.+ ....|..+++++.+.+...... ....|..    ..-..++|+.+|+++    |. .++++|++|+|+++++
T Consensus        24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~-~~~~~v~~t~g~t~~l   98 (406)
T PRK09295         24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NA-RSAEELVFVRGTTEGI   98 (406)
T ss_pred             eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----Cc-CCCCeEEEeCCHHHHH
Confidence            3444444 3346788889888877653210 0111210    122557777888776    31 2578999999999999


Q ss_pred             HHHHHHH----ccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          204 HMMMQLL----IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       204 ~~~~~~l----~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      +.+++++    + .+||+|+++.+.|++    |...++..|++++.++++.+  +.+|+++|++++++      ++++|+
T Consensus        99 ~~~~~~~~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~------~t~lv~  169 (406)
T PRK09295         99 NLVANSWGNSNV-RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPALFDE------RTRLLA  169 (406)
T ss_pred             HHHHHHhhhhcC-CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCCCHHHHHHhcCC------CcEEEE
Confidence            9998874    4 489999999988763    45566778999999998754  47899999999876      799999


Q ss_pred             EecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       276 l~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      +++|+||||.+++   +++|+++|+++|+++|+|++|.....     ...+.    .++   .|   +++.|++|.+++.
T Consensus       170 l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~----~~~---~D---~~~~s~~K~~gp~  231 (406)
T PRK09295        170 ITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH-----PVDVQ----ALD---CD---FYVFSGHKLYGPT  231 (406)
T ss_pred             EecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc-----ccCch----hcC---CC---EEEeehhhccCCC
Confidence            9999999999999   88899999999999999999975322     11111    111   23   7789999976652


Q ss_pred             ccccC
Q 018147          356 FFSKW  360 (360)
Q Consensus       356 ~RvGw  360 (360)
                       .+||
T Consensus       232 -G~G~  235 (406)
T PRK09295        232 -GIGI  235 (406)
T ss_pred             -CcEE
Confidence             3665

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.82  E-value=1e-18  Score=167.73  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=135.6

Q ss_pred             ccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          130 ILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      +++|+.+   ...-|+++++++.+.+++... ....|....|....++.+.+.+.+.+|.   ++ .++++++++++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~-~iv~~sg~~a~~~~   77 (349)
T cd06454           3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGV-GAGGSRLISGTSDLHEELEEELAEFHGK---EA-ALVFSSGYAANDGV   77 (349)
T ss_pred             ceecccCCccccCCCHHHHHHHHHHHHHhCC-CCCCcCeecCCchHHHHHHHHHHHHhCC---CC-EEEeccHHHHHHHH
Confidence            3455555   223368899999998876322 1223333334444444444444444442   23 45555557788888


Q ss_pred             HHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          207 MQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      +.+++ ++||.|+++.|+|+.+...++..|++++.++       .+|.+.+++.+++.. ...+++++++++|+||||..
T Consensus        78 ~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~  148 (349)
T cd06454          78 LSTLA-GKGDLIISDSLNHASIIDGIRLSGAKKRIFK-------HNDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDI  148 (349)
T ss_pred             HHHhc-CCCCEEEEehhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCc
Confidence            88888 4999999999999999888899999998775       247788888887532 11256788888999999998


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .+   +++|+++|+++|+++|+|++|....+...  ...+... . ..   .....+++.|+||.|++
T Consensus       149 ~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~--~~~~~~~-~-~~---~~~~~i~~~s~sK~~~~  206 (349)
T cd06454         149 AP---LPELVDLAKKYGAILFVDEAHSVGVYGPH--GRGVEEF-G-GL---TDDVDIIMGTLGKAFGA  206 (349)
T ss_pred             cC---HHHHHHHHHHcCCEEEEEccccccccCCC--CCChhhh-c-cc---cccCcEEEeechhhhcc
Confidence            77   88999999999999999999975433321  1111111 1 00   11146899999999875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.82  E-value=7.6e-19  Score=168.54  Aligned_cols=187  Identities=14%  Similarity=0.106  Sum_probs=148.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC-----------C--CCEEEEcCCCch
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----------E--NDGILCPIPQYP  226 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~-----------~--gd~Vlv~~P~y~  226 (360)
                      ...|....+..++++++++++.+.+|.+.+++++++|+|+++++..++.+++..           +  ++.|+++.+.|.
T Consensus        27 ~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~  106 (345)
T cd06450          27 DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV  106 (345)
T ss_pred             CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence            345888889999999999999999887655678999999999999999887520           2  347889999999


Q ss_pred             HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEE
Q 018147          227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL  306 (360)
Q Consensus       227 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~l  306 (360)
                      .+...++..|.+++.++++++  +.+|+++|++++++...++.+++++++++|+||||.+.+   +++|+++|+++|+++
T Consensus       107 ~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l  181 (345)
T cd06450         107 SVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWL  181 (345)
T ss_pred             HHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeE
Confidence            999999989999999998765  389999999999876566667888999999999999866   899999999999999


Q ss_pred             EEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       307 I~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|++|..+.+.... ....   ..    ..+++ ..+..|++|.+++..++||
T Consensus       182 ~vD~a~~~~~~~~~~-~~~~---~~----~~~~~-d~~~~s~~K~l~~p~g~g~  226 (345)
T cd06450         182 HVDAAYGGFLLPFPE-PRHL---DF----GIERV-DSISVDPHKYGLVPLGCSA  226 (345)
T ss_pred             EEechhhHHHhhChh-hHHH---hc----Ccccc-CEEEEchhHhhCCCcchHH
Confidence            999999987653221 1000   01    11221 2456799998877777775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=99.81  E-value=1.5e-19  Score=165.75  Aligned_cols=254  Identities=17%  Similarity=0.160  Sum_probs=190.3

Q ss_pred             ccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        60 ~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      .++.....++.++-.+|....+.++++        |..+.|||++|.......+|.                       .
T Consensus        23 ~~~s~~s~V~maPpDpILGVTeAfk~D--------~n~~KiNLgvGaYRdd~gKp~-----------------------v   71 (427)
T KOG1411|consen   23 RASSWWSHVEMAPPDPILGVTEAFKKD--------PNPKKINLGVGAYRDDNGKPY-----------------------V   71 (427)
T ss_pred             cccchhhcCCCCCCCCcccHHHHHhcC--------CCcceeeecccceecCCCCee-----------------------e
Confidence            334455566666677888888888776        557899999999999777776                       2


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHcc-CCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~~l~~-~~gd  216 (360)
                      +|  +++++.+.+....  ....|.|..|++++.+..++++.......+..++|+.  |-++|.++......+.. -++.
T Consensus        72 L~--~VrkAE~ql~~~~--ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~  147 (427)
T KOG1411|consen   72 LP--SVRKAEQQLASLS--LDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSR  147 (427)
T ss_pred             eH--HHHHHHHHHhhhc--ccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhcccc
Confidence            22  5555555444433  3568999999999999999999543333355556655  34667777766555432 3789


Q ss_pred             EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC--CCCcccCCCHHHHHH
Q 018147          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRA  294 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P--~NPTG~~~~~~~l~~  294 (360)
                      .|++|+|+|.++.+.+..+|+.+..|......+-++|.+.+.+.+.++     ....++|.+.  |||||+..+.++|++
T Consensus       148 ~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~k  222 (427)
T KOG1411|consen  148 DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEK  222 (427)
T ss_pred             ceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHH
Confidence            999999999999999999999998887766667799999998888774     4445666654  999999999999999


Q ss_pred             HHHHHHHcCCEEEEccCCCCCccCCC-CCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          295 IVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      |.++.++++.+.+.|.+|++|..++- .+..+++-++.      .+..+++++||.|.++- |=|||
T Consensus       223 i~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~------~g~~~~laQSyAKNMGLYgERvG  283 (427)
T KOG1411|consen  223 ISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE------DGHEILLAQSYAKNMGLYGERVG  283 (427)
T ss_pred             HHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH------cCCceEeehhhhhhcchhhhccc
Confidence            99999999999999999999877652 23444544444      23478999999997653 44555

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.81  E-value=4.9e-19  Score=173.65  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=125.1

Q ss_pred             CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEE
Q 018147          165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLV  240 (360)
Q Consensus       165 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~  240 (360)
                      +..+..+|++++|+++    |    .+++++++|+++|+..++..++. +||+|+++.|.|+.+..    .++..|++++
T Consensus        62 ~~p~~~~Le~~iA~~~----g----~~~~l~~~sG~~Ai~~al~~ll~-~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~  132 (400)
T PRK06234         62 GNPTSTEVENKLALLE----G----GEAAVVAASGMGAISSSLWSALK-AGDHVVASDTLYGCTFALLNHGLTRYGVEVT  132 (400)
T ss_pred             CCccHHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHhC-CCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence            4556899999999997    2    24678899999999999988884 99999999998876543    4567899998


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccC
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYV  318 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~--~i~lI~DeaY~~~~~~  318 (360)
                      .++..       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++  |+++|+|++|....+.
T Consensus       133 ~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        133 FVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             EECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            88643       78999999876      7999999999999999998   88889999997  9999999999886543


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                      ..     +     +.+      .-|+++|+||.++| |.|+ ||
T Consensus       197 ~~-----l-----~~g------~Divv~S~sK~l~g~g~~~gG~  224 (400)
T PRK06234        197 RP-----L-----QLG------ADVVVHSATKYLNGHGDVIAGF  224 (400)
T ss_pred             Cc-----h-----hhC------CcEEEeeccccccCCCCceeEE
Confidence            21     1     111      23899999999976 6554 76

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.81  E-value=8e-19  Score=159.04  Aligned_cols=226  Identities=15%  Similarity=0.170  Sum_probs=173.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +..+||++|.......+|+                       .+|  ++++....+.+... ..+.|.|..|++.++.+.
T Consensus        30 p~KvnL~igAYRtd~g~PW-----------------------vLP--vVk~~e~~i~~d~s-~NHEYLpi~Gl~~F~~~A   83 (410)
T KOG1412|consen   30 PVKVNLGIGAYRTDDGKPW-----------------------VLP--VVKKAEKKIANDQS-LNHEYLPILGLPTFTKAA   83 (410)
T ss_pred             cceeecccceEEcCCCCee-----------------------Eeh--hhhhhhhhccCchh-ccchhccccCchhhhhhh
Confidence            5789999999998777776                       334  66666555555443 577899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcC-CeEEEeecCCCCCcCC
Q 018147          177 AAGIEARDGFPADPNDIF--LTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHG-GTLVPYYLDEATGWGL  252 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~--~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g-~~~~~v~~~~~~~~~~  252 (360)
                      ++.+.......+..++++  -+-++++|+.+....|.. -+..+|++..|+|.++..+++..| .++..|+.-+.++-.+
T Consensus        84 ~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~  163 (410)
T KOG1412|consen   84 TELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCV  163 (410)
T ss_pred             HHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCcee
Confidence            999866655556677653  345667777766554421 145679999999999999999999 6677787766666689


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEEecC--CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCCCCHHHH
Q 018147          253 ETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKV  329 (360)
Q Consensus       253 d~~~L~~~i~~~~~~g~~~k~iil~~P--~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s~~~~  329 (360)
                      |++.+...|+.+     ..+.|++.+.  |||||...++|+|.+|+++.++++++.+.|-+|++|..++. .+...++.+
T Consensus       164 d~e~~Lsdl~~A-----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~f  238 (410)
T KOG1412|consen  164 DLEGFLSDLESA-----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYF  238 (410)
T ss_pred             cHHHHHHHHhhC-----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHH
Confidence            999999999885     5566666643  99999999999999999999999999999999999877663 234445555


Q ss_pred             HHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      +.      .+..+++++||+|.|+- +=|+|
T Consensus       239 V~------~g~e~fv~QSFaKNfGlYneRvG  263 (410)
T KOG1412|consen  239 VE------QGFELFVCQSFAKNFGLYNERVG  263 (410)
T ss_pred             Hh------cCCeEEEEhhhhhhccccccccc
Confidence            44      23368999999998764 55666

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.81  E-value=6.9e-19  Score=171.46  Aligned_cols=159  Identities=15%  Similarity=0.180  Sum_probs=123.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----c
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----H  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~  235 (360)
                      ...|+.+. ...|++.+|++.    |    .+++++++|+++|+..++.+++. +||+|+++.|+|..+...+..    .
T Consensus        45 Y~R~~~p~-~~~le~~lA~l~----g----~~~v~~~~gg~~Ai~~~l~all~-~GD~Vl~~~p~y~~~~~~~~~~~~~~  114 (382)
T TIGR02080        45 YSRSGNPT-RDLLQQALAELE----G----GAGAVVTNTGMSAIHLVTTALLG-PDDLLVAPHDCYGGTYRLLNALAKKG  114 (382)
T ss_pred             ccCCCCch-HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHcC-CCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence            45666655 678888888876    2    46899999999999999999984 999999999999865443322    2


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.++..++       ..|++++++++++      ++|+|++++|+||||.+++   +++|+++|+++|+++|+|++|...
T Consensus       115 ~~~v~~~d-------~~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~  178 (382)
T TIGR02080       115 CFRVLFVD-------QGDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSP  178 (382)
T ss_pred             CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence            44554432       2378999998876      7999999999999999998   788899999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      .+..     ++     .++   .+   |+++|+||.++|  |+|.||
T Consensus       179 ~~~~-----pl-----~~g---aD---ivv~S~sK~l~G~~~~~~G~  209 (382)
T TIGR02080       179 ALQN-----PL-----ALG---AD---LVLHSCTKYLNGHSDVIAGA  209 (382)
T ss_pred             ccCC-----ch-----hhC---CC---EEEeecceeccCCCCceeEE
Confidence            4321     11     111   23   788999998864  778875

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.80  E-value=2.7e-18  Score=168.43  Aligned_cols=184  Identities=15%  Similarity=0.126  Sum_probs=136.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC-CCCCCC----CCcCcHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHc-
Q 018147          139 LFSADSIERAWQILDQIPGR-ATGAYS----HSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI-  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~-~~~~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~-~~~I~~t~Ga~~al~~~~~~l~-  211 (360)
                      .+|..+++++.+.+.+.... ....+.    ...+++++|+.+++++      +++ +++|++|+|+++++..++.++. 
T Consensus        29 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------~~~~~~~v~~~~g~t~~l~~~~~~~~~  102 (403)
T TIGR01979        29 QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI------NAASDEEIVFTRGTTESINLVAYSWGD  102 (403)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CcCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            45788888887776643210 011111    1224668888888887      334 6799999999999999988751 


Q ss_pred             --cCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          212 --RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       212 --~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                        .++||+|+++++.|+.    +...++..|++++.++++++  +.+|++++++++++      +++++++++|+||||.
T Consensus       103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~  174 (403)
T TIGR01979       103 SNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDD--GTLDLDDLEKLLTE------KTKLVAITHVSNVLGT  174 (403)
T ss_pred             hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCC--CCCCHHHHHHHhcc------CCeEEEEEcccccccc
Confidence              1489999999998765    34566678999999998743  57899999999976      7999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +++   +++|.++|+++|+++|+|++|.....     ...+.    .++   .   .+++.|++|.+++
T Consensus       175 ~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~-----~~~~~----~~~---~---d~~~~s~~K~~gp  225 (403)
T TIGR01979       175 VNP---VEEIAKLAHQVGAKVLVDGAQAVPHM-----PVDVQ----ALD---C---DFYVFSGHKMYGP  225 (403)
T ss_pred             cCC---HHHHHHHHHHcCCEEEEEchhhcCcc-----ccCcc----ccC---C---CEEEEecccccCC
Confidence            999   88899999999999999999975321     11111    111   2   3788999997764

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.80  E-value=1.3e-18  Score=170.12  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=121.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~  244 (360)
                      ..++++.+|+++    |    .+++++++|+++|+..++.+++. +||+|+++.+.|.+..    ..+...|++++.+++
T Consensus        63 ~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~~-~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~  133 (390)
T PRK08133         63 VTMFQERLAALE----G----AEACVATASGMAAILAVVMALLQ-AGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL  133 (390)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence            667888888776    3    35789999999999999998884 9999999999887543    455678999998875


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +       |++++++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+..     
T Consensus       134 ~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~-----  192 (390)
T PRK08133        134 T-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ-----  192 (390)
T ss_pred             C-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            3       68889988876      7999999999999999997   8999999999999999999997643321     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      ++     .++   .|   ++++|+||.++| |.|+||
T Consensus       193 pl-----~~g---~D---ivv~S~sK~~~g~g~~~GG  218 (390)
T PRK08133        193 PL-----KLG---AD---VVIHSATKYLDGQGRVLGG  218 (390)
T ss_pred             ch-----hhC---Cc---EEEeecceeecCCcceEeE
Confidence            11     111   23   789999999976 777753

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.80  E-value=1.4e-18  Score=168.65  Aligned_cols=189  Identities=16%  Similarity=0.145  Sum_probs=139.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCC--CcCcHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHcc
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSH--SQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~-~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      .+|+.+++++.+.+.+....   +...+++  ..+..++|+.+++++    |  ++ +++|++|+|+++++..++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~g~t~a~~~~~~~l~~   83 (373)
T cd06453          10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----N--APSPDEIIFTRNTTEAINLVAYGLGR   83 (373)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            45788888888877543210   0111111  234566777777776    3  34 67999999999999999999874


Q ss_pred             C--CCCEEEEcCCCchHH----HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          213 S--ENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       213 ~--~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      .  +||+|+++++.|+..    ...++..|++++.++++.+  +.+|++++++.+.+      ++++|++++|+||||.+
T Consensus        84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~  155 (373)
T cd06453          84 ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDD--GQLDLEALEKLLTE------RTKLVAVTHVSNVLGTI  155 (373)
T ss_pred             cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCC--CCcCHHHHHHHhcC------CceEEEEeCcccccCCc
Confidence            3  899999999999874    3345577999999998743  57999999999976      78999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+   +++|+++|+++|+++|+|++|......     ..+.    ..+   .|   +++.|+.|.+++ .++||
T Consensus       156 ~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~----~~~---~d---~~~~s~~K~~~~-~g~g~  210 (373)
T cd06453         156 NP---VKEIGEIAHEAGVPVLVDGAQSAGHMP-----VDVQ----DLG---CD---FLAFSGHKMLGP-TGIGV  210 (373)
T ss_pred             CC---HHHHHHHHHHcCCEEEEEhhhhcCcee-----eecc----ccC---CC---EEEeccccccCC-CCcEE
Confidence            98   788999999999999999998742211     1111    111   23   556788899987 77775

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.80  E-value=3.6e-18  Score=168.84  Aligned_cols=188  Identities=16%  Similarity=0.160  Sum_probs=137.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC-CC-CCCCC---CcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHH--
Q 018147          139 LFSADSIERAWQILDQIPGR-AT-GAYSH---SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL--  210 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~-~~-~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga~~al~~~~~~l--  210 (360)
                      ..|..+++++.+.+.+.... .. ..|..   ...+.++|+.+++++      ++ ++++|++|+|++++++.+++.+  
T Consensus        43 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~~t~g~t~al~~i~~~~~~  116 (424)
T PLN02855         43 QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI------NASTSREIVFTRNATEAINLVAYTWGL  116 (424)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc------CCCCCCEEEEeCCHHHHHHHHHHHhhh
Confidence            35788888888877654220 01 11111   123468888888887      33 3579999999999999998864  


Q ss_pred             --ccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          211 --IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       211 --~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                        + .+||+|+++.+.|+.    |...++..|++++.++++.+.  .+|++++++++++      ++++|++++|+||||
T Consensus       117 ~~~-~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~--~~~~~~l~~~i~~------~t~lv~i~~~~n~tG  187 (424)
T PLN02855        117 ANL-KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDE--VLDVEQLKELLSE------KTKLVATHHVSNVLG  187 (424)
T ss_pred             hcC-CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCC--CcCHHHHHHHhcc------CceEEEEeCcccccc
Confidence              4 489999999997764    455667789999999987553  6899999999976      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+++   +++|+++|+++|+++|+|++|..    +.. ...+.    .++   .|   +++.|++|.+++. .+||
T Consensus       188 ~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~-~~~~~----~~~---~d---~~~~s~~K~~gp~-G~G~  244 (424)
T PLN02855        188 SILP---VEDIVHWAHAVGAKVLVDACQSV----PHM-PVDVQ----TLG---AD---FLVASSHKMCGPT-GIGF  244 (424)
T ss_pred             ccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCc-CCCch----hcC---CC---EEEeecccccCCC-ccEE
Confidence            9999   78889999999999999999953    111 11111    111   23   6799999966542 4665

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.79  E-value=2.7e-18  Score=165.61  Aligned_cols=193  Identities=14%  Similarity=0.069  Sum_probs=139.3

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      +|..++...|+.+++++.+.+.      ...|.   +..++.+.+.+.+.+.+|.+ .++.+++++|+++++..++.+++
T Consensus         2 ~~~~~~~~~~~~v~~a~~~~~~------~~~~~---~~~~~~~~~~~~la~~~g~~-~~~~~~~~~~~t~al~~~~~~~~   71 (356)
T cd06451           2 LLIPGPSNVPPRVLKAMNRPML------GHRSP---EFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLL   71 (356)
T ss_pred             cccCCCcCCCHHHHHHhCCCcc------CCCCH---HHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcHHHHHHHHHHhC
Confidence            4566677788888888754321      11222   23333444444444444531 23457888889999999999998


Q ss_pred             cCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          212 RSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      . +||+|+++.++|..  +...++..|++++.++.+++  +.+|++++++.+++.     ++++|++++|+||||.+.+ 
T Consensus        72 ~-~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~-  142 (356)
T cd06451          72 E-PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG--EAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNP-  142 (356)
T ss_pred             C-CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC--CCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccC-
Confidence            4 99999999987765  56778889999999998753  589999999999752     6899999999999999998 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +++|.++|+++|+++|+|++|.-   +..  ..++..    ++   .|   +++.|.+|.+++...+||
T Consensus       143 --~~~i~~~a~~~~~~li~D~~~~~---g~~--~~~~~~----~~---~d---~~~~s~~K~l~~p~g~G~  196 (356)
T cd06451         143 --LEGIGALAKKHDALLIVDAVSSL---GGE--PFRMDE----WG---VD---VAYTGSQKALGAPPGLGP  196 (356)
T ss_pred             --HHHHHHHHHhcCCEEEEeeehhc---cCc--cccccc----cC---cc---EEEecCchhccCCCCcce
Confidence              78889999999999999998753   211  111111    11   23   556788999987667776

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.79  E-value=2.8e-18  Score=161.60  Aligned_cols=163  Identities=23%  Similarity=0.223  Sum_probs=127.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      +.++++.+|+++    |  . .+-+++|+|+++++..++.+++. +||+|+++.++|..+...+...|++++.++.+.+.
T Consensus        61 i~~~~~~~A~~~----g--a-~~~~~~~~Gst~a~~~~l~al~~-~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~  132 (294)
T cd00615          61 IKEAQELAARAF----G--A-KHTFFLVNGTSSSNKAVILAVCG-PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP  132 (294)
T ss_pred             HHHHHHHHHHHh----C--C-CCEEEEcCcHHHHHHHHHHHcCC-CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence            778888888887    3  1 23455699999999999999985 99999999999999999999999999998876554


Q ss_pred             Cc----CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCC
Q 018147          249 GW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKF  323 (360)
Q Consensus       249 ~~----~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~  323 (360)
                      .|    .+|++++++++++    .++++++++++| |+||.+++   +++|+++|+++|+++|+||+|.. +.|.+.. .
T Consensus       133 ~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~-~  203 (294)
T cd00615         133 YYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPIL-P  203 (294)
T ss_pred             ccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCccc-C
Confidence            43    6899999999865    136899999999 79999998   89999999999999999999975 3343321 1


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      .+..    ..     + ..+++.|++|++ +|+|.|
T Consensus       204 ~~~~----~~-----~-~div~~S~hK~l-~g~~~~  228 (294)
T cd00615         204 SSAA----MA-----G-ADIVVQSTHKTL-PALTQG  228 (294)
T ss_pred             cchh----hc-----C-CcEEEEchhccc-chHhHH
Confidence            1111    11     1 358999999987 445543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.79  E-value=3.1e-18  Score=166.60  Aligned_cols=193  Identities=16%  Similarity=0.183  Sum_probs=133.7

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--C----
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S----  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--~----  213 (360)
                      .++.+.+++.+.+.+... ....|.     .+.++.+++.+.+.+|    .+++++++|+++++..+++.+..  .    
T Consensus        44 ~~p~v~~a~~~~~~~~~~-~~~~~~-----~~~~~~l~~~la~~~g----~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~  113 (379)
T TIGR00707        44 AHPKLVEALKEQLEKLVH-VSNLYY-----TEPQEELAEKLVEHSG----ADRVFFCNSGAEANEAALKLARKYTGDKGK  113 (379)
T ss_pred             CCHHHHHHHHHHHhhccc-cccccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHHHHHHHHHHHhhccCC
Confidence            358889998888876432 122342     2345555666655555    24999999999999998886521  1    


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEE----eecCCCCCcCC--CHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC-
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVP----YYLDEATGWGL--ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-  286 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~--d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-  286 (360)
                      +||+|++++|+|..+...+...+.....    .++..+..+..  |++.+++.+++      ++++|+++.++||+|.. 
T Consensus       114 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~  187 (379)
T TIGR00707       114 EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD------ETAAVIVEPIQGEGGVNP  187 (379)
T ss_pred             CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh------CeeEEEEEccccCCCCcc
Confidence            3799999999999887776666554321    23332211222  89999998876      68888886556677764 


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++.+++++|.++|+++|+++|+||+|.++.+.+.  +.++. . .+   ..+|  ++   +|||++++|+|+||
T Consensus       188 ~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~--~~~~~-~-~~---~~~d--~~---t~sK~~~~G~riG~  249 (379)
T TIGR00707       188 ASAEFLKALREICKDKDALLIFDEVQTGIGRTGK--FFAYE-H-YG---IEPD--II---TLAKGLGGGVPIGA  249 (379)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhhHH-h-cC---CCCC--EE---EEcccccCCcccEE
Confidence            6899999999999999999999999998766442  22211 1 11   1244  23   68999999999998

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.79  E-value=1.7e-18  Score=169.83  Aligned_cols=196  Identities=12%  Similarity=-0.017  Sum_probs=142.2

Q ss_pred             CCCCCHHHHHHHHHHHHcCC---CCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          137 QGLFSADSIERAWQILDQIP---GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~---~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      +..+++.+.+++.+.+....   ..+...|....+.+.+++.+++++.+.+|..  ..+|++++ +++|+..++.++++ 
T Consensus        28 ~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a~~~~l~~l~~-  103 (402)
T cd00378          28 ENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQANLAVYFALLE-  103 (402)
T ss_pred             CCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHHHHHHHHHhcC-
Confidence            33458888888876543211   1123446667777888888888877777743  44566554 57999999999984 


Q ss_pred             CCCEEEEcCCCchHHHHH-----HHHcCCeEEEeecCCCC-CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          214 ENDGILCPIPQYPLYSAS-----IALHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~-----~~~~g~~~~~v~~~~~~-~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      +||+|+++.|+|+.+...     ++..|.++..++++.+. ++.+|++++++++...     +++++++++|+||+  ..
T Consensus       104 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~  176 (402)
T cd00378         104 PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF-----KPKLIVAGASAYPR--PI  176 (402)
T ss_pred             CCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC-----CCCEEEecCcccCC--Cc
Confidence            999999999999876443     66678887777776542 5799999999998642     68899999998874  33


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCC-CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   +++|+++|+++|+++|+|++| .++.+.+. ....+.         ..|   +++.|+||.| +|.|.||
T Consensus       177 ~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~~~~~~---------~~d---v~~~s~sK~l-~G~~gg~  233 (402)
T cd00378         177 D---FKRFREIADEVGAYLLVDMAHVAGLVAGGV-FPNPLP---------GAD---VVTTTTHKTL-RGPRGGL  233 (402)
T ss_pred             C---HHHHHHHHHhcCCEEEEEccchhhhhhccc-CCCccc---------CCc---EEEeccccCC-CCCCceE
Confidence            4   889999999999999999995 66555442 111111         123   6799999998 6688886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.79  E-value=1.1e-17  Score=162.19  Aligned_cols=174  Identities=17%  Similarity=0.185  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC---
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND---  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd---  216 (360)
                      .|+++++++.+.+++        |.   +..++++++++++.+.+|    .+++++|+|+++|+.+++.+++. +||   
T Consensus        25 ~~~~v~~a~~~~~~~--------~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al~~al~al~~-~Gd~~~   88 (363)
T TIGR01437        25 VSDEVADAQKRGAQN--------YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGIAQSVAAVIT-RGNRYL   88 (363)
T ss_pred             CCHHHHHHHHHHHhc--------CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHHHHHHHHHhc-CCCcch
Confidence            588999998887653        22   357888888888888777    35799999999999999999984 888   


Q ss_pred             ------------EEEEcCCCchHH----HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEE-EecC
Q 018147          217 ------------GILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINP  279 (360)
Q Consensus       217 ------------~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~ii-l~~P  279 (360)
                                  +|+++.|.|..|    ...+...|++++.++.+    +.+|++++++++++      ++++++ +++|
T Consensus        89 ~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~  158 (363)
T TIGR01437        89 VENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSH  158 (363)
T ss_pred             hhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecC
Confidence                        999999888866    56778889999998763    47999999999987      788766 5688


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      +||+|.+.+   +++|+++|+++|+++|+|++|...       ..   ... .++   .|   +++.|++|.++| .|.|
T Consensus       159 ~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~~-------~~---~~~-~~g---~D---~~~~S~~K~l~g-p~~G  217 (363)
T TIGR01437       159 HCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEED-------LQ---KYY-RLG---AD---LVIYSGAKAIEG-PTSG  217 (363)
T ss_pred             CCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCCc-------hH---HHH-HcC---CC---EEEEeCCcccCC-CceE
Confidence            999999999   788899999999999999999721       11   111 111   13   677999998754 4577


Q ss_pred             C
Q 018147          360 W  360 (360)
Q Consensus       360 w  360 (360)
                      |
T Consensus       218 ~  218 (363)
T TIGR01437       218 L  218 (363)
T ss_pred             E
Confidence            5

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.79  E-value=1.3e-17  Score=162.10  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             CCccccCcc-C--CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          128 PSILDRSET-Q--GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       128 p~~l~~~~~-~--~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      .++||++.+ .  ...++.+++++.+.+..... ....|....|...+++.+++.+.+.+|   .++.|++++| ++++.
T Consensus        39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~g-~~~~~  113 (385)
T PRK05958         39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGA-GSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSSG-YAANL  113 (385)
T ss_pred             ceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-HHHHH
Confidence            344555444 1  13468899999888876321 122344444555556666666655555   2455555555 55666


Q ss_pred             HHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       205 ~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      .++..++ ++||.|+++.|+|+.+...++..|.+++.++.       .|++.+++.+++.   ..++.++++.+++||||
T Consensus       114 ~~l~~~~-~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~---~~~~~lvi~~~~~~~~G  182 (385)
T PRK05958        114 AVLTALA-GKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKW---RAGRALIVTESVFSMDG  182 (385)
T ss_pred             HHHHHhC-CCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhc---cCCCeEEEEEecccCCC
Confidence            6777787 59999999999999999999999999888764       3788999888652   01244555557899999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ...+   +++|+++|+++|+++|+||+|....++...  ..+... ..+. ..+  ++|++.|+||+|++
T Consensus       183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g--~~~~~~-~~~~-~~~--~~i~~~s~sK~~~~  243 (385)
T PRK05958        183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG--RGLAAE-AGLA-GEP--DVILVGTLGKALGS  243 (385)
T ss_pred             CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC--CchHHh-hCCC-CCC--ceEEEEechhhccc
Confidence            8877   899999999999999999999876554321  111111 1111 112  47999999999864

>PRK02948 cysteine desulfurase; Provisional

Probab=99.79  E-value=4.6e-18  Score=165.69  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=131.9

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCCCC----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-
Q 018147          138 GLFSADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-  212 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-  212 (360)
                      ..+|+.+++++.+.+..........|..    ..-..++|+.+|+++    |  +++++|++|+|+++++..++..++. 
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (381)
T PRK02948         10 TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMI----G--GEEQGIYFTSGGTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHHh
Confidence            3568889999888776532101111111    111445566666665    3  5688999999999999998888752 


Q ss_pred             --CCCCEEEEcCCCchHH---HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          213 --SENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       213 --~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                        .+||.|++....|+.+   ...++..|++++.++++++  +.+|+++|++++++      ++++|++++|+||||.++
T Consensus        84 ~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~  155 (381)
T PRK02948         84 LPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKS--GLIRLVDLERAITP------DTVLASIQHANSEIGTIQ  155 (381)
T ss_pred             ccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCC--CCCCHHHHHHhcCC------CCEEEEEECCcCCcEeeh
Confidence              3789999999666654   4456677999999998754  57899999998865      688999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +   +++|.++|+++|+++|+|+++ .+...+    ..+.    ..    +  ..+++.|++|.+++
T Consensus       156 ~---~~~I~~l~~~~~~~vivD~~~-~~g~~~----~~~~----~~----~--~d~~~~s~~K~~gp  204 (381)
T PRK02948        156 P---IAEIGALLKKYNVLFHSDCVQ-TFGKLP----IDVF----EM----G--IDSLSVSAHKIYGP  204 (381)
T ss_pred             h---HHHHHHHHHHcCCEEEEEChh-hccccc----cCcc----cC----C--CCEEEecHHhcCCC
Confidence            8   788999999999999999654 422111    1111    11    1  23678899998764

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.79  E-value=2.6e-18  Score=169.40  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=125.5

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHH----HHHHHHcC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHG  236 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~----~~~~~~~g  236 (360)
                      ..|+.+. ..+|++.+|+++    |    .+..++++++++|+..++..++. +||+|+++.+.|+..    ...++..|
T Consensus        52 sr~~~p~-~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~~l~~-~Gd~Vl~~~~~y~~t~~~~~~~~~~~G  121 (418)
T TIGR01326        52 SRLMNPT-TDVLEQRIAALE----G----GVAALAVASGQAAITYAILNLAQ-AGDNIVSSSYLYGGTYNLFKHTLKRLG  121 (418)
T ss_pred             ECCCChh-HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhC-CCCEEEEECCCcHHHHHHHHHHHHHcC
Confidence            4455444 678888888876    3    25688899999999999988884 999999999988653    44567789


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++++.++.+       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       122 ~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~  185 (418)
T TIGR01326       122 IEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPY  185 (418)
T ss_pred             cEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhh
Confidence            999988742       78999998876      7899999999999999988   8899999999999999999997532


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      +..     ++    . .     + ..|+++|+||.++| |.|+||
T Consensus       186 ~~~-----~l----~-~-----g-~Divv~S~sK~l~g~G~~lGg  214 (418)
T TIGR01326       186 LCR-----PI----D-H-----G-ADIVVHSATKYIGGHGTAIGG  214 (418)
T ss_pred             cCC-----ch----h-c-----C-CeEEEECccccccCCccceEE
Confidence            111     11    1 1     1 35899999999988 999997

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.79  E-value=2.8e-18  Score=167.87  Aligned_cols=203  Identities=14%  Similarity=0.137  Sum_probs=143.8

Q ss_pred             CCCccccCcc----CCCC-CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGLF-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..+++|+..+    ..+. ++.+.+++.+.+..... ....|     ..++++++++++.+..|    .+++++|+|+++
T Consensus        38 g~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~~----~~~v~~~~gg~e  107 (396)
T PRK02627         38 GKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIH-TSNLY-----YIEPQEELAEKLVELSG----MDKVFFCNSGAE  107 (396)
T ss_pred             CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccc-ccccc-----CCHHHHHHHHHHHhhcC----CCEEEECCCcHH
Confidence            3445565544    2344 57888888888775421 11122     35788888988887654    479999999999


Q ss_pred             HHHHHHHHHccCCC-------CEEEEcCCCchHHHHHHHHcCCeEE----EeecCCCCCc----CCCHHHHHHHHHHHHh
Q 018147          202 AVHMMMQLLIRSEN-------DGILCPIPQYPLYSASIALHGGTLV----PYYLDEATGW----GLETSEVKKQLEAAKA  266 (360)
Q Consensus       202 al~~~~~~l~~~~g-------d~Vlv~~P~y~~~~~~~~~~g~~~~----~v~~~~~~~~----~~d~~~L~~~i~~~~~  266 (360)
                      |+..+++.+.. .+       ++|++..+.|..+.......+....    ..++..  ++    ..|++++++++.+   
T Consensus       108 A~~~al~~a~~-~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~i~~---  181 (396)
T PRK02627        108 ANEAAIKLARK-YGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVE--GFIYVPFNDIEALKAAITD---  181 (396)
T ss_pred             HHHHHHHHHHH-HhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCC--CceEeCCCCHHHHHHhcCC---
Confidence            99999997653 22       7799999999877655544433221    111111  11    2288999998854   


Q ss_pred             cCCCccEEEEecCCCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          267 KGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       267 ~g~~~k~iil~~P~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                         ++++|+++.++||+| .+++.+.+++|.++|+++|+++|+||+|.++.+.+.  +.++...  +   ..+|     +
T Consensus       182 ---~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~--~~~~~~~--~---~~pd-----i  246 (396)
T PRK02627        182 ---KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK--LFAYQHY--G---IEPD-----I  246 (396)
T ss_pred             ---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc--eeeehhc--C---CCCC-----E
Confidence               789999998899999 688999999999999999999999999999766543  2222111  1   1244     2


Q ss_pred             eccCcCccccccccC
Q 018147          346 QSVSKGRYFHFFSKW  360 (360)
Q Consensus       346 ~S~SK~~~g~~RvGw  360 (360)
                      .+|||++++|+|+||
T Consensus       247 ~t~sK~~~~G~rig~  261 (396)
T PRK02627        247 MTLAKGLGGGVPIGA  261 (396)
T ss_pred             EEEcchhhCCcccEE
Confidence            479999999999998

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.79  E-value=7.9e-18  Score=163.48  Aligned_cols=161  Identities=16%  Similarity=0.251  Sum_probs=128.0

Q ss_pred             CCCCCHHHHHHHHHHHHcCCC-CCCCCCCC----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          137 QGLFSADSIERAWQILDQIPG-RATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      +...|+.+++++.+.+..... .....|..    ..+..++|+.+++++    |.. ..++|++|+|+++++..++.+++
T Consensus         9 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~al~~~~~~~~   83 (376)
T TIGR01977         9 TYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAP-SSAHVVFTNNATTALNIALKGLL   83 (376)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCHHHHHHHHHHhcc
Confidence            446688899988888776421 11223443    245678888888877    321 34589999999999999999988


Q ss_pred             cCCCCEEEEcCCCchHHHH----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      . +||+|+++.+.|+.+..    .++.+|.+++.++.+.+  +.+|++++++++++      +++++++++|+||||.++
T Consensus        84 ~-~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~  154 (376)
T TIGR01977        84 K-EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNE--GLISPERIKRAIKT------NTKLIVVSHASNVTGTIL  154 (376)
T ss_pred             C-CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHhcCC------CCeEEEEECCCCCccccC
Confidence            4 99999999999987643    44556999999988653  57899999999865      789999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +   +++|.++|+++|+++|+|+++..
T Consensus       155 ~---~~~i~~l~~~~~~~livD~a~~~  178 (376)
T TIGR01977       155 P---IEEIGELAQENGIFFILDAAQTA  178 (376)
T ss_pred             C---HHHHHHHHHHcCCEEEEEhhhcc
Confidence            9   77889999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.79  E-value=3.8e-18  Score=166.42  Aligned_cols=159  Identities=14%  Similarity=0.183  Sum_probs=122.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH----Hc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~----~~  235 (360)
                      ...|+.+. ...|++++|++.    |    .+++++++|+++++..++..++. +||+|+++.|.|+.....+.    ..
T Consensus        46 Y~R~~~pt-~~~L~~~lA~l~----g----~~~~i~~~sg~~Ai~~~l~~l~~-~GD~Vl~~~~~y~~~~~~~~~~~~~~  115 (386)
T PRK08045         46 YSRRGNPT-RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLK-PGDLLVAPHDCYGGSYRLFDSLAKRG  115 (386)
T ss_pred             eeCCCCcc-HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHcC-CCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence            55666664 788888888886    3    24699999999999999999984 99999999999996433322    23


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.++..++       ..|++++++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|...
T Consensus       116 gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~  179 (386)
T PRK08045        116 CYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSP  179 (386)
T ss_pred             CeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence            34555542       3578999998876      7999999999999999998   788889999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      ....     ++     ..+   .|   ++++|++|.++|  +++.||
T Consensus       180 ~~~~-----pl-----~~g---aD---ivv~S~tK~l~G~~d~~~G~  210 (386)
T PRK08045        180 ALQN-----PL-----ALG---AD---LVLHSCTKYLNGHSDVVAGV  210 (386)
T ss_pred             ccCC-----ch-----hhC---CC---EEEeecceeccCCCCceeEE
Confidence            3321     11     111   23   889999998874  667765

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.78  E-value=6.6e-18  Score=164.32  Aligned_cols=153  Identities=17%  Similarity=0.257  Sum_probs=124.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~V  218 (360)
                      +..+.++++.+.+.+..   .  +    |...+++++++++.+..|    .+++++|+|+++|+.+++.++ + +|||+|
T Consensus         9 ~~~~e~~a~~~~~~~~~---~--~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~-~pGd~V   74 (376)
T TIGR02379         9 VTGQELEYIAEAISEGK---L--S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDI-QPGDEV   74 (376)
T ss_pred             CCHHHHHHHHHHHHcCC---c--c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCC-CCcCEE
Confidence            35666777777776521   1  1    223466677777766544    478999999999999999887 5 599999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.++|+.+...+...|++++.++++++ +|.+|++++++++++      ++|+|+   |+||+|...+   +++|.++
T Consensus        75 iv~~~t~~~~~~~~~~~G~~~v~vd~d~~-~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~l  141 (376)
T TIGR02379        75 IMPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMAL  141 (376)
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHH
Confidence            99999999999999999999999999865 488999999999876      788886   5678999887   8899999


Q ss_pred             HHHcCCEEEEccCCCCCc-cCC
Q 018147          299 CKKEGLVLLADEVYQENV-YVP  319 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~-~~~  319 (360)
                      |+++|++||+|++|+... |++
T Consensus       142 a~~~~i~vIeDaa~~~g~~~~~  163 (376)
T TIGR02379       142 ANKHQLFVIEDAAQGVMSTYKG  163 (376)
T ss_pred             HHHCCCEEEEECccccCCccCC
Confidence            999999999999998764 444

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.78  E-value=6.1e-18  Score=165.76  Aligned_cols=159  Identities=17%  Similarity=0.203  Sum_probs=123.3

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~  235 (360)
                      ...|+.+. ...|++.+|+++    |  .  +..+++++++.++..++..++ ++||+|+++.|.|..+...    +...
T Consensus        59 y~r~~~p~-~~~Le~~lA~l~----G--~--~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~  128 (398)
T PRK07504         59 YSRYSNPT-VDMFEKRMCALE----G--A--EDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRY  128 (398)
T ss_pred             eecCCCch-HHHHHHHHHHHh----C--C--CeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhc
Confidence            34565554 788999999886    3  2  233456778889988887777 4999999999999976544    3456


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++       .+|++++++++++      ++|+|++++|+||||.+++   +++|.++|+++|+++|+|++|...
T Consensus       129 G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~  192 (398)
T PRK07504        129 GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATP  192 (398)
T ss_pred             CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcccc
Confidence            88888874       3689999999876      7999999999999999998   888999999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      .+...     +     .++   .   .++++|+||.|+| |.|+||
T Consensus       193 ~~~~~-----~-----~~g---a---Divv~S~sK~l~g~g~~~GG  222 (398)
T PRK07504        193 LFQKP-----L-----ELG---A---HIVVYSATKHIDGQGRCLGG  222 (398)
T ss_pred             ccCCc-----h-----hhC---C---CEEEeeccccccCCccceEE
Confidence            44211     1     111   1   3789999999976 888863

>PRK07179 hypothetical protein; Provisional

Probab=99.78  E-value=1.9e-17  Score=162.82  Aligned_cols=198  Identities=15%  Similarity=0.079  Sum_probs=141.3

Q ss_pred             ccccCcc---CCCCCHHHHHHHHHHHHcCCCCC--CCCCC-CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          130 ILDRSET---QGLFSADSIERAWQILDQIPGRA--TGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~--~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      +++++.+   ...-.|++++++.+.+.+.+...  ...|. ......+|++.+|+++    |    .+.+++++|+++|+
T Consensus        56 ~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~sG~~An  127 (407)
T PRK07179         56 AIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----G----FESCLLCQSGWAAN  127 (407)
T ss_pred             EEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----C----CCcEEEECCHHHHH
Confidence            4444444   22347889999988887643210  11121 1123567777777776    3    35678899999999


Q ss_pred             HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       204 ~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      ..++++++. +||.|++..+.|......++..|++++.++       ..|+++|++++++.     ++++|++.+|+|||
T Consensus       128 ~~~l~~l~~-~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~-----~~~lV~v~~v~n~t  194 (407)
T PRK07179        128 VGLLQTIAD-PNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIERH-----GPGIIVVDSVYSTT  194 (407)
T ss_pred             HHHHHHhCC-CCCEEEEECCcCHHHHHHHHHCCCeEEEec-------CCCHHHHHHHHHhc-----CCeEEEECCCCCCC
Confidence            999999985 999999999999988888888898877654       24899999998752     46788888999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+.+   +++|.++|+++|+++|+||+|....++..  ...+.... ++.   ++ -.+++.|+||++++  |+||
T Consensus       195 G~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~--g~g~~~~~-~~~---~~-vdi~~~S~sK~~g~--~~G~  259 (407)
T PRK07179        195 GTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQ--GAGLVAEL-GLT---SR-VHFITASLAKAFAG--RAGI  259 (407)
T ss_pred             Ccccc---HHHHHHHHHHcCCEEEEECcccccCcCCC--CCchHHhc-CCC---CC-CCEEEeechHhhhc--cCeE
Confidence            99999   78899999999999999999986444322  11222111 110   11 13788999999975  6886

>PRK06460 hypothetical protein; Provisional

Probab=99.78  E-value=4e-18  Score=165.88  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=113.8

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCC----CchHHHHHHHHcCCeEEEe
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP----QYPLYSASIALHGGTLVPY  242 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P----~y~~~~~~~~~~g~~~~~v  242 (360)
                      ....+|++.+|+++    |  . ...+++ +++++++..++..+++ +||+|+++.|    +|..|...++..|+++..+
T Consensus        45 p~~~~L~~~lA~l~----g--~-~~~v~~-~sG~~ai~~~l~al~~-~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~  115 (376)
T PRK06460         45 PTVLELTKKIVELE----N--A-EMGVAF-SSGMGAISTTALALLK-PGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS  115 (376)
T ss_pred             ccHHHHHHHHHHHh----C--C-CcEEEe-CCHHHHHHHHHHHHhC-CCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence            35889999999987    2  2 234555 4457999999999985 9999999975    4556667788899998887


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +.++       .+.+++.+++      ++|+|++++|+||||.+++   +++|+++|+++|+++|+|++|..... .   
T Consensus       116 ~~~~-------~~~l~~~~~~------~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~-~---  175 (376)
T PRK06460        116 NPGS-------DNIIEKAKSK------RYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPIN-Q---  175 (376)
T ss_pred             CCCC-------HHHHHHhcCC------CceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcccc-C---
Confidence            7542       2334433333      7899999999999999999   66788999999999999999986321 1   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                       .   .. . .     + ..|+++|+||.|+|  +.|.||
T Consensus       176 -~---~l-~-~-----~-~divv~S~sK~l~G~~~~~~G~  203 (376)
T PRK06460        176 -K---PL-E-L-----G-ADIVVHSASKFLAGHNDVIAGL  203 (376)
T ss_pred             -C---hh-h-c-----C-CCEEEeecceeccCCCCceEEE
Confidence             1   11 0 0     1 24899999999875  478887

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.78  E-value=5.3e-18  Score=166.45  Aligned_cols=158  Identities=15%  Similarity=0.198  Sum_probs=122.5

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHG  236 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g  236 (360)
                      ..|+.+. ...|++.+|+++    |    .+..+++++++.|+..++..++ .+||+|+++.|.|..    +...++..|
T Consensus        60 ~r~~~p~-~~~le~~lA~l~----g----~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G  129 (403)
T PRK07503         60 SRISNPT-LALLEQRMASLE----G----GEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFG  129 (403)
T ss_pred             eCCCCch-HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCC
Confidence            3444443 788888888886    2    2345666677899999998888 499999999998864    334456789


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++++.++.+       |++++++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       130 ~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~  193 (403)
T PRK07503        130 VTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPY  193 (403)
T ss_pred             EEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence            998888653       68899998876      7999999999999999988   8899999999999999999998643


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      ...     ++     ..+   .|   |+++|+||.++|  ++|.||
T Consensus       194 ~~~-----~l-----~~g---~D---i~v~S~tK~l~g~gd~~gG~  223 (403)
T PRK07503        194 LQR-----PL-----ELG---AD---LVVHSATKYLGGHGDITAGL  223 (403)
T ss_pred             cCC-----ch-----hhC---CC---EEEccccccccCCCceeEEE
Confidence            321     11     111   23   889999999986  577775

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.78  E-value=6.6e-18  Score=164.55  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=124.7

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~  235 (360)
                      ..+|+.+. ...|++++|++.    |    .+++++|+|+++|+..++.+++ ++||+|+++.|.|......    ....
T Consensus        47 Y~R~~npt-~~~Le~~lA~le----g----~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~  116 (388)
T PRK08861         47 YTRSGNPN-RGLLEQTLSELE----S----GKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKG  116 (388)
T ss_pred             ccCCCCch-HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence            44566655 788888888887    2    5899999999999999999998 4999999999999864332    2334


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.+++.++       ..|++++++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|...
T Consensus       117 gi~v~~vd-------~~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~  180 (388)
T PRK08861        117 DFKVQFVD-------QSDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTP  180 (388)
T ss_pred             CeEEEEEC-------CCCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence            67777764       2478999988876      7999999999999999999   778899999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      .+...  .        .++   -|   ++++|++|.++|  +++-||
T Consensus       181 ~~~~p--l--------~~G---aD---ivv~S~tK~l~G~~d~~gG~  211 (388)
T PRK08861        181 VLQKP--L--------ELG---AD---FVIHSTTKYINGHSDVIGGV  211 (388)
T ss_pred             ccCCC--c--------ccC---CC---EEEeecceeccCCCcceeEE
Confidence            44321  1        111   23   889999998875  455554

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.77  E-value=6.5e-18  Score=165.43  Aligned_cols=155  Identities=12%  Similarity=0.153  Sum_probs=120.1

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCC
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGG  237 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~  237 (360)
                      .|+.+. ...|++.+|+++    |    .++.++++++++|+..++.+++. +||+|+++.|.|.....    .+...|+
T Consensus        60 r~~~p~-~~~le~~lA~l~----g----~~~~i~~ssG~~Ai~~~l~all~-~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         60 RNTNPT-VQAFEEKVRILE----G----AEAATAFSTGMAAISNTLYTFLK-PGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             CCCChH-HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcC-CCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            344443 678888888887    2    34567777778999999998884 99999999999987543    4556788


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      +++.++       ..|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....
T Consensus       130 ~v~~vd-------~~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~  193 (398)
T PRK08249        130 DVTLCE-------TGDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN  193 (398)
T ss_pred             EEEEcC-------CCCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc
Confidence            887664       2489999999876      7999999999999999999   88899999999999999999997543


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                      ..     ++     ..+   .|   ++++|+||.++| +.++
T Consensus       194 ~~-----~l-----~~~---~D---ivv~S~sK~l~g~~~~~  219 (398)
T PRK08249        194 QN-----PL-----ALG---AD---LVIHSATKFLSGHADAL  219 (398)
T ss_pred             CC-----ch-----hhC---CC---EEeccCceecCCCCCce
Confidence            21     11     111   23   778999999976 5454

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.77  E-value=2.3e-17  Score=158.66  Aligned_cols=176  Identities=17%  Similarity=0.144  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      .|.+++++.+.++...           |..++.+++.+.+.+.+|  ++++++++++|+.+++..++.+++ ++||.|++
T Consensus        35 ~~~~~~~~~~~~~~~~-----------g~~~~~~~Le~~lA~~~g--~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli  100 (346)
T TIGR03576        35 GFKIDEEDLELLETYV-----------GPAIFEEKVQELGREHLG--GPEEKILVFNRTSSAILATILALE-PPGRKVVH  100 (346)
T ss_pred             ChhHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHcC--CCcceEEEECCHHHHHHHHHHHhC-CCCCEEEE
Confidence            5668888888777631           344555555555555555  468999999999999999999999 49999997


Q ss_pred             c---CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          221 P---IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       221 ~---~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      +   .|+|+.|...++..|++++.+         .++++++. . +      ++++|++ +++|++|.+++.+++++|++
T Consensus       101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~-~-~------~~~lIii-tg~s~~G~v~~~~~L~~i~~  162 (346)
T TIGR03576       101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK-I-D------GTSLVVI-TGSTMDLKVVSEEDLKRVIK  162 (346)
T ss_pred             CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh-C-c------CceEEEE-ECCCCCCcccCHHHHHHHHH
Confidence            5   479999999999999986432         13444322 1 1      5677776 55799999999999999999


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|+++|+++|+||+|..++..... ..+..    ..+   .|   |++.||||++ +|+|+||
T Consensus       163 la~~~~~~livDEAy~~~~~~~~~-~~~~~----~~~---~d---ivv~s~SKal-aG~r~G~  213 (346)
T TIGR03576       163 QAKSKEAIVLVDDASGARVRRLYG-QPPAL----DLG---AD---LVVTSTDKLM-DGPRGGL  213 (346)
T ss_pred             HHHHcCCEEEEECCccccccccCC-CCCHH----HcC---Cc---EEEeccchhc-cccceEE
Confidence            999999999999999987643211 11211    111   23   6677999954 5689997

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.77  E-value=1.1e-17  Score=163.90  Aligned_cols=208  Identities=11%  Similarity=0.041  Sum_probs=139.1

Q ss_pred             CCCccccCcc----CCCC-CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGLF-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +.+++|+..+    ..+. ++.+.+++.+.+.+... ....|....+     .++++++.+.+|. ..++++++++|+++
T Consensus        42 g~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~-~~~~~~~~~~-----~~la~~l~~~~~~-~~~~~v~~~~sgse  114 (398)
T PRK03244         42 GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH-VSNLFATEPQ-----IALAERLVELLGA-PEGGRVFFCNSGAE  114 (398)
T ss_pred             CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccC-ccCccCCHHH-----HHHHHHHHHhCCC-CCCCEEEEeCchHH
Confidence            4456666553    3344 78899999988887532 1234654432     3555555555552 24579999999999


Q ss_pred             HHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHc-CCeEEEeec---CCCCC-c-CCCHHHHHHHHHHHHhcCCCccEE
Q 018147          202 AVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALH-GGTLVPYYL---DEATG-W-GLETSEVKKQLEAAKAKGITVRAL  274 (360)
Q Consensus       202 al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~---~~~~~-~-~~d~~~L~~~i~~~~~~g~~~k~i  274 (360)
                      |+..+++.+.. +| +.|+..+++|..+....... |......+.   ..+-. + ..|++.+++.+.+      ++++|
T Consensus       115 a~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~av  187 (398)
T PRK03244        115 ANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD------DTAAV  187 (398)
T ss_pred             HHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC------CeEEE
Confidence            99999997764 55 56777788998775443332 221111000   00000 0 1378899888754      78899


Q ss_pred             EEecCCCCcccCCCHHH-HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          275 VVINPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       275 il~~P~NPTG~~~~~~~-l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +++.++||||.+++.++ +++|.++|++||+++|+||+|.++.+.+.  ...+ .. .+   ..||     +-+|||+++
T Consensus       188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~-~~-~~---~~pD-----i~t~sK~l~  255 (398)
T PRK03244        188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA--WFAH-QH-DG---VTPD-----VVTLAKGLG  255 (398)
T ss_pred             EEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch--HHhh-hh-hC---CCCC-----EEEEchhhh
Confidence            99888999999997765 99999999999999999999998655442  1111 11 11   1256     238899999


Q ss_pred             ccccccC
Q 018147          354 FHFFSKW  360 (360)
Q Consensus       354 g~~RvGw  360 (360)
                      +|+|+||
T Consensus       256 ~G~~ig~  262 (398)
T PRK03244        256 GGLPIGA  262 (398)
T ss_pred             CCcccEE
Confidence            9999997

>PLN02822 serine palmitoyltransferase

Probab=99.77  E-value=4.6e-17  Score=163.10  Aligned_cols=207  Identities=15%  Similarity=0.112  Sum_probs=149.9

Q ss_pred             CCCCccccCcc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 018147          126 DHPSILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA  199 (360)
Q Consensus       126 ~~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga  199 (360)
                      +..+++|++.+   ....++++++++.+.+++.+..   ....|++..+..+|++++|+++.       .++.|++++|.
T Consensus       107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~  179 (481)
T PLN02822        107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGL  179 (481)
T ss_pred             CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHH
Confidence            34556676655   3345889999999999874320   12357777889999999999982       35789999888


Q ss_pred             HHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc---CCCc-cEEE
Q 018147          200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK---GITV-RALV  275 (360)
Q Consensus       200 ~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~---g~~~-k~ii  275 (360)
                      + ++..++.++++ +||.|++....|..+...+...|.+++.++..       |.+.++..+++..+.   .+++ ++|+
T Consensus       180 ~-a~~sai~a~~~-~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Iv  250 (481)
T PLN02822        180 S-TIFSVIPAFCK-KGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIV  250 (481)
T ss_pred             H-HHHHHHHHhCC-CCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEE
Confidence            7 56788889984 99999999888888888888899999988755       345555555443221   1245 5777


Q ss_pred             EecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc--
Q 018147          276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY--  353 (360)
Q Consensus       276 l~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~--  353 (360)
                      +..++|+||.+.+   +++|+++|++||+++|+||+|...+++..  ...+.... ++..  .+ ..|++.||||+|+  
T Consensus       251 ve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~--G~G~~e~~-~v~~--~~-~dii~~s~sKalg~~  321 (481)
T PLN02822        251 VEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKS--GRGLSEHF-GVPI--EK-IDIITAAMGHALATE  321 (481)
T ss_pred             EecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCChHHHc-CCCC--CC-CeEEEecchhhhhhC
Confidence            7788999999999   89999999999999999999998777643  11222211 1110  12 3488999999998  


Q ss_pred             cccc
Q 018147          354 FHFF  357 (360)
Q Consensus       354 g~~R  357 (360)
                      ||.=
T Consensus       322 GG~i  325 (481)
T PLN02822        322 GGFC  325 (481)
T ss_pred             CeEE
Confidence            6543

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.76  E-value=1.1e-17  Score=162.38  Aligned_cols=158  Identities=18%  Similarity=0.224  Sum_probs=120.7

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~  235 (360)
                      ...|+.+. ..+|++.+|++.    |  .  +..++++|+++|+..++. ++ .+||+|+++.|.|+.    +...++..
T Consensus        46 y~r~~~pt-~~~le~~la~l~----g--~--~~~~~~~sG~~ai~~~~~-ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~  114 (366)
T PRK08247         46 YSRTGNPT-RGVLEQAIADLE----G--G--DQGFACSSGMAAIQLVMS-LF-RSGDELIVSSDLYGGTYRLFEEHWKKW  114 (366)
T ss_pred             ccCCCCch-HHHHHHHHHHHh----C--C--CcEEEEcCHHHHHHHHHH-Hh-CCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence            44566655 788888888886    3  2  334778888999998764 66 499999999999986    34455668


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.       .|++++++++++      ++++|++++|+||+|.   ..++++|+++|+++|+++|+|++|...
T Consensus       115 G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~  178 (366)
T PRK08247        115 NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTP  178 (366)
T ss_pred             CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccc
Confidence            999988764       378999998876      7999999999999764   566999999999999999999999643


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      .+..     ++    . .     . ..|+++|+||.++|  +++.||
T Consensus       179 ~~~~-----p~----~-~-----g-~di~i~S~sK~~~g~~d~~~G~  209 (366)
T PRK08247        179 VLQR-----PL----E-E-----G-ADIVIHSATKYLGGHNDVLAGL  209 (366)
T ss_pred             cccC-----ch----h-c-----C-CcEEEeecceeccCCCceeeeE
Confidence            2221     11    0 1     1 24899999999986  677775

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.76  E-value=1.4e-17  Score=162.81  Aligned_cols=158  Identities=15%  Similarity=0.188  Sum_probs=122.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~  235 (360)
                      ...|+.+. ...|++.+|++.    |    .+..+++++++.|+..++..++. +||+|+++.|.|..    +...+...
T Consensus        53 y~r~~~p~-~~~le~~lA~l~----g----~~~av~~~sG~~Ai~~~l~al~~-~Gd~Vi~~~~~y~~t~~~~~~~~~~~  122 (391)
T TIGR01328        53 YSRLGNPT-VSNLEGRIAFLE----G----TEAAVATSSGMGAIAATLLTILK-AGDHLISDECLYGCTFALLEHALTKF  122 (391)
T ss_pred             eeCCCCch-HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEecCcchHHHHHHHHHHhcC
Confidence            34455554 678999999887    2    24467788888999999998884 99999999998764    34455668


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |+++..++++       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       123 G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~  186 (391)
T TIGR01328       123 GIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATP  186 (391)
T ss_pred             CeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchh
Confidence            9888888653       68899998876      7999999999999999998   888999999999999999999864


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      .+...     +     ..+   .|   |+++|+||.+++ |.|+|
T Consensus       187 ~~~~~-----~-----~~g---~D---ivv~S~sK~lgg~g~~~g  215 (391)
T TIGR01328       187 MLTNP-----V-----ALG---VD---VVVHSATKYIGGHGDVVA  215 (391)
T ss_pred             ccCCc-----h-----hcC---CC---EEEccccccccCCCCceE
Confidence            43211     1     111   23   788999999986 66543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.76  E-value=2e-17  Score=161.56  Aligned_cols=153  Identities=16%  Similarity=0.170  Sum_probs=117.3

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH----HcCCeEEEe
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPY  242 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v  242 (360)
                      ....+|++++|++...        +..++++++++|+..++.+++ ++||+|+++.|+|......+.    ..|+++..+
T Consensus        61 p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~  131 (388)
T PRK07811         61 PTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV  131 (388)
T ss_pred             ccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence            4588999999998722        223444566899999999998 499999999999985433333    247777766


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +.       .|++++++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......   
T Consensus       132 d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~---  192 (388)
T PRK07811        132 DL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQQ---  192 (388)
T ss_pred             CC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence            53       378999998876      7999999999999998866   9999999999999999999998743321   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                        ++     .++   .|   +++.|++|.++|  +++.||
T Consensus       193 --p~-----~~g---aD---ivv~S~sK~l~g~~~~~gG~  219 (388)
T PRK07811        193 --PL-----ALG---AD---VVVHSTTKYIGGHSDVVGGA  219 (388)
T ss_pred             --ch-----hhC---Cc---EEEecCceeecCCCCcEEEE
Confidence              11     111   23   889999999986  466776

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.76  E-value=2.3e-17  Score=161.88  Aligned_cols=158  Identities=15%  Similarity=0.234  Sum_probs=117.2

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHG  236 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g  236 (360)
                      ..|+.+. ...|++.+|++.    |   .++.+ +++++++++..++.+++. +||+|+++.|.|..    +...++..|
T Consensus        55 ~R~~~p~-~~~Le~~lA~l~----g---~~~~v-~~~sG~~Ai~~~l~all~-pGD~Vvv~~p~Y~~t~~~~~~~~~~~g  124 (405)
T PRK08776         55 TRSGNPT-RDLLGEALAELE----G---GAGGV-ITATGMGAINLVLNALLQ-PGDTLVVPHDAYGGSWRLFNALAKKGH  124 (405)
T ss_pred             cCCCChH-HHHHHHHHHHHh----C---CCceE-EEcCHHHHHHHHHHHHhC-CCCEEEEccCCchHHHHHHHHHHHhcC
Confidence            3444433 456777777664    4   13445 455558999999999984 99999999999987    445556668


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      .+++.+++       .|+++|++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       125 ~~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~  188 (405)
T PRK08776        125 FALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA  188 (405)
T ss_pred             cEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence            88887754       378899988865      7999999999999999976   8999999999999999999997632


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      .     +.++ .    ++   .|   +++.|.+|.++|  ++..||
T Consensus       189 ~-----~~pl-~----~g---aD---ivv~S~tK~l~g~~~~~~G~  218 (405)
T PRK08776        189 L-----QKPL-E----FG---AD---LVLHSTTKYINGHSDVVGGA  218 (405)
T ss_pred             c-----CCcc-c----cc---CC---EEEecCceeecCCCCceEEE
Confidence            1     1121 1    11   23   889999999875  456664

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.76  E-value=1.5e-17  Score=162.77  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=121.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~  235 (360)
                      ...|+.+. ..+|++.++++.    |    .+++++++|+++|+..++.++++ +||+|+++.|+|..+..    .+...
T Consensus        59 Y~r~~~pt-~~~Le~~lA~l~----g----~~~~l~~~sgt~Ai~~~l~al~~-~GD~Vl~~~~~y~~~~~~~~~~~~~~  128 (394)
T PRK07050         59 YGLHATPT-SLALAQRLAEIE----G----GRHALLQPSGLAAISLVYFGLVK-AGDDVLIPDNAYGPNRDHGEWLARDF  128 (394)
T ss_pred             cCCCCCHH-HHHHHHHHHHHh----C----CCeEEEeccHHHHHHHHHHHHhC-CCCEEEEecCCcccHHHHHHHHHHhc
Confidence            34454443 667777777765    3    46899999999999999999984 99999999999997664    45667


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++..       +.+.+++++++      ++|+|++++|+||+|.   ..++++|+++|+++|+++|+|++|...
T Consensus       129 Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~  192 (394)
T PRK07050        129 GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAG  192 (394)
T ss_pred             CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcccc
Confidence            9998887632       34678887765      7999999999999975   456999999999999999999999774


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc--ccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH--FFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~--~RvGw  360 (360)
                      .+..        ..  ..+      .-|+++|+||.++|+  ++.||
T Consensus       193 ~~~~--------~l--~~G------aDi~v~S~tK~~~g~~~~~gG~  223 (394)
T PRK07050        193 LAFK--------PF--EHG------VDISVQALTKYQSGGSDVLMGA  223 (394)
T ss_pred             cccC--------HH--HcC------CeEEEEECCceecCCCCeeEEE
Confidence            3211        11  111      138899999999764  44664

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.76  E-value=3.5e-17  Score=159.56  Aligned_cols=157  Identities=17%  Similarity=0.250  Sum_probs=123.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~  235 (360)
                      ...|..+. ..+|++.+++++    |    .+++++++++++|+..++.+++. +||+|+++.+.|..    +...++..
T Consensus        48 y~r~~~p~-~~~le~~la~l~----g----~~~~~~~~sG~~Ai~~al~al~~-~Gd~Vl~~~~~~~~t~~~~~~~~~~~  117 (380)
T TIGR01325        48 YSRYANPT-VAAFEERIAALE----G----AERAVATATGMSAIQAALMTLLQ-AGDHVVASRSLFGSTVGFISEILPRF  117 (380)
T ss_pred             eecCCCch-HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEecCCcchHHHHHHHHHHHh
Confidence            34565554 788888888876    2    25788899999999999999884 99999999988864    34466778


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.+++.++.+       |++++++++++      ++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|...
T Consensus       118 g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~  181 (380)
T TIGR01325       118 GIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATP  181 (380)
T ss_pred             CCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccc
Confidence            9998888653       68888888865      7899999999999999988   899999999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                      .+..     ++     .++   .|   |++.|+||.++| |.++
T Consensus       182 ~~~~-----pl-----~~g---~D---ivv~S~sK~l~g~g~~~  209 (380)
T TIGR01325       182 VLQQ-----PL-----KLG---AD---VVVYSATKHIDGQGRVM  209 (380)
T ss_pred             ccCC-----ch-----hhC---CC---EEEeeccceecCCCCeE
Confidence            4322     11     111   23   788899999987 5666

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.75  E-value=1.8e-17  Score=162.14  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc---cCCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~---~~~gd  216 (360)
                      -+|.+++++.+.+........ .|     ..+....+++.+.+..    ..+++++++|+++|+..+++.+.   .++||
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~~G~  117 (389)
T PRK01278         48 AHPHLVEALKEQAEKLWHVSN-LY-----RIPEQERLAERLVENS----FADKVFFTNSGAEAVECAIKTARRYHYGKGH  117 (389)
T ss_pred             CCHHHHHHHHHHHHhcCcccc-cc-----CChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence            478899999888876322111 12     1233445556655432    24689999999999999988762   13666


Q ss_pred             ----EEEEcCCCchHHHHHHHHcCCeEEEeecC-C-CCCcC----CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc-c
Q 018147          217 ----GILCPIPQYPLYSASIALHGGTLVPYYLD-E-ATGWG----LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-Q  285 (360)
Q Consensus       217 ----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~----~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG-~  285 (360)
                          +|++.++.|+.+.......+......... + ..++.    .|++.+++++++      ++++|+++.++||+| .
T Consensus       118 ~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~avivep~~~~~G~~  191 (389)
T PRK01278        118 PERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP------NTAAILIEPIQGEGGIR  191 (389)
T ss_pred             CCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC------CeEEEEEecccCCCCCc
Confidence                89999999998877666655443222110 0 11122    589999998865      788888887788888 7


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++.+.+++|.++|++||+++|+||+|.++.+.+.  ..... . .++   .+|     +.+|||++++|+|+||
T Consensus       192 ~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~-~-~~~---~pd-----i~t~sK~l~~G~~ig~  254 (389)
T PRK01278        192 PAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LFAHE-W-AGV---TPD-----IMAVAKGIGGGFPLGA  254 (389)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--ceeec-c-cCC---CCC-----EEEEehhccCCcceEE
Confidence            88999999999999999999999999999766553  21111 1 011   144     3589999999999998

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.75  E-value=3.6e-17  Score=160.80  Aligned_cols=210  Identities=16%  Similarity=0.121  Sum_probs=142.5

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      .+++|+..+    ..+ .++.+++++.+.+...     ..|....+..++...+++.+.+.+|.  ..+++++++|+++|
T Consensus        36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea  108 (413)
T cd00610          36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL-----THFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEA  108 (413)
T ss_pred             CEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC-----cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHH
Confidence            345555543    223 6888999998888653     23444334566777777777776653  57899999999999


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcC-------------CeEEEeecCCC----CCcCCCHHHHHHHHHHH
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEA----TGWGLETSEVKKQLEAA  264 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~----~~~~~d~~~L~~~i~~~  264 (360)
                      +..+++.+.. .+++.|++.+++|..+.......+             ..++.+|.+..    ..+..|++.|++.+++.
T Consensus       109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  188 (413)
T cd00610         109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH  188 (413)
T ss_pred             HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence            9999998741 368999999999998655443322             23455555421    12455889998888642


Q ss_pred             HhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceE
Q 018147          265 KAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (360)
Q Consensus       265 ~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  342 (360)
                         ..+++ +++++| +|++|.++ +.+.+++|.++|+++|+++|+||+|.++...+.  ...+ ..   . +..+|   
T Consensus       189 ---~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~~~~-~~---~-~~~~d---  254 (413)
T cd00610         189 ---PEEVA-AVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--MFAF-EH---F-GVEPD---  254 (413)
T ss_pred             ---CCCEE-EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhhH-hh---c-CCCCC---
Confidence               11344 444555 66779876 677799999999999999999999998644332  1111 11   1 11234   


Q ss_pred             EEEeccCcCccccccccC
Q 018147          343 VSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       343 i~~~S~SK~~~g~~RvGw  360 (360)
                        +.||||++++|+|+||
T Consensus       255 --~~t~sK~l~~g~~~g~  270 (413)
T cd00610         255 --IVTLGKGLGGGLPLGA  270 (413)
T ss_pred             --eEEEcccccCccccEE
Confidence              3589999999999998

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.75  E-value=3.2e-17  Score=140.09  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH-HHHHHcCCeEEEeecCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS-ASIALHGGTLVPYYLDEA  247 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~  247 (360)
                      +.++++.+++++.      .+.+++++++|+++|+..++..+.. ++++|+++.+.|+... ..+...|++++.++.+..
T Consensus         2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~   74 (170)
T cd01494           2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLG-PGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCC-CCCEEEEeecccceehhhHHHhcCCEEEEeccCCC
Confidence            3578888888872      5678999999999999999999984 8999999999999888 888889999999988765


Q ss_pred             CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHH
Q 018147          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~  327 (360)
                      .....+.+.+++...     ..+++++++++|+||+|...+   .++|.++|+++|+++|+|++|..+......     .
T Consensus        75 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-----~  141 (170)
T cd01494          75 GYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-----V  141 (170)
T ss_pred             Cccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-----c
Confidence            433333334443322     237899999999999999988   588889999999999999999997665421     0


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .. ..     .+ ..+++.|++|.|++ -++||
T Consensus       142 ~~-~~-----~~-~d~~~~s~~K~~~~-~~~G~  166 (170)
T cd01494         142 LI-PE-----GG-ADVVTFSLHKNLGG-EGGGV  166 (170)
T ss_pred             cc-cc-----cc-CCEEEEEcccccCC-CceEE
Confidence            00 10     11 23788999999988 78876

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.75  E-value=6.3e-17  Score=158.94  Aligned_cols=199  Identities=12%  Similarity=0.025  Sum_probs=145.3

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH
Q 018147          131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l  210 (360)
                      +-+..+|...|+.+++++.+..        ..|. ..+..++++++++.+.+.+|.+ ..+.+++++|+++++..++..+
T Consensus        11 ~l~~pGP~~~~~~V~~a~~~~~--------~~~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~   80 (401)
T PLN02409         11 HLFVPGPVNIPERVLRAMNRPN--------EDHR-SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNT   80 (401)
T ss_pred             eeccCCCCCCCHHHHHHhcCCC--------CCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhc
Confidence            3455667777888887764321        1222 3457889999999998888853 2346788889999999999888


Q ss_pred             ccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          211 IRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       211 ~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      + ++||+|++.++.|..+  ...++.+|++++.++.+.+.  .+|++++++++++.  ...++++|++++++||||.+++
T Consensus        81 ~-~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~--~~~~~~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~  155 (401)
T PLN02409         81 L-SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ--GADLDILKSKLRQD--TNHKIKAVCVVHNETSTGVTND  155 (401)
T ss_pred             C-CCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC--CCCHHHHHHHHhhC--cCCCccEEEEEeecccccccCC
Confidence            8 4999999999988654  56778889999999987542  57999999998751  0016899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+++.++++ |+++|+++|+|+++.-...     ...+    ..++   -|   +++.|.+|.|++..++||
T Consensus       156 ~~~i~~l~~-~~~~g~~~vvD~v~s~g~~-----~id~----~~~~---~D---~~~~s~~K~l~~P~G~G~  211 (401)
T PLN02409        156 LAGVRKLLD-CAQHPALLLVDGVSSIGAL-----DFRM----DEWG---VD---VALTGSQKALSLPTGLGI  211 (401)
T ss_pred             HHHHHHHHh-hhccCcEEEEEcccccCCc-----cccc----cccC---cc---EEEEcCccccCcCCCcce
Confidence            555555544 9999999999999873111     1111    1111   12   666777999987667887

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.75  E-value=3.3e-17  Score=160.75  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=124.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCC----CchHHHHHHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP----QYPLYSASIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P----~y~~~~~~~~~~  235 (360)
                      ...|+.+. ..+|++.+|++.    |    .++.+++++++.|+..++.+++ .+||+|+++..    +|..+...++..
T Consensus        64 Y~r~~~p~-~~~le~~lA~l~----g----~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~  133 (403)
T PRK07810         64 YSRYGNPT-VSMFEERLRLIE----G----AEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRW  133 (403)
T ss_pred             eeCCCCch-HHHHHHHHHHHh----C----CCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHc
Confidence            44566655 788888888886    2    3478888888899999998888 49999998874    445566677888


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.       .|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       134 G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~  197 (403)
T PRK07810        134 GVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATP  197 (403)
T ss_pred             CcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence            999998863       278999999876      7999999999999999997   999999999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                      .+...     +     .++   .|   |+++|++|.++| |.++
T Consensus       198 ~~~~~-----~-----~~g---aD---ivv~S~tK~l~g~g~~~  225 (403)
T PRK07810        198 LLQRG-----L-----PLG---AD---VVVYSGTKHIDGQGRVL  225 (403)
T ss_pred             ccCCh-----h-----hcC---Cc---EEEccCCceecCCcCce
Confidence            44321     1     111   23   789999999986 6676

>PRK14012 cysteine desulfurase; Provisional

Probab=99.75  E-value=3.7e-17  Score=160.71  Aligned_cols=158  Identities=15%  Similarity=0.214  Sum_probs=122.8

Q ss_pred             CCCHHHHHHHHHHHH--cCCCCCCCC------CCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH
Q 018147          139 LFSADSIERAWQILD--QIPGRATGA------YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~--~~~~~~~~~------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l  210 (360)
                      .+|+.+++++.+.+.  .... ....      +.......++|+.+++++      ++++++|++++|+++++..++.++
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ia~~~------g~~~~~v~~~~g~t~al~~~l~~l   86 (404)
T PRK14012         14 PVDPRVAEKMMPYLTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLI------GADPREIVFTSGATESDNLAIKGA   86 (404)
T ss_pred             CCCHHHHHHHHHHHHhcccCc-CCCchhhHHHHHHHHHHHHHHHHHHHHc------CcCcCeEEEeCCHHHHHHHHHHHH
Confidence            568888888877775  2111 0111      111123556677777776      456788999999999999988776


Q ss_pred             c---cCCCCEEEEcCCCchHHHHHHH---HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          211 I---RSENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       211 ~---~~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      .   ..+||+|+++.++|+.+...++   ..|++++.++.+++  +.+|+++|++++++      +++++++++++||||
T Consensus        87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~--g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG  158 (404)
T PRK14012         87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSN--GIIDLEKLEAAMRD------DTILVSIMHVNNEIG  158 (404)
T ss_pred             HHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCC--CcCCHHHHHHhcCC------CCEEEEEECcCCCcc
Confidence            4   2489999999999987755443   45999999988743  57899999999976      789999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .+.+   +++|.++|+++|+++|+|+++..
T Consensus       159 ~~~~---~~~I~~la~~~g~~vivD~a~~~  185 (404)
T PRK14012        159 VIQD---IAAIGEICRERGIIFHVDAAQSV  185 (404)
T ss_pred             chhh---HHHHHHHHHHcCCEEEEEcchhc
Confidence            9998   88999999999999999999864

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.74  E-value=1e-16  Score=156.22  Aligned_cols=162  Identities=15%  Similarity=0.234  Sum_probs=125.9

Q ss_pred             CCCHHHHHHHHHHHHcCCC--CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc-----
Q 018147          139 LFSADSIERAWQILDQIPG--RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-----  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~--~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~-----  211 (360)
                      ..++.+++++.+.+.+...  ...+.|+. .+...++++++++... .|. .++++|++|+|+++++..+++++.     
T Consensus        10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~~-~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~   86 (382)
T TIGR03403        10 MLDPKVKELMDPFFCDIYGNPNSLHQFGT-ATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEIL   86 (382)
T ss_pred             CCCHHHHHHHHHHHHhcCcCCccccHHHH-HHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence            4577899998887765321  12334443 4577888888888753 231 267899999999999999998763     


Q ss_pred             cCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          212 RSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      ...+++|+++...|+.+...   ++..|++++.++++++  +.+|++++++++++      +++++++++|+||||.+++
T Consensus        87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~--g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~  158 (382)
T TIGR03403        87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ--GTITAEQVREAITE------KTALVSVMWANNETGMIFP  158 (382)
T ss_pred             cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC--CCCCHHHHHHhccc------CCeEEEEEcccCCCccccC
Confidence            22357899998777765543   5568999999998754  47899999999876      7899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                         +++|.++|+++|+++|+|+++..
T Consensus       159 ---~~~I~~la~~~g~~~ivD~a~~~  181 (382)
T TIGR03403       159 ---IKEIGEICKERGVLFHTDAVQAI  181 (382)
T ss_pred             ---HHHHHHHHHHcCCEEEEechhhc
Confidence               77889999999999999999764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.74  E-value=6.2e-17  Score=158.13  Aligned_cols=159  Identities=14%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----c
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----H  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~  235 (360)
                      ...|+.+. ..+|++.+|+++    |    .++.+++++++.|+..++.+++ .+||+|+++.|.|......+..    .
T Consensus        55 y~r~~~pt-~~~Le~~lA~l~----G----~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~~~~~~~~~~~~~  124 (386)
T PRK06767         55 YSRLGNPT-VKLFEERMAVLE----G----GEEALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGCTYGFLEVLEEKF  124 (386)
T ss_pred             ccCCCCcc-hHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHHHhhc
Confidence            34455554 688899998887    3    2344555555789999998888 4999999999988876554433    4


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.++..++       ..|++++++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|...
T Consensus       125 gi~~~~~~-------~~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~  188 (386)
T PRK06767        125 MITHSFCD-------METEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSP  188 (386)
T ss_pred             CeEEEEeC-------CCCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence            55554443       2378999998876      7999999999999999998   888999999999999999999753


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                      .+..     ++     ..+   .|   ++++|+||.++| |.|+ ||
T Consensus       189 ~~~~-----pl-----~~g---~D---iv~~S~sK~l~g~g~~~gG~  219 (386)
T PRK06767        189 YLQR-----PL-----ELG---CD---AVVHSATKYIGGHGDVVAGV  219 (386)
T ss_pred             ccCC-----ch-----hcC---Cc---EEEecCcceecCCCCceeEE
Confidence            3321     11     011   13   788999999976 7775 64

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.73  E-value=1.2e-16  Score=155.50  Aligned_cols=150  Identities=17%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      ..+.++++.+.+....     .|    |...+++++++++++.+|    .+++++++|+++|+.+++.++..++||+|++
T Consensus        10 ~~~~~~~~~~~l~~~~-----~~----g~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv   76 (375)
T PRK11706         10 VGTELDYIQQAMSSGK-----LC----GDGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIM   76 (375)
T ss_pred             CHHHHHHHHHHHHcCC-----cc----CCCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEE
Confidence            4555666666665421     12    234567777777776655    4689999999999999887663259999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|+.+...+...|++++.++++++ +|.+|++++++++++      ++|+|+++|   ++|...+   +++|.++|+
T Consensus        77 ~~~t~~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~------~tk~i~~~~---~~G~~~~---~~~i~~la~  143 (375)
T PRK11706         77 PSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITP------KTRAIVPVH---YAGVACE---MDTIMALAK  143 (375)
T ss_pred             CCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCC------CCeEEEEeC---CCCCccC---HHHHHHHHH
Confidence            999999999999999999999999865 578999999999876      789988764   6898766   789999999


Q ss_pred             HcCCEEEEccCCCCCc
Q 018147          301 KEGLVLLADEVYQENV  316 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~  316 (360)
                      ++|++||+|++|+...
T Consensus       144 ~~~i~vIeD~a~a~g~  159 (375)
T PRK11706        144 KHNLFVVEDAAQGVMS  159 (375)
T ss_pred             HcCCEEEEECcccccc
Confidence            9999999999998865

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.73  E-value=5.1e-17  Score=158.33  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=118.8

Q ss_pred             CCCCCC--cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHH
Q 018147          161 GAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IAL  234 (360)
Q Consensus       161 ~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~  234 (360)
                      ..|+..  .....|++.+|++.    |    .+++++++|+++|+..++.++++ +||+|++++|.|.++...    +..
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le----~----~~~~~~~~sG~~Ai~~~l~all~-~GD~Vvv~~~~Y~~t~~l~~~~l~~  123 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELE----G----GAGTALYPSGAAAISNALLSFLK-AGDHLLMVDSCYEPTRDLCDKILKG  123 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEECCCcHHHHHHHHHhhhh
Confidence            346652  34579999999885    1    25789999999999999999984 999999999999877653    345


Q ss_pred             cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       235 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .|.++..++..       +.+.+++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|..
T Consensus       124 ~Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        124 FGIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             cceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCccc
Confidence            68887766432       45778888766      7999999999999988754   99999999999999999999986


Q ss_pred             CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       315 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .+...     ++     .++   -|   |+++|.+|.++|
T Consensus       188 p~~~~-----Pl-----~~G---aD---ivv~S~tK~l~G  211 (394)
T PRK09028        188 PINSR-----PF-----EMG---VD---ISIQAATKYIVG  211 (394)
T ss_pred             cccCC-----cc-----ccC---ce---EEEEeCCeEecC
Confidence            33211     11     122   23   899999998876

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.73  E-value=2.7e-16  Score=154.85  Aligned_cols=199  Identities=13%  Similarity=0.061  Sum_probs=134.9

Q ss_pred             CccccCcc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          129 SILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       129 ~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      +++++..+   +...++.+++++.+.+......   ....|+......+|++.+|+++    |   .++.|++++|+ ++
T Consensus        47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g---~~~~i~~~sG~-~a  118 (410)
T PRK13392         47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----G---KESALLFTSGY-VS  118 (410)
T ss_pred             eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----C---CCCEEEECcHH-HH
Confidence            35555555   6677999999998888764310   0112333323567788887776    4   25677778775 56


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      ...++..+.. .+||.|++....|..+...++..|+++..++..       |.+.+++.++..  ...++++|++++|+|
T Consensus       119 ~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~--~~~~t~~v~i~~~~n  189 (410)
T PRK13392        119 NDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASV--DPDRPKLIAFESVYS  189 (410)
T ss_pred             HHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhc--cCCCCEEEEEeCCCC
Confidence            6666666642 378988888778888877888889987766421       456666666532  112688999999999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      |||.+.+   +++|.++|+++|+++|+||+|....++..  ...+... .++.   ++ -.|+++||||+|+.
T Consensus       190 ~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~--g~g~~~~-~~~~---~~-~div~~tlsK~~g~  252 (410)
T PRK13392        190 MDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR--GGGIAER-DGLM---DR-IDMIQGTLAKAFGC  252 (410)
T ss_pred             CCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC--CCchhhh-ccCC---CC-CcEEEEEChHhhhc
Confidence            9999998   88999999999999999999995555432  2222211 1111   11 12788999998854

>PLN02483 serine palmitoyltransferase

Probab=99.73  E-value=2.4e-16  Score=158.24  Aligned_cols=186  Identities=15%  Similarity=0.126  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          144 SIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       144 v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      ..+++.+.+.+.+.   .....|+...+..++++.+|+++.       .++.|++++|....+ .++.+++ ++||.|++
T Consensus       120 ~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~~an~-~~i~al~-~~Gd~Vi~  190 (489)
T PLN02483        120 CTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMGYATNS-TIIPALI-GKGGLIIS  190 (489)
T ss_pred             HHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCHHHHHH-HHHHHhC-CCCCEEEE
Confidence            34444444444321   134458888889999999999982       356788888755544 6677787 59999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC-CC-----ccEEEEecC-CCCcccCCCHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG-IT-----VRALVVINP-GNPTGQVLAEENQR  293 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g-~~-----~k~iil~~P-~NPTG~~~~~~~l~  293 (360)
                      +.|+|+.+...++..|++++.++..       |++.+++.+++....+ ++     .++++++++ .|++|.+.+   ++
T Consensus       191 d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~  260 (489)
T PLN02483        191 DSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LP  260 (489)
T ss_pred             cchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HH
Confidence            9999999999999999999998753       4677777776432211 12     366777755 699999887   99


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +|+++|+++|+++|+||+|....++..  ...+.... ++..  .+ ..|+++||||+|++
T Consensus       261 ~I~~la~~~~~~livDEa~s~g~~G~~--G~g~~~~~-~v~~--~~-~dI~~~SfSKs~g~  315 (489)
T PLN02483        261 EIVAVCKKYKAYVYLDEAHSIGAVGKT--GRGVCELL-GVDP--AD-VDIMMGTFTKSFGS  315 (489)
T ss_pred             HHHHHHHHcCCEEEEECcCccCccCCC--CCchHHhc-CCCc--cc-CcEEEEecchhccc
Confidence            999999999999999999985433321  11121211 1110  12 46899999999864

>PRK05939 hypothetical protein; Provisional

Probab=99.73  E-value=7.4e-17  Score=157.87  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCC
Q 018147          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEA  247 (360)
Q Consensus       171 ~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~  247 (360)
                      .|.+.+|++.    |    .+..+++++++.|+..++.+++ ++||+|+++.+.|+.+.   ..++..|++++.++..  
T Consensus        51 ~lE~~la~le----g----~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~--  119 (397)
T PRK05939         51 ALEAKITKME----G----GVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT--  119 (397)
T ss_pred             HHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC--
Confidence            7777787775    2    2334555555899999999888 49999999999997543   3566789999888652  


Q ss_pred             CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC-ccCCCCCCCCH
Q 018147          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKFHSF  326 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~-~~~~~~~~~s~  326 (360)
                           |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|... .++..      
T Consensus       120 -----d~e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~~------  179 (397)
T PRK05939        120 -----DVQNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWLFRPK------  179 (397)
T ss_pred             -----CHHHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccccCcc------
Confidence                 78999998876      7999999999999999854   999999999999999999998642 12110      


Q ss_pred             HHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          327 KKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       327 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                           .++      .-|+++|+||.++| |.++||
T Consensus       180 -----~~g------aDivv~S~sK~~~g~g~~igg  203 (397)
T PRK05939        180 -----DVG------ASLVINSLSKYIAGHGNALGG  203 (397)
T ss_pred             -----ccC------CEEEEecCeecccCCCCeEEE
Confidence                 111      24899999999987 888876

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.72  E-value=9e-17  Score=155.89  Aligned_cols=155  Identities=16%  Similarity=0.183  Sum_probs=116.7

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~  235 (360)
                      ...|+.+ ...+|++++|++.         .++.++++++++|+..++.+++ ++||+|+++.|.|..+...+    +..
T Consensus        45 y~ry~~p-~~~~Le~~lA~l~---------~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~  113 (366)
T PRK07582         45 YGRASNP-TWRALEAALGELE---------GAEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPL  113 (366)
T ss_pred             eECCCCc-cHHHHHHHHHHHc---------CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence            4456554 4899999999885         2345556666789999999888 49999999999998886644    447


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.+++      .+    .+.+      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       114 G~~v~~v~~~~~------~~----~~~~------~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~  174 (366)
T PRK07582        114 GVTVREAPTAGM------AE----AALA------GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP  174 (366)
T ss_pred             eEEEEEECCCCh------HH----Hhcc------CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc
Confidence            999999886532      11    1222      6899999999999998877   999999999999999999999642


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                        .+.   .++     +++   .|   ++++|+||.++|  |+|+||
T Consensus       175 --~~~---~p~-----~~g---~D---ivv~S~sK~l~G~~g~~~G~  205 (366)
T PRK07582        175 --LGQ---RPL-----ELG---AD---LVVASDTKALTGHSDLLLGY  205 (366)
T ss_pred             --ccc---Cch-----hcC---Cc---EEEecccccccCCCCeeEEE
Confidence              121   111     111   23   788999999876  799997

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=1.6e-16  Score=156.99  Aligned_cols=151  Identities=18%  Similarity=0.201  Sum_probs=119.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~  244 (360)
                      ...|.+.+|++.    |    .+..++++|+++|+..++..++ .+||+|+++.+.|+.    +...++..|++++.++.
T Consensus        66 ~~~Le~~lA~le----g----~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~  136 (431)
T PRK08248         66 TDVFEKRIAALE----G----GIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP  136 (431)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence            566777777765    3    4678889999999999998888 499999999998864    34556778999998875


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                             .|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..- +.    ..
T Consensus       137 -------~d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~----~~  195 (431)
T PRK08248        137 -------SDPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YL----LR  195 (431)
T ss_pred             -------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-cc----CC
Confidence                   278999998876      7999999999999999999   789999999999999999998631 11    11


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      ++     .++   .   -|+++|++|.++| |.++|+
T Consensus       196 pl-----~~g---a---Divv~S~tK~lgg~g~~~Gg  221 (431)
T PRK08248        196 PI-----EHG---A---DIVVHSATKFIGGHGTSIGG  221 (431)
T ss_pred             hh-----HcC---C---CEEEEcCccccCCCCCceEE
Confidence            11     111   2   3888999999987 778763

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=2.9e-16  Score=154.44  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  244 (360)
                      ...|.+.+|++.    |    .+..+++++++.|+.+++.+++ .+||+|+++.+.|......    +...|+++..+..
T Consensus        63 v~~lE~~la~le----g----~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         63 LAAFEQKLAELE----G----GVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            677777887776    2    3457889999999999999888 4999999999999865554    6778999988843


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                            .+|+++++++|++      ++|+|++.+|+||++.+.+   +++|+++|+++|+++|+|++|..-.+..     
T Consensus       134 ------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~~~-----  193 (432)
T PRK06702        134 ------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYLCQ-----  193 (432)
T ss_pred             ------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhhCC-----
Confidence                  4689999999987      8999999999999999999   9999999999999999999985311111     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCcc------ccccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRY------FHFFS  358 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~------g~~Rv  358 (360)
                      +   +  ..+   -|   |+++|+||.++      ||+++
T Consensus       194 p---l--~~G---AD---Ivv~S~TKy~~Ghsd~l~G~v~  222 (432)
T PRK06702        194 A---F--EHG---AN---IIVHSTTKYIDGHASSLGGIVI  222 (432)
T ss_pred             h---h--hcC---CC---EEEEccccccCCCcceeceEEE
Confidence            1   1  111   12   89999999544      46665

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.72  E-value=1.7e-16  Score=154.79  Aligned_cols=146  Identities=16%  Similarity=0.219  Sum_probs=115.2

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH---HcCCeEEEeec
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA---LHGGTLVPYYL  244 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~  244 (360)
                      ...+|++.+|+++    |    .+++++++|+++|+..++..++. +||+|+++.|.|..+...++   ..|+++..+  
T Consensus        54 ~~~~lE~~lA~l~----g----~~~~l~~~sG~~Ai~~~l~~ll~-~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~--  122 (385)
T PRK08574         54 TLRPLEEALAKLE----G----GVDALAFNSGMAAISTLFFSLLK-AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLA--  122 (385)
T ss_pred             cHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEcCCCchhHHHHHHHhhccCcEEEEE--
Confidence            3788999999987    2    35788889999999999998884 99999999999998776653   457776654  


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                            .+|++++++++++.     ++|+|++++|+||||.+++   +++|+++|+++|+++|+|++|.......     
T Consensus       123 ------~~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~-----  183 (385)
T PRK08574        123 ------YPSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLYR-----  183 (385)
T ss_pred             ------CCCHHHHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC-----
Confidence                  23678888887642     6899999999999999999   8899999999999999999996432211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     ..+   .   -+++.|+||.++|
T Consensus       184 ~l-----~~G---a---Divv~S~sK~l~g  202 (385)
T PRK08574        184 PL-----RHG---A---DFVVHSLTKYIAG  202 (385)
T ss_pred             hh-----hhC---C---cEEEeeCceeecC
Confidence            11     111   1   3889999999875

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.72  E-value=2.6e-16  Score=153.45  Aligned_cols=152  Identities=15%  Similarity=0.203  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~V  218 (360)
                      +.++.++++.+.+.+.    ...+++  ...+|++++|+++    |    .+++++++|+++|+.+++.++ + ++||+|
T Consensus        12 ~~~~e~~~~~~~l~~~----~~~~g~--~~~~le~~la~~~----g----~~~~v~~~sgt~al~lal~al~~-~~Gd~V   76 (379)
T PRK11658         12 MGDEELAAVKEVLRSG----WITTGP--KNQALEQAFCQLT----G----NQHAIAVSSATAGMHITLMALGI-GPGDEV   76 (379)
T ss_pred             CCHHHHHHHHHHHHcC----CccCCH--hHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHcCC-CCCCEE
Confidence            3566677777777652    322333  4799999999998    2    246888999999999999998 6 599999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.++|..+...+...|++++.++++.+ +|.+|++.+++++++      ++|+|+   |.||+|...+   +++|.++
T Consensus        77 iv~~~~~~~~~~~~~~~G~~~v~vd~~~~-~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~  143 (379)
T PRK11658         77 ITPSLTWVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAI  143 (379)
T ss_pred             EECCCcHHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHH
Confidence            99999999999999999999999998764 478999999999876      788887   5567899877   8899999


Q ss_pred             HHHcCCEEEEccCCCC-CccCC
Q 018147          299 CKKEGLVLLADEVYQE-NVYVP  319 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~-~~~~~  319 (360)
                      |+++|+++|+|++|.. ..+.+
T Consensus       144 a~~~gi~vi~D~a~a~g~~~~~  165 (379)
T PRK11658        144 GERYGIPVIEDAAHAVGTYYKG  165 (379)
T ss_pred             HHHcCCeEEEECCCccCCeECC
Confidence            9999999999999984 34443

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.71  E-value=1.8e-16  Score=154.05  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=120.4

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEEEee
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYY  243 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~  243 (360)
                      -..+|++.++++.    |    .++.++++++++|+..++.+++. +||+|+++.+.|.....    .++..|+++..++
T Consensus        41 ~~~~le~~la~l~----g----~~~a~~~~sG~~Ai~~~l~~l~~-~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~  111 (369)
T cd00614          41 TVDALEKKLAALE----G----GEAALAFSSGMAAISTVLLALLK-AGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVD  111 (369)
T ss_pred             hHHHHHHHHHHHH----C----CCCEEEEcCHHHHHHHHHHHHcC-CCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeC
Confidence            3678888888876    3    25677788889999999999984 99999999999987543    3456788888876


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+       |++++++++++      ++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|++|....+...   
T Consensus       112 ~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~~---  172 (369)
T cd00614         112 PD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQRP---  172 (369)
T ss_pred             CC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCCh---
Confidence            43       58889888865      7999999999999999998   88999999999999999999987544211   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                        +     .++   .   -++++|+||.++|  +++.||
T Consensus       173 --~-----~~g---~---Divv~S~tK~l~g~~~~~gG~  198 (369)
T cd00614         173 --L-----ELG---A---DIVVHSATKYIGGHSDVIAGV  198 (369)
T ss_pred             --h-----hhC---C---cEEEeccceeccCCCCceEEE
Confidence              1     111   2   3889999999986  477776

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.71  E-value=3.2e-16  Score=154.65  Aligned_cols=150  Identities=18%  Similarity=0.181  Sum_probs=115.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~  244 (360)
                      ...|++.+|++.    |    .+..++++++++|+..++.+++. +||+|+++.+.|......+..    .|.++..++ 
T Consensus        60 ~~~Le~~lA~l~----g----~~~~l~~ssG~~Ai~~al~al~~-~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d-  129 (425)
T PRK06084         60 NDVLEQRVAALE----G----GVGALAVASGMAAITYAIQTIAE-AGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA-  129 (425)
T ss_pred             HHHHHHHHHHHh----C----CCceeEehhHHHHHHHHHHHHhC-CCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC-
Confidence            567777777775    3    24567788888999999999985 999999999999854444332    465655554 


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                            ..|++++++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......     
T Consensus       130 ------~~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~-----  189 (425)
T PRK06084        130 ------HDDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLCR-----  189 (425)
T ss_pred             ------CCCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence                  2379999999976      7999999999999999998   8999999999999999999998533211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      ++     ..+   .|   |+++|++|.++| |.++|
T Consensus       190 p~-----~~g---aD---ivv~S~tK~l~G~g~~~g  214 (425)
T PRK06084        190 PF-----EHG---AD---IVVHSLTKYIGGHGTSIG  214 (425)
T ss_pred             hh-----hcC---CC---EEEECchhccccccccee
Confidence            11     111   23   899999999976 67666

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.71  E-value=6.3e-16  Score=153.90  Aligned_cols=124  Identities=17%  Similarity=0.241  Sum_probs=103.6

Q ss_pred             HHHHHHHH---HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEe
Q 018147          170 KGLRDTIA---AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPY  242 (360)
Q Consensus       170 ~~lr~~ia---~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v  242 (360)
                      ..++++++   +++.+.+|.  +++++++|+|+++++..++.++...+||+|+++.+.|+.|...++.    .|++++.+
T Consensus       108 ~g~~~~~~e~~~~la~l~g~--~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v  185 (447)
T PRK00451        108 QGTLQAIFEYQTMICELTGM--DVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV  185 (447)
T ss_pred             hHHHHHHHHHHHHHHHHhCC--CcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence            33666666   444777774  5668999999999999988887424899999999999998887665    69999999


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +++++   .+|+++|++++++      ++++|++++| ||||.+.+   +++|+++|+++|+++|+
T Consensus       186 ~~~~~---~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv  238 (447)
T PRK00451        186 PYEDG---VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIV  238 (447)
T ss_pred             cCCCC---CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEE
Confidence            98753   7899999999876      7999999999 89999977   99999999999999988

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.70  E-value=7.2e-16  Score=148.70  Aligned_cols=158  Identities=16%  Similarity=0.242  Sum_probs=120.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCC------cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHS------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~------~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      .+|+.+++++.+.+..... ....+...      .-..++|+.+++++      ++++++|++|+|+++++..++..+..
T Consensus         9 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~   81 (353)
T TIGR03235         9 PIDPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEAL------GADTEEVIFTSGATESNNLAILGLAR   81 (353)
T ss_pred             CCCHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            5688899998887754211 01111111      11456777777766      35788999999999999999888752


Q ss_pred             ---CCC-CEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          213 ---SEN-DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       213 ---~~g-d~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                         .+| +.|++....|+.+..   .++..|++++.++++++  +.+|+++|++++++      ++++|++++++||||.
T Consensus        82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~  153 (353)
T TIGR03235        82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDES--GRIDVDELADAIRP------DTLLVSIMHVNNETGS  153 (353)
T ss_pred             hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhCCC------CCEEEEEEcccCCcee
Confidence               255 778888877775543   44557999999998754  47899999998865      6899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +++   +++|.++|+++|+++|+|+++.-
T Consensus       154 ~~~---~~~I~~l~~~~~~~~ivD~a~~~  179 (353)
T TIGR03235       154 IQP---IREIAEVLEAHEAFFHVDAAQVV  179 (353)
T ss_pred             ccC---HHHHHHHHHHcCCEEEEEchhhc
Confidence            998   89999999999999999999764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.70  E-value=7.8e-16  Score=147.96  Aligned_cols=190  Identities=15%  Similarity=0.073  Sum_probs=131.7

Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      +|..+++.+.+++.......    ...|.  .-...+|+.+++++    |.+-+...|++++|+++++..++..++. +|
T Consensus         6 ~p~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~la~~~----~~~~~~~~i~~~~~gt~~l~~~~~~~~~-~~   74 (355)
T TIGR03301         6 GPLSTSATVRDAMLVDWCHW----DSEFN--DVTDQVRDRLLALA----GGDDNHTCVLLQGSGTFAVEATIGSLVP-RD   74 (355)
T ss_pred             CCCCCCHHHHHHhhhhccCC----CHHHH--HHHHHHHHHHHHHh----cCCCCCcEEEEeCCcHHHHHHHHHhccC-CC
Confidence            34566777777765522110    11232  22456666666665    4332223688899999999999999985 78


Q ss_pred             CEEEEcCC-CchH-HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          216 DGILCPIP-QYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       216 d~Vlv~~P-~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      |+|++..+ .|+. +...++..|.+++.++++.+  +.+|++++++++++.    ++++.+++++++||||.+.+   ++
T Consensus        75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~--~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~---~~  145 (355)
T TIGR03301        75 GKLLVLINGAYGERLAKICEYLGIPHTDLNFSEY--EPPDLNRIEEALAAD----PDITHVATVHHETTTGILNP---LE  145 (355)
T ss_pred             CeEEEECCCchhhHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHHhC----CCceEEEEEecCCcccchhH---HH
Confidence            88776654 4543 56677889999999988643  588999999998751    25667888899999999987   89


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|+++|+++|+++|+|+++..   +..  ..++...         + .-+++.|++|.++|..++||
T Consensus       146 ~i~~l~~~~~~~livD~~~s~---g~~--~~~~~~~---------~-~d~~~~s~~K~l~~~~G~g~  197 (355)
T TIGR03301       146 AIAKVARSHGAVLIVDAMSSF---GAI--PIDIEEL---------D-VDALIASANKCLEGVPGFGF  197 (355)
T ss_pred             HHHHHHHHcCCEEEEEecccc---CCc--ccchhhc---------C-ccEEEecCCcccccCCceeE
Confidence            999999999999999986653   221  1222211         1 23778999998876555676

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.70  E-value=8.9e-16  Score=148.85  Aligned_cols=193  Identities=13%  Similarity=0.019  Sum_probs=134.8

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      +..+|...++.+.+++.+....    ....|..  -..++|+.+++++    |.+-+.+.|++++|+++++..++..+..
T Consensus         9 ~~pgP~~~~~~~~~a~~~~~~~----~~~~~~~--~~~~~~~~l~~l~----~~~~~~~~i~~~~~gt~~l~~~~~~l~~   78 (368)
T PRK13479          9 LTPGPLTTSRTVREAMLRDWGS----WDDDFNA--LTASVRAKLVAIA----TGEEGYTCVPLQGSGTFSVEAAIGSLVP   78 (368)
T ss_pred             ecCCCCCCCHHHHHHhCCCCCC----CChHHHH--HHHHHHHHHHHHh----CCCCCceEEEEcCCcHHHHHHHHHhccC
Confidence            3445666677777665432210    0111332  3566666666665    4222235688999999999999999985


Q ss_pred             CCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          213 SENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                       +||.|+++.+.|...  ...++.+|++++.++++++  +.+|++++++++++.    ++++++++++|+||||...+  
T Consensus        79 -~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~--~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~--  149 (368)
T PRK13479         79 -RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED--EPPDAAEVEAALAAD----PRITHVALVHCETTTGILNP--  149 (368)
T ss_pred             -CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC--CCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccC--
Confidence             999999998887665  4777889999999998753  478999999988751    24678999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +++|.++|+++|+++|+| +|+.  ++..  ..++...       ..|   +++.|++|.+.|...+||
T Consensus       150 -~~~i~~l~~~~~~~livD-a~~~--~g~~--~~~~~~~-------~~d---~~v~s~~K~l~g~~G~G~  203 (368)
T PRK13479        150 -LDEIAAVAKRHGKRLIVD-AMSS--FGAI--PIDIAEL-------GID---ALISSANKCIEGVPGFGF  203 (368)
T ss_pred             -HHHHHHHHHHcCCEEEEE-cccc--cCCc--ccccccc-------Cce---EEEecCccccccCCCceE
Confidence             788999999999999999 5555  3322  1122111       123   566899998765444676

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.70  E-value=3.5e-16  Score=152.30  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=116.1

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEEEe
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPY  242 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v  242 (360)
                      .+....++.+++.+....|   .++.+ +++++++|+..++.++++ +||+|+++.|.|+++..    .++..|+++..+
T Consensus        60 R~gnPt~~~Le~~la~le~---~~~~v-~~sSG~aAi~~~l~all~-~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v  134 (395)
T PRK05967         60 TRGTPTTDALCKAIDALEG---SAGTI-LVPSGLAAVTVPFLGFLS-PGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYY  134 (395)
T ss_pred             CCCChHHHHHHHHHHHHhC---CCCEE-EECcHHHHHHHHHHHhcC-CCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEe
Confidence            3345556666666655433   23444 555578999999999985 99999999999998764    457789988887


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +..       +.+.+++++++      ++|+|++++|+||++.+   .++++|+++|+++|+++|+|++|...++...  
T Consensus       135 d~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~~~p--  196 (395)
T PRK05967        135 DPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLYFRP--  196 (395)
T ss_pred             CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCceecCh--
Confidence            532       34778888876      79999999999997654   5699999999999999999999987543321  


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc--ccccc
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSK  359 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvG  359 (360)
                         +     +++   -|   |+++|.+|.++|  +...|
T Consensus       197 ---l-----~~G---aD---ivv~S~tKy~~Gh~d~~~G  221 (395)
T PRK05967        197 ---L-----DFG---VD---ISIHAATKYPSGHSDILLG  221 (395)
T ss_pred             ---h-----HcC---CC---EEEEecccccCCCCCeeEE
Confidence               1     122   23   899999999877  44444

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.69  E-value=1.1e-15  Score=148.70  Aligned_cols=159  Identities=18%  Similarity=0.295  Sum_probs=119.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCC----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--  212 (360)
                      .+|+.+++++.+.+.+........+..    ..-+.++|+.+++++    |  +++++|++|+|+++++..++..+..  
T Consensus        10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~t~~~t~a~~~al~~~~~~~   83 (379)
T TIGR03402        10 RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----G--AEPDEIIFTSGGTESDNTAIKSALAAQ   83 (379)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHHhc
Confidence            567889998888776431100001110    112345556666655    4  5688999999999999999887641  


Q ss_pred             CCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          213 SENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      .+||.|++....|+.+...   ++..|.+++.++++.+  +.+|++++++++++      +++++++++++||||.+++ 
T Consensus        84 ~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~-  154 (379)
T TIGR03402        84 PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE--GRLDLEELRAAITD------DTALVSVMWANNETGTIFP-  154 (379)
T ss_pred             CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC--CcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc-
Confidence            3578999999888876543   4446999999988654  46899999999876      7899999999999999999 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                        +++|.++|+++|+++|+|+++..
T Consensus       155 --~~~I~~l~~~~g~~vivD~~~~~  177 (379)
T TIGR03402       155 --IEEIGEIAKERGALFHTDAVQAV  177 (379)
T ss_pred             --HHHHHHHHHHcCCEEEEECcccc
Confidence              67899999999999999999874

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.69  E-value=6.3e-16  Score=150.58  Aligned_cols=160  Identities=16%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHG  236 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g  236 (360)
                      ..|+.. |.+. ++++.+.+.+.+|    .++++++++++.++..++. ++ ++||+|+++.+.|..+..    .+...|
T Consensus        39 ~~Y~r~-~~p~-~~~le~~la~l~g----~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G  110 (378)
T TIGR01329        39 YDYTRS-GNPT-RTALESLLAKLDK----ADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPRSG  110 (378)
T ss_pred             CccCCC-CChH-HHHHHHHHHHHhC----CCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHHcC
Confidence            346554 2222 3444444444444    2566777777889998876 66 599999999999987654    345579


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++++.+++.       |++++++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       111 ~~v~~vd~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~  174 (378)
T TIGR01329       111 VVVVHVDTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL  174 (378)
T ss_pred             cEEEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc
Confidence            999988753       78999998875      7999999999999999998   9999999999999999999985422


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      .     ..++     .++   .|   ++++|++|.++|  +.+.||
T Consensus       175 ~-----~~~l-----~~g---~D---i~v~S~tK~l~G~~~~~~G~  204 (378)
T TIGR01329       175 L-----CNPL-----ELG---AD---IVYHSATKFLAGHSDVMAGV  204 (378)
T ss_pred             c-----CChh-----hcC---Cc---EEEEecceeccCCccceeEE
Confidence            1     1111     111   23   889999998875  466664

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.69  E-value=9.9e-16  Score=148.41  Aligned_cols=160  Identities=16%  Similarity=0.173  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc---CCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~---~~gd  216 (360)
                      ..+.+++++.+.+..... ....|   .|..++.+.+++.+.+.+|  ++++++++++|+++++..++..+..   .+||
T Consensus        32 ~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~  105 (371)
T PRK13520         32 PHPIARKAHEMFLETNLG-DPGLF---PGTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAARNLAKAEKP  105 (371)
T ss_pred             chHHHHHHHHHHHhcCCC-CcccC---ccHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence            356677888777765322 12223   2345555566666666556  4456789999999999998877653   1579


Q ss_pred             EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                      +|++.++.|..+...++..|.+++.++.+++  +.+|+++|++++++      ++++|++++++|+||.+.+   +++|.
T Consensus       106 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~  174 (371)
T PRK13520        106 NIVVPESAHFSFDKAADMLGVELRRAPLDDD--YRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELS  174 (371)
T ss_pred             eEEecCcchHHHHHHHHHcCceEEEecCCCC--CcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHH
Confidence            9999999999999999999999999988643  47899999999987      6778888889999999998   88999


Q ss_pred             HHHHHcCCEEEEccCCCCCc
Q 018147          297 DFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++|+++|+++++|++|..+.
T Consensus       175 ~l~~~~g~~livD~a~~~~~  194 (371)
T PRK13520        175 KIALENGIFLHVDAAFGGFV  194 (371)
T ss_pred             HHHHHcCCCEEEEecchhHH
Confidence            99999999999999998754

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.69  E-value=6.3e-16  Score=150.47  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=112.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch-HHHH---HHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSA---SIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~-~~~~---~~~~~  235 (360)
                      ...|+.+. ...|++.+|++.    |  . +..+++.+| +.++..++. ++ .+||+|+++.|.|+ .|..   .+...
T Consensus        44 y~r~~~p~-~~~Le~~lA~l~----g--~-~~~~~~~sG-~aai~~~~~-~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~  112 (377)
T PRK07671         44 YSRTGNPT-RAALEELIAVLE----G--G-HAGFAFGSG-MAAITAVMM-LF-SSGDHVILTDDVYGGTYRVMTKVLNRF  112 (377)
T ss_pred             cCCCCChH-HHHHHHHHHHHh----C--C-CceEEeCCH-HHHHHHHHH-Hh-CCCCEEEECCCccchHHHHHHHHHhcC
Confidence            33444444 677888888876    3  2 234555555 678877664 56 49999999999998 4432   34557


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.       .|++++++++++      ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|...
T Consensus       113 G~~v~~v~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~  176 (377)
T PRK07671        113 GIEHTFVDT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTP  176 (377)
T ss_pred             CeEEEEECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence            998888753       378999999876      7999999999999999977   888999999999999999999764


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .+..   +  +     .++   .   -|+++|+||.++|
T Consensus       177 ~~~~---p--~-----~~g---~---Divv~S~sK~l~G  199 (377)
T PRK07671        177 YWQS---P--I-----SLG---A---DIVLHSATKYLGG  199 (377)
T ss_pred             ccCC---h--h-----hhC---C---eEEEecCcccccC
Confidence            3321   1  1     111   1   3899999999874

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.69  E-value=6.3e-16  Score=150.32  Aligned_cols=152  Identities=17%  Similarity=0.221  Sum_probs=117.1

Q ss_pred             CCCCCCcCc---HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HH
Q 018147          161 GAYSHSQGI---KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IA  233 (360)
Q Consensus       161 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~  233 (360)
                      ..|+. .|.   ..|++.+|++.    |    .+++++++|+++|+..++.++++ +||+|++++|.|+.....    ++
T Consensus        42 ~~Y~r-~gnPt~~~lE~~lA~l~----g----~~~~~~~~sG~~Ai~~al~all~-~GD~Vl~~~~~y~~t~~~~~~~~~  111 (377)
T TIGR01324        42 LTYGR-RGTLTHFALQDAMCELE----G----GAGCYLYPSGLAAVTNSILAFVK-AGDHVLMVDSAYEPTRYFCDIVLK  111 (377)
T ss_pred             CcccC-CCCccHHHHHHHHHHHh----C----CCcEEEECcHHHHHHHHHHHhcC-CCCEEEEcCCCcHHHHHHHHHHHH
Confidence            34553 344   58888888876    2    46899999999999999999984 999999999999876543    35


Q ss_pred             HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      ..|+++..++..       +.+.+++++++      ++|+|++++|+||+|.+.+   +++|+++|+++|+++|+|++|.
T Consensus       112 ~~gi~v~~~d~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324       112 RMGVDITYYDPL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             hcCcEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCc
Confidence            578887766422       23778888776      7999999999999987755   9999999999999999999998


Q ss_pred             CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       314 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .-....     ++     .++   .|   |+++|++|.++|
T Consensus       176 ~g~~~~-----pl-----~~g---aD---ivv~S~tK~l~G  200 (377)
T TIGR01324       176 AGLLFK-----PL-----EHG---VD---ISIQAGTKYLVG  200 (377)
T ss_pred             cccccC-----cc-----ccC---ce---EEEecCceeccC
Confidence            643321     11     111   23   889999999875

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.68  E-value=5.8e-16  Score=152.11  Aligned_cols=158  Identities=15%  Similarity=0.204  Sum_probs=123.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCC--CC----CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc-
Q 018147          139 LFSADSIERAWQILDQIPGRATG--AY----SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~--~Y----~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~-  211 (360)
                      ..|+.+++++.+.+..... ...  .+    .....+.++|+.+++++      ++++++|++|+|+++++..++..+. 
T Consensus        14 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~   86 (402)
T TIGR02006        14 PVDPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELI------GADSREIVFTSGATESNNLAIKGIAH   86 (402)
T ss_pred             CCCHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            4688899988777754321 111  11    11123556677777776      4578899999999999999887763 


Q ss_pred             --cCCCCEEEEcCCCchHHHHHH---HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          212 --RSENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       212 --~~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                        ..+||.|+++.+.|+.+...+   +..|.+++.++++++  +.+|++.+++++++      +++++++++++||||.+
T Consensus        87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~  158 (402)
T TIGR02006        87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSN--GLIDLEELKAAIRD------DTILVSIMHVNNEIGVI  158 (402)
T ss_pred             hhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhcCC------CCEEEEEECCCcCceec
Confidence              148999999999999765543   456999999988754  47899999998875      68899999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .+   +++|.++|+++|+++++|+++..
T Consensus       159 ~~---~~~I~~l~~~~g~~livD~a~a~  183 (402)
T TIGR02006       159 QD---IAAIGEICRERKVFFHVDAAQSV  183 (402)
T ss_pred             cc---HHHHHHHHHHcCCEEEEEcchhc
Confidence            98   88999999999999999999865

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.68  E-value=7.5e-16  Score=150.67  Aligned_cols=144  Identities=20%  Similarity=0.256  Sum_probs=110.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~  244 (360)
                      ...|++.+|++.    |  .+ +.+++++| +.++..++. ++ .+||+|+++.|.|+.    +...++..|++++.+++
T Consensus        56 ~~~le~~lA~l~----g--~~-~~v~~~sG-~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~  125 (390)
T PRK08064         56 REALEDIIAELE----G--GT-KGFAFASG-MAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM  125 (390)
T ss_pred             HHHHHHHHHHHh----C--CC-CeEEECCH-HHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence            567888888876    3  23 45666555 678888886 55 499999999998873    23456678999999875


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      .       |++++++++++      ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......     
T Consensus       126 ~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~-----  184 (390)
T PRK08064        126 T-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK-----  184 (390)
T ss_pred             C-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC-----
Confidence            3       68889888876      7999999999999999987   8889999999999999999998743221     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     .++      ..++++|++|.++|
T Consensus       185 ~~-----~~g------~Divv~S~tK~~~G  203 (390)
T PRK08064        185 PL-----DLG------ADVVLHSATKFLAG  203 (390)
T ss_pred             ch-----hhC------CcEEEeecceeccC
Confidence            11     111      13789999998863

>PLN02509 cystathionine beta-lyase

Probab=99.68  E-value=1.3e-15  Score=151.12  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=118.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~  235 (360)
                      ...|... |.+ .++++++++.+..|    .+++++++|+++++..++. ++ ++||+|+++.|.|+.+..    .+...
T Consensus       124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il~-ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~  195 (464)
T PLN02509        124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_pred             CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHHH-Hh-CCCCEEEEcCCchhhHHHHHHHHHHHC
Confidence            3567765 665 67888888877654    4567777888899977664 56 599999999999998763    34567


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.       .|++++++++++      ++|+|++++|+||||.+.   ++++|+++|+++|+++|+|++|...
T Consensus       196 G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~  259 (464)
T PLN02509        196 GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQIS---DIRKIAEMAHAQGALVLVDNSIMSP  259 (464)
T ss_pred             CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCHH---HHHHHHHHHHHcCCEEEEECCcccc
Confidence            998887753       368889988866      799999999999999874   5999999999999999999998764


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .....        .  ..+   .|   ++++|++|.++|
T Consensus       260 ~~~~p--------l--~~g---aD---ivv~S~tK~l~G  282 (464)
T PLN02509        260 VLSRP--------L--ELG---AD---IVMHSATKFIAG  282 (464)
T ss_pred             ccCCh--------h--hcC---Cc---EEEecCcccccC
Confidence            33211        1  111   23   889999998865

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.68  E-value=1.1e-15  Score=150.88  Aligned_cols=193  Identities=13%  Similarity=0.025  Sum_probs=123.4

Q ss_pred             CCCHHHHHHHHHHHHcCCC--CCCCCCC-CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          139 LFSADSIERAWQILDQIPG--RATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~--~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      .+|+.+++++...+.....  .....|. ...-...+.+...+.+++.+|.  +..+|++++| ++++..++.+++ ++|
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~al~~~l~~l~-~~g  111 (416)
T PRK00011         36 FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQANAAVYFALL-KPG  111 (416)
T ss_pred             cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHHHHHHHHHhc-CCC
Confidence            3588898887665432210  0011111 1111222322233345554553  4455766665 679999999998 499


Q ss_pred             CEEEEcCCCchHHHH-----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          216 DGILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      |+|+++.|+|..+..     .+...|++++.++++.+ ++.+|++++++++++.     ++++|++++++|+  ...+  
T Consensus       112 d~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~k~v~~~~~~~~--~~~~--  181 (416)
T PRK00011        112 DTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEE-TGLIDYDEVEKLALEH-----KPKLIIAGASAYS--RPID--  181 (416)
T ss_pred             CEEEEeccccCCccccccccccccceeeEeecCcCcc-cCCcCHHHHHHHHHhc-----CCCEEEECCCcCC--CccC--
Confidence            999999999976432     12334678888887643 4689999999999753     6888888766654  4445  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +++|+++|+++|+++|+|++|. ++.+.+. ....+.         ..|   +++.|+||++ +|.|.||
T Consensus       182 -~~~I~~la~~~~~~livD~a~~~g~~~~g~-~~~~~~---------~~d---i~~~S~~K~l-~g~~gg~  237 (416)
T PRK00011        182 -FKRFREIADEVGAYLMVDMAHIAGLVAAGV-HPSPVP---------HAD---VVTTTTHKTL-RGPRGGL  237 (416)
T ss_pred             -HHHHHHHHHHcCCEEEEECcchhcccccCc-cCCCCC---------CCc---EEEecCCcCC-CCCCceE
Confidence             8999999999999999999975 3333221 011110         022   7799999988 5677776

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.67  E-value=1.6e-15  Score=146.82  Aligned_cols=154  Identities=12%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      ...|+.+. ..+|++++|++.        ..+++++++|+++|+.+++. ++ ++||+|+++.+.|..-...+.......
T Consensus        48 Y~R~~~p~-~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~~~~~  116 (364)
T PRK07269         48 YTRTKNPT-RAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQEKEG  116 (364)
T ss_pred             eeCCCCcc-HHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHHHhcC
Confidence            44555554 789999999987        36789999999999999985 55 599999999999875444333221000


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                       .+..    .|..|++++++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+..
T Consensus       117 -~~~~----~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~~  182 (364)
T PRK07269        117 -RFHF----TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQR  182 (364)
T ss_pred             -cEEE----EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence             0111    245689999999976      7999999999999999886   9999999999999999999976533221


Q ss_pred             CCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       320 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                           ++     ..+   .|   |+++|++|.++|
T Consensus       183 -----pl-----~~g---aD---ivv~S~tK~l~g  201 (364)
T PRK07269        183 -----PI-----ELG---AD---IVLHSATKYLSG  201 (364)
T ss_pred             -----ch-----hhC---Cc---EEEecCceeccC
Confidence                 11     111   23   899999998874

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.66  E-value=1.8e-15  Score=149.67  Aligned_cols=206  Identities=14%  Similarity=0.051  Sum_probs=139.4

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--++.+++++.+.+.+..    ..+.+..+..+|++++++++..       .++|++++|+++
T Consensus        47 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~~~~~~~~lae~l~~~~~~-------~~~v~~~~sGse  115 (423)
T TIGR00713        47 GNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT----SYGAPTEAEILLAKEIISRVPS-------VEMVRFVNSGTE  115 (423)
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----cCCCCCHHHHHHHHHHHHhCCc-------ccEEEEeCCHHH
Confidence            4456666554     22457899999999887632    2223455788999999887621       368999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc---CCeEEEeecCCC-------CCc---CCCHHHHHHHHHHHHhc
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH---GGTLVPYYLDEA-------TGW---GLETSEVKKQLEAAKAK  267 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~-------~~~---~~d~~~L~~~i~~~~~~  267 (360)
                      |+..+++.... ...++|+...+.|..+...+...   +......+..+.       ..+   ..|+++|++.++..   
T Consensus       116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---  192 (423)
T TIGR00713       116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY---  192 (423)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc---
Confidence            99998886431 24689999999999876543321   111111111100       000   02789999988632   


Q ss_pred             CCCccEEEEe-cCCCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVI-NPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~-~P~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                      +.++++|++. .|+| +|.+.+ ++.+++|.++|++||+++|+||+|.++.++..  +. . .. .+   ..||     +
T Consensus       193 ~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~--~~-~-~~-~~---~~pD-----i  258 (423)
T TIGR00713       193 GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG--GA-Q-EY-FG---VEPD-----L  258 (423)
T ss_pred             CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc--hh-H-HH-hC---CCcc-----h
Confidence            1267888886 8888 798888 58899999999999999999999999855321  11 1 11 11   1255     2


Q ss_pred             eccCcCccccccccC
Q 018147          346 QSVSKGRYFHFFSKW  360 (360)
Q Consensus       346 ~S~SK~~~g~~RvGw  360 (360)
                      -+|||++++|+|+||
T Consensus       259 ~t~sK~l~~G~pig~  273 (423)
T TIGR00713       259 TTLGKIIGGGLPVGA  273 (423)
T ss_pred             hhhhhhhcCCCceee
Confidence            379999999999998

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.66  E-value=5.8e-15  Score=145.00  Aligned_cols=198  Identities=12%  Similarity=0.068  Sum_probs=133.3

Q ss_pred             CCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATG----AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      .++++++++   +...+|++++++.+.++..+. +..    .|....-..+|++.+|+++    |   .++ .+++++++
T Consensus        45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~g~~~~~~~Le~~la~~~----g---~~~-~l~~~sG~  115 (402)
T TIGR01821        45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGA-GAGGTRNISGTNIPHVELEAELADLH----G---KES-ALVFTSGY  115 (402)
T ss_pred             eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCC-CCcchhhhhCCcHHHHHHHHHHHHHh----C---CCe-EEEECchH
Confidence            457788777   667789999999998887532 111    1222223456677776665    3   133 44445457


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      +++..++..+.. .+++.|+.....|......+...|+++..++.       .|++++++.++..  ...++++|++++|
T Consensus       116 ~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~--~~~~~~~v~~e~~  186 (402)
T TIGR01821       116 VANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSV--DPNRPKIIAFESV  186 (402)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhc--cCCCCeEEEEcCC
Confidence            888888887752 26777777666777777777888887765532       2678888877632  1125789999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +||||.+.+   +++|.++|+++|+++|+||+|...+++..  ...+... .++.   ++ ..|+++||||+|+
T Consensus       187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~--g~g~~~~-~~~~---~~-~div~~t~sKa~g  250 (402)
T TIGR01821       187 YSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR--GGGIAER-DGLM---HR-IDIIEGTLAKAFG  250 (402)
T ss_pred             CCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC--CCccchh-ccCC---CC-CeEEEEechhhhc
Confidence            999999998   89999999999999999999985545432  1111111 1111   12 2478899999987

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.66  E-value=2.8e-15  Score=145.17  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=120.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~--~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~  244 (360)
                      ..++|+.+++++    |  +++  ++|++|+|+++++..++.++.. +||.|++..+.+.+.  ...++..|.+++.+++
T Consensus        37 ~~~~r~~la~l~----~--~~~~~~~i~~t~~~t~al~~~~~~l~~-~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~  109 (363)
T TIGR02326        37 VEQIRQQLLALA----T--AEEGYTSVLLQGSGTFAVEAVIGSAVP-KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDT  109 (363)
T ss_pred             HHHHHHHHHHHh----C--CCCCceEEEEcCCCHHHHHHHHHhcCC-CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence            344556666655    4  344  4799999999999999999985 888877766655443  4667889999999998


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +++  +.+|++++++++++.    ++++++.+++++||||..++   +++|+++|+++|+++|+|+++.   ++..  ..
T Consensus       110 ~~~--~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~--~~  175 (363)
T TIGR02326       110 GEV--EPPDVVEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGI--PI  175 (363)
T ss_pred             CCC--CCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCc--cc
Confidence            754  478999999998752    24677888999999999998   8899999999999999998764   3322  22


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++.+.    +   .|   +++.|++|.++|...+||
T Consensus       176 ~~~~~----~---~D---~~~~s~~K~l~~p~G~G~  201 (363)
T TIGR02326       176 DIAEL----H---ID---YLISSANKCIQGVPGFGF  201 (363)
T ss_pred             chhhc----C---cc---EEEecCccccccCCcceE
Confidence            22211    1   23   778999999876655675

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.66  E-value=8.8e-15  Score=143.27  Aligned_cols=191  Identities=15%  Similarity=0.101  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          139 LFSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      ...+++++++.+.+++.+.   .....|+...+..+|++++|+++.      . ++.+++++|.++.+ .++..++ ++|
T Consensus        12 ~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g------~-e~al~~~sG~~a~~-~~i~~l~-~~G   82 (392)
T PLN03227         12 SSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG------T-ESAILYSDGASTTS-STVAAFA-KRG   82 (392)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC------C-CcEEEecCcHHHHH-HHHHHhC-CCC
Confidence            3467889998888876321   112347777788999999999982      1 36788888877777 5566677 499


Q ss_pred             CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh--------cCCCccEEEEecCCCCcccCC
Q 018147          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA--------KGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~--------~g~~~k~iil~~P~NPTG~~~  287 (360)
                      |.|+++.+.|..+...+...+++++.++..       |++.+++.++....        ..+++++|++..+.||+|.+.
T Consensus        83 D~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~  155 (392)
T PLN03227         83 DLLVVDRGVNEALLVGVSLSRANVRWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA  155 (392)
T ss_pred             CEEEEeccccHHHHHHHHHcCCeEEEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc
Confidence            999999999999988888888887776543       34444443332211        123577888889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +   +++|.++|+++|+++|+||+|. +...+.. -....... ++... .+ .-|++.|+||+++
T Consensus       156 ~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~-G~g~~~~~-g~~p~-~~-~Div~~slsk~~g  213 (392)
T PLN03227        156 P---LKELVALKEEFHYRLILDESFS-FGTLGKS-GRGSLEHA-GLKPM-VH-AEIVTFSLENAFG  213 (392)
T ss_pred             C---HHHHHHHHHHcCCEEEEECccc-ccccCCC-CCcHHHHc-CCCCC-CC-ceEEEeechhhhh
Confidence            9   8899999999999999999997 3332221 11222211 11100 11 2488889999865

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.66  E-value=1.5e-14  Score=142.27  Aligned_cols=199  Identities=13%  Similarity=0.041  Sum_probs=133.4

Q ss_pred             CCccccCcc---CCCCCHHHHHHHHHHHHcCCCCC---CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          128 PSILDRSET---QGLFSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      .++++++++   ....+|++++++.+.+.......   ...|.+..-..+|++.+|+++    |   .++.+++++|. +
T Consensus        46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g---~~~~~~~~sG~-~  117 (407)
T PRK09064         46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G---KEAALVFTSGY-V  117 (407)
T ss_pred             ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C---CCcEEEECcHH-H
Confidence            567888777   66778999999988887643200   112333334566777777765    4   24556666664 5


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +...++..+.. .+++.|+.....|......++..|.++..++.       .|++++++.++..  ...++++|++++|+
T Consensus       118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~--~~~~~~~v~~~~v~  188 (407)
T PRK09064        118 SNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAA--DPDRPKLIAFESVY  188 (407)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhc--cCCCCeEEEEeCCC
Confidence            65566666542 26776666666777777777778887765543       3678888877631  11267899999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      ||+|.+.+   +++|.++|+++|+++|+||+|....|+..  ...+... .++.   ++ ..|+++||||+|+
T Consensus       189 s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~--g~g~~~~-~~~~---~~-~div~~t~sKa~g  251 (407)
T PRK09064        189 SMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR--GGGIAER-DGLM---DR-IDIIEGTLAKAFG  251 (407)
T ss_pred             CCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC--CCChHHh-cCCC---CC-CeEEEEecchhhh
Confidence            99999998   89999999999999999999985445432  1122221 1111   12 2588999999987

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.66  E-value=2.8e-15  Score=146.10  Aligned_cols=152  Identities=18%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~  235 (360)
                      +..|+.+. ...|++.+|++.    |   .+..+++ ++++.|+..++. ++ .+||+|+++.|.|+...    ..+...
T Consensus        44 y~r~~~p~-~~~Le~~la~l~----g---~~~al~~-~SG~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~  112 (380)
T PRK06176         44 YSRSGNPT-RFALEELIADLE----G---GVKGFAF-ASGLAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVLVKN  112 (380)
T ss_pred             ccCCCChh-HHHHHHHHHHHh----C---CCCEEEE-CCHHHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHHHhc
Confidence            34444444 677788887775    3   1234555 445678887775 55 59999999999997543    345667


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++.       .|++++++++++      ++++|++.+|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       113 gi~v~~vd~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~  176 (380)
T PRK06176        113 GLSCTIIDT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATP  176 (380)
T ss_pred             CeEEEEcCC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCcccc
Confidence            888887753       378999998876      7999999999999999998   889999999999999999999875


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .+...     +     ..+   .|   +++.|++|.++|
T Consensus       177 ~~~~p-----~-----~~g---aD---ivv~S~tK~l~g  199 (380)
T PRK06176        177 YYQNP-----L-----LLG---AD---IVVHSGTKYLGG  199 (380)
T ss_pred             ccCCc-----c-----ccC---CC---EEEecCceeccC
Confidence            43321     1     111   23   889999998864

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.66  E-value=8e-15  Score=142.99  Aligned_cols=152  Identities=18%  Similarity=0.264  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~V  218 (360)
                      +..+.++++.+.+...    .  |....+..+|++++++++.        .++.++++|+++|+..++.++ + .+||+|
T Consensus         8 ~~~~~~~~v~~~~~~~----~--~~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~-~~Gd~V   72 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSD----F--LTQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGV-GPGDRV   72 (380)
T ss_pred             CCHHHHHHHHHHHhcC----C--ccCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCC-CCCCEE
Confidence            3556677777777652    2  3334457899999999982        234566778899999999998 5 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.++|..+...+...|++++.++++++ ++.+|++++++++++.  +.+++++|+++|   ++|...+   +++|.++
T Consensus        73 iv~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~--~~~~t~~v~~~~---~~G~~~~---~~~i~~l  143 (380)
T TIGR03588        73 WTTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAA--KGKLPKAIVPVD---FAGKSVD---MQAIAAL  143 (380)
T ss_pred             EeCCcchHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcc--cCCCceEEEEeC---CCCccCC---HHHHHHH
Confidence            99999999999999999999999999764 4789999999999731  001688888654   6888776   8999999


Q ss_pred             HHHcCCEEEEccCCCCC
Q 018147          299 CKKEGLVLLADEVYQEN  315 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~  315 (360)
                      |+++|++||+|+++...
T Consensus       144 ~~~~~~~lI~D~a~a~g  160 (380)
T TIGR03588       144 AKKHGLKIIEDASHALG  160 (380)
T ss_pred             HHHcCCEEEEECCCccc
Confidence            99999999999999864

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.65  E-value=4.5e-15  Score=146.71  Aligned_cols=145  Identities=17%  Similarity=0.223  Sum_probs=114.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHH----HHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~  244 (360)
                      ...|.+.+|++.    |    .+..++++++++|+..++.+++. +||+|+++.+.|...    ...+...|++++.++.
T Consensus        65 ~~~le~~lA~l~----g----~~~al~~~SG~~Ai~~al~all~-pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         65 NAVLEERVAALE----G----GTAALAVASGHAAQFLVFHTLLQ-PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHhC-CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            466777777775    3    24578888899999999999884 999999999999853    3446778999888764


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      .       |++.+++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......     
T Consensus       136 ~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~-----  194 (427)
T PRK05994        136 D-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIR-----  194 (427)
T ss_pred             C-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccCC-----
Confidence            2       78899998876      7999999999999999998   8899999999999999999997532211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     .++   .|   +++.|++|.++|
T Consensus       195 pl-----~~g---aD---ivv~S~tK~lgg  213 (427)
T PRK05994        195 PI-----EHG---AD---IVVHSLTKFLGG  213 (427)
T ss_pred             cc-----ccC---Cc---EEEEcCccccCC
Confidence            11     111   24   888999998875

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.65  E-value=5e-15  Score=139.07  Aligned_cols=185  Identities=19%  Similarity=0.289  Sum_probs=121.7

Q ss_pred             CCCCC-CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH-HHH-HHHHcc-----------CCCCEEEEcCCC
Q 018147          159 ATGAY-SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMM-MQLLIR-----------SENDGILCPIPQ  224 (360)
Q Consensus       159 ~~~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al-~~~-~~~l~~-----------~~gd~Vlv~~P~  224 (360)
                      ....| +...|++++|+-.|+.+      ++++++|++..+++-.| +.+ ..+++.           .+.-+.++|.|+
T Consensus        60 D~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPG  133 (425)
T PF12897_consen   60 DCRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPG  133 (425)
T ss_dssp             BTTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES-
T ss_pred             cccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCC
Confidence            46789 99999999999999999      68899999987765544 222 222221           123468999999


Q ss_pred             chHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHH-HHHc
Q 018147          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDF-CKKE  302 (360)
Q Consensus       225 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~l-a~~~  302 (360)
                      |..+..+.+.+|.+.++||+.++   ++|+|.+++.+.+    .+.+|.|++. ..+||||.++|.+..++++.+ ....
T Consensus       134 YDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~  206 (425)
T PF12897_consen  134 YDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP  206 (425)
T ss_dssp             -HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST
T ss_pred             chHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc
Confidence            99999999999999999999988   9999999998854    2378888866 559999999999999999998 4457


Q ss_pred             CCEEEEccCCCCCcc-CCCC--CCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          303 GLVLLADEVYQENVY-VPEK--KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~-~~~~--~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      +..|+-|++|.--.+ ++..  ....+...+...+.  || +++.+.|.||.-.+|-.|+
T Consensus       207 DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGn--pd-rv~~F~STSKITf~GaGva  263 (425)
T PF12897_consen  207 DFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGN--PD-RVYVFASTSKITFPGAGVA  263 (425)
T ss_dssp             T-EEEEE-TTTT-BSSSSSS------HHHHHHHTT---TT-SEEEEEESTTTS-TTSS-E
T ss_pred             CeEEEeecCceEeeccccccchhhhHHHHHHHHcCC--CC-eEEEEecccccccCCccee
Confidence            999999999976555 2221  12367777666654  88 8999999999655554444

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.64  E-value=6e-15  Score=143.08  Aligned_cols=157  Identities=14%  Similarity=0.200  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----CCCCE
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SENDG  217 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~~gd~  217 (360)
                      .+.+++.+.+..... ....|+   |...+.+.+.+.+.+..|  ++++++++++|+++++..++.++..     .+||+
T Consensus        35 ~~~~a~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~  108 (373)
T TIGR03812        35 IAVKAYDMFIETNLG-DPGLFP---GTKKIEEEVVGSLGNLLH--LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPN  108 (373)
T ss_pred             HHHHHHHHHhhcCCC-CcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcE
Confidence            345555555444321 122232   334444555555555445  4567889999999999888766541     36799


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.++|..|...++..|++++.+++++  ++.+|++++++++++      ++..+++++|+||||.+.+   +++|.+
T Consensus       109 vl~~~~~h~~~~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~  177 (373)
T TIGR03812       109 IIVPESAHFSFEKAAEMLGLELRYAPLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSK  177 (373)
T ss_pred             EEECCcchHHHHHHHHHcCCeEEEEeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHH
Confidence            99999999999999999999999999864  368999999999976      5655666678999999987   888999


Q ss_pred             HHHHcCCEEEEccCCCCCc
Q 018147          298 FCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~  316 (360)
                      +|+++|+++|+|++|..+.
T Consensus       178 l~~~~~~~livD~a~~~~~  196 (373)
T TIGR03812       178 IALENGIYLHVDAAFGGFV  196 (373)
T ss_pred             HHHHcCCeEEEEcCchhHH
Confidence            9999999999999998653

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.64  E-value=2.1e-14  Score=144.07  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCC---CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH--HHHHccC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAY---SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM--MQLLIRS  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~--~~~l~~~  213 (360)
                      .+|+.+.+.+.+.... .  ..+.|   ...+|..++++++++++.+.+|.+  ...+..++|+.+.+..+  ++.+..+
T Consensus        81 ~~~p~i~~~~~~~~~~-~--~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~~  155 (481)
T PRK04366         81 KYNPKINEKVARLPGF-A--ELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHEA  155 (481)
T ss_pred             CCCHHHHHHHHhCcch-h--cCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhhc
Confidence            5688788777653111 1  36678   457899999999999999998853  34555566766665533  3322224


Q ss_pred             CCC----EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          214 END----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       214 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      +||    +|+++.|.|+.|...++..|++++.++++.  +|.+|+++|++++++      ++++|++++|+ |||.+  .
T Consensus       156 ~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~  224 (481)
T PRK04366        156 RGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--E  224 (481)
T ss_pred             cCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--c
Confidence            776    999999999999999999999999999864  368999999999876      79999999998 99954  4


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      +++++|+++|+++|+++++|.++.
T Consensus       225 ~dl~eI~~~a~~~gal~iVD~a~~  248 (481)
T PRK04366        225 RNILEIAEIVHEAGGLLYYDGANL  248 (481)
T ss_pred             hHHHHHHHHHHHcCCEEEEEecCh
Confidence            579999999999999999999974

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.64  E-value=7.2e-15  Score=145.26  Aligned_cols=145  Identities=19%  Similarity=0.213  Sum_probs=116.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~  244 (360)
                      ..+|++.+|+++    |    .+..++|+++++|+.+++..++. +||+|+++...|......+    ...|++++.++.
T Consensus        66 ~~~le~~lA~l~----g----~~~av~~sSGt~Al~~al~~ll~-~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  136 (433)
T PRK08134         66 VAVLEERVAALE----G----GVGAIATASGQAALHLAIATLMG-AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP  136 (433)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence            677888888776    2    23478899999999999998874 9999999999998654443    457999988875


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +       |++++++++++      ++|+|++.+|+||+|.+.+   +++|+++|+++|+++|+|.++..-....     
T Consensus       137 ~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~-----  195 (433)
T PRK08134        137 G-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLR-----  195 (433)
T ss_pred             C-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            3       68999999987      8999999999999999999   9999999999999999999986532211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     .++   -|   +++.|.+|.++|
T Consensus       196 pl-----~~G---aD---~vv~S~tK~l~g  214 (433)
T PRK08134        196 PF-----EHG---AD---LVYHSATKFLGG  214 (433)
T ss_pred             ch-----hcC---CC---EEEeccccccCC
Confidence            11     111   23   888999998875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=8.7e-15  Score=143.13  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHHHHHcCCC-CCCCCCCCCc----CcHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHc--
Q 018147          140 FSADSIERAWQILDQIPG-RATGAYSHSQ----GIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI--  211 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~-~~~I~~t~Ga~~al~~~~~~l~--  211 (360)
                      .|..+++++.+.+..... .+...|....    -+++.|+.+|+|+      +.+ .++|++|.|+|++|+.+..++.  
T Consensus        34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~------~a~~~~eIvft~~tT~aln~va~~l~~~  107 (405)
T COG0520          34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL------NADSSDEIVFTRGTTEALNLVARGLGRS  107 (405)
T ss_pred             CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEEeCChhHHHHHHHHHhhhh
Confidence            688999998887754322 1223333332    3567788888887      456 4899999999999999999983  


Q ss_pred             cCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSENDGILCPIPQYP----LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ..+||+|++..-.|+    ++....+..|++++.+|++++  ..++.+.++..+++      ++|+|.+++-+|.||.+.
T Consensus       108 ~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~--g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~  179 (405)
T COG0520         108 LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDD--GLLDLDALEKLITP------KTKLVALSHVSNVTGTVN  179 (405)
T ss_pred             hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCC--CCcCHHHHHHhcCC------CceEEEEECccccccccc
Confidence            248999999998887    456666777999999999844  48899999998887      899999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +   +++|+++|+++|+++++|.+.+-
T Consensus       180 p---v~~I~~la~~~ga~v~VDaaq~~  203 (405)
T COG0520         180 P---VKEIAELAHEHGALVLVDAAQAA  203 (405)
T ss_pred             h---HHHHHHHHHHcCCEEEEECcccc
Confidence            9   99999999999999999999765

>PLN02651 cysteine desulfurase

Probab=99.63  E-value=1.4e-14  Score=140.39  Aligned_cols=161  Identities=14%  Similarity=0.238  Sum_probs=119.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCC-CCCCC--CC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          137 QGLFSADSIERAWQILDQIPGR-ATGAY--SH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~-~~~~Y--~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      +..+|+.+++++.+.+...... ....+  ..  ..-..++|+.+++++    |  .++++|++|+|++++++.++..+.
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~t~~~t~a~~~~l~~~~   81 (364)
T PLN02651          8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----G--ADPKEIIFTSGATESNNLAIKGVM   81 (364)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHH
Confidence            3357888999988777542110 00011  11  111345556666655    4  567899999999999888776652


Q ss_pred             ---cCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          212 ---RSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       212 ---~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                         ..+||+|++....|+.+...   ++..|.+++.++++++  +.+|++++++++++      +++++++++++||||.
T Consensus        82 ~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~  153 (364)
T PLN02651         82 HFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSD--GLVDLDELAAAIRP------DTALVSVMAVNNEIGV  153 (364)
T ss_pred             HhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhcCC------CcEEEEEECCCCCcee
Confidence               14899999999888765433   3456899999988643  47899999999976      7899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +.+   +++|.++|+++|+++++|.++..
T Consensus       154 ~~~---l~~I~~~~~~~g~~~~vD~a~~~  179 (364)
T PLN02651        154 IQP---VEEIGELCREKKVLFHTDAAQAV  179 (364)
T ss_pred             ccc---HHHHHHHHHHcCCEEEEEcchhh
Confidence            998   88999999999999999999875

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.62  E-value=5.4e-14  Score=138.35  Aligned_cols=198  Identities=13%  Similarity=0.067  Sum_probs=132.8

Q ss_pred             CCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcC----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      .++++++++   ...-+|++++++.+.++.... +...+....|    ..+|.+.+|+++    |.   +..+++++| +
T Consensus        45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~~~~~~~~~le~~la~~~----g~---~~~~~~~SG-~  115 (406)
T PRK13393         45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGA-GAGGTRNISGTNHYHVLLEAELADLH----GK---EAALLFTSG-Y  115 (406)
T ss_pred             ccEEEeecccccCCCCCHHHHHHHHHHHHHcCC-CCcccccccCChHHHHHHHHHHHHHh----CC---CcEEEeCCc-H
Confidence            457888888   334589999999998887542 1112222223    345555555554    41   344555555 5


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      ++...++..+.. .+||.|++....|......+...|.+++.++.       .|++.+++.++..  +..++++|+++++
T Consensus       116 ~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~--~~~~~~~v~~~~v  186 (406)
T PRK13393        116 VSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDL--DPHRPKLVAFESV  186 (406)
T ss_pred             HHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhc--cCCCCEEEEEcCC
Confidence            688888886653 26787777778888888888888888776653       3677787777532  1125778889999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +|++|.+.+   +++|.++|+++|+++|+||+|....++..  ...+... .++.   ++ ..|+++||||+|+
T Consensus       187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~--G~g~~~~-~~~~---~~-~~i~~~tlsKa~g  250 (406)
T PRK13393        187 YSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPR--GGGIAER-EGLA---DR-LTIIEGTLAKAFG  250 (406)
T ss_pred             CCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchhhh-cCCC---CC-CeEEEEeCchhhc
Confidence            999999999   89999999999999999999985555432  1122111 1111   22 2577899999987

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.62  E-value=1.3e-14  Score=142.27  Aligned_cols=206  Identities=15%  Similarity=0.113  Sum_probs=129.7

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +..+++|+..+     -.--+|.+++++.+.++....  ...+..    ......+++.+.+..+    .+.++++++++
T Consensus        38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~--~~~~~~----~~~~~~l~~~l~~~~~----~~~~~~~~SGs  107 (396)
T PRK04073         38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL--TSRAFH----SDQLGPWYEKVAKLTG----KDMVLPMNTGA  107 (396)
T ss_pred             CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc--cccccC----CHHHHHHHHHHHhcCC----CCeEEEcCChH
Confidence            34556776555     223478999999988876532  111111    2233444555544333    36899999999


Q ss_pred             HHHHHHHHHHcc--------CCC-CEEEEcCCCchHHH-HHHHHcCCeEEE---eecCCC---CCcCCCHHHHHHHHHHH
Q 018147          201 PAVHMMMQLLIR--------SEN-DGILCPIPQYPLYS-ASIALHGGTLVP---YYLDEA---TGWGLETSEVKKQLEAA  264 (360)
Q Consensus       201 ~al~~~~~~l~~--------~~g-d~Vlv~~P~y~~~~-~~~~~~g~~~~~---v~~~~~---~~~~~d~~~L~~~i~~~  264 (360)
                      +|+..+++....        .+| ++|+...-.|.... ..+...+.....   -+...+   -.| .|++++++.+++ 
T Consensus       108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~-  185 (396)
T PRK04073        108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-GDLEALKAAITP-  185 (396)
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-CCHHHHHHhccc-
Confidence            999999887631        023 67888877776543 333333311000   000000   001 278889888865 


Q ss_pred             HhcCCCccEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEE
Q 018147          265 KAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (360)
Q Consensus       265 ~~~g~~~k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i  343 (360)
                           ++++|+++.++||||.+++.+ .+++|.++|+++|+++|+||+|.++.+.+.  ...+     +.....+|    
T Consensus       186 -----~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~~-----~~~~~~pd----  249 (396)
T PRK04073        186 -----NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK--LFAC-----DWDNVTPD----  249 (396)
T ss_pred             -----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH--HHHh-----hhcCCCCC----
Confidence                 688888888899999998865 699999999999999999999999655442  1111     11111245    


Q ss_pred             EEeccCcCcccc-ccccC
Q 018147          344 SFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       344 ~~~S~SK~~~g~-~RvGw  360 (360)
                       +.+|||++++| +|+||
T Consensus       250 -i~~~sK~lg~gg~~ig~  266 (396)
T PRK04073        250 -MYILGKALGGGVFPISC  266 (396)
T ss_pred             -EEEecccccCCCCcceE
Confidence             33579999875 99997

>PRK05968 hypothetical protein; Provisional

Probab=99.62  E-value=1.1e-14  Score=142.39  Aligned_cols=150  Identities=17%  Similarity=0.186  Sum_probs=112.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~  244 (360)
                      ..+|++.+|+++    |    .+..+++++++.|+..++.+++. +||+|+++.+.|..    +...+...|++++.++.
T Consensus        65 ~~~le~~lA~l~----g----~~~av~~~sG~~Ai~~al~al~~-~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (389)
T PRK05968         65 VRAFEEMLAKLE----G----AEDARGFASGMAAISSTVLSFVE-PGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG  135 (389)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence            578888888876    3    12344556667899999888884 99999999999985    34566778999988753


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      .       |++++++++ +      ++|+|++++|+||++   +..++++|+++|+++|+++|+|++|....+...    
T Consensus       136 ~-------d~~~l~~~i-~------~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p----  194 (389)
T PRK05968        136 R-------DEEAVAKAL-P------GAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQRP----  194 (389)
T ss_pred             C-------CHHHHHHhc-c------cCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhccCc----
Confidence            2       788898887 3      689999987776655   556799999999999999999999987543321    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                       +     ..+   -|   +++.|+||.++|  +.+.||
T Consensus       195 -~-----~~g---~D---ivv~S~tK~l~g~~~~~gG~  220 (389)
T PRK05968        195 -I-----TLG---VD---LVIHSASKYLGGHSDTVAGV  220 (389)
T ss_pred             -h-----hcC---Cc---EEEeeccccccCCCCeEEEE
Confidence             1     111   13   788899999985  356664

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.62  E-value=2.8e-14  Score=141.45  Aligned_cols=149  Identities=15%  Similarity=0.209  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--------
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--------  211 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--------  211 (360)
                      ++.+.++++.+.+...    ...+++.  ..+|++++|+++    |    .+++++++|+++++..++.+++        
T Consensus        42 ~~~~~~~a~~~~~~~~----~~~~G~~--~~~fe~~lA~~~----g----~~~~v~~~sGt~al~~aL~al~~~~~~~~~  107 (438)
T PRK15407         42 IDAKELQNLVDASLDF----WLTTGRF--NDAFEKKLAEFL----G----VRYALLVNSGSSANLLAFSALTSPKLGDRA  107 (438)
T ss_pred             CCHHHHHHHHHHHHhC----cccCChh--HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHhhccccccC
Confidence            4555566665555431    3333332  578999999997    2    3479999999999999988762        


Q ss_pred             cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      ..+||+|+++.++|+.+...+...|++++.++++.+ +|.+|++.+++++++      ++++|+++++   +|...   +
T Consensus       108 ~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~-~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---d  174 (438)
T PRK15407        108 LKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELP-TYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---D  174 (438)
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---h
Confidence            158999999999999999999999999999998753 578999999999876      7999999875   34333   4


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCC
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      +++|.++|+++|++||+|++|...
T Consensus       175 l~~I~~la~~~gi~vIeDaa~a~G  198 (438)
T PRK15407        175 LAAVKAFCDKHNLWLIEDNCDALG  198 (438)
T ss_pred             HHHHHHHHHHCCCEEEEECccchh
Confidence            899999999999999999999764

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.62  E-value=2e-14  Score=138.26  Aligned_cols=127  Identities=17%  Similarity=0.288  Sum_probs=109.2

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~  246 (360)
                      ....++++.+++++    |    .+++++++|+++|+..++..+...+||+|+++.++|..+...+...|++++.+++++
T Consensus        18 ~~~~~~~~~la~~~----~----~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (352)
T cd00616          18 PKVREFEKAFAEYL----G----VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP   89 (352)
T ss_pred             HHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCC
Confidence            35789999999987    2    356888889999999999988324999999999999999999999999999999875


Q ss_pred             CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       247 ~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                       ++|.+|++.+++.+++      ++++|+++|   ++|.+.+   +++|.++|+++|+++|+|++|..
T Consensus        90 -~~~~~d~~~l~~~i~~------~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~  144 (352)
T cd00616          90 -DTYNIDPELIEAAITP------RTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQAL  144 (352)
T ss_pred             -CcCCcCHHHHHHhcCc------CCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCC
Confidence             3578999999998865      789888765   6898877   88889999999999999999975

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.62  E-value=1.8e-14  Score=140.27  Aligned_cols=194  Identities=14%  Similarity=0.136  Sum_probs=132.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~  217 (360)
                      .-++.+++++.+.+++...     .. ..+..++++.+++++.+..+    .+.+++++++++|+..+++.....+| +.
T Consensus        45 ~~~p~v~~a~~~~~~~~~~-----~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~  114 (377)
T PRK02936         45 HCHPTVTKAVQEQLDDIWH-----VS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTGKSK  114 (377)
T ss_pred             CCCHHHHHHHHHHHHhccc-----cc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcCCCe
Confidence            3578899999998876421     11 22356889999999977543    25799999999999999986431234 67


Q ss_pred             EEEcCCCchHHHH-HHHHcCCeEE---EeecCCCCCcC--CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC-CCHH
Q 018147          218 ILCPIPQYPLYSA-SIALHGGTLV---PYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEE  290 (360)
Q Consensus       218 Vlv~~P~y~~~~~-~~~~~g~~~~---~v~~~~~~~~~--~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~~  290 (360)
                      |++.++.|+.... .+...+....   ..++.++..+-  .|++.+++.+.+      ++++|++..+++++|.. .+.+
T Consensus       115 vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~  188 (377)
T PRK02936        115 IVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPA  188 (377)
T ss_pred             EEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC------CeEEEEEecccCCCCCccCCHH
Confidence            9999998874432 2222222111   11111110011  178899988865      68888888889998877 5789


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+++|.++|++||+++|+||+|.++.+.+.  +.++...  ++   .+|  +   .+|||++++|+|+||
T Consensus       189 ~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~~~~~~--~~---~~d--i---~t~sK~l~~G~~ig~  246 (377)
T PRK02936        189 FLQEVQTLCKKFGALLIIDEVQTGIGRTGT--LFAYEQF--GL---DPD--I---VTVAKGLGNGIPVGA  246 (377)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHHHhh--CC---CCc--E---EEEcccccCCCccEE
Confidence            999999999999999999999998766553  2222111  11   244  2   379999999999997

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.62  E-value=1.2e-14  Score=142.67  Aligned_cols=199  Identities=12%  Similarity=0.099  Sum_probs=130.1

Q ss_pred             CCCccccCcc--CCCC---CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET--QGLF---SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~--~~~~---p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +.+++|+..+  ...+   ++.+.+++.+.++....  ...+....-..+|.+.++++    .|    .+.+++++++++
T Consensus        40 g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~----~~----~~~~~~~~SGs~  109 (401)
T PRK00854         40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTL--TSRAFRNDQLAPLYEELAAL----TG----SHKVLPMNSGAE  109 (401)
T ss_pred             CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhh----CC----CCEEEEeCCcHH
Confidence            4456666555  2233   88899999988887532  11111222234455555544    33    358999999999


Q ss_pred             HHHHHHHHHcc--------CCC-CEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCCCHHHHHH
Q 018147          202 AVHMMMQLLIR--------SEN-DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       202 al~~~~~~l~~--------~~g-d~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      |+..+++.+..        .+| ++|++..-.|......+...+..             +..++       -.|++.|++
T Consensus       110 A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~  182 (401)
T PRK00854        110 AVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEA  182 (401)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHH
Confidence            99999998842        123 67888887776654333332221             11111       137899999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      ++.+      ++++|++++|+||+|.+++.+ .+++|.++|++||+++|+||+|.++.+.+.  ...  ....++   .+
T Consensus       183 ~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~--~~~--~~~~g~---~~  249 (401)
T PRK00854        183 AITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK--LLA--EEHEGI---EA  249 (401)
T ss_pred             HhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch--HhH--HhhcCC---CC
Confidence            8865      789999999999999999854 699999999999999999999998655442  111  101111   24


Q ss_pred             CceEEEEeccCcCcccc-ccccC
Q 018147          339 DISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      |  +++   +||++++| +|+||
T Consensus       250 D--~~~---~~K~l~gg~~~ig~  267 (401)
T PRK00854        250 D--VTL---IGKALSGGFYPVSA  267 (401)
T ss_pred             C--EEE---ecccccCCccCeEE
Confidence            5  232   37998887 68886

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.61  E-value=1.9e-14  Score=141.47  Aligned_cols=198  Identities=14%  Similarity=0.129  Sum_probs=128.3

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +.+++|+..+     -..-+|++++++.+.+.....  .   .... ..+....+++.+.+..+    .+.+++++++++
T Consensus        39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~---~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~sGse  108 (403)
T PRK05093         39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--I---SNVF-TNEPALRLAKKLIDATF----AERVFFANSGAE  108 (403)
T ss_pred             CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCc--c---cCcc-CCHHHHHHHHHHHhhCC----CCEEEEeCchHH
Confidence            3445665443     223588899998888876321  1   1111 11223455555555432    368999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHH-HHHHcCC------------eEEEeecCCCCCcCCCHHHHHHHH
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSA-SIALHGG------------TLVPYYLDEATGWGLETSEVKKQL  261 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~-~~~~~g~------------~~~~v~~~~~~~~~~d~~~L~~~i  261 (360)
                      |+..+++....       ...+.|+..+-.|.+... .+...|.            .++.++       -.|++++++.+
T Consensus       109 A~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l  181 (403)
T PRK05093        109 ANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVP-------FNDLAAVKAVI  181 (403)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeC-------CCCHHHHHHHh
Confidence            99999986521       023567777777766433 2222111            111111       11788998888


Q ss_pred             HHHHhcCCCccEEEEecCCCCcccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCC
Q 018147          262 EAAKAKGITVRALVVINPGNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P~NPTG~~~--~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      .+      ++++|+++ |.||+|.++  +.+.+++|.++|++||+++|+||+|.++.+.+.  ..++...  ++   .+|
T Consensus       182 ~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~~--~~---~pd  247 (403)
T PRK05093        182 DD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD--LFAYMHY--GV---TPD  247 (403)
T ss_pred             cC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhhhc--CC---CCC
Confidence            64      67777666 999998876  889999999999999999999999999877653  2221111  11   144


Q ss_pred             ceEEEEeccCcCccccccccC
Q 018147          340 ISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g~~RvGw  360 (360)
                           +.||||++++|+|+||
T Consensus       248 -----i~s~sK~l~~G~rig~  263 (403)
T PRK05093        248 -----ILTSAKALGGGFPIGA  263 (403)
T ss_pred             -----EEEecccccCCcceEE
Confidence                 4689999999999998

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.60  E-value=2.2e-14  Score=137.20  Aligned_cols=159  Identities=18%  Similarity=0.310  Sum_probs=131.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC--CC-CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          139 LFSADSIERAWQILDQIPGR--AT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~--~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      ..++.|++++.+.+......  .. ..+....+.++.|+.+|+++      +.++.+|++|+|+|++++++++.+.+..+
T Consensus        54 p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFts~ATEs~Nlvl~~v~~~~~  127 (428)
T KOG1549|consen   54 PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFTSGATESNNLVLKGVARFFG  127 (428)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh------CCCCCcEEEeCCchHHHHHHHHHhhcccc
Confidence            35888999988877654221  11 33334556889999999999      56888899999999999999999876567


Q ss_pred             C----EEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          216 D----GILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       216 d----~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      |    .|++..-.|+.....   ++..|..++.+|+..+  ...|.+.+++.|++      +|+++.|.+.+|-+|+++|
T Consensus       128 ~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~--~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P  199 (428)
T KOG1549|consen  128 DKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDS--GLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP  199 (428)
T ss_pred             ccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCcc--ccccHHHHHHhcCC------CceEEEEEecccCcccccc
Confidence            7    899999888876554   4445999999999844  47899999999998      8999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                         +++|+++|+++|+.+++|.+++-
T Consensus       200 ---v~EI~~icr~~~v~v~~DaAQav  222 (428)
T KOG1549|consen  200 ---VKEIVKICREEGVQVHVDAAQAV  222 (428)
T ss_pred             ---HHHHHHHhCcCCcEEEeehhhhc
Confidence               99999999999999999999875

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.59  E-value=3.9e-14  Score=139.38  Aligned_cols=191  Identities=14%  Similarity=0.110  Sum_probs=126.8

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-------C
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S  213 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-------~  213 (360)
                      +|.+++++.+.+..... ....|.     .+...++++.+.+..+    .+.+++++++++|+..+++....       .
T Consensus        57 ~p~v~~A~~~~~~~~~~-~~~~~~-----~~~~~~la~~l~~~~~----~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~  126 (406)
T PRK12381         57 HPALREALNEQASKFWH-TGNGYT-----NEPVLRLAKKLIDATF----ADRVFFCNSGAEANEAALKLARKYAHDRYGS  126 (406)
T ss_pred             CHHHHHHHHHHHhhccc-ccCccC-----CHHHHHHHHHHHhhCC----CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCC
Confidence            78899999988876422 111222     2223445555544322    46999999999999999987531       1


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEE----eecCCC--CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVP----YYLDEA--TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~--~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ....|+.....|.+........+.....    .++.++  .-...|++.+++.+++      ++++|++ +|.|++|.++
T Consensus       127 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~aavii-EPv~~~gg~~  199 (406)
T PRK12381        127 HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD------QTCAVIV-EPIQGEGGVI  199 (406)
T ss_pred             CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC------CeeEEEE-eCCcCCCCCc
Confidence            3567999999998776544433322110    011110  0012478899888864      6766666 7999999876


Q ss_pred             --CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 --AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 --~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +.+.+++|.++|++||+++|+||+|.++.+.+.  ...+..  .++   .+|     +.+|||++++|+|+||
T Consensus       200 ~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~--~~~~~~--~~v---~pD-----i~t~sK~l~gG~~ig~  262 (406)
T PRK12381        200 PADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYMH--YGV---TPD-----VLTTAKALGGGFPIGA  262 (406)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc--hhhhHh--hCC---CCC-----EEEehhhhhCCCceEE
Confidence              689999999999999999999999998766553  222111  111   245     3599999999999997

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.58  E-value=2.2e-13  Score=132.50  Aligned_cols=193  Identities=16%  Similarity=0.101  Sum_probs=124.1

Q ss_pred             CCCHHHHHHHHHHHHcCC------CCCCCCCC----CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 018147          139 LFSADSIERAWQILDQIP------GRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ  208 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~------~~~~~~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~  208 (360)
                      ..++.+.+++.+.+....      ..+..+..    ...-+.++++.+|+++    |  . ++.+++++|....+ .++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~----~--~-~~~l~~~sG~~a~~-~~~~   89 (370)
T PRK05937         18 SRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH----G--A-PEAFIVPSGYMANL-GLCA   89 (370)
T ss_pred             CCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh----C--C-CeEEEECChHHHHH-HHHH
Confidence            445667777766665531      11222333    2223566777777776    3  2 34477777775544 4555


Q ss_pred             HHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      .+. ++||.|++..-.|......++......+.++       ..|+++|++.+++..+.++++.+|++++++|+||.+.+
T Consensus        90 ~~~-~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p  161 (370)
T PRK05937         90 HLS-SVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP  161 (370)
T ss_pred             HhC-CCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC
Confidence            555 4788888878788777777776654444442       35899999999764322224556777899999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                         +++|.++|+++|+++++||+|....++..  ...+.   ..++  +++. .+.+.||||.+++ |.++
T Consensus       162 ---l~eI~~l~~~~~~~livDea~~~G~~g~~--g~g~~---~~~~--~~~~-~~~~~tlsK~~g~~G~~v  221 (370)
T PRK05937        162 ---LEQIIALSKKYHAHLIVDEAHAMGIFGDD--GKGFC---HSLG--YENF-YAVLVTYSKALGSMGAAL  221 (370)
T ss_pred             ---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchH---HhhC--CCCC-cEEEEechhhhhcCceEE
Confidence               88999999999999999999987544432  11111   1111  2332 3678999999976 6554

>PRK07505 hypothetical protein; Provisional

Probab=99.57  E-value=1.9e-13  Score=134.35  Aligned_cols=198  Identities=14%  Similarity=0.066  Sum_probs=120.1

Q ss_pred             CCCccccCcc-CC--CCCHHHHHHHHHHHHcCC-CCCCCCC--CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          127 HPSILDRSET-QG--LFSADSIERAWQILDQIP-GRATGAY--SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       127 ~p~~l~~~~~-~~--~~p~~v~~~~~~~l~~~~-~~~~~~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +..++|+..+ ..  .-+|++++++.+.+...+ .......  .......++++.+++++    |  .  +.+++++| +
T Consensus        45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~--~~~~~~sG-~  115 (402)
T PRK07505         45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF----G--A--SVLTFTSC-S  115 (402)
T ss_pred             CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh----C--C--CEEEECCh-H
Confidence            4456777554 22  458999999999887632 1000000  01122344555555443    4  2  45556655 5


Q ss_pred             HHHHHHHHHHcc---CCCC-EEEEcCCCchH-HH--HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccE
Q 018147          201 PAVHMMMQLLIR---SEND-GILCPIPQYPL-YS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA  273 (360)
Q Consensus       201 ~al~~~~~~l~~---~~gd-~Vlv~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~  273 (360)
                      +|...++..+..   .+|+ .|++.+..|.+ +.  ......+.+++.+|.       .|++.+++++++      ++++
T Consensus       116 ~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~------~~~~  182 (402)
T PRK07505        116 AAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT------NKTV  182 (402)
T ss_pred             HHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc------CCCE
Confidence            666666654321   1232 36666655533 21  112223566676654       378999988865      5789


Q ss_pred             EEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       274 iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +++++|+||||.+++   +++|.++|+++|+++|+||+|....|+........    ..++...++ ++|+++||||+|+
T Consensus       183 ~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~----~~~~~~~~d-~~i~~~s~sK~~~  254 (402)
T PRK07505        183 AYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVR----SELDYRLNE-RTIIAASLGKAFG  254 (402)
T ss_pred             EEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHH----HHcCCCCCC-CeEEEEechhhhh
Confidence            999999999999999   78888999999999999999966555432111111    112110244 5899999999987


Q ss_pred             c
Q 018147          354 F  354 (360)
Q Consensus       354 g  354 (360)
                      +
T Consensus       255 ~  255 (402)
T PRK07505        255 A  255 (402)
T ss_pred             c
Confidence            6

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.56  E-value=9.3e-14  Score=137.32  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=110.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~  244 (360)
                      ...|.+.+|++.    |    .+..+++++++.|+..++.+++. +||+|+++...|.....    .+...|++++.++ 
T Consensus        71 ~~~Le~~lA~l~----g----~~~av~~sSG~aAi~~al~all~-~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  140 (436)
T PRK07812         71 QDVVEQRIAALE----G----GVAALLLASGQAAETFAILNLAG-AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-  140 (436)
T ss_pred             HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhC-CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence            456777777665    3    34567777889999999999985 99999999988876543    3444687777774 


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +.     .|++++++++++      ++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|+++..-....     
T Consensus       141 d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~~-----  201 (436)
T PRK07812        141 DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLIR-----  201 (436)
T ss_pred             CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            21     278999988876      7999999999999999999   8999999999999999999876522211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     .++   .|   +++.|++|.++|
T Consensus       202 pl-----~~G---aD---ivv~S~tK~lgg  220 (436)
T PRK07812        202 PL-----EHG---AD---IVVHSATKYLGG  220 (436)
T ss_pred             ch-----hcC---CC---EEEEecccccCC
Confidence            11     111   23   677999998875

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.54  E-value=2.3e-13  Score=131.96  Aligned_cols=149  Identities=16%  Similarity=0.266  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      .+.++++.+.+++..   ...+  ..-..+|.+++++++        ..++++.+++++.||.+++.++--++||+|++|
T Consensus         5 ~e~~~~v~~~l~s~~---~~~~--g~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p   71 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGW---LSTY--GPYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVP   71 (363)
T ss_dssp             HHHHHHHHHHHHHTC---CSSS--SHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEE
T ss_pred             HHHHHHHHHHHHhCC---ccCC--CHHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecC
Confidence            345566667776642   2222  233688999999988        367899999999999999999854699999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      .-+|+....++...|++++.++++++ ++.+|++.+++++++      ++|+|++.|..   |...   ++++|.++|++
T Consensus        72 ~~t~~~~~~ai~~~G~~pv~~Di~~~-~~~id~~~~~~~i~~------~t~ai~~~h~~---G~~~---d~~~i~~~~~~  138 (363)
T PF01041_consen   72 AYTFPATASAILWAGAEPVFVDIDPE-TLNIDPEALEKAITP------KTKAILVVHLF---GNPA---DMDAIRAIARK  138 (363)
T ss_dssp             SSS-THHHHHHHHTT-EEEEE-BETT-TSSB-HHHHHHHHHT------TEEEEEEE-GG---GB------HHHHHHHHHH
T ss_pred             CCcchHHHHHHHHhccEEEEEeccCC-cCCcCHHHHHHHhcc------CccEEEEecCC---CCcc---cHHHHHHHHHH
Confidence            99999999999999999999999965 589999999999998      89999988762   3333   49999999999


Q ss_pred             cCCEEEEccCCCCCc
Q 018147          302 EGLVLLADEVYQENV  316 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~  316 (360)
                      +|++||+|.++....
T Consensus       139 ~~i~lIeD~a~a~g~  153 (363)
T PF01041_consen  139 HGIPLIEDAAQAFGA  153 (363)
T ss_dssp             TT-EEEEE-TTTTT-
T ss_pred             cCCcEEEccccccCc
Confidence            999999999998743

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.54  E-value=1e-13  Score=132.01  Aligned_cols=160  Identities=16%  Similarity=0.275  Sum_probs=131.6

Q ss_pred             CCCCHHHHHHHHHHHHcCC--CCCCCCCCC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--c
Q 018147          138 GLFSADSIERAWQILDQIP--GRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--I  211 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~--~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l--~  211 (360)
                      ..+.+++++++...+....  ....+.|+-  ...+++.|+.||+.+      ++++++|++|+|+||+.++++...  .
T Consensus        11 Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a   84 (386)
T COG1104          11 TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALA   84 (386)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCCcHHHHHHHHhhHHh
Confidence            3557889999888877651  113444542  334677788888887      578899999999999999999873  2


Q ss_pred             c---CCCCEEEEcCCCchHHHHHHHHc---CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          212 R---SENDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       212 ~---~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      .   ..|..|+++.-.++...+.++.+   |.++.+++++.++  .+|+++|+++|++      ++.+|.|...||-||.
T Consensus        85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~  156 (386)
T COG1104          85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGT  156 (386)
T ss_pred             hhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeee
Confidence            1   24789999999999888877776   9999999999864  7899999999987      7889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +.|   +++|.++|+++++++++|.+..-
T Consensus       157 IQp---I~ei~~i~k~~~i~fHvDAvQa~  182 (386)
T COG1104         157 IQP---IAEIGEICKERGILFHVDAVQAV  182 (386)
T ss_pred             ccc---HHHHHHHHHHcCCeEEEehhhhc
Confidence            999   99999999999999999988754

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=2e-13  Score=130.81  Aligned_cols=146  Identities=14%  Similarity=0.243  Sum_probs=122.5

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      -.+.++++.+.+++.    +...++.  ..+|.+++++|+        .....+.++++|.|+.+++++|.-+|||+|++
T Consensus        14 ~~~e~~~v~~vl~sg----~i~~G~~--v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~   79 (374)
T COG0399          14 GEEELAAVQEVLKSG----WLTGGPF--VRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIV   79 (374)
T ss_pred             chHHHHHHHHHHHcC----CeecChH--HHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEe
Confidence            455666777777763    3334332  688999999997        46788999999999999999664469999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la  299 (360)
                      +.-+|....+.+...|+++++++++++ +|.+|++.+|++|++      ++|+|+..|- .+|.    +   +++|.++|
T Consensus        80 ps~TfvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~------~tKAIipVhl~G~~~----d---m~~i~~la  145 (374)
T COG0399          80 PSFTFVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITP------RTKAIIPVHLAGQPC----D---MDAIMALA  145 (374)
T ss_pred             cCCchHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHccc------CCeEEEEehhccCCC----C---HHHHHHHH
Confidence            999999999999999999999999976 689999999999998      7999998865 4543    4   99999999


Q ss_pred             HHcCCEEEEccCCCC
Q 018147          300 KKEGLVLLADEVYQE  314 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~  314 (360)
                      ++||++||+|.+++.
T Consensus       146 ~~~~l~vIEDaAqa~  160 (374)
T COG0399         146 KRHGLPVIEDAAQAH  160 (374)
T ss_pred             HHcCCeEEEEcchhc
Confidence            999999999999765

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.53  E-value=2.3e-13  Score=133.44  Aligned_cols=206  Identities=11%  Similarity=0.041  Sum_probs=127.5

Q ss_pred             CCccccCcc--C---CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET--Q---GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~--~---~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      .+++|+..+  .   .--+|++++++.+.++....  ....-.    ....+.+++.+.+..|    .+.+++++++++|
T Consensus        31 ~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~--~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A  100 (400)
T PTZ00125         31 KKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL--TSRAFY----NDVLGLAEKYITDLFG----YDKVLPMNSGAEA  100 (400)
T ss_pred             CEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccc--cccccc----CHHHHHHHHHHHhCCC----CCEEEEeCCcHHH
Confidence            345565544  1   12488899999888776432  111101    1233444555544333    3678899999999


Q ss_pred             HHHHHHHHcc---------CCCCEEEEcCCCchHHHHH-HHHcCCeEEE---eecCCCC-C-cCCCHHHHHHHHHHHHhc
Q 018147          203 VHMMMQLLIR---------SENDGILCPIPQYPLYSAS-IALHGGTLVP---YYLDEAT-G-WGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       203 l~~~~~~l~~---------~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~---v~~~~~~-~-~~~d~~~L~~~i~~~~~~  267 (360)
                      ...+++.+..         ..++.|++.+-.|...... +...+.....   .+...+- . ...|+++|++.++.    
T Consensus       101 ~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----  176 (400)
T PTZ00125        101 GETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD----  176 (400)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC----
Confidence            9999987641         0347788888777654433 3322221110   0110000 0 01379999998852    


Q ss_pred             CCCccEEEEecCCCCcccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEe
Q 018147          268 GITVRALVVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (360)
Q Consensus       268 g~~~k~iil~~P~NPTG~~~~~-~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~  346 (360)
                       .++++|++..++||||.+++. +.+++|.++|++||+++|+||+|.++.+.+.  .... .. .+   ..+|  ++   
T Consensus       177 -~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~~~-~~-~~---~~pd--~~---  243 (400)
T PTZ00125        177 -PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LLAH-DH-EG---VKPD--IV---  243 (400)
T ss_pred             -CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhHH-Hh-cC---CCCC--EE---
Confidence             168889888889999999974 5599999999999999999999988655543  1111 00 11   1245  23   


Q ss_pred             ccCcCccccc-cccC
Q 018147          347 SVSKGRYFHF-FSKW  360 (360)
Q Consensus       347 S~SK~~~g~~-RvGw  360 (360)
                      ++||++++|. |+||
T Consensus       244 ~~sK~l~~g~~~ig~  258 (400)
T PTZ00125        244 LLGKALSGGLYPISA  258 (400)
T ss_pred             EEcccccCCCcCcEE
Confidence            4789999886 9997

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.53  E-value=4.9e-13  Score=132.39  Aligned_cols=214  Identities=12%  Similarity=0.103  Sum_probs=128.7

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+     ..--++++.+++.+.+.+...    .+....+.+. ..++|+++....+.+.. +.+++++++++
T Consensus        40 G~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~----~~~~~~~~~~-~~~la~~l~~~~~~~~~-~~~~f~~sGse  113 (425)
T PRK08088         40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH----TCFQVLAYEP-YLELCEKMNQKVPGDFA-KKTLLVTTGSE  113 (425)
T ss_pred             CCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCC----ccccccCCHH-HHHHHHHHHHhCCCCCC-CEEEEeCCcHH
Confidence            4456666554     122388899999888876421    1222222333 34778888776553332 35666666667


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEE----------------EeecCCCCCcCC--CHHHHHHHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLV----------------PYYLDEATGWGL--ETSEVKKQLE  262 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~----------------~v~~~~~~~~~~--d~~~L~~~i~  262 (360)
                      |+..+++.... .....|+...++|.+....+...+....                ++|.+.. +...  +++.|++.++
T Consensus       114 a~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~l~~~l~  192 (425)
T PRK08088        114 AVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH-GVSEDDAIASIERIFK  192 (425)
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc-CccHHHHHHHHHHHHH
Confidence            66666655431 1235677779999887765555443211                1222111 1111  1445777665


Q ss_pred             HHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCce
Q 018147          263 AAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS  341 (360)
Q Consensus       263 ~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  341 (360)
                      .. ....++.++++. ..+|+.....+.+.+++|.++|+++|+++|+||+|.++.+.+.  ..++..    . .     .
T Consensus       193 ~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~--~~~~~~----~-~-----~  259 (425)
T PRK08088        193 ND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT--LFAMEQ----M-G-----V  259 (425)
T ss_pred             hc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhHHhh----c-C-----C
Confidence            21 111245555544 3378877888999999999999999999999999998655442  222211    1 1     1


Q ss_pred             EEEEeccCcCccccccccC
Q 018147          342 LVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       342 ~i~~~S~SK~~~g~~RvGw  360 (360)
                      ..-+.||||++++|+|+||
T Consensus       260 ~pdi~s~sK~l~~G~rig~  278 (425)
T PRK08088        260 AADLTTFAKSIAGGFPLAG  278 (425)
T ss_pred             CCCEEEEeccccCCCccee
Confidence            2337899999999999998

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.52  E-value=5.2e-13  Score=129.72  Aligned_cols=185  Identities=16%  Similarity=0.207  Sum_probs=136.3

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCC-CCCCCCC----cCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHH
Q 018147          137 QGLFSADSIERAWQILDQIPGRA-TGAYSHS----QGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~-~~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l  210 (360)
                      +...|+.+++++.+.+....... ...+...    .-+.+.|+.+++++      ++++ ++|++++|++++++.++..+
T Consensus         8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l------g~~~~~~v~~~~~~t~a~~~~~~~l   81 (371)
T PF00266_consen    8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL------GAPPDEEVVFTSNGTEALNAVASSL   81 (371)
T ss_dssp             S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH------TSSTTEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc------CCccccccccccccchhhhhhhhcc
Confidence            44678999999988877542211 1112111    22456677777777      3566 78999999999999999999


Q ss_pred             ---ccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          211 ---IRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       211 ---~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                         . .+||+|++..-.|+...    ...+..|.++..++.+.++  .+|++++++++++      +++++++++.+|-|
T Consensus        82 ~~~~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~t  152 (371)
T PF00266_consen   82 LNPL-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENST  152 (371)
T ss_dssp             HHHG-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTT
T ss_pred             cccc-ccccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhcc------ccceEEeecccccc
Confidence               5 49999999999988655    4445679999999887653  7899999999976      89999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      |...+   +++|.++|+++|+++++|.++.--...-     .+    ..+   ..|   +++.|.-| +.|.
T Consensus       153 G~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~i-----d~----~~~---~~D---~~~~s~~K-l~gp  205 (371)
T PF00266_consen  153 GVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVPI-----DL----DEL---GAD---FLVFSSHK-LGGP  205 (371)
T ss_dssp             TBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS-------T----TTT---TES---EEEEESTS-TTSS
T ss_pred             cEEee---eceehhhhhccCCceeEechhccccccc-----cc----ccc---ccc---eeeecccc-cCCC
Confidence            99999   9999999999999999999987632211     11    111   123   68889999 6654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.50  E-value=8.5e-13  Score=128.52  Aligned_cols=199  Identities=16%  Similarity=0.182  Sum_probs=131.9

Q ss_pred             CCccccCcc----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHH
Q 018147          128 PSILDRSET----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~a  202 (360)
                      ..++|+..+    ..+..|++++++.+.+....     .+... -..++++++++.+..      .++ .++++++++++
T Consensus        29 ~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~-----~~~~~-~~~~~~~~la~~l~~------~~~~~~~~~~SGseA   96 (375)
T PRK04260         29 KKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW-----HSPNL-YLNSLQEEVAQKLIG------DKDYLAFFCNSGAEA   96 (375)
T ss_pred             CEEEECCCCcccccCCCCHHHHHHHHHHHHhcC-----cccCc-cCCHHHHHHHHHHhc------CcCCEEEEcCccHHH
Confidence            345666444    23557889999988887632     12221 246788889887632      133 36889999999


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHH-HHHHHcCCeEE---------EeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYS-ASIALHGGTLV---------PYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~---------~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      +..+++.... ..+++|++.+..|.... ..+...|....         .++...    ..|++.+++.+.+      ++
T Consensus        97 ~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~dl~~l~~~l~~------~~  166 (375)
T PRK04260         97 NEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI----FNDLNSVKALVNK------NT  166 (375)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC----CCCHHHHHHhcCC------Ce
Confidence            9988877531 24678999888887533 33333232111         011100    1378888887754      67


Q ss_pred             cEEEEecCCCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCc
Q 018147          272 RALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK  350 (360)
Q Consensus       272 k~iil~~P~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK  350 (360)
                      .+|++..++|++|.+.+ .+.++++.++|+++|+++|+||+|.++...+.  ..++..  .++   .||     +.||||
T Consensus       167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~--~~~~~~--~~~---~pd-----i~t~sK  234 (375)
T PRK04260        167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK--LYAFEH--YGI---EPD-----IFTLAK  234 (375)
T ss_pred             EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhHh--hCC---CCC-----EEEecc
Confidence            78888888999998765 56799999999999999999999998654432  222111  111   256     338999


Q ss_pred             CccccccccC
Q 018147          351 GRYFHFFSKW  360 (360)
Q Consensus       351 ~~~g~~RvGw  360 (360)
                      ++++|+|+||
T Consensus       235 ~l~~G~~ig~  244 (375)
T PRK04260        235 GLANGVPVGA  244 (375)
T ss_pred             cccCCcceEE
Confidence            9999999997

>TIGR01814 kynureninase kynureninase

Probab=99.50  E-value=9.8e-13  Score=129.45  Aligned_cols=174  Identities=17%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             CCccccCcc-CCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 018147          128 PSILDRSET-QGLFSADSIERAWQILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM  205 (360)
Q Consensus       128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~  205 (360)
                      +.++.|+.+ ....|..+.+++.+.+........ ..|....+...+.+++.+ + +..|  +++++|++|+|++++++.
T Consensus        26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~~  101 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLHL  101 (406)
T ss_pred             CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHHH
Confidence            344555544 224477777887766654321001 111101111222222222 1 2234  678999999999999999


Q ss_pred             HHHHHccCCC---CEEEEcCCCchHH----HHHHHHcCCeE----EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEE
Q 018147          206 MMQLLIRSEN---DGILCPIPQYPLY----SASIALHGGTL----VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL  274 (360)
Q Consensus       206 ~~~~l~~~~g---d~Vlv~~P~y~~~----~~~~~~~g~~~----~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~i  274 (360)
                      ++..+.. ++   +.|++....|+..    ...++..|+++    +.++.+.  ++.+|++.+++.++..   ++++++|
T Consensus       102 ~~~~~~~-~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~~~~~l~~~~~~~---~~~t~lv  175 (406)
T TIGR01814       102 LLASFYK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE--EETLRLEDILDTIEKN---GDDIAVI  175 (406)
T ss_pred             HHHHhcC-CcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCC--CCccCHHHHHHHHHhc---CCCeEEE
Confidence            9998763 54   3688888899863    23445678887    3444433  3467999999887531   2378999


Q ss_pred             EEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       275 il~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      ++++++|.||.+++   +++|+++|+++|+++++|+++.-
T Consensus       176 ~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~  212 (406)
T TIGR01814       176 LLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV  212 (406)
T ss_pred             EEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc
Confidence            99999999999998   99999999999999999999876

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.49  E-value=9.2e-13  Score=128.35  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  244 (360)
                      ...|.+.+|++    .|    .+..+++++++.|+..++..+++ +||+|+++...|.+....    ++..|.++..++.
T Consensus        64 ~~~le~~la~L----Eg----~~~a~~~~SGmaAi~~~~~~ll~-~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~  134 (395)
T PRK08114         64 HFSLQEAMCEL----EG----GAGCALYPCGAAAVANAILAFVE-QGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP  134 (395)
T ss_pred             HHHHHHHHHHH----hC----CCeEEEEhHHHHHHHHHHHHHcC-CCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence            44555555554    23    46788888899999999998884 999999999888766554    4667999888763


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC--CEEEEccCCCCCccCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG--LVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~--i~lI~DeaY~~~~~~~~~~  322 (360)
                             .|.+++++++++      ++|+|++.+|.||||.+.+   +++|+++|+++|  +++++|.++..-..-..  
T Consensus       135 -------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p--  196 (395)
T PRK08114        135 -------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA--  196 (395)
T ss_pred             -------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccccCH--
Confidence                   367889998876      7999999999999999998   999999999984  99999999976332111  


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                              ..++   -|   |+++|.+|.++|
T Consensus       197 --------l~~G---aD---ivv~S~tKyl~G  214 (395)
T PRK08114        197 --------LDFG---ID---ISIQAGTKYLVG  214 (395)
T ss_pred             --------HHcC---Cc---EEEEcCcccccC
Confidence                    1122   23   899999998876

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.49  E-value=9.4e-13  Score=130.26  Aligned_cols=146  Identities=17%  Similarity=0.206  Sum_probs=109.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~  244 (360)
                      ...+++.+++++    |  . .+.|++++| +.|+..++..++ .+||+|+++...|....    ..+...|++++.++ 
T Consensus        71 ~~~le~~la~l~----g--~-~~~v~fsSG-~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  140 (437)
T PRK05613         71 VEALENRIASLE----G--G-VHAVAFASG-QAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-  140 (437)
T ss_pred             HHHHHHHHHHHh----C--C-CeEEEeCCH-HHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence            456666666665    3  1 244555555 588888888887 49999999999998763    45577899999887 


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +.     .|++++++++++      ++++|++.++.||+|.+.+   +++|+++|+++|+++|+|.++......     .
T Consensus       141 ~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~-----~  201 (437)
T PRK05613        141 NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALV-----R  201 (437)
T ss_pred             CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccccc-----C
Confidence            22     278999999877      7999999999999999988   999999999999999999998652221     1


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     .++   -|   +++.|+.|.++|
T Consensus       202 p~-----~~G---aD---ivv~S~~K~l~G  220 (437)
T PRK05613        202 PL-----ELG---AD---VVVASLTKFYTG  220 (437)
T ss_pred             hH-----HhC---CC---EEEeeccceecC
Confidence            11     122   23   889999998876

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.48  E-value=9.6e-13  Score=127.92  Aligned_cols=145  Identities=19%  Similarity=0.256  Sum_probs=110.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~  244 (360)
                      ...|.+.+|+..    |    .+.++++++++.|+..++.++++ +||+|+++...|......++.    .|.++..++.
T Consensus        57 ~~~le~~la~Le----~----g~~a~~~~SGmaAi~~~l~~ll~-~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~  127 (386)
T PF01053_consen   57 VRALEQRLAALE----G----GEDALLFSSGMAAISAALLALLK-PGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP  127 (386)
T ss_dssp             HHHHHHHHHHHH----T-----SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred             HHHHHHHHHHhh----c----ccceeeccchHHHHHHHHHhhcc-cCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence            344555555543    3    37799999999999999999995 999999999999877655554    6898888753


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC-CEEEEccCCCCCccCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~-i~lI~DeaY~~~~~~~~~~~  323 (360)
                             -|++++++++++      ++++|++..|.||+..+.+   +++|+++|+++| +++|+|+.+....+-.    
T Consensus       128 -------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~~----  187 (386)
T PF01053_consen  128 -------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQN----  187 (386)
T ss_dssp             -------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-----
T ss_pred             -------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeeec----
Confidence                   378999999987      8999999999999988887   999999999998 9999999998743321    


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       ++     .++   -|   |+++|.+|.++|
T Consensus       188 -pL-----~~G---aD---ivv~S~TKyl~G  206 (386)
T PF01053_consen  188 -PL-----ELG---AD---IVVHSATKYLSG  206 (386)
T ss_dssp             -GG-----GGT----S---EEEEETTTTTTT
T ss_pred             -cC-----cCC---ce---EEEeeccccccC
Confidence             11     111   13   899999998876

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.48  E-value=1.2e-11  Score=122.04  Aligned_cols=140  Identities=10%  Similarity=0.110  Sum_probs=109.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHHcc-C-CCCEEEEcCCCchHHHHHHHHcCCeEEEeec-
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIR-S-ENDGILCPIPQYPLYSASIALHGGTLVPYYL-  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~-~al~~~~~~l~~-~-~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-  244 (360)
                      ...+.+.+.+.+.+..|.. +.+..++++|+| .++.+++.++-. . +||.|+++.-+|.....++...|++++.++. 
T Consensus       103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~  181 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV  181 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence            5666667777776666743 124688888888 588777777641 1 5899999999999999999999999999996 


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .++++|.+|+++|+++|++.   +.+..++++++|+  |+.....+++++|+++|++||+++|+|++|+.
T Consensus       182 ~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~  246 (444)
T TIGR03531       182 LDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGL  246 (444)
T ss_pred             ecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcC
Confidence            24457999999999999852   1134566766776  66666677899999999999999999999985

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.46  E-value=2.5e-12  Score=126.19  Aligned_cols=193  Identities=12%  Similarity=0.104  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|++++++.+.++..... ...|.     .+....+++.+.+..+    .+.+++++++++|...+++....      +
T Consensus        52 ~~p~v~~a~~~~~~~~~~~-~~~~~-----~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e~Alk~ar~~~~~~~~  121 (397)
T TIGR03246        52 AHPELVKALIEQADKLWHI-GNGYT-----NEPVLRLAKKLVDATF----ADKVFFCNSGAEANEAALKLARRYALDKHG  121 (397)
T ss_pred             CCHHHHHHHHHHHHhcccc-cCccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            4888999999888763210 11222     2334455555554333    36899999999999999997621      0


Q ss_pred             -CCCEEEEcCCCchHHHH-HHHHcCCeEEE---eecCCCC-Cc-CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          214 -ENDGILCPIPQYPLYSA-SIALHGGTLVP---YYLDEAT-GW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       214 -~gd~Vlv~~P~y~~~~~-~~~~~g~~~~~---v~~~~~~-~~-~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                       ..+.|+..+-.|..... .+...+.....   -|...+- .+ ..|++.+++.+.+      ++++|++..++++.|..
T Consensus       122 ~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~aavi~Epi~~~~G~~  195 (397)
T TIGR03246       122 ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISD------KTCAVIVEPIQGEGGVV  195 (397)
T ss_pred             CCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhcc------CeEEEEEecccCCCCCc
Confidence             23567777777766533 33333321100   0000000 00 1278999988864      67777766334444544


Q ss_pred             C-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          287 L-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       287 ~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      . +.+.+++|.++|++||+++|+||+|.++...+.  .......  ++   .+|     +-++||++++|+++||
T Consensus       196 ~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~--~~a~~~~--gv---~pD-----i~t~~K~lggG~piga  258 (397)
T TIGR03246       196 PADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYMHY--GV---TPD-----ILTSAKALGGGFPIGA  258 (397)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc--chhhhhc--CC---CCC-----EEEeehhhhCCcceeE
Confidence            3 789999999999999999999999988755443  2221111  11   255     2378999999999997

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.45  E-value=1.2e-11  Score=119.42  Aligned_cols=201  Identities=15%  Similarity=0.157  Sum_probs=141.0

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATG----AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA  199 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga  199 (360)
                      .+.++||++|   ...-.+++++++.+.+++.+. +..    -++...-+.+|.+.+|+|+    |   .+.-+++++|-
T Consensus        38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~-g~~gsR~i~G~~~~h~~LE~~lA~f~----g---~e~al~f~SGy  109 (388)
T COG0156          38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGV-GAGGSRLISGTSDLHVELEEELADFL----G---AEAALLFSSGF  109 (388)
T ss_pred             CceeEeeeccCcccccCCHHHHHHHHHHHHHhCC-CCCCcCcccCCcHHHHHHHHHHHHHh----C---CCcEEEEcccc
Confidence            4667888888   556688899999999988532 122    2333333556666666665    4   23455666665


Q ss_pred             HHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       200 ~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                       .|...++.+|+. ++|-|+...-.|....+.++..+++++.+..       .|++.|++.+++.+..+.+.+.|+...-
T Consensus       110 -~AN~~~i~~l~~-~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegV  180 (388)
T COG0156         110 -VANLGLLSALLK-KGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGV  180 (388)
T ss_pred             -hhHHHHHHHhcC-CCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEecc
Confidence             455566778884 8999999999999999999999999998864       4789999999886533332334443343


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      -.=.|-+-+   +++|++++++|+.++++||+|+--++++..  ..+.... ++..  .+ ..|.++||||+|+
T Consensus       181 fSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~G--rG~~e~~-g~~~--~~-vdi~~gTlsKAlG  245 (388)
T COG0156         181 FSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNG--RGLAEHF-GLEP--EE-VDIIVGTLGKALG  245 (388)
T ss_pred             ccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCC--ccHHHHh-CCCC--cc-ceEEEEEchhhhc
Confidence            333677777   999999999999999999999999998642  2222221 1111  12 3699999999886

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.44  E-value=1.7e-11  Score=121.15  Aligned_cols=199  Identities=15%  Similarity=0.057  Sum_probs=133.2

Q ss_pred             CCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      .++++|+.+   .....+++++++.+.+++.+. +..+=.-..|.    .+|.+.+|+|+    |    .+..++.+.+.
T Consensus       102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~-g~~gSrl~~G~~~~h~~LE~~LA~f~----g----~e~all~sSGy  172 (476)
T PLN02955        102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGM-GPKGSALICGYTTYHRLLESSLADLK----K----KEDCLVCPTGF  172 (476)
T ss_pred             ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCC-CCCCcCccccChHHHHHHHHHHHHHH----C----CCcEEEECChH
Confidence            356677777   556688899999998887653 22222223344    56777777776    3    34555555555


Q ss_pred             HHHHHHHHHHc-------------cCCCCEEEEcCCCchHHHHHHHHc----CCeEEEeecCCCCCcCCCHHHHHHHHHH
Q 018147          201 PAVHMMMQLLI-------------RSENDGILCPIPQYPLYSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLEA  263 (360)
Q Consensus       201 ~al~~~~~~l~-------------~~~gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~L~~~i~~  263 (360)
                      .|...++.+|.             .+.+|.|+...-.|......++..    +++++.++.       -|++.|++.++.
T Consensus       173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~  245 (476)
T PLN02955        173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSS  245 (476)
T ss_pred             HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHh
Confidence            55555555552             135677888888898888888876    466666653       379999999875


Q ss_pred             HHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceE
Q 018147          264 AKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (360)
Q Consensus       264 ~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  342 (360)
                      ...   +. .+|++.+ -++.|-+.+   +++|.++|++||.++|+||+|..++++..  -......   ++ ..++ ..
T Consensus       246 ~~~---~~-~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~--G~G~~e~---~g-~~~d-i~  311 (476)
T PLN02955        246 CKM---KR-KVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGEN--GGGVAEE---FN-CEAD-VD  311 (476)
T ss_pred             CCC---Cc-eEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCC--CCcHHHH---hC-CCCC-Cc
Confidence            321   23 4555555 788999999   88899999999999999999999888753  1222221   11 0134 46


Q ss_pred             EEEeccCcCcc--ccc
Q 018147          343 VSFQSVSKGRY--FHF  356 (360)
Q Consensus       343 i~~~S~SK~~~--g~~  356 (360)
                      |+++||||+|+  ||.
T Consensus       312 ii~~TLsKA~G~~GGf  327 (476)
T PLN02955        312 LCVGTLSKAAGCHGGF  327 (476)
T ss_pred             EEEEeCccchhccCce
Confidence            99999999987  665

>PLN02624 ornithine-delta-aminotransferase

Probab=99.41  E-value=9.6e-12  Score=124.66  Aligned_cols=208  Identities=12%  Similarity=0.096  Sum_probs=127.3

Q ss_pred             CCCccccCcc--CC---CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET--QG---LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~--~~---~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+  ..   --+|.+++++.+.+..... ....|. .....+|.+.++++    .+    .+.+++++++++
T Consensus        74 G~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~-~~~~~~-~~~~~~la~~L~~~----~~----~~~~~f~~SGse  143 (474)
T PLN02624         74 GKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTL-SSRAFY-NDKFPEFAEYLTSM----FG----YDMVLPMNTGAE  143 (474)
T ss_pred             CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCC-cccccC-CHHHHHHHHHHHhh----cC----CCeEEEeCChHH
Confidence            4556777555  12   2289999999998887542 111122 22234444444443    33    368999999999


Q ss_pred             HHHHHHHHHcc------C-C-CC-EEEEcCCCchHHHHHHHHcCCeEE-E---eecCCCC---CcCCCHHHHHHHHHHHH
Q 018147          202 AVHMMMQLLIR------S-E-ND-GILCPIPQYPLYSASIALHGGTLV-P---YYLDEAT---GWGLETSEVKKQLEAAK  265 (360)
Q Consensus       202 al~~~~~~l~~------~-~-gd-~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~---~~~~d~~~L~~~i~~~~  265 (360)
                      |+..+++....      + + +. .|+...-.|.+............. .   .|..++-   .| -|++.+++.++.  
T Consensus       144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~--  220 (474)
T PLN02624        144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEE--  220 (474)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHh--
Confidence            99999875431      0 1 22 577776667654332222211110 0   0110000   01 268889888864  


Q ss_pred             hcCCCccEEEEecCCCCcccCCCHHH-HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          266 AKGITVRALVVINPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       266 ~~g~~~k~iil~~P~NPTG~~~~~~~-l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                       .+.++.+|++..++|++|.+++.++ +++|.++|++||+++|+||+|.++.+.+.  ...+ .. .+   ..+|  ++ 
T Consensus       221 -~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~--~~a~-~~-~~---i~pD--iv-  289 (474)
T PLN02624        221 -DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK--MLAC-DW-EE---VRPD--VV-  289 (474)
T ss_pred             -CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc--hhhH-Hh-cC---CCCC--EE-
Confidence             2236778888888999999998775 99999999999999999999998655442  1111 00 11   1244  23 


Q ss_pred             EeccCcCcccc-ccccC
Q 018147          345 FQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       345 ~~S~SK~~~g~-~RvGw  360 (360)
                        +|||++++| +++||
T Consensus       290 --~lsK~lggG~~piga  304 (474)
T PLN02624        290 --ILGKALGGGVIPVSA  304 (474)
T ss_pred             --EecccccCCCCccee
Confidence              368999887 79986

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.40  E-value=1.9e-11  Score=120.27  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=125.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~  213 (360)
                      --+|.+++++.+.+.....  .   .... ..+....+++.+.+..+   ..+.+++++++++|+..+++....     +
T Consensus        56 h~~p~v~~ai~~q~~~~~~--~---~~~~-~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e~AlklAr~~~~~~g  126 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLWH--T---SNVF-YSAPPLKLAEELVTASR---FAEKVFLCNSGTEANEAAIKLVRKWASSQG  126 (408)
T ss_pred             CCCHHHHHHHHHHHHhccc--c---cccc-CCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHHHHHHHHHHHHHhhC
Confidence            3478899999888876422  1   1111 12334556666655322   126899999999999999886531     1


Q ss_pred             --C-CCEEEEcCCCchHHHHHHHH-cCCeEEE---eecCCC---CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          214 --E-NDGILCPIPQYPLYSASIAL-HGGTLVP---YYLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       214 --~-gd~Vlv~~P~y~~~~~~~~~-~g~~~~~---v~~~~~---~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                        + ..+|+.....|.+....... .|.....   .++..+   -.| .|++.+++.+..      +..+.+++.|.+++
T Consensus       127 ~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~------~~~aavi~eP~~~~  199 (408)
T PRK04612        127 RPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAG------GDVAAVMLEPIQGE  199 (408)
T ss_pred             CCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCC------CCEEEEEECCccCC
Confidence              1 24688888888765443322 2211100   011110   011 278888887753      45678888998888


Q ss_pred             ccCCC--HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLA--EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~--~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+++  .+.+++|.++|+++|+++|+||+|.++...+.  +.   ....      .+ ....+.+|||++++|+|+||
T Consensus       200 gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~---a~~~------~~-~~pdi~t~~K~l~~G~piga  266 (408)
T PRK04612        200 GGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT--LF---AHWQ------EQ-VTPDIVTLAKALGGGFPIGA  266 (408)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--hh---hhhh------cC-CCCCEEEEcchhcCCCceEE
Confidence            88777  56899999999999999999999998766542  21   1111      11 13457899999999999997

>PLN03032 serine decarboxylase; Provisional

Probab=99.40  E-value=3.9e-11  Score=116.26  Aligned_cols=163  Identities=7%  Similarity=-0.068  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHcc-CCCCEEE
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGIL  219 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l~~-~~gd~Vl  219 (360)
                      .+++++.+.+.+........+.......++.+.+.+++.+.+|  ++++++  ++|+|+|++...++..... .++..|+
T Consensus        38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi  115 (374)
T PLN03032         38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY  115 (374)
T ss_pred             HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence            3666766666543221122222223457778888888887777  456666  9999999999888776531 2456899


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.-.|.....+++.+|..+..+|++++  ..+|+++|+++|++.   ..++.+|+++..+|+||.+-+   +++|+++|
T Consensus       116 ~s~~~H~Sv~kaa~~lg~~~~~V~~d~~--g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i~  187 (374)
T PLN03032        116 ASRESHYSVFKAARMYRMEAVKVPTLPS--GEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRIL  187 (374)
T ss_pred             eCCCceeHHHHHHHHcCCCCeEeeeCCC--CcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHHH
Confidence            9999999999999999999999998765  489999999999762   114667788889999999977   88999999


Q ss_pred             HHcC-----CEEEEccCCCCC
Q 018147          300 KKEG-----LVLLADEVYQEN  315 (360)
Q Consensus       300 ~~~~-----i~lI~DeaY~~~  315 (360)
                      +++|     +|+++|.+|+.+
T Consensus       188 ~~~g~~~~~~~lHvDaA~gg~  208 (374)
T PLN03032        188 KELGYTEDRFYIHCDGALFGL  208 (374)
T ss_pred             HHhCCCCCCeeEEEEccchhh
Confidence            9996     599999999774

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.39  E-value=1.8e-11  Score=121.03  Aligned_cols=202  Identities=15%  Similarity=0.117  Sum_probs=125.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC-CCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~-~gd~  217 (360)
                      --+|.+++++.+.+.....   ..+..  ...+....+|+.+.+.... ...+.+++++++++|+..+++....- ...+
T Consensus        56 h~~p~v~~ai~~ql~~~~~---~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~  129 (421)
T PRK09792         56 HRHPDLVAAVEQQLQQFTH---TAYQI--VPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAVENAVKIARAHTGRPG  129 (421)
T ss_pred             CCCHHHHHHHHHHHHhccC---cccCc--cCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHHHHHHHHHHHhcCCCe
Confidence            3488899999988876421   11211  1223344556655543221 12357899999999999998876421 2357


Q ss_pred             EEEcCCCchHHHHHHHHc-CC-------------eEEEeecCCCCCcCC----CHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          218 ILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEATGWGL----ETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~----d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      |+.....|.+........ |.             .++.+|...+.. ++    +++.+++.++... ...++.+|++.-.
T Consensus       130 ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~-~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv  207 (421)
T PRK09792        130 VIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLH-GISTQDSLDAIERLFKSDI-EAKQVAAIIFEPV  207 (421)
T ss_pred             EEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccc-cccHHHHHHHHHHHHHhcc-CCCceEEEEEccc
Confidence            888888887654322221 21             122222221110 12    2366666665310 0125666666544


Q ss_pred             CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          280 GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       280 ~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      ++|+|..+ +.+.+++|.++|++||+++|+||+|.+|.+.+.  ..++..+    + ..||     +.+|||++++|+|+
T Consensus       208 q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~--~~a~~~~----~-~~pD-----i~t~gK~l~~G~pi  275 (421)
T PRK09792        208 QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK--LFAMDHY----A-DKPD-----LMTMAKSLAGGMPL  275 (421)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc--hhHHHhc----C-CCCc-----EEEeehhhcCCCce
Confidence            89999876 889999999999999999999999999877653  3332222    1 1255     57899999999999


Q ss_pred             cC
Q 018147          359 KW  360 (360)
Q Consensus       359 Gw  360 (360)
                      ||
T Consensus       276 ga  277 (421)
T PRK09792        276 SG  277 (421)
T ss_pred             EE
Confidence            97

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.39  E-value=1.3e-11  Score=119.23  Aligned_cols=147  Identities=18%  Similarity=0.213  Sum_probs=114.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~  244 (360)
                      ...|.+.++++-        ..++.+.+++++.||..++..|++ +||.|+++...|.+..    ..++..|.++..++.
T Consensus        65 ~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~-~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~  135 (396)
T COG0626          65 RDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLK-AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP  135 (396)
T ss_pred             HHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcC-CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence            456666666653        357789999999999999999985 9999999998887543    445667888887653


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      .       +.+++++++.+     +++|+|++-.|.|||-.+.+   +.+|+++|+++|+++|+|+.|..-++...    
T Consensus       136 ~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~P----  196 (396)
T COG0626         136 G-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRP----  196 (396)
T ss_pred             C-------ChHHHHHHhcc-----cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccCh----
Confidence            2       45566666652     17999999999999998888   99999999999999999999998666542    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                            -.++   -|   |+++|.+|.++|.
T Consensus       197 ------L~~G---aD---IVvhSaTKyl~GH  215 (396)
T COG0626         197 ------LELG---AD---IVVHSATKYLGGH  215 (396)
T ss_pred             ------hhcC---CC---EEEEeccccccCC
Confidence                  1222   23   8999999998873

>PRK04311 selenocysteine synthase; Provisional

Probab=99.39  E-value=3.9e-11  Score=119.35  Aligned_cols=190  Identities=15%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-----cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHS-----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      ..|.+...+|+++++++.+.+....   ...|...     .-+..+++.+++++    |    .++.+++++++.|+..+
T Consensus        90 ~tNlg~s~l~~~v~eav~~~~~~~~---~le~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~  158 (464)
T PRK04311         90 HTNLGRALLSEAAIEAVTEAARGYS---NLEYDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLA  158 (464)
T ss_pred             eccCCCCCCCHHHHHHHHHHHhccc---ccccchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHH
Confidence            3444445678999999988876532   1122211     11356677777766    3    34677888888999998


Q ss_pred             HHHHccCCCCEEEEcCCCchH------HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          207 MQLLIRSENDGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +..+  .+||+|+++...+..      +...++..|++++.+..+.    ..+++++++++++      ++++|++.+++
T Consensus       159 l~~l--~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~------~TklV~~vh~s  226 (464)
T PRK04311        159 LNAL--AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINE------NTALLLKVHTS  226 (464)
T ss_pred             HHHh--CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCc------cCeEEEEEcCC
Confidence            8775  489999999864432      2345677899999987543    3478999999987      79999999999


Q ss_pred             CC--cc--cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc----cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          281 NP--TG--QVLAEENQRAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       281 NP--TG--~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                      ||  +|  ...+   +++|+++|+++|+++|+|.+.+.+.    |.-. ..+.+.+.. .++   -|   +++.|..|.+
T Consensus       227 N~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~-~~p~~~~~l-~~G---aD---iv~fSg~K~L  295 (464)
T PRK04311        227 NYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP-DEPTVQELL-AAG---VD---LVTFSGDKLL  295 (464)
T ss_pred             CccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCCchhhHH-hcC---Cc---EEEecCcccc
Confidence            99  34  4455   9999999999999999999644321    1100 011222221 122   23   8889999988


Q ss_pred             ccc
Q 018147          353 YFH  355 (360)
Q Consensus       353 ~g~  355 (360)
                      +|.
T Consensus       296 gGp  298 (464)
T PRK04311        296 GGP  298 (464)
T ss_pred             cCC
Confidence            753

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.39  E-value=1.1e-11  Score=118.40  Aligned_cols=145  Identities=19%  Similarity=0.208  Sum_probs=114.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH----HcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~  244 (360)
                      ...+.+.+++..    |    ..+.+++++++.|+..++..|+ ..|+.|+..+..|......++    .+|++...+.+
T Consensus        79 ~~~le~~iaal~----g----a~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~  149 (409)
T KOG0053|consen   79 RDVLESGIAALE----G----AAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV  149 (409)
T ss_pred             hHHHHHHHHHHh----C----CceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence            345555555544    3    4568888889999999999999 599999999999987655444    46777777654


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      +       +++++++++++      ++++|++-.|.||+..+.+   +++|.++|+++|++||+|+.+...++.+.    
T Consensus       150 ~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~p----  209 (409)
T KOG0053|consen  150 D-------DLKKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDP----  209 (409)
T ss_pred             h-------hHHHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccCh----
Confidence            4       57888888887      7999999999999999988   99999999999999999999998654432    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                            -.++   -|   |+++|.+|.++|
T Consensus       210 ------L~lG---AD---IV~hSaTKyi~G  227 (409)
T KOG0053|consen  210 ------LPLG---AD---IVVHSATKYIGG  227 (409)
T ss_pred             ------hhcC---CC---EEEEeeeeeecC
Confidence                  1122   24   899999999887

>PLN00144 acetylornithine transaminase

Probab=99.38  E-value=8.1e-12  Score=121.96  Aligned_cols=193  Identities=10%  Similarity=0.014  Sum_probs=121.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--C----
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S----  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--~----  213 (360)
                      -+|++++++.+.+.....  ...+    ...+....+|+.+.+..    ..+.+++++++++|+..+++....  .    
T Consensus        32 ~~p~v~~ai~~q~~~~~~--~~~~----~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e~AlklAr~~~~~~~~  101 (382)
T PLN00144         32 GDPDWVKAVAEQAGTLAH--VSNV----YHTIPQVELAKRLVASS----FADRVFFCNSGTEANEAAIKFARKYQRVRAP  101 (382)
T ss_pred             CCHHHHHHHHHHHHhcCC--cccc----ccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHHHHHHHHHHHHhccCC
Confidence            378899999998886432  1111    11234455666665432    246899999999999999886531  0    


Q ss_pred             --C------CCEEEEcCCCchHHHHHHHHcCCeE-E---EeecCCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          214 --E------NDGILCPIPQYPLYSASIALHGGTL-V---PYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       214 --~------gd~Vlv~~P~y~~~~~~~~~~g~~~-~---~v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                        +      ..+|+...-.|.+............ .   ..+...+..+  -.|++.|++.+..     .++++|++.--
T Consensus       102 ~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~aavi~eP~  176 (382)
T PLN00144        102 DKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQK-----GKTAAVFVEPV  176 (382)
T ss_pred             CCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCC-----CCeEEEEEccc
Confidence              0      2468888888887654433322211 0   0111110000  1268888887743     15666665533


Q ss_pred             CCCcccCCCHHH--HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccc
Q 018147          280 GNPTGQVLAEEN--QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF  357 (360)
Q Consensus       280 ~NPTG~~~~~~~--l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~R  357 (360)
                      +|| |.+++.+.  +++|.++|++||+++|+||+|.+|...+.  ..+. .. .+   ..||     +.+|||++++|+|
T Consensus       177 q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~--~~~~-~~-~~---~~PD-----i~t~sK~l~~G~p  243 (382)
T PLN00144        177 QGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY--LWAH-EA-YG---VEPD-----IMTLAKPLAGGLP  243 (382)
T ss_pred             cCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--Hhhh-hh-cC---CCCC-----EEEecccccCCcc
Confidence            889 55555444  99999999999999999999999766553  2111 01 11   1256     7889999999999


Q ss_pred             ccC
Q 018147          358 SKW  360 (360)
Q Consensus       358 vGw  360 (360)
                      +||
T Consensus       244 ig~  246 (382)
T PLN00144        244 IGA  246 (382)
T ss_pred             eEE
Confidence            997

>PRK02769 histidine decarboxylase; Provisional

Probab=99.38  E-value=4.5e-11  Score=116.36  Aligned_cols=139  Identities=10%  Similarity=-0.016  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~  245 (360)
                      ..++.+.+.+++.+.+|.  +++++  ++|+|+|++...++..... .+++.|+++.-.|+.....++.+|.+.+.++.+
T Consensus        63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~  140 (380)
T PRK02769         63 SFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL  140 (380)
T ss_pred             hHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence            466777777777777664  34444  8899999997666544321 378899999999999999999999998888887


Q ss_pred             CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC---CEEEEccCCCCCcc
Q 018147          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG---LVLLADEVYQENVY  317 (360)
Q Consensus       246 ~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~---i~lI~DeaY~~~~~  317 (360)
                      ++  ..+|+++|++++++.   +.++.+|+++.++|+||.+-+   +++|+++|+++|   +++++|.+|+.+..
T Consensus       141 ~~--g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~  207 (380)
T PRK02769        141 PN--GEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMIL  207 (380)
T ss_pred             CC--CcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceee
Confidence            53  479999999999873   335889999999999999988   899999999998   69999999988544

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.37  E-value=3.7e-11  Score=117.42  Aligned_cols=175  Identities=19%  Similarity=0.195  Sum_probs=129.6

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH-HHHHHHHcCCeEE
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YSASIALHGGTLV  240 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~-~~~~~~~~g~~~~  240 (360)
                      .|..+....+|.+++++++        ..+.++.|++++.|+++++...+ +|||.|  +.++|.. +...++..|+.++
T Consensus        66 ~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~Al~ll~~l~l-~pGDeV--psn~~f~Tt~ahIe~~Gav~v  134 (450)
T TIGR02618        66 AYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRGAENLLSQIAI-KPGDYV--PGNMYFTTTRYHQEKNGATFV  134 (450)
T ss_pred             hhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHHHHHHHHHhCC-CCcCEE--CCceeHHHHHHHHHhCCeEEE
Confidence            5888878899999999998        34679999999999998876667 499977  7778754 4444788898777


Q ss_pred             EeecCC--------CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC-cccCCCHHHHHHHHHHHHHcCCEEEEccC
Q 018147          241 PYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQVLAEENQRAIVDFCKKEGLVLLADEV  311 (360)
Q Consensus       241 ~v~~~~--------~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP-TG~~~~~~~l~~i~~la~~~~i~lI~Dea  311 (360)
                      .++.++        ..++.+|+++|+++|++..  ..++++|.+.+++|- .|.+++.+++++|.++|++||+.||+|.+
T Consensus       135 Di~~dea~~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaA  212 (450)
T TIGR02618       135 DIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDAT  212 (450)
T ss_pred             eeecccccccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence            665442        3356889999999997521  124567888899885 58999999999999999999999999998


Q ss_pred             CCC-Ccc-----CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          312 YQE-NVY-----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       312 Y~~-~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      ... ..+     ++.-...++..+..+|.. +-|   .++.|..|.+.
T Consensus       213 R~~gNA~~I~~re~g~~~~~i~ei~~e~~~-~aD---~~~~S~~Kd~~  256 (450)
T TIGR02618       213 RCVENAYFIKEREQGYEDKSIAEILKEMMS-YAD---GCTMSGKKDCL  256 (450)
T ss_pred             chhhChhhhhcccccccCCCHHHHHHHHhc-cCc---EEEEeeccCCC
Confidence            755 212     111124466666666543 345   46778888543

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.37  E-value=1.2e-11  Score=122.62  Aligned_cols=201  Identities=14%  Similarity=0.066  Sum_probs=131.0

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +..++|+..+     -..-++.+++++.+.+++.    ...|....+..+|.+.+++.+    .   ..+.+++++++++
T Consensus        49 G~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~----~~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGse  117 (426)
T PRK00062         49 GNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG----LSFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTE  117 (426)
T ss_pred             CCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC----CcCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHH
Confidence            4455665544     1245888999999988773    223444444555555555543    1   3568999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CCe------------EE-----EeecCCCCCcCCCHHHHHHHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGT------------LV-----PYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~~------------~~-----~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      |+..+++.... ..++.|+..++.|.++...+... |..            ..     .+...     ..|++.+++.++
T Consensus       118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~  192 (426)
T PRK00062        118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP-----YNDLEAVEELFE  192 (426)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC-----CCCHHHHHHHHH
Confidence            99999997542 13688999999999876433322 100            00     01111     137888988886


Q ss_pred             HHHhcCCCccEEEEe-cCCCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCc
Q 018147          263 AAKAKGITVRALVVI-NPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI  340 (360)
Q Consensus       263 ~~~~~g~~~k~iil~-~P~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~  340 (360)
                      ..   ..++.+|++. -++| +|.+.+ .+.+++|.++|++||+++|+||+|.++.+++   .... ... +   ..|| 
T Consensus       193 ~~---~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~---~~~~-~~~-~---~~pD-  259 (426)
T PRK00062        193 EY---GDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL---GGAQ-GYY-G---VTPD-  259 (426)
T ss_pred             hC---CCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC---ccHH-HHh-C---CCcc-
Confidence            42   1256566665 3355 787776 7789999999999999999999999874432   1111 111 1   1245 


Q ss_pred             eEEEEeccCcCccccccccC
Q 018147          341 SLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       341 ~~i~~~S~SK~~~g~~RvGw  360 (360)
                          +.+|||++++|+++||
T Consensus       260 ----i~~~gK~l~~G~p~ga  275 (426)
T PRK00062        260 ----LTTLGKIIGGGLPVGA  275 (426)
T ss_pred             ----hHhhhhHhhCCCccee
Confidence                4689999999999986

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.37  E-value=3.3e-11  Score=119.76  Aligned_cols=213  Identities=15%  Similarity=0.131  Sum_probs=127.7

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+.+++.+.+.....     +.......+.+.++|+.+.+..+  ..-+.+++++++++
T Consensus        40 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-----~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsE  112 (443)
T PRK08360         40 GNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH-----YTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSD  112 (443)
T ss_pred             CCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC-----ccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHH
Confidence            4455666444     224488899999988876432     11111123445566666655432  12258999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHH-HHHHcCC------------eEEEeecCCC--CCcC--------CCHHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSA-SIALHGG------------TLVPYYLDEA--TGWG--------LETSEV  257 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~-~~~~~g~------------~~~~v~~~~~--~~~~--------~d~~~L  257 (360)
                      |+..+++.... .....|+...-.|.+... .+...|.            .+..++....  ..|.        -+++.+
T Consensus       113 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (443)
T PRK08360        113 ANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYI  192 (443)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHH
Confidence            99999887532 134567777777765432 2222221            1222222110  0011        123445


Q ss_pred             HHHHHHHHhcCCCccEEEEecC-CCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          258 KKQLEAAKAKGITVRALVVINP-GNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       258 ~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++.++... .+.++++|++. | +||+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+.  +.+....  ++  
T Consensus       193 ~~~l~~~~-~~~~iAAvi~e-P~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~--~~a~~~~--~~--  264 (443)
T PRK08360        193 KEKFEGEV-YAEGVAALFAE-PIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK--WFAIEHF--GV--  264 (443)
T ss_pred             HHHHHhcc-CCCCeEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--chhhhhc--CC--
Confidence            55553210 12367666665 6 799999887 55799999999999999999999999766553  2222111  11  


Q ss_pred             CCCCceEEEEeccCcCccccccccC
Q 018147          336 GEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       .||  ++   +|||++++|+|+||
T Consensus       265 -~pD--ii---tlsK~l~~G~piga  283 (443)
T PRK08360        265 -EPD--II---TLGKPLGGGLPISA  283 (443)
T ss_pred             -CCC--EE---EecccccCCceeEE
Confidence             255  23   67999999999997

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.36  E-value=2.9e-11  Score=118.80  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=127.4

Q ss_pred             CCCCccccCcc--CCC---CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET--QGL---FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~--~~~---~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ++.+++|+..+  ...   -+|.+++++.+.++.... ....+ .    ......+++.+.+..|    .+.++++++++
T Consensus        35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~-~~~~~-~----~~~~~~l~~~l~~~~~----~~~~~~~~SGs  104 (401)
T TIGR01885        35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL-SSRAF-Y----NDVFGEFAEYVTKLFG----YDKVLPMNTGA  104 (401)
T ss_pred             CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc-ccccc-C----CHHHHHHHHHHHhhcC----CCEEEEeCccH
Confidence            34556777666  122   389999999888876432 11111 1    2233444444444434    36899999999


Q ss_pred             HHHHHHHHHHcc--------CC-CCEEEEcCCCchHH-HHHHHHcCC------------eEEEeecCCCCCcCCCHHHHH
Q 018147          201 PAVHMMMQLLIR--------SE-NDGILCPIPQYPLY-SASIALHGG------------TLVPYYLDEATGWGLETSEVK  258 (360)
Q Consensus       201 ~al~~~~~~l~~--------~~-gd~Vlv~~P~y~~~-~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~L~  258 (360)
                      +|+..+++.+..        .+ .+.|+...-.|... ...+...+.            .+..++       ..|+++|+
T Consensus       105 ~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le  177 (401)
T TIGR01885       105 EAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIP-------YNNLEALE  177 (401)
T ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeC-------CCCHHHHH
Confidence            999999987521        12 35677777777642 333333221            122221       12689999


Q ss_pred             HHHHHHHhcCCCccEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      +.+++.   +.++.+|++..+++++|.+.+.+ .+++|.++|++||+++|+||+|.++.+.+.  ..++ .. .++   .
T Consensus       178 ~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~--~~~~-~~-~~~---~  247 (401)
T TIGR01885       178 EALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK--LLCV-DH-ENV---K  247 (401)
T ss_pred             HHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hhHH-hh-cCC---C
Confidence            888642   23566777667799999999654 699999999999999999999988655543  2121 11 111   1


Q ss_pred             CCceEEEEeccCcCcccc-ccccC
Q 018147          338 KDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      +|  ++   ++||++++| +|+||
T Consensus       248 ~d--i~---~~gK~l~~g~~~ig~  266 (401)
T TIGR01885       248 PD--IV---LLGKALSGGVYPVSA  266 (401)
T ss_pred             CC--EE---EeeccccCCCCCcEE
Confidence            44  23   468999876 78886

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.34  E-value=1.1e-10  Score=115.94  Aligned_cols=189  Identities=13%  Similarity=0.140  Sum_probs=127.2

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      ..|.+...+|+++++++.+.+.....   ..|.-     ..-+..+++.+++++    |    .+..+++++++.|+..+
T Consensus        85 ~tNlg~s~l~~~vieAv~~~~~~y~~---l~~~l~~g~~g~r~~~le~~lA~l~----g----ae~alvv~sg~aAi~l~  153 (454)
T TIGR00474        85 HTNLGRAPLAEEAIEAVTDAARGYSN---LEYDLETGKRGSRYSHVEGLLCELT----G----AEDALVVNNNAAAVLLA  153 (454)
T ss_pred             eccCCCCCCCHHHHHHHHHHHhcccc---hhccccccccchHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHH
Confidence            33444446789999999888875421   12221     111467777777776    3    23456677788899888


Q ss_pred             HHHHccCCCCEEEEcCCCchH------HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          207 MQLLIRSENDGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +..+  .+||+|+++...|..      +...++..|++++.++.+.    ..+++++++++++      ++++|++.+++
T Consensus       154 l~~l--~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~s  221 (454)
T TIGR00474       154 LNTL--AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITE------NTALLLKVHTS  221 (454)
T ss_pred             HHHh--CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCc------CCEEEEEEccC
Confidence            8665  489999999876532      2345677899999887542    3478999999977      79999999999


Q ss_pred             CCc--c--cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc----cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          281 NPT--G--QVLAEENQRAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       281 NPT--G--~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                      |++  |  .+.+   +++|+++|+++|+++++|...+-+.    |+-. ..+.+.... .++   -|   +++.|..|.+
T Consensus       222 N~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~-~~p~~~~~~-~~G---aD---iv~fSg~K~L  290 (454)
T TIGR00474       222 NYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLP-DEPTVQEVI-AAG---VD---LVTFSGDKLL  290 (454)
T ss_pred             cccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCcccccHh-HcC---CC---EEEecCcccc
Confidence            995  5  3556   9999999999999999998644321    1000 011111111 122   23   8889999988


Q ss_pred             cc
Q 018147          353 YF  354 (360)
Q Consensus       353 ~g  354 (360)
                      +|
T Consensus       291 gG  292 (454)
T TIGR00474       291 GG  292 (454)
T ss_pred             CC
Confidence            65

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.33  E-value=7.4e-11  Score=116.53  Aligned_cols=163  Identities=10%  Similarity=0.028  Sum_probs=125.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHcc----
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR----  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~~l~~----  212 (360)
                      ...+.+.+.+...+..... ....   .....++.+.+.+++.+.+|.+-..+++..  |+|+|++...++.+...    
T Consensus        52 ~~~p~~~~~~~~~l~~~~~-np~s---~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~  127 (431)
T TIGR01788        52 WMEPEARKLMDETINKNMI-DKDE---YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRK  127 (431)
T ss_pred             CCCHHHHHHHHHHHhcCCC-Cccc---CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHH
Confidence            3456677777777765422 1212   223457888888888888775311145544  89999999988765431    


Q ss_pred             ---CC-----CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          213 ---SE-----NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       213 ---~~-----gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                         ..     +-.|+++.-.|+++...++..|.++..+|++++ ++.+|+++|+++|++      ++.+|+++..+|.||
T Consensus       128 ~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~-~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG  200 (431)
T TIGR01788       128 RMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPG-RYVIDPEQVVEAVDE------NTIGVVCILGTTYTG  200 (431)
T ss_pred             HHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCC-ceeeCHHHHHHHHhh------CCeEEEEEeCCCCCc
Confidence               01     236999999999999999999999999999863 457999999999987      788899999999999


Q ss_pred             cCCCHHHHHHHHHHHHHc------CCEEEEccCCCCC
Q 018147          285 QVLAEENQRAIVDFCKKE------GLVLLADEVYQEN  315 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~------~i~lI~DeaY~~~  315 (360)
                      .+-|   +++|+++|+++      |+|+++|.+|+.+
T Consensus       201 ~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~  234 (431)
T TIGR01788       201 EYED---VKALNDALDEYNAKTGWDIPIHVDAASGGF  234 (431)
T ss_pred             ccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence            9999   89999999999      9999999999964

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.33  E-value=2.7e-11  Score=117.93  Aligned_cols=142  Identities=15%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~  244 (360)
                      ..+|.+.++++.    |    .+..+++++++.||.+++.++++ +||+|+++.+.|.    .+...+...|++++.+++
T Consensus        66 ~~~lE~~la~le----g----~~~av~~sSG~aAi~~al~all~-~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~  136 (384)
T PRK06434         66 VQAFEEKYAVLE----N----AEHALSFSSGMGAITSAILSLIK-KGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT  136 (384)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence            566666676665    3    35678888888999999999884 9999999887554    444667778999999988


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                      ++.+.+.++.        +      ++++|++.+|.|||+.+.+   +++|+++|++++  +++|.++..-. ...    
T Consensus       137 ~~~~~~~l~~--------~------~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~-~~~----  192 (384)
T PRK06434        137 DRLNSLDFDP--------S------NYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY-NQN----  192 (384)
T ss_pred             CChhheeecC--------C------CeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc-cCC----
Confidence            7543343321        1      6899999999999999876   999999999998  45699975422 111    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++     +.+   .|   ++++|.+|.++|
T Consensus       193 pl-----~~g---aD---ivv~S~tK~i~G  211 (384)
T PRK06434        193 PL-----DLG---AD---VVIHSATKYISG  211 (384)
T ss_pred             ch-----hcC---CC---EEEeecccccCC
Confidence            11     111   23   888999998875

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.32  E-value=1.7e-10  Score=103.66  Aligned_cols=161  Identities=17%  Similarity=0.167  Sum_probs=131.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      +..+.+.+++|+        ..|.+-+|+|+.++-+.++.+++. +||.|++....+....-+++.+|+++..+|-....
T Consensus        63 I~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~~-~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P  133 (382)
T COG1103          63 IKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALCK-EGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP  133 (382)
T ss_pred             HHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhcc-CCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence            567888899887        367899999999999999999995 99999999988877667889999999999988777


Q ss_pred             CcCCCHHHHHHHHHHHHhcC-CCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHH
Q 018147          249 GWGLETSEVKKQLEAAKAKG-ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (360)
Q Consensus       249 ~~~~d~~~L~~~i~~~~~~g-~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~  327 (360)
                      .|.++++...+.|++-.+++ ..+.+.++++|..--|...+   .++++++|+++|+.++...+|.--.     .+.|.+
T Consensus       134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~Gr-----mpvs~k  205 (382)
T COG1103         134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTVGR-----MPVSGK  205 (382)
T ss_pred             ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceeecc-----cccccc
Confidence            89999999999999877765 56778888898766666554   8999999999999999999997622     334433


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      ..    +   .|   ++++|--|+++..-
T Consensus       206 e~----g---~D---FiVgSGHKsmAAs~  224 (382)
T COG1103         206 EI----G---AD---FIVGSGHKSMAASA  224 (382)
T ss_pred             cc----C---CC---EEEecCccchhccC
Confidence            22    1   24   67899999876543

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=99.31  E-value=5e-12  Score=107.17  Aligned_cols=65  Identities=26%  Similarity=0.461  Sum_probs=60.5

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL  227 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~  227 (360)
                      .|++..|.++||+++|+|+.+++|  +.+++++|++|+|+++++..++..++ ++||.|++++|+|+.
T Consensus        87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYYAA  153 (153)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCCCC
Confidence            388899999999999999999988  67889999999999999999999999 599999999999963

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.30  E-value=1.1e-10  Score=116.53  Aligned_cols=215  Identities=14%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|.+.+++.+.+..........+     ..+.+..+|+.+.+..... ..+.++++++++
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-----~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGs  125 (451)
T PRK06918         52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVM-----MYEPYIELAEKLAALAPGS-FDKKVLFLNSGA  125 (451)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCcccccc-----ccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcH
Confidence            34456666554     223478899999988876431001111     1234555666665543211 115899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC-------------eEEEeecCC--CCCcCCC--------HH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLDE--ATGWGLE--------TS  255 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~--~~~~~~d--------~~  255 (360)
                      +|+..+++.... .....|+.....|.+........ +.             .+..+|...  ....++.        .+
T Consensus       126 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (451)
T PRK06918        126 EAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIE  205 (451)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHH
Confidence            999999886532 13456888888887665433322 21             011222110  0001111        12


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPT-GQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      .+++.+...  ...+..+.+|..|-+.. |.+++ .+.+++|.++|++||+++|+||+|.+|.+.+.  +.++..+    
T Consensus       206 ~~~~~~~~~--~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~--~~a~~~~----  277 (451)
T PRK06918        206 EFKNFFISE--VAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK--YFAIEHF----  277 (451)
T ss_pred             HHHHHHHhh--cCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc--eehhHhc----
Confidence            233333211  11123466667785554 55454 55599999999999999999999999877653  3333322    


Q ss_pred             CCCCCCceEEEEeccCcCccccccccC
Q 018147          334 GYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      . ..||     +.||||++++|+|+||
T Consensus       278 ~-v~pD-----i~t~sK~l~~G~pig~  298 (451)
T PRK06918        278 D-VVPD-----LITVSKSLGAGVPISG  298 (451)
T ss_pred             C-CCCC-----EEeeehhhcCCCccEE
Confidence            1 1255     4489999999999998

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.29  E-value=2.4e-11  Score=118.19  Aligned_cols=174  Identities=20%  Similarity=0.328  Sum_probs=117.1

Q ss_pred             CCCCCCCcC-cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQG-IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G-~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ......+.| +.+..+.+|+.+    |   ..+..++++|+|.++..++.+++. +||.|+++..+|-.....+...|++
T Consensus        58 lD~L~~p~G~I~eAe~~aA~~f----G---Ad~t~flvnGsT~g~~a~i~a~~~-~gd~VLv~RN~HkSv~~alil~ga~  129 (417)
T PF01276_consen   58 LDDLHDPEGIIKEAEELAARAF----G---ADKTFFLVNGSTSGNQAMIMALCR-PGDKVLVDRNCHKSVYNALILSGAI  129 (417)
T ss_dssp             CBBTTTTBTHHHHHHHHHHHHH----T---ESEEEEESSHHHHHHHHHHHHHTT-TTCEEEEETT--HHHHHHHHHHTEE
T ss_pred             cCcccCCccHHHHHHHHHHHhc----C---CCeEEEEecCchHHHHHHHHHhcC-CCCEEEEcCCcHHHHHHHHHHcCCe
Confidence            333334444 344455555554    4   234578899999999999999995 9999999999999999999999999


Q ss_pred             EEEeecCCCCCcC----CCH-----HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEc
Q 018147          239 LVPYYLDEATGWG----LET-----SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (360)
Q Consensus       239 ~~~v~~~~~~~~~----~d~-----~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~D  309 (360)
                      +++++.. .+.++    +++     +.+++++++.... +.+++++|++|+. -|.+.+   +++|+++|+++++.|++|
T Consensus       130 Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvD  203 (417)
T PF01276_consen  130 PVYIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVD  203 (417)
T ss_dssp             EEEEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE
T ss_pred             EEEecCC-ccccCCccCCChhhhhHHHHHHHHHhCccc-cCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEE
Confidence            9998765 33343    455     8888888763110 0144599999987 599988   999999999999999999


Q ss_pred             cCCCCCc-cCCCCCCCCHHHHHHhhCC-CCCCceEEEEeccCcCcc
Q 018147          310 EVYQENV-YVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       310 eaY~~~~-~~~~~~~~s~~~~~~~~~~-~~~~~~~i~~~S~SK~~~  353 (360)
                      |||+... |.      ++..-.-.++. ...+..+++++|.-|.++
T Consensus       204 EAhGah~~F~------~lp~~a~~~gad~~~~~~~~vvqS~HKtL~  243 (417)
T PF01276_consen  204 EAHGAHFGFH------PLPRSALALGADRPNDPGIIVVQSTHKTLP  243 (417)
T ss_dssp             -TT-TTGGCS------GGGTTCSSTTSS-CTSBEEEEEEEHHHHSS
T ss_pred             ccccccccCC------CCccchhhccCccccccceeeeechhhccc
Confidence            9998732 22      11111111211 123446799999999765

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.29  E-value=1.4e-10  Score=114.77  Aligned_cols=201  Identities=13%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~V  218 (360)
                      -+|++++++.+.+.+...   ..+...  ..+.+..+|+.+.+... ....+.+++++++++|+..+++.... ....+|
T Consensus        50 ~~p~v~~a~~~ql~~~~~---~~~~~~--~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~i  123 (420)
T TIGR00700        50 SHPRVVDAVRTQVAEFTH---TCFMVT--PYEGYVALAEKLNRIAP-GSGPKKSVFFNSGAEAVENAVKIARSYTGRPGV  123 (420)
T ss_pred             CCHHHHHHHHHHHHhccC---cccccc--CChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcE
Confidence            378899999988876431   112111  12233445555544321 11235799999999999998886532 133568


Q ss_pred             EEcCCCchHHHHHHHHc-CC-------------eEEEeecCC--CC-------CcCCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          219 LCPIPQYPLYSASIALH-GG-------------TLVPYYLDE--AT-------GWGLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~--~~-------~~~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      +...-.|.+........ +.             .+..++...  ..       .+.-+++.+++.+... ....++.+|+
T Consensus       124 i~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi  202 (420)
T TIGR00700       124 VAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALV  202 (420)
T ss_pred             EEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEE
Confidence            88888887654332222 11             111122110  00       0001244555555311 1122454554


Q ss_pred             EecC-CCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          276 VINP-GNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       276 l~~P-~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                       ..| +.-+|.+++.+ .+++|.++|++||+++|+||+|.+|.+.+.  +.++...     +..+|     +-+|||+++
T Consensus       203 -~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~--~~a~~~~-----~~~pD-----i~~lsK~l~  269 (420)
T TIGR00700       203 -IEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA--MFACEHE-----GPEPD-----LITTAKSLA  269 (420)
T ss_pred             -ECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch--hHHHhhc-----CCCCC-----EEEeecccc
Confidence             455 55678876555 499999999999999999999999877653  2222211     11255     345999999


Q ss_pred             ccccccC
Q 018147          354 FHFFSKW  360 (360)
Q Consensus       354 g~~RvGw  360 (360)
                      +|+|+||
T Consensus       270 ~G~pig~  276 (420)
T TIGR00700       270 DGLPLSG  276 (420)
T ss_pred             CCcceEE
Confidence            9999998

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.29  E-value=3.8e-11  Score=112.58  Aligned_cols=156  Identities=19%  Similarity=0.278  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      .+++++++.+...     +...|+...-..++.+.+++.+    |    .+..+++.+++.+-.++++.++. |++.|++
T Consensus         8 ~~~m~~a~~~a~~-----gd~~Yg~D~~~~~l~~~i~~l~----g----~e~a~f~~sGT~An~~al~~~~~-~~~~vi~   73 (290)
T PF01212_consen    8 TPAMLEAMAAANV-----GDDAYGEDPTTARLEERIAELF----G----KEAALFVPSGTMANQLALRAHLR-PGESVIC   73 (290)
T ss_dssp             -HHEEHHHHHTTS-----B-CCTTSSHHHHHHHHHHHHHH----T----SSEEEEESSHHHHHHHHHHHHHH-TTEEEEE
T ss_pred             CHHHHHHHHcccc-----CCcccCCChhHHHHHHHHHHHc----C----CCEEEEeCCCChHHHHHHHHHHh-cCCceec
Confidence            5556666633221     2336888887888888888887    3    45667888999999999999995 9999999


Q ss_pred             cCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHH
Q 018147          221 PIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIV  296 (360)
Q Consensus       221 ~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~  296 (360)
                      ..+.|....   ......|.+++.++..+.+  .+++++|++.+........++++|+|.+|+|-. |.+++.+++++|.
T Consensus        74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G--~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   74 ADTAHIHFDETGAIEELSGAKLIPLPSDDDG--KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             ETTEHHHHSSTTHHHHHTTCEEEEEBECTGT--BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             cccceeeeeccchhhHhcCcEEEECCCcccC--CCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            999876432   2335589999999887632  789999999998854333468899999999864 8899999999999


Q ss_pred             HHHHHcCCEEEEccCC
Q 018147          297 DFCKKEGLVLLADEVY  312 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY  312 (360)
                      ++|+++|+.++.|.+=
T Consensus       152 ~~a~~~gl~lhmDGAR  167 (290)
T PF01212_consen  152 ELAREHGLPLHMDGAR  167 (290)
T ss_dssp             HHHHHHT-EEEEEETT
T ss_pred             HHHHhCceEEEEehhh
Confidence            9999999999999874

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=2.3e-10  Score=113.20  Aligned_cols=201  Identities=13%  Similarity=0.093  Sum_probs=118.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~  217 (360)
                      --+|.+++++.+.+..... ....+.+    .+....+|+.+.+..... ..+.+++++++++|+..+++.... ....+
T Consensus        56 h~~p~v~~ai~~ql~~l~~-~~~~~~~----~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~e~AlklAr~~tgr~~  129 (425)
T PRK07495         56 HRHPRVIAAVKAQLDRFTH-TCHQVVP----YENYVRLAERLNALVPGD-FAKKTIFVTTGAEAVENAVKIARAATGRSA  129 (425)
T ss_pred             CCCHHHHHHHHHHHhhccC-cccCccC----CHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHhhCCCe
Confidence            3478899999988876431 0111111    233444556555543211 125899999999999999886532 13457


Q ss_pred             EEEcCCCchHHHHHHHHc-CC-------------eEEEeecCCCCCcCCC----HHHHHHHHHHHHhcCCCccEEEEe-c
Q 018147          218 ILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEATGWGLE----TSEVKKQLEAAKAKGITVRALVVI-N  278 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~d----~~~L~~~i~~~~~~g~~~k~iil~-~  278 (360)
                      |+...-.|.+........ |.             .++.+|..... .+.+    ++.+++.+... ..+.++.+|++. .
T Consensus       130 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv  207 (425)
T PRK07495        130 VIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPV  207 (425)
T ss_pred             EEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhc-cCCCceEEEEECCc
Confidence            888888887654322211 10             12233332111 1233    33445544321 011246555554 2


Q ss_pred             CCCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccc
Q 018147          279 PGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF  357 (360)
Q Consensus       279 P~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~R  357 (360)
                      .+| +| ...+.+.+++|.++|++||+++|+||+|.+|...+.  ...+...  +   ..||     +.+|||++++|++
T Consensus       208 ~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~a~~~~--g---v~pD-----i~tlsK~l~~G~p  274 (425)
T PRK07495        208 QGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK--LFAMEHH--E---VAAD-----LTTMAKGLAGGFP  274 (425)
T ss_pred             cCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC--ceeeccc--C---CCCC-----EEeehhhhcCCcc
Confidence            256 77 457899999999999999999999999998765553  2111111  0   1133     6889999999999


Q ss_pred             ccC
Q 018147          358 SKW  360 (360)
Q Consensus       358 vGw  360 (360)
                      +||
T Consensus       275 iga  277 (425)
T PRK07495        275 LAA  277 (425)
T ss_pred             ceE
Confidence            986

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.27  E-value=4.2e-11  Score=111.98  Aligned_cols=149  Identities=19%  Similarity=0.216  Sum_probs=113.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~  244 (360)
                      ...|.+.||.+-   .|.     --+.+++++.|+..++..++. +||.|+...--|.    .+...++..|.++.++.-
T Consensus        64 ~~vlE~RiAaLE---GG~-----aa~a~aSG~AA~~~ai~~la~-aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~  134 (426)
T COG2873          64 TDVLEERIAALE---GGV-----AALAVASGQAAITYAILNLAG-AGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP  134 (426)
T ss_pred             HHHHHHHHHHhh---cch-----hhhhhccchHHHHHHHHHhcc-CCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence            355666666553   121     234567789999999999995 9999998886555    456677889999999753


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                             .|++.++++|++      ++|+|++..-.||-+.+++   +++|+++|+++|+.+|+|.....-++-.     
T Consensus       135 -------~d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~r-----  193 (426)
T COG2873         135 -------DDPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLCR-----  193 (426)
T ss_pred             -------CCHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceecc-----
Confidence                   368999999998      8999999999999999998   9999999999999999999887632211     


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                      ++.     .+   -|   |+++|.||..+| |--+
T Consensus       194 P~~-----hG---AD---IVvHS~TK~igGhGt~i  217 (426)
T COG2873         194 PIE-----HG---AD---IVVHSATKYIGGHGTAI  217 (426)
T ss_pred             hhh-----cC---CC---EEEEeecccccCCcccc
Confidence            111     11   23   899999998876 4433

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.25  E-value=3.5e-10  Score=110.88  Aligned_cols=176  Identities=18%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH-HHHHHcCCeE
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS-ASIALHGGTL  239 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~  239 (360)
                      -.|..+....+|.+++++++    |    .+.++.|+.++.|+++++...+ ++||.|  +..+|.... ..+...|+.+
T Consensus        72 d~Yagd~s~~~LE~~vAe~l----G----~e~aV~v~sGTaAl~ll~~l~v-~pGd~V--p~n~~f~Tt~ahI~~~Ga~f  140 (460)
T PRK13237         72 EAYAGSRNFYHLEETVQEYY----G----FKHVVPTHQGRGAENLLSRIAI-KPGQYV--PGNMYFTTTRYHQELNGGIF  140 (460)
T ss_pred             hhhcCCCcHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHhCC-CCcCEE--CCccchHhhHHHHHhCCcEE
Confidence            35888878999999999998    3    4569999999999998766666 499965  555454443 4377788865


Q ss_pred             EEeecC--------CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          240 VPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       240 ~~v~~~--------~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      +-+..+        ...++.+|++.|+++|++..  ..+++++.+.+++|-. |+..|.+++++|.++|++||+.||+|.
T Consensus       141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da  218 (460)
T PRK13237        141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDA  218 (460)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence            555322        22357899999999997521  1256678888888988 799999999999999999999999999


Q ss_pred             CCCCC-c-cC----CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          311 VYQEN-V-YV----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       311 aY~~~-~-~~----~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      +...- . |-    ..-.-.++..++.++.. +.|   +...|++|.+.
T Consensus       219 Ara~gna~fI~~re~~y~~~~i~ei~~e~~s-~aD---~~t~S~~K~~~  263 (460)
T PRK13237        219 TRCVENAYFIKEREEGYQDKSIKEIVHEMFS-YAD---GCTMSGKKDCL  263 (460)
T ss_pred             cchhcChhhhcccccccCCCcHhHHhhhccC-cCc---EEEEeCCCCCC
Confidence            87531 1 10    10012345455555542 344   66778999764

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.25  E-value=2.4e-10  Score=113.06  Aligned_cols=214  Identities=17%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|++++++.+.+.+...   ..+...  ..+....+|+.+.+.... -..+.+++++++++
T Consensus        39 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~---~~~~~~--~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGse  112 (421)
T PRK06777         39 GREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTH---TAYQIV--PYASYVTLAERINALAPI-DGPAKTAFFTTGAE  112 (421)
T ss_pred             CCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccc---cccccc--CChHHHHHHHHHHHhCCC-CCCceEEEeCCcHH
Confidence            4455665444     223478899999988876431   112111  122334455555443210 12368999999999


Q ss_pred             HHHHHHHHHccC-CCCEEEEcCCCchHHHHHHHHc-CCe-------------EEEeecCCCCCcC----CCHHHHHHHHH
Q 018147          202 AVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEATGWG----LETSEVKKQLE  262 (360)
Q Consensus       202 al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~~-g~~-------------~~~v~~~~~~~~~----~d~~~L~~~i~  262 (360)
                      |+..+++....- ...+|+...-.|.+........ |..             +..++.... .++    -+++.+++.+.
T Consensus       113 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~  191 (421)
T PRK06777        113 AVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFK  191 (421)
T ss_pred             HHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHH
Confidence            999998865321 2356888888887665443322 210             111111110 011    12556666664


Q ss_pred             HHHhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCce
Q 018147          263 AAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS  341 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  341 (360)
                      ... ...++.+|++.-.++..|. +.+.+.+++|.++|++||+++|+||+|.++.+.+.  +.++...     +..+|  
T Consensus       192 ~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~--~~~~~~~-----~~~pD--  261 (421)
T PRK06777        192 ADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK--LFAMEYY-----DVKPD--  261 (421)
T ss_pred             hcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc--hhhhhhc-----CCCCC--
Confidence            210 1124555554433777785 57899999999999999999999999999766553  3222211     11255  


Q ss_pred             EEEEeccCcCccccccccC
Q 018147          342 LVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       342 ~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++   ++||++++|+|+||
T Consensus       262 iv---~~sK~l~~G~piga  277 (421)
T PRK06777        262 LI---TMAKSLGGGMPISA  277 (421)
T ss_pred             EE---eeehhhcCCCceEE
Confidence            22   79999999999997

>PLN02590 probable tyrosine decarboxylase

Probab=99.24  E-value=6.8e-10  Score=112.08  Aligned_cols=155  Identities=13%  Similarity=0.098  Sum_probs=121.3

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHHcc----------CCCCEEEEcCCC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIR----------SENDGILCPIPQ  224 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~I~~t~Ga~~al~~~~~~l~~----------~~gd~Vlv~~P~  224 (360)
                      ...|..+.+..++.+.+.+|+.+..|++-.     ...=++|+|++++...++.+...          .+.-.|++.+-+
T Consensus       159 ~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~a  238 (539)
T PLN02590        159 GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQT  238 (539)
T ss_pred             cCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCc
Confidence            345666667899999999999999987632     12356788888887666554321          022256677888


Q ss_pred             chHHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          225 YPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       225 y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      |.....++..+|.   +++.+|++..+++.+|++.|+++|++..++|..+-+|+.+-..-.||.+=+   +++|+++|++
T Consensus       239 H~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~  315 (539)
T PLN02590        239 HSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKK  315 (539)
T ss_pred             hHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHH
Confidence            9999999999987   588899887667899999999999987777766666666677778998866   9999999999


Q ss_pred             cCCEEEEccCCCCCcc
Q 018147          302 EGLVLLADEVYQENVY  317 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~~  317 (360)
                      ||+|+.+|.||+.+..
T Consensus       316 ~g~WlHVDaA~GG~al  331 (539)
T PLN02590        316 YGIWLHVDAAYAGNAC  331 (539)
T ss_pred             hCCeEEEecchhhhhh
Confidence            9999999999999653

>PLN02880 tyrosine decarboxylase

Probab=99.22  E-value=6.7e-10  Score=111.63  Aligned_cols=153  Identities=12%  Similarity=0.093  Sum_probs=119.9

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCC-----CCEEEcCChHHHHHHHHHHHcc----C------CCCEEEEcCCCch
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADP-----NDIFLTDGASPAVHMMMQLLIR----S------ENDGILCPIPQYP  226 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-----~~I~~t~Ga~~al~~~~~~l~~----~------~gd~Vlv~~P~y~  226 (360)
                      .|..+.+..++.+.+.+|+.+.+|++-..     ..-++|+|++++...++.+...    .      +.-.|++++-.|.
T Consensus       113 ~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~  192 (490)
T PLN02880        113 SWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS  192 (490)
T ss_pred             ccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH
Confidence            44455567899999999999998875321     2467788888887665544321    0      1124667888899


Q ss_pred             HHHHHHHHcCCe---EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          227 LYSASIALHGGT---LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       227 ~~~~~~~~~g~~---~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      ...+++..+|..   ++.+|.++++++.+|++.|+++|++..++|..+-+|+.+-....||.+-+   +++|+++|+++|
T Consensus       193 Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~  269 (490)
T PLN02880        193 ALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNG  269 (490)
T ss_pred             HHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcC
Confidence            999999999984   78889887666899999999999987777766666666677888999988   999999999999


Q ss_pred             CEEEEccCCCCCcc
Q 018147          304 LVLLADEVYQENVY  317 (360)
Q Consensus       304 i~lI~DeaY~~~~~  317 (360)
                      +|+++|.+|+....
T Consensus       270 iwlHVDaA~gg~~~  283 (490)
T PLN02880        270 MWFHVDAAYAGSAC  283 (490)
T ss_pred             CEEEEehhhHHHHH
Confidence            99999999999644

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.22  E-value=1.5e-09  Score=101.83  Aligned_cols=183  Identities=18%  Similarity=0.192  Sum_probs=112.9

Q ss_pred             HHHHHHHH-HHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccCCCCEE
Q 018147          143 DSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       143 ~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .|++++++ .+.+.......+|+...   .=|+.+-+-+.+-+|    .|.-++   .-++|+||..++..+++ |||++
T Consensus        28 KVL~Af~~~~vs~~hf~~tTGYGY~D---~GRd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~Lr-pGD~l   99 (403)
T PF06838_consen   28 KVLKAFQENRVSDSHFAGTTGYGYDD---IGRDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVLR-PGDEL   99 (403)
T ss_dssp             HHHHHHHHTT--GGGCS---TT-TT----HHHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH---TT-EE
T ss_pred             HHHHHHHHcCCChhhcCCCCcCCCCC---ccHHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcCC-CCCeE
Confidence            45666543 22222223466676643   235555555555555    444444   34689999999999996 99999


Q ss_pred             EEcC-CCchHHHHHH----------HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccC
Q 018147          219 LCPI-PQYPLYSASI----------ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQV  286 (360)
Q Consensus       219 lv~~-P~y~~~~~~~----------~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~  286 (360)
                      +... .-|.....++          +..|.+...+++.+++  .+|.+.+++++++      ++|+|+|. +-..-+=..
T Consensus       100 l~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~s  171 (403)
T PF06838_consen  100 LSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDG--TIDWEAIKKALKP------NTKMVLIQRSRGYSWRPS  171 (403)
T ss_dssp             EESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTS--SB-HHHHHHHHHT------TEEEEEEE-S-TTSSS--
T ss_pred             EEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCC--CcCHHHHHHhhcc------CceEEEEecCCCCCCCCC
Confidence            8654 3344444443          5568899999999875  8899999999997      89999998 546666667


Q ss_pred             CCHHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          287 LAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~--~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      ++.++++++++++++.  ++++++|++|++|+-..+  +       .+++   -|   ++.+|+-|..+||+
T Consensus       172 l~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E--P-------~~vG---AD---l~aGSLIKNpGGgi  228 (403)
T PF06838_consen  172 LTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE--P-------TEVG---AD---LMAGSLIKNPGGGI  228 (403)
T ss_dssp             --HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS---G-------GGGT----S---EEEEETTSGGGTTT
T ss_pred             CCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC--c-------cccc---hh---heeccceeCCCCCc
Confidence            8889999999999885  799999999999765443  1       2333   24   88999999988875

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.22  E-value=2.6e-10  Score=121.65  Aligned_cols=143  Identities=20%  Similarity=0.207  Sum_probs=117.6

Q ss_pred             CCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH----HHHHHHHHHHccCCCC----EEEEcCCCchHH
Q 018147          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS----PAVHMMMQLLIRSEND----GILCPIPQYPLY  228 (360)
Q Consensus       160 ~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~----~al~~~~~~l~~~~gd----~Vlv~~P~y~~~  228 (360)
                      .+.|.|   .+|+.++.+.+.+++.+..|.    ++|.++++++    +++.++++.+.+.+||    .|+++...|...
T Consensus       554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g~----~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn  629 (993)
T PLN02414        554 IHPFAPVDQAQGYQEMFEDLGDLLCEITGF----DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTN  629 (993)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHhCC----CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccC
Confidence            444555   457666666666676666563    8999999988    8999999999853488    899999999988


Q ss_pred             HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ...+...|.+++.+++++++  .+|+++|+++++++   ..++++|++++|+|-+|...+   +++|+++|+++|+++++
T Consensus       630 ~a~a~~~G~~vv~v~~d~~G--~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~v  701 (993)
T PLN02414        630 PASAAMCGMKIVVVGTDAKG--NINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYM  701 (993)
T ss_pred             HHHHHHCCCEEEEeccCCCC--CcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEE
Confidence            88888899999999997553  79999999999742   016889999999999998866   99999999999999999


Q ss_pred             ccCCCC
Q 018147          309 DEVYQE  314 (360)
Q Consensus       309 DeaY~~  314 (360)
                      |.++..
T Consensus       702 DgAq~~  707 (993)
T PLN02414        702 DGANMN  707 (993)
T ss_pred             EecCHH
Confidence            999843

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.21  E-value=4.4e-10  Score=111.02  Aligned_cols=183  Identities=13%  Similarity=0.083  Sum_probs=114.2

Q ss_pred             CCHHHHHHHHHHH-HcCCC--CCCCCCCCCcCcHHHHH----HHHHHHHhhcCCCCCCCCE-EEcCChHHHHHHHHHHHc
Q 018147          140 FSADSIERAWQIL-DQIPG--RATGAYSHSQGIKGLRD----TIAAGIEARDGFPADPNDI-FLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       140 ~p~~v~~~~~~~l-~~~~~--~~~~~Y~~~~G~~~lr~----~ia~~l~~~~g~~~~~~~I-~~t~Ga~~al~~~~~~l~  211 (360)
                      ++|.+++++...+ .....  .+..-|....-..+|.+    .+++++    |    .+.. +.+++++.|+..++.+++
T Consensus        40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g----~~~alv~~~SG~~A~~~~l~al~  111 (416)
T PRK13034         40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----G----CDYANVQPHSGSQANGAVYLALL  111 (416)
T ss_pred             CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----C----CCceEEecCCcHHHHHHHHHHhc
Confidence            4888998887775 43321  00111111122445555    555554    4    2345 456788999999999998


Q ss_pred             cCCCCEEEEcCCCchH-HHHHHHH--cCCeE--EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          212 RSENDGILCPIPQYPL-YSASIAL--HGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~-~~~~~~~--~g~~~--~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      . +||+|+++...|.. +...++.  .+...  ..+.++.. ++.+|++++++.++..     ++|+|++.++.  +|..
T Consensus       112 ~-~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~-----~~klVi~~~~~--~g~~  182 (416)
T PRK13034        112 K-PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEH-----KPKLIIAGFSA--YPRE  182 (416)
T ss_pred             C-CCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhc-----CCeEEEECCCc--cccc
Confidence            4 99999999998865 2211111  12211  23444333 3578999999988652     57888776655  3555


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .+   +.+|.++|+++|+++|+|+++.--++.......++           .+ --+++.|++|.++|
T Consensus       183 ~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~-----------~~-~Di~~~s~~K~l~g  235 (416)
T PRK13034        183 LD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF-----------PH-AHVVTTTTHKTLRG  235 (416)
T ss_pred             cC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC-----------CC-ceEEEEeCcccCCC
Confidence            55   88889999999999999999876554332111111           11 13888999999853

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.18  E-value=3.8e-09  Score=105.17  Aligned_cols=216  Identities=13%  Similarity=0.033  Sum_probs=122.5

Q ss_pred             CCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHH
Q 018147          128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-I~~t~Ga~~  201 (360)
                      ..+||+..+     -.--+|++++++.+.+..... ....|.    ..+.+..+|+.+.+.......... +++++++++
T Consensus        39 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~----~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsE  113 (442)
T TIGR00709        39 KEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLP-LHTLDL----TTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGAD  113 (442)
T ss_pred             CEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccC-cccccc----CcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHH
Confidence            345555444     223478899999888876321 011111    124555666666654321101134 455689999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCCC--CCcC----CCHHHH----
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEA--TGWG----LETSEV----  257 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~----~d~~~L----  257 (360)
                      |+..+++.... ....+|+...-.|.+....+... |.            .+..++....  ..|.    .+.+.+    
T Consensus       114 A~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (442)
T TIGR00709       114 AVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYF  193 (442)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHH
Confidence            99999887542 13457888888888765443332 20            1222222111  0011    112222    


Q ss_pred             HHHHHHHHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          258 KKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       258 ~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      ++.+........++.++++... +|+...+.+++.+++|.++|++||+++|.||+|.+|...+.  +..+...  +   .
T Consensus       194 ~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~~~--g---v  266 (442)
T TIGR00709       194 ENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT--MFAFEHA--G---I  266 (442)
T ss_pred             HHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc--hhHHHHc--C---C
Confidence            2333211111124666666644 45544557899999999999999999999999999766553  3332221  1   2


Q ss_pred             CCCceEEEEeccCcCccccccccC
Q 018147          337 EKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .||  +++   +||++++|+++||
T Consensus       267 ~PD--iv~---~gK~l~~G~Piga  285 (442)
T TIGR00709       267 EPD--FVV---MSKAVGGGLPLAV  285 (442)
T ss_pred             CCc--EEE---EcccccCCcccEE
Confidence            366  233   8999999999986

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.18  E-value=1.8e-09  Score=106.55  Aligned_cols=217  Identities=12%  Similarity=0.041  Sum_probs=126.0

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCCEEE-cCCh
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGA  199 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~-t~Ga  199 (360)
                      ...+||+..+     -.--+|.+++++.+.+.+...  ....   ....+.+..+|+.+.+....+. ..+.+++ ++++
T Consensus        34 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~---~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG  108 (412)
T TIGR02407        34 GKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI--IHSL---DMATEAKREFLETFNEIILKPRGLDYKVQFPGPTG  108 (412)
T ss_pred             CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc--eecc---ccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCc
Confidence            4455666444     224488899999988875322  1111   1123445556666655321011 1124655 5889


Q ss_pred             HHHHHHHHHHHccC-CCCEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCCCCCc-CCCHHHHHHHHHHH
Q 018147          200 SPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEATGW-GLETSEVKKQLEAA  264 (360)
Q Consensus       200 ~~al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~~~~~-~~d~~~L~~~i~~~  264 (360)
                      ++|+..+++....- ...+|+...-.|.+....+... |.            .++.+|....... .-+++.+++.+.+.
T Consensus       109 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~  188 (412)
T TIGR02407       109 TNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDS  188 (412)
T ss_pred             hHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhc
Confidence            99999998876421 3467888888887665433321 21            1222332110000 01366777777542


Q ss_pred             HhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEE
Q 018147          265 KAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (360)
Q Consensus       265 ~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i  343 (360)
                      .....++.+|++.--+++.|. +.+.+.+++|.++|+++|+++|+||++.+|...+.  ...+.     ...-.||    
T Consensus       189 ~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~~-----~~~v~PD----  257 (412)
T TIGR02407       189 SSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT--FFSFE-----PAGIEPD----  257 (412)
T ss_pred             cCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hHHhc-----ccCCCCC----
Confidence            111124555554433788888 56888999999999999999999999998643332  11111     0111266    


Q ss_pred             EEeccCcCccc-cccccC
Q 018147          344 SFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       344 ~~~S~SK~~~g-~~RvGw  360 (360)
                       +.++||++++ |+|+||
T Consensus       258 -i~~~~K~lg~~G~piga  274 (412)
T TIGR02407       258 -IVCLSKSISGYGLPLAL  274 (412)
T ss_pred             -EEEechhccCCccceeE
Confidence             2358999998 999987

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.18  E-value=1.5e-09  Score=104.36  Aligned_cols=161  Identities=15%  Similarity=0.215  Sum_probs=122.4

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      +..+|...++++++++.+..       .+...+  -...+-+.+.+.++..++.. +.+-++++.+++.++..++..++.
T Consensus         9 l~PGP~~v~~~V~~am~~~~-------~~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~   78 (383)
T COG0075           9 LTPGPVPVPPRVLLAMARPM-------VGHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVE   78 (383)
T ss_pred             eeCCCCCCCHHHHHHhcCCC-------CCCCCH--HHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccC
Confidence            44456677888887764321       122222  13445555555555555522 224466778899999999999995


Q ss_pred             CCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          213 SENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                       |||+|++......  .+..+++.+|++++.+......  .+|++++++++++    +++.++|.++|.-.+||...+  
T Consensus        79 -pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~--~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp--  149 (383)
T COG0075          79 -PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE--AVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP--  149 (383)
T ss_pred             -CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc--
Confidence             9999999987776  4678999999999999887553  7899999999984    346889999999999999988  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                       +++|+++|++||.++|+|.+-+
T Consensus       150 -l~~I~~~~k~~g~l~iVDaVsS  171 (383)
T COG0075         150 -LKEIAKAAKEHGALLIVDAVSS  171 (383)
T ss_pred             -HHHHHHHHHHcCCEEEEEeccc
Confidence             9999999999999999998865

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.17  E-value=3e-09  Score=105.36  Aligned_cols=216  Identities=14%  Similarity=0.086  Sum_probs=123.6

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEE-cCCh
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFL-TDGA  199 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~-t~Ga  199 (360)
                      ...+||+..+     -.--+|.+.+++.+.+.....  ....   ......+..+++.+.+....+...+ .+++ ++++
T Consensus        38 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~---~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG  112 (425)
T PRK09264         38 GKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGI--THGL---DMHTTAKREFLETFEETILKPRGLDYKVQFTGPTG  112 (425)
T ss_pred             CCEeeecccchhhccCCCCCHHHHHHHHHHHHhccc--cccc---ccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence            4455665444     223478899999888875322  1111   0112345555665554321111112 5656 5799


Q ss_pred             HHHHHHHHHHHccC-CCCEEEEcCCCchHHHHHHHHc-C------------CeEEEeecCCCCCcC-CCHHHHHHHHHHH
Q 018147          200 SPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-G------------GTLVPYYLDEATGWG-LETSEVKKQLEAA  264 (360)
Q Consensus       200 ~~al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~-~d~~~L~~~i~~~  264 (360)
                      ++|+..+++....- ...+|+.....|.+........ |            ..+..+|........ -|++++++.+...
T Consensus       113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~  192 (425)
T PRK09264        113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS  192 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence            99999998876421 3457888888887654332221 1            012333322110001 2567788877643


Q ss_pred             HhcCCCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceE
Q 018147          265 KAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (360)
Q Consensus       265 ~~~g~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  342 (360)
                      .....++.+| |..| ..-.|. +.+.+.+++|.++|++||+++|+||++.++...+.  ...+..  .+   -.||   
T Consensus       193 ~~~~~~~aav-i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~--~~~~~~--~~---v~PD---  261 (425)
T PRK09264        193 SSGVDLPAAV-IVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT--FFSFER--AG---ITPD---  261 (425)
T ss_pred             cCCCCceEEE-EEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH--HHHHhh--cC---CCCC---
Confidence            1111134444 4555 444565 56888999999999999999999999998644442  111111  11   1256   


Q ss_pred             EEEeccCcCccc-cccccC
Q 018147          343 VSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       343 i~~~S~SK~~~g-~~RvGw  360 (360)
                        +-+|||++++ |+++||
T Consensus       262 --i~t~~K~l~~~G~piga  278 (425)
T PRK09264        262 --IVTLSKSISGYGLPMAL  278 (425)
T ss_pred             --EEEeccccCCCccceEE
Confidence              2367999998 999885

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.17  E-value=1.2e-09  Score=108.10  Aligned_cols=198  Identities=14%  Similarity=0.135  Sum_probs=119.6

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-------
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------  212 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-------  212 (360)
                      -+|++.+++.+.+..........|.     .+.+..+|+.+.+...  -..+.+++++++++|+..+++....       
T Consensus        59 ~~p~v~~ai~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A~klar~~~~~~~~  131 (423)
T PRK05964         59 NHPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTP--GGLDHVFFSDSGSVAVEVALKMALQYWRNRGE  131 (423)
T ss_pred             CCHHHHHHHHHHHhhCCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            3788999999888764320111222     2345566666655432  1236899999999999999886531       


Q ss_pred             CCCCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          213 SENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      ....+|+...-.|.+...........             +..++....+....+++.+++.+.+.   +.++.+|++ .|
T Consensus       132 ~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~-Ep  207 (423)
T PRK05964        132 PGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIV-EP  207 (423)
T ss_pred             CCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEE-ec
Confidence            12357888888887654333222111             12222221100011267777777531   124555555 45


Q ss_pred             --CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc-
Q 018147          280 --GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH-  355 (360)
Q Consensus       280 --~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~-  355 (360)
                        ++..|... +.+.+++|.++|++||+++|+||++.++...+.  ...+ .    .....||     +-++||++++| 
T Consensus       208 ~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~--~~a~-~----~~~v~pD-----i~~~~K~l~gG~  275 (423)
T PRK05964        208 LVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT--LFAC-E----QAGVSPD-----IMCLSKGLTGGY  275 (423)
T ss_pred             ccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--hhHH-H----hcCCCCC-----eeeeehhhhcCc
Confidence              66778766 889999999999999999999999988655442  1111 1    1111255     24678999887 


Q ss_pred             ccccC
Q 018147          356 FFSKW  360 (360)
Q Consensus       356 ~RvGw  360 (360)
                      +++|+
T Consensus       276 ~p~~a  280 (423)
T PRK05964        276 LPLAA  280 (423)
T ss_pred             ccceE
Confidence            77763

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.17  E-value=1.7e-09  Score=107.45  Aligned_cols=213  Identities=13%  Similarity=0.110  Sum_probs=122.8

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+     -.--+|.+++++.+.++.........|.     .+....+++.+.+...  -..+.+++++++++
T Consensus        42 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~SGse  114 (433)
T PRK08117         42 GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIY-----YESILKLAEELAEITP--GGLDCFFFSNSGAE  114 (433)
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCcHHH
Confidence            4456666554     2235788999999888764321111121     2344455555555431  12467999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHH-HcC--C-----------eEEEeecCCCC--CcC--------CCHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHG--G-----------TLVPYYLDEAT--GWG--------LETSE  256 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~-~~g--~-----------~~~~v~~~~~~--~~~--------~d~~~  256 (360)
                      |...+++.... .....|+...-.|.+...... ..+  .           .+..+|.....  .++        -+++.
T Consensus       115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (433)
T PRK08117        115 AIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRD  194 (433)
T ss_pred             HHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHH
Confidence            99999886421 123578887777776543321 111  0           01222221100  001        14455


Q ss_pred             HHHHHHHHHhcCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          257 VKKQLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      +++.++.... +.++ +.+|..| ..-.|.+ .+.+.+++|.++|++||+++|+||+|.+|...+.  .... .   .. 
T Consensus       195 l~~~~~~~~~-~~~~-aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~--~~~~-~---~~-  265 (433)
T PRK08117        195 LESLFKHQVT-PEEV-AAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE--WFAA-Q---TF-  265 (433)
T ss_pred             HHHHHHhccC-CCcE-EEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc--chhH-h---hc-
Confidence            6665543111 1244 4455555 4445665 4678899999999999999999999999655543  1111 1   11 


Q ss_pred             CCCCCceEEEEeccCcCccccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +..+|     +.+|||++++|+++||
T Consensus       266 gv~pD-----i~t~sK~lg~G~piga  286 (433)
T PRK08117        266 GVVPD-----IMTIAKGIASGLPLSA  286 (433)
T ss_pred             CCCCC-----EeehhhhccCCCccee
Confidence            11144     4699999999999986

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.17  E-value=6.5e-10  Score=106.16  Aligned_cols=206  Identities=13%  Similarity=0.097  Sum_probs=132.1

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..++||+..+     -.--+|.+++++.+.++.... ....|..     +.+.++|+.+.+..+   ..+.|+++++++|
T Consensus        41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h-~sn~~~~-----~~~~~la~~L~~~s~---~~d~vff~NSGaE  111 (404)
T COG4992          41 GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH-VSNLFYN-----EPQAELAEKLVELSP---FADRVFFCNSGAE  111 (404)
T ss_pred             CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh-cccccCC-----hHHHHHHHHHHhhCc---cccEEEEcCCcHH
Confidence            4556676655     335689999999888776532 1222322     344555555544322   3789999999999


Q ss_pred             HHHHHHHHHcc--C-C-CCEEEEcCCCchHHHHHHHHcCCeEE----EeecCCCCCcC--CCHHHHHHHHHHHHhcCCCc
Q 018147          202 AVHMMMQLLIR--S-E-NDGILCPIPQYPLYSASIALHGGTLV----PYYLDEATGWG--LETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       202 al~~~~~~l~~--~-~-gd~Vlv~~P~y~~~~~~~~~~g~~~~----~v~~~~~~~~~--~d~~~L~~~i~~~~~~g~~~  271 (360)
                      |+..++.....  . + ..+|+.....|.+-.-..-..+.+..    +-|+.+.-.+.  -|++++++++++      ++
T Consensus       112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~------~t  185 (404)
T COG4992         112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE------DT  185 (404)
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc------Ce
Confidence            99999987643  1 1 23677777776643222111222211    01222211111  189999999988      78


Q ss_pred             cEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCc
Q 018147          272 RALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK  350 (360)
Q Consensus       272 k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK  350 (360)
                      .+|++---+--.|++.+.+ -++++-++|++||+++|.||+..++...+.  +..+..+     .-.||     +-++.|
T Consensus       186 aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk--~fA~e~~-----gV~PD-----I~tlaK  253 (404)
T COG4992         186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK--LFAYEHY-----GVEPD-----ILTLAK  253 (404)
T ss_pred             EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch--HHHHHHh-----CCCCC-----EEEeec
Confidence            7777765577778777654 599999999999999999999999766664  2222111     22377     457889


Q ss_pred             Ccccccccc
Q 018147          351 GRYFHFFSK  359 (360)
Q Consensus       351 ~~~g~~RvG  359 (360)
                      +++||.-||
T Consensus       254 ~LgGG~Pig  262 (404)
T COG4992         254 ALGGGFPIG  262 (404)
T ss_pred             cccCCccce
Confidence            999997665

>PRK15029 arginine decarboxylase; Provisional

Probab=99.16  E-value=9.9e-10  Score=114.25  Aligned_cols=150  Identities=17%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCC----C-----HHHHHHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL----E-----TSEVKKQL  261 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~----d-----~~~L~~~i  261 (360)
                      ...++++|+|.++..++.+++. +||.|+++..+|-+..+.+.+.|+++++++... +.|++    +     ++.+++++
T Consensus       222 ~t~FlvNGST~gn~a~i~a~~~-~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~-~~~Gi~~~i~~~~~~~e~i~~~l  299 (755)
T PRK15029        222 RSWSVVVGTSGSNRTIMQACMT-DNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSR-NRYGIIGPIYPQEMQPETLQKKI  299 (755)
T ss_pred             cEEEEeCChhHHHHHHHHHhcC-CCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCCccCCCccccCHHHHHHHH
Confidence            4688999999999999999995 999999999999999999999999999986443 23333    4     88999988


Q ss_pred             HHHH----hcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC-ccCCCCCCC--CHHHHHH-h-
Q 018147          262 EAAK----AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKFH--SFKKVSR-S-  332 (360)
Q Consensus       262 ~~~~----~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~-~~~~~~~~~--s~~~~~~-~-  332 (360)
                      ++..    +++.++++++|++|+. -|.+.+   +++|+++|+++++.|++||||+.. .|.+.  ++  +.....+ . 
T Consensus       300 ~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~~--~p~~sa~~~~~~~~  373 (755)
T PRK15029        300 SESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPI--YADHYAMRGEPGDH  373 (755)
T ss_pred             HhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccccccccCcc--cccccccccccccc
Confidence            6531    1234566999999987 599988   899999999999999999999773 33332  22  1110000 0 


Q ss_pred             hCCCCCCceEEEEeccCcCcc
Q 018147          333 MGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       333 ~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      .+   .+  +++++|.-|.++
T Consensus       374 ~G---ad--~~vvqStHKtL~  389 (755)
T PRK15029        374 NG---PT--VFATHSTHKLLN  389 (755)
T ss_pred             CC---Cc--eEEEEchhhccc
Confidence            11   22  589999999765

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.16  E-value=2.1e-09  Score=107.01  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=125.1

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--++++++++.+.+.+..   .  +....+..+.+..+|+.+.+..... ..+.++++++++
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~--~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGs  127 (443)
T PRK06058         54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT---H--TCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGA  127 (443)
T ss_pred             CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc---C--ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcH
Confidence            35567777555     23447889999998887632   1  1111223456667777776654311 124788888889


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC-------------eEEEeecC--CCC--CcCCCH-HHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLD--EAT--GWGLET-SEVKKQ  260 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~--~~~--~~~~d~-~~L~~~  260 (360)
                      +|+..+++.... ...++|+.....|.++....... +.             .+..++..  ...  .+..+. +.+++.
T Consensus       128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (443)
T PRK06058        128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARA  207 (443)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHH
Confidence            999999884321 13478999999998776443322 11             11112211  000  001111 222222


Q ss_pred             HHHHHh--cCCCccEEEEecCCCCcccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          261 LEAAKA--KGITVRALVVINPGNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       261 i~~~~~--~g~~~k~iil~~P~NPTG~~~--~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      ++...+  ...++. .+|..|-+..|.++  +.+.+++|.++|++||+++|.||++.+|...+.  ....     +..+.
T Consensus       208 ~~~l~~~~~~~~iA-avi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~--~fa~-----~~~gv  279 (443)
T PRK06058        208 ITVIEKQVGADNLA-AVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA--WFAC-----EHEGI  279 (443)
T ss_pred             HHHHHHhhCCCceE-EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh--hhHH-----HhcCC
Confidence            221111  112454 45577866665433  477899999999999999999999999765543  2111     11112


Q ss_pred             CCCceEEEEeccCcCccccccccC
Q 018147          337 EKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .||  ++   +++|++++|+++|+
T Consensus       280 ~PD--iv---~~gK~l~~G~Pi~a  298 (443)
T PRK06058        280 VPD--LI---TTAKGIAGGLPLSA  298 (443)
T ss_pred             CCC--EE---EEcccccCCCccEE
Confidence            366  23   44899999999885

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.15  E-value=4.4e-10  Score=105.31  Aligned_cols=162  Identities=14%  Similarity=0.148  Sum_probs=113.0

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      ..+..+++++++.+.-..    ....|+...-...+.+.+++.    +|    .+.++++.++|++..+++...++ ||+
T Consensus         9 ~~g~~~~m~eam~~a~~~----~~~~YG~D~~~~~~e~~~ae~----~g----~~a~~Fv~sGT~aN~lal~~~~~-~~~   75 (342)
T COG2008           9 VAGPTPEMREALAAANAV----GDDVYGEDPTTNALEQRIAEL----FG----KEAALFVPSGTQANQLALAAHCQ-PGE   75 (342)
T ss_pred             cCCCCHHHHHHHHhcccc----CCCCCCCCHHHHHHHHHHHHH----hC----CceEEEecCccHHHHHHHHHhcC-CCC
Confidence            456677788776654321    355677665444444444444    44    27899999999999999999995 999


Q ss_pred             EEEEcCCCchHHHH--HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHH
Q 018147          217 GILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      .|++..-.|.....  .++.++ ....++..+..+-.+++++++..+...--....+.++++.|.+|--|.++|.+++++
T Consensus        76 ~vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~  154 (342)
T COG2008          76 SVICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEA  154 (342)
T ss_pred             eEEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHH
Confidence            99999877653321  233332 122333333333489999999988751102235667777777778899999999999


Q ss_pred             HHHHHHHcCCEEEEccCC
Q 018147          295 IVDFCKKEGLVLLADEVY  312 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY  312 (360)
                      |.++|+++|+.|..|.+=
T Consensus       155 i~~~~k~~~l~LHmDGAR  172 (342)
T COG2008         155 ISAVCKEHGLPLHMDGAR  172 (342)
T ss_pred             HHHHHHHhCCceeechHH
Confidence            999999999999999864

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.15  E-value=1.7e-09  Score=108.04  Aligned_cols=185  Identities=14%  Similarity=0.095  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHHHHcCC--CCCCCCCCC-CcCcHH----HHHHHHHHHHhhcCCCCCCCCEEEc---CChHHHHHHHHH
Q 018147          139 LFSADSIERAWQILDQIP--GRATGAYSH-SQGIKG----LRDTIAAGIEARDGFPADPNDIFLT---DGASPAVHMMMQ  208 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~--~~~~~~Y~~-~~G~~~----lr~~ia~~l~~~~g~~~~~~~I~~t---~Ga~~al~~~~~  208 (360)
                      .+++.+++.+...+.+..  ......|.. ..-...    .|+.+++++    |  ++++++.++   +|++++...++.
T Consensus        45 ~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf----~--a~~~~~~~~~~~~sgt~an~~v~~  118 (452)
T PTZ00094         45 FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF----G--LDPEEWGVNVQPYSGSPANFAVYT  118 (452)
T ss_pred             cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCcccceeecCCCchHHHHHHHHH
Confidence            357888888777765532  111112221 111222    233444444    4  466777666   788999999999


Q ss_pred             HHccCCCCEEEEcCCCchHHHHHHHH----------cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          209 LLIRSENDGILCPIPQYPLYSASIAL----------HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~~~~~~~~~----------~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      ++++ +||+|++....+..+......          .+.++..++++.+  ..+|+++|++.+++.     +++++++.+
T Consensus       119 al~~-~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~-----~~~lvi~~~  190 (452)
T PTZ00094        119 ALLQ-PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAF-----RPKLIIAGA  190 (452)
T ss_pred             HhcC-CCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHh-----CCCEEEEeC
Confidence            9984 999999988777655433211          1133445555543  479999999999753     567666543


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        +.+|...+   +++|.++|+++|+++++|+++.--.........++    .     .-|   +++.|..|.+.|
T Consensus       191 --s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~----~-----~~D---~l~~S~hK~l~G  249 (452)
T PTZ00094        191 --SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF----P-----YAD---VVTTTTHKSLRG  249 (452)
T ss_pred             --CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC----C-----CCc---EEEcCCccCCCC
Confidence              34899988   88888999999999999999976544332101111    0     123   778999997753

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.14  E-value=3e-09  Score=104.32  Aligned_cols=189  Identities=13%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----CCC
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SEN  215 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~~g  215 (360)
                      +|.+++++.+.+.....    .+.  ....++...+|+++.+..    ..+.+++++++++|+..+++....     .+|
T Consensus        54 ~p~v~~a~~~q~~~~~~----~~~--~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~  123 (395)
T PRK03715         54 NPGMVEALAAQAEKLIN----PSP--AFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANEGAIKLARKWGRKHKNG  123 (395)
T ss_pred             CHHHHHHHHHHHHhccc----ccc--cccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            78899999888775421    111  123567778888886542    246899999999999999988741     123


Q ss_pred             -CEEEEcCCCchHHHH-HHHHcCCeEE---EeecCCCCCc----CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          216 -DGILCPIPQYPLYSA-SIALHGGTLV---PYYLDEATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       216 -d~Vlv~~P~y~~~~~-~~~~~g~~~~---~v~~~~~~~~----~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                       ..|+.....|..... .+...|....   ..|...  ++    ..|++.+++.+.+      ++.+|++.-.++..|.+
T Consensus       124 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~l~~------~~aavi~Epv~~~gG~~  195 (395)
T PRK03715        124 AYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--GFPKAELNDIASVEKLITD------KTVAVMLEPVQGEGGVI  195 (395)
T ss_pred             CcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCC--CceeeCCchHHHHHHHcCC------CceEEEEeCCcCCCCCc
Confidence             568888888876543 3333332211   111111  11    1368888887754      56666555435555655


Q ss_pred             C-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          287 L-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       287 ~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      . +.+.+++|.++|++||+++|+||++.++.-.+.  ...+..  .++   .||     +-+|||++++|.-+|
T Consensus       196 ~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~--~~a~~~--~gv---~PD-----i~t~gK~lg~G~p~~  257 (395)
T PRK03715        196 PATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT--LFAYEL--SGI---EPD-----IMTLGKGIGGGVPLA  257 (395)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc--hhhHhh--cCC---CCc-----eeeehhhhhCCcceE
Confidence            4 678899999999999999999999998533332  111111  111   256     357899999876554

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.11  E-value=2.8e-09  Score=105.85  Aligned_cols=165  Identities=13%  Similarity=0.162  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC----C-
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----E-  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~----~-  214 (360)
                      .++.+.+.+...+..... .+..|+   +..++.+.+..++.+.++.+ ..-.=.+|.|+|+++.+.+.+..+.    . 
T Consensus        74 ~~~~a~~~~~~~~~~nl~-d~~~~p---~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~  148 (460)
T COG0076          74 VPPVAAELLVSALNKNLG-DPDESP---AAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRAL  148 (460)
T ss_pred             CHHHHHHHHHHHHhhcCC-CcccCh---hHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhh
Confidence            355555556666655432 344444   57899999999999998865 3334588999999998777664320    1 


Q ss_pred             --CC------EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          215 --ND------GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       215 --gd------~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                        +.      .|+++.-.|..+...++.+|.....++.+.. ++.+|++++++++++....|    +|+.+-+..+||.+
T Consensus       149 ~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~i  223 (460)
T COG0076         149 AESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSI  223 (460)
T ss_pred             hcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCcc
Confidence              11      6999999999999999999999999999875 57999999999999842111    37777888899987


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      =+   +++|.++|+++++|+++|.||++++.
T Consensus       224 Dd---i~~ia~ia~~~~i~lHVDAA~GG~~~  251 (460)
T COG0076         224 DD---IEELADIAEEYGIWLHVDAAFGGFLL  251 (460)
T ss_pred             CC---HHHHHHHHHHcCCcEEEEccccceee
Confidence            55   99999999999999999999999765

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.11  E-value=2e-09  Score=104.34  Aligned_cols=189  Identities=13%  Similarity=0.104  Sum_probs=117.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~V  218 (360)
                      -+|++++++.+.+.+.... ...|..     +.+..+++.+.+..+    .+.+++++++++|+..+++......| ++|
T Consensus        41 ~~p~v~~ai~~ql~~~~~~-~~~~~~-----~~~~~la~~l~~~~~----~~~v~~~~SGseA~e~Alklar~~~gr~~I  110 (364)
T PRK04013         41 NHPEWVEEMSEQLEKLVVA-GPMFEH-----EEKEEMLEELSKWVN----YEYVYMGNSGTEAVEAALKFARLYTGRKEI  110 (364)
T ss_pred             CCHHHHHHHHHHHHhcCCc-cCCcCC-----HHHHHHHHHHHhhcC----CCEEEEeCchHHHHHHHHHHHHHHhCCCEE
Confidence            3688999999888875321 112332     233444444443322    36899999999999999997753345 889


Q ss_pred             EEcCCCchHHHHHHHHc-C-------CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC-CCH
Q 018147          219 LCPIPQYPLYSASIALH-G-------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAE  289 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~-g-------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~  289 (360)
                      +...-+|.+........ +       .......... -.| .|.+.+++.+.+      ++.+|++...+...|.. .+.
T Consensus       111 i~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~-~~~-~d~~~l~~~i~~------~~aAvivEpi~g~gG~~~~~~  182 (364)
T PRK04013        111 IAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKH-IPF-NDVEAAKEAITK------ETAAVIFEPIQGEGGIVPAKE  182 (364)
T ss_pred             EEECCccccCchhhccCCCCcccccCCCCCCCCcEE-ecC-CCHHHHHHHhcC------CcEEEEEcCCcCCCCCcCCCH
Confidence            99998888765333221 1       1100000000 011 267888887764      68777766555444554 456


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      +-+++|.++|++||+++|+||+..++ ..+.  +..+..     ....||     +-+++|++++|+-+|
T Consensus       183 ~yl~~lr~lc~~~gillI~DEv~tG~-RtG~--~~a~~~-----~gv~PD-----iv~~gK~lggG~P~~  239 (364)
T PRK04013        183 EFVKTLRDLTEDVGALLIADEVQSGL-RTGK--FLAIEH-----YKVEPD-----IVTMGKGIGNGVPVS  239 (364)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhcC-CCCc--hhHHHh-----cCCCCC-----EEEecccccCCceeE
Confidence            78999999999999999999999986 4442  222211     112367     345599999886543

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.10  E-value=7.3e-09  Score=104.64  Aligned_cols=150  Identities=11%  Similarity=0.066  Sum_probs=112.4

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCC---------CCC--CCEEEcCChHHHHHHHHHHHcc---C-------------
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFP---------ADP--NDIFLTDGASPAVHMMMQLLIR---S-------------  213 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~---------~~~--~~I~~t~Ga~~al~~~~~~l~~---~-------------  213 (360)
                      ..|..+....++.+.+.+|+.+..+..         -.+  ..-++|+|+|+|...++.+...   .             
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            345555567899999999998876411         011  2347788888888776655321   0             


Q ss_pred             ---------CCCEEEEcCCCchHHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          214 ---------ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       214 ---------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                               ++..|+++.-.|.....+++..|.   +++.+|++++  +.+|+++|+++|++..+++.++-+|+-+..++
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~--g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt  276 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDAN--NRIDVDALRDKCAELAEQNIKPLAIVGVAGTT  276 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCC--CcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence                     134688888999999999999987   7889999764  58999999999987655554443344445577


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .||.+-+   +++|+++|+++|+|+++|.+|+..
T Consensus       277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~  307 (522)
T TIGR03799       277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGA  307 (522)
T ss_pred             CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhH
Confidence            8999988   999999999999999999999874

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.08  E-value=7.1e-09  Score=100.83  Aligned_cols=167  Identities=18%  Similarity=0.172  Sum_probs=120.2

Q ss_pred             CHHHHHHH-HHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHHcc--
Q 018147          141 SADSIERA-WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIR--  212 (360)
Q Consensus       141 p~~v~~~~-~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~I~~t~Ga~~al~~~~~~l~~--  212 (360)
                      +..++..+ ...++..    ...|.......++.+.+.+|+.+..|++-+     ...=++|+|+++++..++.+...  
T Consensus        52 ~~~i~~~~l~~~~n~n----~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~  127 (373)
T PF00282_consen   52 PASILADLLASALNQN----GFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERA  127 (373)
T ss_dssp             HHHHHHHHHHHHHT-B----TTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccc----ccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHH
Confidence            44454443 3444432    334555556789999999999999997721     23468889999998777655421  


Q ss_pred             -----CCC-----C-EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          213 -----SEN-----D-GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       213 -----~~g-----d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                           ..|     . .|++.+-.|.....++..+|..++.+|++++  +.+|+++|++++++..++|..+-+|+.+-...
T Consensus       128 ~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~--~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt  205 (373)
T PF00282_consen  128 LPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDED--GRMDIEALEKALEKDIANGKTPFAVVATAGTT  205 (373)
T ss_dssp             HHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTT--SSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-T
T ss_pred             hhhhhhcccccccccccccccccccHHHHhcceeeeEEEEecCCcc--hhhhHHHhhhhhcccccccccceeeeccCCCc
Confidence                 012     2 4667777899999999999999999999984  58999999999998777764454566667788


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      .||.+   |++++|+++|+++++|+.+|.+|++..
T Consensus       206 ~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~  237 (373)
T PF00282_consen  206 NTGAI---DPLEEIADICEKYNIWLHVDAAYGGSA  237 (373)
T ss_dssp             TTSBB----SHHHHHHHHHHCT-EEEEEETTGGGG
T ss_pred             ccccc---cCHHHHhhhccccceeeeecccccccc
Confidence            89988   559999999999999999999999933

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02263 serine decarboxylase

Probab=99.06  E-value=2e-08  Score=99.39  Aligned_cols=142  Identities=8%  Similarity=-0.083  Sum_probs=113.1

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~  246 (360)
                      +..++.+.+.+|+.+.+|.+-+.-.=++|+|+|++...++.+... .+...|+++.-.|....++++.+|.+++.+|.++
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~  209 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLV  209 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence            468899999999999888642222347899999999887776542 1334788999999999999999999999999875


Q ss_pred             CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCC-----EEEEccCCCCCcc
Q 018147          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL-----VLLADEVYQENVY  317 (360)
Q Consensus       247 ~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i-----~lI~DeaY~~~~~  317 (360)
                      +  +.+|+++|+++|.+..   .++-+|+.+-+..++|.+=+   +++|.++|+++|+     |+.+|.+|++++.
T Consensus       210 ~--g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l  277 (470)
T PLN02263        210 S--GEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMM  277 (470)
T ss_pred             C--CcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHh
Confidence            4  6899999999997621   12445556677889999866   9999999999997     9999999988654

>PRK06541 hypothetical protein; Provisional

Probab=99.05  E-value=9.8e-09  Score=102.58  Aligned_cols=212  Identities=17%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+++++.+.+..........|.     .+.+..+|+.+.+...  ...+.+++++++++
T Consensus        51 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGse  123 (460)
T PRK06541         51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYA-----HPPAIELAERLAALAP--GDLNRVFFTTGGSE  123 (460)
T ss_pred             CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEcCCcHH
Confidence            3445555443     2233788999999888764320111222     2334445555554322  22368999999999


Q ss_pred             HHHHHHHHHcc-----C--CCCEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCCCC---CcCCC-----
Q 018147          202 AVHMMMQLLIR-----S--ENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEAT---GWGLE-----  253 (360)
Q Consensus       202 al~~~~~~l~~-----~--~gd~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~~~---~~~~d-----  253 (360)
                      |+..+++....     +  ...+|+...-.|.+........ |.            .+..+|....-   .|+-+     
T Consensus       124 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  203 (460)
T PRK06541        124 AVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFG  203 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHH
Confidence            99998886532     1  1367888887777654332221 11            11222211100   01122     


Q ss_pred             ---HHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          254 ---TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       254 ---~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                         ++.+++.++..   +++..+.+|..| +++.|.+.+ .+.+++|.++|+++|+++|+||+|.+|.-.+.  ...+..
T Consensus       204 ~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~--~~a~~~  278 (460)
T PRK06541        204 RWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE--MFGCER  278 (460)
T ss_pred             HHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--hhhhhh
Confidence               24555555421   223456777778 889998865 78899999999999999999999988632221  111110


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCccccc-cccC
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFHF-FSKW  360 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~-RvGw  360 (360)
                        .+   -.||  ++   +|||++++|. ++|+
T Consensus       279 --~g---v~PD--iv---t~gK~l~~G~~piga  301 (460)
T PRK06541        279 --FG---YVPD--II---TCAKGITSGYSPLGA  301 (460)
T ss_pred             --cC---CCCC--EE---EecccccCCccceeE
Confidence              11   1256  22   5899999986 7774

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.05  E-value=7.6e-09  Score=106.83  Aligned_cols=153  Identities=16%  Similarity=0.194  Sum_probs=109.1

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH-HHHcCCeEEEeecCCCCCcCC----CHHH-----HHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTLVPYYLDEATGWGL----ETSE-----VKKQ  260 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~----d~~~-----L~~~  260 (360)
                      .-.++++|+|.++..++.+++. +||.|++...+|-+..+. +.+.|+++++++... +.|++    +.+.     ++++
T Consensus       191 ~tyFlvNGTS~gn~a~i~a~~~-~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~~  268 (720)
T PRK13578        191 KTYFVLNGTSASNKVVTNALLT-PGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR-NPFGFIGGIDAHCFDEEYLREQ  268 (720)
T ss_pred             ceEEEeCChhHHHHHHHHHhcC-CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc-cccCCcCCCChHHccHHHHHHH
Confidence            4578899999999999999995 999999999999998884 899999999987654 33543    5544     8888


Q ss_pred             HHHH-Hh--cC-CCccEEEEecCCCCcccCCCHHHHHHHHHH-HHHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhC
Q 018147          261 LEAA-KA--KG-ITVRALVVINPGNPTGQVLAEENQRAIVDF-CKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       261 i~~~-~~--~g-~~~k~iil~~P~NPTG~~~~~~~l~~i~~l-a~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~  334 (360)
                      |++. ..  +. +..|+++|++|+. -|.+++   +++|+++ ++.++ .|++||||.... |.+.  ...+....-+++
T Consensus       269 i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~--~~~~p~~al~~G  341 (720)
T PRK13578        269 IREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPM--MADCSPLLLELN  341 (720)
T ss_pred             HHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcc--cccCChhhhhcC
Confidence            8654 11  11 2258999999986 599998   7888887 57777 999999998742 2221  001111111233


Q ss_pred             CCCCCceEEEEeccCcCccc
Q 018147          335 YGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ...|  -+++++|.-|.+++
T Consensus       342 aD~p--~i~v~QStHKtL~a  359 (720)
T PRK13578        342 ENDP--GIFVTQSVHKQQAG  359 (720)
T ss_pred             CCCC--CeEEEEChhhcchh
Confidence            3223  36899999997653

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.04  E-value=1e-09  Score=106.16  Aligned_cols=162  Identities=13%  Similarity=0.098  Sum_probs=107.9

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHS-------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAV  203 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~-------~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~G-a~~al  203 (360)
                      +|+.+|...|+.|++++.+.+.+..+.+...|...       .-+.+.|+.+++++    |. -++++|++|+| +|+++
T Consensus         2 ~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~----~~-~~~~~vvf~~gs~T~a~   76 (355)
T cd00611           2 NFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELL----NI-PDNYKVLFLQGGATGQF   76 (355)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CC-CCCceEEEEcCCchHHH
Confidence            46677888899999999887754322123334333       22456677777766    32 24678999988 99999


Q ss_pred             HHHHHHHcc--CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCC-HHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          204 HMMMQLLIR--SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE-TSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       204 ~~~~~~l~~--~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d-~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +.++..+..  ++||.|++ .+....+...++..|.+++.++.++++.|. + ++..+..+++      ++++|.+++-.
T Consensus        77 ~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~------~~~lV~~~h~~  148 (355)
T cd00611          77 AAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKYT-KIPDVETWDLAP------DAAYVHYCSNE  148 (355)
T ss_pred             HHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCCC-CCCCHhhcCCCC------CCCEEEEeCCc
Confidence            999999974  24454443 233233444778889999998876443331 2 2222222333      79999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |.||..++        ++++.+|+++++|.+..-
T Consensus       149 t~tG~~~~--------~i~~~~g~~~~VDa~qs~  174 (355)
T cd00611         149 TIHGVEFD--------EVPDTGGVPLVADMSSNI  174 (355)
T ss_pred             ccccEEcc--------eecccCCCeEEEEccccc
Confidence            99999743        344559999999998775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=98.99  E-value=3.3e-08  Score=98.44  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=120.9

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+++++.+.+...... ...+.    ..+....+++.+.+.... ...+.|++++++++
T Consensus        41 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~-~~~~~----~~~~~~~lae~L~~~~p~-~~~~~v~f~~SGse  114 (445)
T PRK08593         41 GKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TPAYM----YHEPLVRLAKKLCELAPG-DFEKRVTFGLSGSD  114 (445)
T ss_pred             CCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCc-ccccc----CCHHHHHHHHHHHHhCCC-CCCCEEEECCchHH
Confidence            4455666443     2234788999999888764320 11111    123444556666554321 11257999999999


Q ss_pred             HHHHHHHHHccC-CCCEEEEcCCCchHHHHHH-HHcCC-------------eEEEeecCCC--CCcC-CCH-------HH
Q 018147          202 AVHMMMQLLIRS-ENDGILCPIPQYPLYSASI-ALHGG-------------TLVPYYLDEA--TGWG-LET-------SE  256 (360)
Q Consensus       202 al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~-~~~g~-------------~~~~v~~~~~--~~~~-~d~-------~~  256 (360)
                      |+..+++....- ....|+...-.|.+..... ...+.             .+..+|....  ..+. .+.       ++
T Consensus       115 A~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  194 (445)
T PRK08593        115 ANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAP  194 (445)
T ss_pred             HHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHH
Confidence            999999864321 2356787777777654322 22221             1222322111  0011 111       23


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +++.+.... ...++.+|++.-.....|.+ .+.+.+++|.++|++||+++|+||+|.+|...+.  ...+..    . .
T Consensus       195 ~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~--~~a~~~----~-g  266 (445)
T PRK08593        195 LKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK--WSSISH----F-N  266 (445)
T ss_pred             HHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--HHHHHh----c-C
Confidence            333332110 01246555555446666776 6788899999999999999999999998644432  111111    1 1


Q ss_pred             CCCCceEEEEeccCcCccccccccC
Q 018147          336 GEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      -.||     +-++||++++|+++||
T Consensus       267 v~pD-----i~t~gK~l~~G~p~ga  286 (445)
T PRK08593        267 ITPD-----LMSFGKSLAGGMPMSA  286 (445)
T ss_pred             CCCC-----EeeecccccCCcccEE
Confidence            1256     3378999999998885

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.95  E-value=5.8e-08  Score=96.42  Aligned_cols=213  Identities=15%  Similarity=0.096  Sum_probs=124.5

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|.+++++.+.+.....  ...|..    .+.+..+|+.+.+...  -..+.++++++++
T Consensus        73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~--~~~~~~----~~~~~~lAe~L~~~~p--~~~~~v~f~~SGs  144 (442)
T TIGR03372        73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPL--HSQELL----DPLRALLAKTLAALTP--GKLKYSFFCNSGT  144 (442)
T ss_pred             CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCC--cccccC----CHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence            34556776554     334578899999998877542  223332    2344555555554322  1225789999999


Q ss_pred             HHHHHHHHHHccC----CCCEEEEcCCCchHHHHHHHHcCCeEE----EeecCCCCC--cCCCHHHHHHHHHHHHhcCCC
Q 018147          201 PAVHMMMQLLIRS----ENDGILCPIPQYPLYSASIALHGGTLV----PYYLDEATG--WGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       201 ~al~~~~~~l~~~----~gd~Vlv~~P~y~~~~~~~~~~g~~~~----~v~~~~~~~--~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      +|...+++....-    ....|+...-.|.+..........+..    ..|+.+.-.  --.|.+.+++.++.....+.+
T Consensus       145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~  224 (442)
T TIGR03372       145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDD  224 (442)
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCc
Confidence            9999998865321    235788888888766543333221110    111111000  012677888777543222334


Q ss_pred             ccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc
Q 018147          271 VRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~  348 (360)
                      +.+|+ ..| ..--|.+. +++-++++.++|++||+++|+||++.+|.-.+.  ...+...  +   -.||   |  -++
T Consensus       225 vAavI-vEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~e~~--g---v~PD---i--vt~  291 (442)
T TIGR03372       225 VAAII-LEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK--MFACEHE--G---VQPD---I--LCL  291 (442)
T ss_pred             EEEEE-EeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc--chhhhhc--C---CCCC---e--eee
Confidence            54555 445 44456655 567799999999999999999999988533332  2221111  1   1266   2  248


Q ss_pred             CcCcccc-cccc
Q 018147          349 SKGRYFH-FFSK  359 (360)
Q Consensus       349 SK~~~g~-~RvG  359 (360)
                      +|++++| .-+|
T Consensus       292 gK~lg~G~~Pig  303 (442)
T TIGR03372       292 AKALGGGVMPIG  303 (442)
T ss_pred             hhhhcCCcccce
Confidence            9999888 3443

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.94  E-value=2.1e-08  Score=103.45  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=107.8

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCC----C-----HHHHHHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL----E-----TSEVKKQL  261 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~----d-----~~~L~~~i  261 (360)
                      ...++++|+|.++..++.+++. +||.|++...+|-+..+.+.+.|+++++++... +.|++    +     .+.+++++
T Consensus       212 ~tyfvvNGTS~~n~av~~a~~~-~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~i  289 (714)
T PRK15400        212 RSYMVTNGTSTANKIVGMYSAP-AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTR-NAYGILGGIPQSEFQHATIAKRV  289 (714)
T ss_pred             cEEEEeCchHHHHHHHHHHhcC-CCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCCccCCCccccCHHHHHHHH
Confidence            4578899999999999999994 999999999999999999999999999987554 34443    4     78888888


Q ss_pred             HHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCCc
Q 018147          262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDI  340 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~~  340 (360)
                      ++... .+++++++|++|+. -|.+++   +++|+++|..++  |++||||.... |.+.-+..+..   . .+...++ 
T Consensus       290 ~~~p~-ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam---~-~ga~~~~-  357 (714)
T PRK15400        290 KETPN-ATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM---S-GGRVEGK-  357 (714)
T ss_pred             HhCcc-ccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh---h-cCCCCCC-
Confidence            65321 11334789999965 699998   778888887777  68999998742 32210111111   1 1111113 


Q ss_pred             eEEEEeccCcCccc
Q 018147          341 SLVSFQSVSKGRYF  354 (360)
Q Consensus       341 ~~i~~~S~SK~~~g  354 (360)
                      -+++++|.-|.+++
T Consensus       358 ~i~vtQStHKtL~a  371 (714)
T PRK15400        358 VIYETQSTHKLLAA  371 (714)
T ss_pred             ceEEEEchhhcccc
Confidence            36899999997654

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.93  E-value=6.7e-08  Score=94.79  Aligned_cols=215  Identities=15%  Similarity=0.157  Sum_probs=130.3

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCCh
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGA  199 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga  199 (360)
                      +...+||+.++     -.--+|.+++++.+.+..... ....|...    +...++|+.+.+..  +- ..+.+++++++
T Consensus        54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h-~~~~~~~~----e~~v~~ae~L~~~~--p~~~~~~~~f~~sG  126 (447)
T COG0160          54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNH-THTRDLYY----EPYVELAEKLTALA--PGSGLKKVFFGNSG  126 (447)
T ss_pred             CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhc-ccCCcccc----hhHHHHHHHHHHhC--CcccCCeEEecCCc
Confidence            45667787764     445699999999998887542 12333332    33444444444422  22 35679999999


Q ss_pred             HHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHH-HHcC-------------CeEEEeecC--CCCCcCCC--------H
Q 018147          200 SPAVHMMMQLLIR-SENDGILCPIPQYPLYSASI-ALHG-------------GTLVPYYLD--EATGWGLE--------T  254 (360)
Q Consensus       200 ~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~-~~~g-------------~~~~~v~~~--~~~~~~~d--------~  254 (360)
                      ++|+..+++.... .....|+...-.|.+..... ..-|             ..+..+|..  ..+.|..+        .
T Consensus       127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~  206 (447)
T COG0160         127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL  206 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence            9999999987532 13467888887777543322 2211             113333332  22222222        2


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~-~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      +.++..+........++.++++---+.-.|.+.+. +-++++.++|++||+++|+||+..++.-.+.  +..+...  + 
T Consensus       207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~--~fa~E~~--g-  281 (447)
T COG0160         207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK--MFAFEHF--G-  281 (447)
T ss_pred             HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--chhhhhc--C-
Confidence            33444343332223345455544447777776654 5699999999999999999999999776663  5554432  1 


Q ss_pred             CCCCCCceEEEEeccCcCcccccccc
Q 018147          334 GYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                        -.||     +=++||++++|+-+|
T Consensus       282 --v~PD-----ivt~aK~ig~G~Pl~  300 (447)
T COG0160         282 --VEPD-----IVTLAKSLGGGLPLS  300 (447)
T ss_pred             --CCCC-----EEEecccccCCCcee
Confidence              1367     456899999987554

>PLN02724 Molybdenum cofactor sulfurase

Probab=98.93  E-value=6.2e-08  Score=103.25  Aligned_cols=140  Identities=14%  Similarity=0.140  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEee
Q 018147          169 IKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYY  243 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~--~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~  243 (360)
                      +.+.|+.+|+++      +++++  +|++|+|+|+|+++++..+...+||+|++..-.|+....   .++..|+++..++
T Consensus        80 ~e~aR~~ia~~l------ga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~  153 (805)
T PLN02724         80 IESARQQVLEYF------NAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVD  153 (805)
T ss_pred             HHHHHHHHHHHh------CCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEecc
Confidence            567778888877      34454  589999999999999998843589999998877765443   3445699999988


Q ss_pred             cCCCC------CcCCCH--HHHHHHHHH----HHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc-----CCEE
Q 018147          244 LDEAT------GWGLET--SEVKKQLEA----AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-----GLVL  306 (360)
Q Consensus       244 ~~~~~------~~~~d~--~~L~~~i~~----~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~-----~i~l  306 (360)
                      ++.+.      .-.++.  +.|++.++.    ....+.++++|.+++-+|-||.++|.+.+.++.+.++++     ++++
T Consensus       154 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v  233 (805)
T PLN02724        154 IEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMV  233 (805)
T ss_pred             chhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEE
Confidence            76211      112332  556655421    001123578999999999999999955433333322222     3579


Q ss_pred             EEccCCCC
Q 018147          307 LADEVYQE  314 (360)
Q Consensus       307 I~DeaY~~  314 (360)
                      ++|.+..-
T Consensus       234 ~vDaaQ~~  241 (805)
T PLN02724        234 LLDAAKGC  241 (805)
T ss_pred             Eeehhhhc
Confidence            99988654

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.89  E-value=4.8e-08  Score=100.87  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=105.9

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcC----CCH-----HHHHHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG----LET-----SEVKKQL  261 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~----~d~-----~~L~~~i  261 (360)
                      .-.++++|+|.++..++.+++. +||.|++...+|-+..+.+.+.|+++++++... +.|+    ++.     +.+++++
T Consensus       212 ~tyfvvNGTS~~n~av~~a~~~-~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~i  289 (713)
T PRK15399        212 QSYIVTNGTSTSNKIVGMYAAP-AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEKV  289 (713)
T ss_pred             cEEEEeCChHHHHHHHHHHhcC-CCCEEEeecccHHHHHHHHHHcCCeeEEecccc-cccCCcCCCChhhccHHHHHHHH
Confidence            4578899999999999999995 999999999999999999999999999987543 2344    345     8888888


Q ss_pred             HHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEE-EEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCC
Q 018147          262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL-LADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~l-I~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      ++... .+++++++|++|+. -|.+++   +++|++.|   |+.+ ++||||.... |.+.-+..+...   ..  ..+|
T Consensus       290 ~~~p~-~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~---~~--~~aD  356 (713)
T PRK15399        290 AATTQ-AQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS---GE--RVPG  356 (713)
T ss_pred             HhCCC-cCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh---CC--CCCC
Confidence            75321 12457899999965 699998   67777777   5655 6999998732 222101111111   10  0135


Q ss_pred             ceEEEEeccCcCccc
Q 018147          340 ISLVSFQSVSKGRYF  354 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g  354 (360)
                      .-+++++|.-|.+++
T Consensus       357 ~~i~~tQStHKtL~a  371 (713)
T PRK15399        357 KVIFETQSTHKMLAA  371 (713)
T ss_pred             eeeeeeeehhccccc
Confidence            446779999997654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.89  E-value=9.8e-08  Score=95.65  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCC---CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccC
Q 018147          140 FSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~  213 (360)
                      .++.+++++...+.+....+   ..-|+-..-+.++.+...+...+.++  ...+.+++   ..+++.|...++.+|++ 
T Consensus        46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~~-  122 (475)
T PLN03226         46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALLQ-  122 (475)
T ss_pred             CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhCC-
Confidence            47778888877773322111   12233233333443322233333343  33444433   25567788888888885 


Q ss_pred             CCCEEEEcCC---CchHHHHHHH---HcCCe----EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          214 ENDGILCPIP---QYPLYSASIA---LHGGT----LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       214 ~gd~Vlv~~P---~y~~~~~~~~---~~g~~----~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      |||+|+..+.   .|..+.....   ..+..    ++.+.++.+ +..+|+++|++.+.+.     ++++|++. .++ +
T Consensus       123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~-~g~iD~d~Le~~l~~~-----~pklIv~~-~S~-~  194 (475)
T PLN03226        123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDES-TGLIDYDKLEKKAMLF-----RPKLIIAG-ASA-Y  194 (475)
T ss_pred             CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCC-CCCcCHHHHHHHHhhc-----CCeEEEEe-cCc-C
Confidence            9999998552   3333222211   11222    124444543 3479999999998753     67766553 333 6


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      |...+   +++|.++|+++|.++++|+++.--+..... ..+..   .     +-|   +++.|++|++.
T Consensus       195 s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~-~~~p~---~-----~~D---iv~~t~hK~L~  249 (475)
T PLN03226        195 PRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQE-AASPF---E-----YCD---VVTTTTHKSLR  249 (475)
T ss_pred             CCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCC-CCCCC---C-----CCe---EEEecCccccc
Confidence            67776   778999999999999999998775554321 11110   1     123   77899999884

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.88  E-value=1.1e-07  Score=95.07  Aligned_cols=212  Identities=15%  Similarity=0.109  Sum_probs=124.1

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+     -.--+|++++++.+.+.....  ...|..    .+.+..+|+.+.+...  -..+.+++++++++
T Consensus        81 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~--~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~SGsE  152 (459)
T PRK11522         81 GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL--HSQELL----DPLRAMLAKTLAALTP--GKLKYSFFCNSGTE  152 (459)
T ss_pred             CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc--cccccC----CHHHHHHHHHHHHhCC--CCCCEEEEeCCchH
Confidence            4556776555     334478899999998876532  222222    3344555665554322  22368999999999


Q ss_pred             HHHHHHHHHccC---C-CCEEEEcCCCchHHHHHHHHc-CCeEEE---eecCCCCCc--CCCHHHHHHHHHHHHhcCCCc
Q 018147          202 AVHMMMQLLIRS---E-NDGILCPIPQYPLYSASIALH-GGTLVP---YYLDEATGW--GLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       202 al~~~~~~l~~~---~-gd~Vlv~~P~y~~~~~~~~~~-g~~~~~---v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      |+..+++....-   . ...|+...-.|.+........ |.....   .|+.+.-.+  -.|.+.+++.++.....+.++
T Consensus       153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i  232 (459)
T PRK11522        153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDV  232 (459)
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcE
Confidence            999998865321   1 236888888887765433322 211111   111111000  126788888886532223345


Q ss_pred             cEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC
Q 018147          272 RALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (360)
Q Consensus       272 k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S  349 (360)
                      .+|+ ..| ..-.|.+. +.+-++++.++|++||+++|+||++.+|.-.+.  ...+..  .+   ..||   |  -+|+
T Consensus       233 AavI-vEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~--~~a~e~--~g---v~PD---i--vt~g  299 (459)
T PRK11522        233 AAVI-LEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK--MFACEH--EN---VQPD---I--LCLA  299 (459)
T ss_pred             EEEE-EecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch--hhhhhc--cC---CCCC---E--EEec
Confidence            4444 445 44456654 566799999999999999999999987533332  111111  11   2266   2  2789


Q ss_pred             cCcccc-cccc
Q 018147          350 KGRYFH-FFSK  359 (360)
Q Consensus       350 K~~~g~-~RvG  359 (360)
                      |++++| +-+|
T Consensus       300 K~lggG~~Pig  310 (459)
T PRK11522        300 KALGGGVMPIG  310 (459)
T ss_pred             hhhhCCCccce
Confidence            999988 3443

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.88  E-value=1.5e-07  Score=93.63  Aligned_cols=215  Identities=11%  Similarity=0.105  Sum_probs=120.9

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+.+++.+.+..........|.     .+....+|+.+.+....+ ..+.+++++++++
T Consensus        53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsE  126 (441)
T PRK05769         53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY-----YEPAVELAERLVEIAPGG-FEKKVFFTNSGTE  126 (441)
T ss_pred             CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccC-----CHHHHHHHHHHHHhCCCC-CCCEEEECCchHH
Confidence            4456676555     2234788999999888764320111121     234556666665543210 1368999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC-------------eEEEeecCCC--CCcC-CC--------HH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEA--TGWG-LE--------TS  255 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~~--~~~~-~d--------~~  255 (360)
                      |+..+++.... ....+|+...-.|.+........ |.             .+..++....  ..|. -+        ++
T Consensus       127 A~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (441)
T PRK05769        127 SNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLD  206 (441)
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHH
Confidence            99999886532 13467888888887665432222 21             1222222110  0011 11        22


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          256 EVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      .+++.+-+....+.++.+ +|..| ..-.|.+. +.+.+++|.++|++||+++|+||++.++...+.  ...+..+  ++
T Consensus       207 ~le~~~~~~~~~~~~iaa-vi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~--~~a~~~~--gv  281 (441)
T PRK05769        207 FIEDYLFKKLVPPEEVAA-IIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK--MFAIEHF--GV  281 (441)
T ss_pred             HHHHHHHhhccCCCceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--eehhhcc--CC
Confidence            233322111001124544 44556 44456644 567899999999999999999999998655442  2222111  11


Q ss_pred             CCCCCCceEEEEeccCcCccccccccC
Q 018147          334 GYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                         .||  ++   +|||++++|.++|+
T Consensus       282 ---~pD--iv---t~~K~l~~G~p~ga  300 (441)
T PRK05769        282 ---EPD--II---TLAKAIAGGLPLGA  300 (441)
T ss_pred             ---CCC--EE---EEcccccCCcccEE
Confidence               256  23   58999999988874

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=98.88  E-value=3.3e-08  Score=89.96  Aligned_cols=199  Identities=14%  Similarity=0.123  Sum_probs=133.8

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      +..+++|+.|   ...-+|+++++..+++.+.+. +...-.-..|.....+.+...+.+.++    .|+.++.+.+-.|.
T Consensus        66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGa-GlssvrfIcGtq~iHk~LE~kiAqfh~----rED~ilypscfdAN  140 (417)
T KOG1359|consen   66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGA-GLSSVRFICGTQDIHKLLESKIAQFHG----REDTILYPSCFDAN  140 (417)
T ss_pred             ccceeeecccccccccCChHHHHHHHHHHHHhCC-CccceeEEecchHHHHHHHHHHHHHhC----CCceEEeccccccc
Confidence            4567888877   556789999999999888643 333333345666666666555555555    46666666677777


Q ss_pred             HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       204 ~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      ..++.+++. |.|.|+...-.+....+.++++.    .+       -.+|+-.++..+.++.+.  +.|+|+-...=.-.
T Consensus       141 ag~feail~-pedAvfSDeLNhASIIdGirLck----ry-------~h~dv~~l~~~l~~a~k~--r~klv~TDg~FSMD  206 (417)
T KOG1359|consen  141 AGAFEAILT-PEDAVFSDELNHASIIDGIRLCK----RY-------RHVDVFDLEHCLISACKM--RLKLVVTDGVFSMD  206 (417)
T ss_pred             hHHHHHhcC-hhhhhhccccccchhhhhhHHHh----hh-------ccchhHHHHHHHHHhhhh--eEEEEEecceeccC
Confidence            788888884 99999999888888888777765    11       145677777666543211  45555533333345


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      |-+.|   +++|.+++++||.++++||++..+.++...  ......+.-|    .++ .|+..+++|+++|
T Consensus       207 GdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tG--rGt~E~~~vm----~~v-diinsTLgKAlGg  267 (417)
T KOG1359|consen  207 GDIAP---LEEISQLAKKYGALLFIDECHATGFFGETG--RGTAEEFGVM----GDV-DIINSTLGKALGG  267 (417)
T ss_pred             CCccc---HHHHHHHHHhcCcEEEEeecccceeecCCC--CChHHHhCCC----Ccc-eehhhhhhhhhcC
Confidence            66666   999999999999999999999999887542  2222222222    232 4778999998764

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.86  E-value=2.6e-08  Score=97.19  Aligned_cols=161  Identities=12%  Similarity=0.022  Sum_probs=107.0

Q ss_pred             CCCccccCccCCCCCHH-HHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHH
Q 018147          127 HPSILDRSETQGLFSAD-SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVH  204 (360)
Q Consensus       127 ~p~~l~~~~~~~~~p~~-v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~-Ga~~al~  204 (360)
                      .|..+.|+.+|..+++. +++++.+.+....   .....-..-+.+.|+.+++++    |.+ ++++|+++. ++|.+++
T Consensus        10 ~~~~~~f~~Gp~~~~~~~v~~a~~~~~~~~~---hr~~~f~~~~~~~r~~l~~l~----~~~-~~~~v~~~~gs~T~~~~   81 (378)
T PRK03080         10 RPADPRFSSGPCKKRPGWQLEALADALLGRS---HRQKPVKALLKRVIEGTRELL----SLP-EGYEVGIVPGSDTGAWE   81 (378)
T ss_pred             CCCCCCcCCCCcCCChHHHHHHHHhhhcccC---cCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCchHHHHH
Confidence            35567788888889998 8888765433211   111111223455566666665    421 345788775 8999999


Q ss_pred             HHHHHHccCCCCEEEEcCCCchH-HHH-HHHHcCC-eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          205 MMMQLLIRSENDGILCPIPQYPL-YSA-SIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       205 ~~~~~l~~~~gd~Vlv~~P~y~~-~~~-~~~~~g~-~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      .++..++.++++.|++ .-.|+. +.. +.+.+|. ++..++.+..  ..+|+++++           .++.|.+++-.|
T Consensus        82 ~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g--~~~d~~~i~-----------~~~~V~~~h~~t  147 (378)
T PRK03080         82 MALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYG--SLPDLSAVD-----------FDRDVVFTWNGT  147 (378)
T ss_pred             HHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCC--CCCCHhhcC-----------CCCCEEEEecCC
Confidence            9999997412455555 445543 333 2356788 8888876543  356766532           245688899999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .||..++   +++|++  +++|+++|+|.+..-
T Consensus       148 ~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~  175 (378)
T PRK03080        148 TTGVRVP---VARWIG--ADREGLTICDATSAA  175 (378)
T ss_pred             ccceecc---chhhcc--ccCCCeEEEeccccc
Confidence            9999999   777777  788999999988765

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.85  E-value=3.1e-07  Score=93.96  Aligned_cols=166  Identities=16%  Similarity=0.172  Sum_probs=120.1

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC---C--
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---E--  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~---~--  214 (360)
                      .++.++..+...+-+.   ....|..+.+...+.+.+.+++.+..|++-  ..=.+|+|+|+|...++....+.   |  
T Consensus        95 ~~paila~~~a~~~N~---n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a  169 (608)
T TIGR03811        95 LMPAILAYNYAMLWNG---NNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFA  169 (608)
T ss_pred             CHHHHHHHHHHHHhCC---CCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccch
Confidence            4455555444433332   244555566778999999999999999753  33446788887776554443210   0  


Q ss_pred             ----------------------------------------------C------CEEEEcCCCchHHHHHHHHcCC---eE
Q 018147          215 ----------------------------------------------N------DGILCPIPQYPLYSASIALHGG---TL  239 (360)
Q Consensus       215 ----------------------------------------------g------d~Vlv~~P~y~~~~~~~~~~g~---~~  239 (360)
                                                                    |      -.|+++.-.|..+..++..+|.   .+
T Consensus       170 ~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~v  249 (608)
T TIGR03811       170 MKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQV  249 (608)
T ss_pred             hhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccE
Confidence                                                          0      0578888889999999999998   58


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH---HHcCC--EEEEccCCCC
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC---KKEGL--VLLADEVYQE  314 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la---~~~~i--~lI~DeaY~~  314 (360)
                      +.+|++++  +.+|++.|++.|++..++|..+-+|+.+-....+|.+=+   +++|+++|   +++|+  |+.+|.||++
T Consensus       250 v~VpvD~~--~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG  324 (608)
T TIGR03811       250 IPVPVDSN--YRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGG  324 (608)
T ss_pred             EEeecCCC--CcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccc
Confidence            89998765  699999999999987777766666777777888999977   55555555   77898  6999999999


Q ss_pred             C
Q 018147          315 N  315 (360)
Q Consensus       315 ~  315 (360)
                      +
T Consensus       325 ~  325 (608)
T TIGR03811       325 Y  325 (608)
T ss_pred             h
Confidence            5

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=98.84  E-value=1e-07  Score=94.78  Aligned_cols=192  Identities=13%  Similarity=0.022  Sum_probs=123.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC-
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~-  214 (360)
                      ..++.+.+++...+.+....   +...|+....+.++.....+..++.+|  .+.-+|-.-+|+ .|...++.+++. | 
T Consensus        60 ~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~Sg~-~An~~v~~all~-~~  135 (493)
T PRK13580         60 YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHSGA-DANLVAFWAILA-HK  135 (493)
T ss_pred             cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCCcH-HHHHHHHHHHhc-cc
Confidence            34677777765544443211   223455566667777777777777776  333456656655 555566677764 4 


Q ss_pred             ------------------------------CCEEEEcCCCchHHH-----HHHHHcCCeEEEeecCCCCCcCCCHHHHHH
Q 018147          215 ------------------------------NDGILCPIPQYPLYS-----ASIALHGGTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       215 ------------------------------gd~Vlv~~P~y~~~~-----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                                                    ||+|+..++....+.     ..+.....+.+.++++.+ +..+|++++++
T Consensus       136 ~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~  214 (493)
T PRK13580        136 VESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAA  214 (493)
T ss_pred             ccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHH
Confidence                                          799998876654331     112222356677777754 34799999999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      .+++      +++.|++++.+|- |...+   +++|.++|+++|+++++|+++.--++.+.. ...  ...+ +  .+-|
T Consensus       215 ~~~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~-~~~--~~~~-~--~~~D  278 (493)
T PRK13580        215 LARE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV-FTG--DEDP-V--PHAD  278 (493)
T ss_pred             HHhh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceecccc-chh--hcCC-C--CCCc
Confidence            9988      6778888888776 44667   899999999999999999999886665431 100  0000 0  0123


Q ss_pred             ceEEEEeccCcCccc
Q 018147          340 ISLVSFQSVSKGRYF  354 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g  354 (360)
                         |+++|++|++.|
T Consensus       279 ---~vtgT~hKaL~G  290 (493)
T PRK13580        279 ---IVTTTTHKTLRG  290 (493)
T ss_pred             ---EEEeCChhhccC
Confidence               788999998843

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.81  E-value=5.8e-07  Score=89.83  Aligned_cols=214  Identities=17%  Similarity=0.149  Sum_probs=117.9

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|.+.+++.+.+..... ....|...    +....+|+.+.+..+  ...+.++++++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~-~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGs  123 (457)
T PRK05639         51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH-SMIGYTHS----ERAIRVAEKLAEISP--IENPKVLFGLSGS  123 (457)
T ss_pred             CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc-cccCccCC----HHHHHHHHHHHhhCC--CCcCEEEEeCchH
Confidence            34556666554     234478899999888876432 11123222    233445555554322  2236899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHH-cCC-------------eEEEeecCCC--CCcC----CCHHH---
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPYYLDEA--TGWG----LETSE---  256 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~-~g~-------------~~~~v~~~~~--~~~~----~d~~~---  256 (360)
                      +|+..+++.... .....|+.....|.+....... .|.             .++.+|....  ..|.    -+.++   
T Consensus       124 EA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  203 (457)
T PRK05639        124 DAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELIN  203 (457)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHH
Confidence            999999887542 1345788888888765433222 121             1222322210  0011    02332   


Q ss_pred             -----HHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          257 -----VKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       257 -----L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                           +++.+........++.+|+ ..| +...|.+. +.+-+++|.++|++||+++|.||++.+|...+.  ...... 
T Consensus       204 ~~~~~le~~l~~~~~~~~~iAAvI-~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~--~~a~~~-  279 (457)
T PRK05639        204 RFLDYLENYVFSHVVPPDEVAALF-AEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK--WFASEW-  279 (457)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch--HHHHHh-
Confidence                 3332221100122454555 455 44456644 577899999999999999999999998533332  111111 


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                       -+   -.||  +++   |+|++++|.-+|
T Consensus       280 -~g---v~PD--iv~---~gK~l~gG~pi~  300 (457)
T PRK05639        280 -FE---VKPD--LII---FGKGVASGMGLS  300 (457)
T ss_pred             -cC---CCCC--EEE---echhhcCCCcce
Confidence             11   2367  233   899999886544

>PLN02271 serine hydroxymethyltransferase

Probab=98.79  E-value=2.5e-07  Score=92.74  Aligned_cols=191  Identities=12%  Similarity=0.048  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHHccC
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      ..++.+++++...+.+....   +...|+-...+.++.....+...+.+|.....  -+|-.- +++.|...++.+|++ 
T Consensus       159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl~-  236 (586)
T PLN02271        159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLLL-  236 (586)
T ss_pred             cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhcC-
Confidence            55777777765544443211   12234444445556555556665656633211  345555 456777788888884 


Q ss_pred             CCCEEEEcCCCchHHHHH---------HHHcCCeE--EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          214 ENDGILCPIPQYPLYSAS---------IALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~---------~~~~g~~~--~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                      |||+|+..+..+.++...         +...|..+  ++|+++++ +..+|++++++.....     ++|+|++..-.||
T Consensus       237 PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~-----rPKLII~g~Sayp  310 (586)
T PLN02271        237 PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDF-----RPKILICGGSSYP  310 (586)
T ss_pred             CCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhc-----CCeEEEECchhcc
Confidence            999999988877765432         23345444  44446544 3479999999854432     8999998777777


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        ..++   +++|.++|+++|+++++|.++..-...... +++-..        +-|   |+..|..|++.|
T Consensus       311 --r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~-~~sP~~--------~aD---vvt~TTHKtLrG  365 (586)
T PLN02271        311 --REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKE-CVNPFD--------YCD---IVTSTTHKSLRG  365 (586)
T ss_pred             --CcCC---HHHHHHHHHHcCCEEEEECcccccccccCc-CCCCCc--------CCc---EEEeCCcccCCC
Confidence              5566   888899999999999999999764443321 211111        123   788899998854

>PRK05965 hypothetical protein; Provisional

Probab=98.79  E-value=3.2e-07  Score=91.80  Aligned_cols=211  Identities=16%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGA-YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ...+||+..+     -.--+|++++++.+.+.....  ... |..   ..+.+..+|+.+.+...  -..+.++++++++
T Consensus        45 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~--~~~~~~~---~~~~~~~lae~L~~~~p--~~~~~v~f~~sGS  117 (459)
T PRK05965         45 GHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPY--ATGYFHF---GSEPAIRLAAKLAERAP--GSLNHVYFTLGGS  117 (459)
T ss_pred             CCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCC--ccccccc---CCHHHHHHHHHHHhhCC--CCcCEEEEeCChh
Confidence            3445665444     123378899999998876432  111 111   12334456666655422  2346899999999


Q ss_pred             HHHHHHHHHHcc-----C-C-CCEEEEcCCCchHHHHHH-HHcCC------------eEEEeecC--CCCCcCCCH----
Q 018147          201 PAVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASI-ALHGG------------TLVPYYLD--EATGWGLET----  254 (360)
Q Consensus       201 ~al~~~~~~l~~-----~-~-gd~Vlv~~P~y~~~~~~~-~~~g~------------~~~~v~~~--~~~~~~~d~----  254 (360)
                      +|+..+++....     + + ..+|+...-.|.+..... ...+.            .+..++..  ....+.-|.    
T Consensus       118 EAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (459)
T PRK05965        118 DAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAII  197 (459)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHH
Confidence            999999987431     1 2 356888888887664321 11111            01122211  000111232    


Q ss_pred             ----HHHHHHHHHHHhcCCCccEEEEecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          255 ----SEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       255 ----~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                          +++++.+...  ...++.+|++.-.+...|.+ .+.+-+++|.++|++||+++|.||+..+|...+.  ...+.. 
T Consensus       198 ~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~a~~~-  272 (459)
T PRK05965        198 AASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP--LFACEA-  272 (459)
T ss_pred             HHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch--hhhHhh-
Confidence                4566666431  11245555544335555665 4667899999999999999999999999654442  222211 


Q ss_pred             HHhhCCCCCCceEEEEeccCcCccccc-cc
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFHF-FS  358 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~~-Rv  358 (360)
                          ....||     +-.++|+++||. -+
T Consensus       273 ----~gv~PD-----iv~~gKgl~gG~~Pi  293 (459)
T PRK05965        273 ----EGVVPD-----LMTVAKGLTSGYVPM  293 (459)
T ss_pred             ----cCCCCC-----eEEechhhccCCcce
Confidence                112377     345689999884 44

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.77  E-value=5.7e-07  Score=89.92  Aligned_cols=205  Identities=15%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             CCCccccCcc----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          127 HPSILDRSET----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       127 ~p~~l~~~~~----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ...+||+..+    -.--+|++++++.+.+..... ....|.     .+.+..+++.+.+..+  -..+.+++++++++|
T Consensus        71 G~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGseA  142 (459)
T PRK06082         71 GKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF-SPRRFT-----NETAIECAEKLTEIAG--GELNRVLFAPGGTSA  142 (459)
T ss_pred             CCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC-ccCccC-----CHHHHHHHHHHHHhCC--CCCCEEEECCCcHHH
Confidence            4456665422    123588899999988876432 111122     2445566666655433  123689999999999


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHHH-HHHHcCCe------------EEEeecCCC--CCcC-CC------HHHHHH
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEA--TGWG-LE------TSEVKK  259 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~~-~~~~~g~~------------~~~v~~~~~--~~~~-~d------~~~L~~  259 (360)
                      +..+++.... ....+|+...-.|..... .+...|..            +..++....  ..|. .|      ++.+++
T Consensus       143 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  222 (459)
T PRK06082        143 IGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEY  222 (459)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHH
Confidence            9999887532 123678887777776543 22222211            111221100  0011 01      244555


Q ss_pred             HHHHHHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      .++.    ..++ +.+|..| .+-.+.+.+.+-+++|.++|++||+++|.||+..+|.-.+.  ...+..  -+   -.|
T Consensus       223 ~i~~----~~~v-AavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~--~fa~e~--~g---v~P  290 (459)
T PRK06082        223 VIEK----EGGI-GAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE--WFTHQA--YG---IEP  290 (459)
T ss_pred             HHhc----CCCE-EEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hhHhHh--hC---CCC
Confidence            5542    1245 4445555 44334466778899999999999999999999998533332  111111  11   236


Q ss_pred             CceEEEEeccCcCccccc
Q 018147          339 DISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~~  356 (360)
                      |  ++   .++|++++|.
T Consensus       291 D--iv---~~gKgl~gG~  303 (459)
T PRK06082        291 D--IL---CIGKGLGGGL  303 (459)
T ss_pred             C--EE---EecccccCCC
Confidence            7  23   3899999884

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.77  E-value=3.5e-07  Score=91.66  Aligned_cols=205  Identities=15%  Similarity=0.085  Sum_probs=124.5

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +..++||+..+     -.--+|.+.+++.+.+....     .|..   ..+....+|+.+.+...   ..+.+.++++++
T Consensus        97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~-----~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGs  165 (474)
T PLN02482         97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT-----SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGT  165 (474)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC-----CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChH
Confidence            45667887555     22347889999999887642     1221   12455667777766542   147899999999


Q ss_pred             HHHHHHHHHHccC-CCCEEEEcCCCchHHHHHHH-Hc--CCeEE------EeecC--CC---CCcCCCHHHHHHHHHHHH
Q 018147          201 PAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIA-LH--GGTLV------PYYLD--EA---TGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       201 ~al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~-~~--g~~~~------~v~~~--~~---~~~~~d~~~L~~~i~~~~  265 (360)
                      +|...+++....- ..++|+...-.|.++...+. ..  |....      .++..  ++   -.| -|++.+++.++.. 
T Consensus       166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~-  243 (474)
T PLN02482        166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEAN-  243 (474)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhC-
Confidence            9999998875421 34678888888877643211 11  10000      00000  00   001 1688898888642 


Q ss_pred             hcCCCccEEEEecC-CCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEE
Q 018147          266 AKGITVRALVVINP-GNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (360)
Q Consensus       266 ~~g~~~k~iil~~P-~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i  343 (360)
                        +.++ +.+|..| ..-.|.+.+ .+.+++|.++|++||+++|+||+..++ ..+.  .... .. -+   ..||    
T Consensus       244 --~~~i-AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~--~ga~-~~-~g---v~PD----  308 (474)
T PLN02482        244 --KGEI-AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY--GGAQ-EY-FG---ITPD----  308 (474)
T ss_pred             --CCce-EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc--chHh-HH-hC---CCCC----
Confidence              1134 4445555 444576655 677999999999999999999999886 3332  1111 11 11   1266    


Q ss_pred             EEeccCcCcccccccc
Q 018147          344 SFQSVSKGRYFHFFSK  359 (360)
Q Consensus       344 ~~~S~SK~~~g~~RvG  359 (360)
                       +-+|+|++++|.-+|
T Consensus       309 -i~t~gK~lggG~Pig  323 (474)
T PLN02482        309 -LTTLGKVIGGGLPVG  323 (474)
T ss_pred             -EEEecchhhCCCceE
Confidence             247899999886554

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=98.77  E-value=8.5e-08  Score=87.52  Aligned_cols=143  Identities=15%  Similarity=0.188  Sum_probs=106.4

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch-HHHH--HHHHcCCe
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSA--SIALHGGT  238 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~-~~~~--~~~~~g~~  238 (360)
                      -|+...-...|.+.+|+.+.       ++..+++++|.+..+-.++..+- .+|.+|++-+-.+- .|..  +....|+.
T Consensus        51 VyGeD~tt~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~-~rg~eii~gd~~HI~~~E~gg~s~l~gv~  122 (384)
T KOG1368|consen   51 VYGEDPTTNRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCH-QRGSEIIVGDRAHIHRYEQGGISQLAGVH  122 (384)
T ss_pred             cccCCccHHHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhc-CCCceEEeccchheeehhccChhhhccce
Confidence            35554456899999999873       23457888887777655555554 59999999987664 3332  33445777


Q ss_pred             EEEeecCCCCCcCCCHHHHHHHHHHHH--hcCCCccEEEEecCCCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          239 LVPYYLDEATGWGLETSEVKKQLEAAK--AKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       239 ~~~v~~~~~~~~~~d~~~L~~~i~~~~--~~g~~~k~iil~~P~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +.++...+++  .+++++++.++....  -.++.+++|.+.|-||-+| .++|.+++++|.+||+++|+-+.+|.+=-.
T Consensus       123 ~~tv~~e~dg--tm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~  199 (384)
T KOG1368|consen  123 VRTVKNENDG--TMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIF  199 (384)
T ss_pred             eEeeeeCCCC--eeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhh
Confidence            7777655543  789999999997422  1235789999999988777 999999999999999999999999987543

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.76  E-value=8e-09  Score=96.38  Aligned_cols=155  Identities=17%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC-----CCCEEEEcCCCchHHHHHHHHcCCeEEEee
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----ENDGILCPIPQYPLYSASIALHGGTLVPYY  243 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~-----~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~  243 (360)
                      .++|.+.|.++.+...+...+-..|++++|+++.++.++.+|...     +--.|+...|+|+.|.............+.
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~  124 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA  124 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence            467777777766554444344457999999999999999998632     124599999999999987655543333333


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      -+.. .|. +-+            ....-+=+++.||||.|.+     .+.++   +..+..+|.|-+|..-.|.+-   
T Consensus       125 Gda~-~~~-~~~------------~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI---  179 (363)
T PF04864_consen  125 GDAS-NFK-NSD------------NPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPI---  179 (363)
T ss_dssp             EECC-CGT-T-S-------------CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS-----
T ss_pred             ccHH-hhc-cCC------------CCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeeccccccc---
Confidence            3322 232 100            0123344788999999986     33344   445567899999998555432   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         ..-.+      .|   |.+.|+||.=+ +|.|+||
T Consensus       180 ---~~~aD------~D---iMLFT~SK~TGHAGSR~GW  205 (363)
T PF04864_consen  180 ---TAPAD------HD---IMLFTLSKLTGHAGSRFGW  205 (363)
T ss_dssp             ----S-B--------S---EEEEEHHHHCS-GGG-EEE
T ss_pred             ---CCCCC------Cc---eEEEEEecccCccccccce
Confidence               22111      34   89999999543 5889999

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.75  E-value=6.3e-07  Score=88.92  Aligned_cols=205  Identities=13%  Similarity=0.016  Sum_probs=120.6

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+++++.+.+....   ...+.     .+.+..+|+.+.+...   ..+.+++++++++
T Consensus        52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~~-----~~~~~~la~~l~~~~p---~~~~v~f~~sGse  120 (428)
T PRK12389         52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGV---LYGTP-----TELEIEFAKMLKEAIP---SLEKVRFVNSGTE  120 (428)
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC---ccCCC-----CHHHHHHHHHHHHhCC---CCcEEEEeCCHHH
Confidence            4456665444     22347889999988887642   11221     2334556666655432   2468999999999


Q ss_pred             HHHHHHHHHccC-CCCEEEEcCCCchHHHHHHHH-cCCeEEE--------eecC-CCCCc---CCCHHHHHHHHHHHHhc
Q 018147          202 AVHMMMQLLIRS-ENDGILCPIPQYPLYSASIAL-HGGTLVP--------YYLD-EATGW---GLETSEVKKQLEAAKAK  267 (360)
Q Consensus       202 al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~-~g~~~~~--------v~~~-~~~~~---~~d~~~L~~~i~~~~~~  267 (360)
                      |+..+++....- ....|+...-.|.+....+.. .|.....        ++.. ..+..   -.|++.+++.++..   
T Consensus       121 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---  197 (428)
T PRK12389        121 AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKW---  197 (428)
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhc---
Confidence            999999865421 346788888778765443222 2211110        0000 00000   12688888888642   


Q ss_pred             CCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                      +.++.+|+ ..| ..-.|.+. +.+.+++|.++|+++|+++|.||++.+|. .+.  . ..... -+   ..||     +
T Consensus       198 ~~~vaavi-~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~R-t~~--~-~a~~~-~g---v~PD-----i  263 (428)
T PRK12389        198 GDEVAAVL-VEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFR-FMY--G-GAQDL-LG---VEPD-----L  263 (428)
T ss_pred             CCcEEEEE-EeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCc--c-hhhHH-hC---CCCC-----e
Confidence            12454444 445 55567655 56789999999999999999999999862 221  1 00011 11   2366     2


Q ss_pred             eccCcCcccccccc
Q 018147          346 QSVSKGRYFHFFSK  359 (360)
Q Consensus       346 ~S~SK~~~g~~RvG  359 (360)
                      -+++|++++|+-+|
T Consensus       264 vt~gK~lggG~Pi~  277 (428)
T PRK12389        264 TALGKIIGGGLPIG  277 (428)
T ss_pred             eeechhhcCCCcee
Confidence            47899999886554

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.75  E-value=5.4e-07  Score=87.25  Aligned_cols=198  Identities=18%  Similarity=0.168  Sum_probs=132.3

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+.-+     -.--+|.|.+++.+.+...     ..|+.+.   ++.-.+|+.+.++.+   ..|.|-+++++|
T Consensus        51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G-----~~fg~Pt---e~Ei~~Aell~~~~p---~~e~vrfvnSGT  119 (432)
T COG0001          51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG-----LSFGAPT---ELEVELAELLIERVP---SIEKVRFVNSGT  119 (432)
T ss_pred             CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhc-----CCCCCCC---HHHHHHHHHHHHhcC---cccEEEEecchh
Confidence            35567776555     2244788999999988873     2455543   455667777777644   348899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHH-cC--C-----------------eEEEeecCCCCCcCCCHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HG--G-----------------TLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~-~g--~-----------------~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      +|...+++.... -.-|.|+...-+|..+.+.+.. .|  .                 ..+.+|.+       |++.+++
T Consensus       120 EAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-------D~~al~~  192 (432)
T COG0001         120 EATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-------DLEALEE  192 (432)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-------CHHHHHH
Confidence            999988876521 1458899999888876654433 22  1                 11222211       7999999


Q ss_pred             HHHHHHhcCCCccEEEEecC--CCCcccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          260 QLEAAKAKGITVRALVVINP--GNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P--~NPTG~~~~~-~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      ++++.   +.++.+ ||..|  +| -|.+.+. +.+++|.++|+++|+++|.||+-..|...-. -......+       
T Consensus       193 ~~~~~---g~~IAa-VIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g-Gaq~~~gi-------  259 (432)
T COG0001         193 AFEEY---GDDIAA-VIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG-GAQGYYGV-------  259 (432)
T ss_pred             HHHHc---CCcEEE-EEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc-ccccccCc-------
Confidence            98873   224544 44555  66 4776665 4699999999999999999999998765421 01122111       


Q ss_pred             CCCceEEEEeccCcCcccccccc
Q 018147          337 EKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      .||     +..|.|..+||+-+|
T Consensus       260 ~PD-----lttlGKiIGGGlP~g  277 (432)
T COG0001         260 EPD-----LTTLGKIIGGGLPIG  277 (432)
T ss_pred             Ccc-----hhhhhhhhcCCccee
Confidence            256     678899999988765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.74  E-value=2.8e-07  Score=97.80  Aligned_cols=144  Identities=16%  Similarity=0.212  Sum_probs=104.5

Q ss_pred             CCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH---HHHHHcc----CCCCEEEEcCCCchHHH
Q 018147          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM---MMQLLIR----SENDGILCPIPQYPLYS  229 (360)
Q Consensus       160 ~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~---~~~~l~~----~~gd~Vlv~~P~y~~~~  229 (360)
                      .+.|.|   .+|..++...+..|+.+..|.+  .-. +..+|+.+|-..   +++....    ...+.|+++.-.+....
T Consensus       516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~~S-l~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP  592 (939)
T TIGR00461       516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--AIS-LQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP  592 (939)
T ss_pred             cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--Ccc-cCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence            455655   4678888888999999888865  222 223334433332   3333211    12357999998886656


Q ss_pred             HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEc
Q 018147          230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (360)
Q Consensus       230 ~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~D  309 (360)
                      ..++..|.+++.++++++  ..+|+++|+++++++   +.++++|++++|+| +|.+-+  ++++|+++|+++|.++++|
T Consensus       593 asa~~~G~~Vv~V~~d~~--G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VD  664 (939)
T TIGR00461       593 ASAAMAGMQVVPVNCDQD--GNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLD  664 (939)
T ss_pred             HHHHHCCCEEEEeccCCC--CCcCHHHHHHHHhhc---CCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEE
Confidence            668889999999998754  389999999999751   23789999999999 787743  4999999999999999999


Q ss_pred             cCCCC
Q 018147          310 EVYQE  314 (360)
Q Consensus       310 eaY~~  314 (360)
                      .++..
T Consensus       665 gAq~~  669 (939)
T TIGR00461       665 GANMN  669 (939)
T ss_pred             ecChh
Confidence            99844

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06062 hypothetical protein; Provisional

Probab=98.72  E-value=8.4e-07  Score=88.58  Aligned_cols=208  Identities=17%  Similarity=0.226  Sum_probs=119.4

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|++++++.+.+..... ....|     ..+.+..+|+.+.+...  -..+.++++++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~-----~~~~~~~lae~L~~~~p--~~~~~v~f~~SGs  122 (451)
T PRK06062         51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT-VAPAH-----ANDARSEAARLIAERAP--GDLSKVFFTNGGA  122 (451)
T ss_pred             CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC-cCCcc-----CCHHHHHHHHHHHHhCC--CCCCEEEEcCChH
Confidence            34556676554     234478899999988876432 11122     23344556666655432  1246899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CCe-----------EEEeecCC--CCCcC--CC-------HHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGT-----------LVPYYLDE--ATGWG--LE-------TSE  256 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~~-----------~~~v~~~~--~~~~~--~d-------~~~  256 (360)
                      +|...+++.... ....+|+...-.|.+........ +..           +..++...  ...|.  -|       ++.
T Consensus       123 EAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  202 (451)
T PRK06062        123 DANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAH  202 (451)
T ss_pred             HHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHH
Confidence            999999887542 13457888887787654333222 111           11111110  00111  12       456


Q ss_pred             HHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          257 VKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      +++.++..  ...++.+|+ ..| ..--|.+. +.+-+++|.++|+++|+++|.||++.+|.-.+.  ...+..  .+  
T Consensus       203 le~~l~~~--~~~~iAavi-iEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a~~~--~g--  273 (451)
T PRK06062        203 LERVIELE--GPSTIAAIL-LESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK--WFAIEH--FG--  273 (451)
T ss_pred             HHHHHHhc--CCCceEEEE-EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH--HHHHHh--cC--
Confidence            66666421  112454444 455 43346664 677899999999999999999999998533332  111111  11  


Q ss_pred             CCCCCceEEEEeccCcCccccc
Q 018147          335 YGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                       -.||     +-+|+|++++|.
T Consensus       274 -v~PD-----i~t~gK~lggG~  289 (451)
T PRK06062        274 -VVPD-----LITFAKGVNSGY  289 (451)
T ss_pred             -CCCC-----eeeechhhhcCC
Confidence             2367     346899999884

>PRK07482 hypothetical protein; Provisional

Probab=98.72  E-value=7.2e-07  Score=89.31  Aligned_cols=209  Identities=17%  Similarity=0.104  Sum_probs=119.3

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|++++++.++++....  ...+.  .-..+.+..+|+.+.+...  -..+.+++++++++
T Consensus        49 G~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~--~~~~~--~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSE  122 (461)
T PRK07482         49 GRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAY--YHTYV--GHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSD  122 (461)
T ss_pred             CCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCc--ccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHH
Confidence            4456666555     223488899999998887431  11110  0123455566666655432  23468999999999


Q ss_pred             HHHHHHHHHcc------CC-CCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCC--CCC-cCC------
Q 018147          202 AVHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE--ATG-WGL------  252 (360)
Q Consensus       202 al~~~~~~l~~------~~-gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~--~~~-~~~------  252 (360)
                      |+..+++....      .+ ..+|+...-.|.+..........             .+..++...  ... ++.      
T Consensus       123 Ave~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  202 (461)
T PRK07482        123 ANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFS  202 (461)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHH
Confidence            99999987631      11 35688888888765432221111             111111110  000 000      


Q ss_pred             --CHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          253 --ETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       253 --d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                        +++.+++.+...  ...++.+| |..| +.-.|.+ .+.+-+++|.++|++||+++|.||+..+|...+.  ...+..
T Consensus       203 ~~~~~~l~~~~~~~--~~~~iAAv-i~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a~~~  277 (461)
T PRK07482        203 AYCADELEELILAE--GPDTIAAF-IAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS--MFGSDH  277 (461)
T ss_pred             HHHHHHHHHHHHhc--CCCcEEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc--hhhHHh
Confidence              345666666421  11245444 4555 4445666 4677899999999999999999999999644442  212111


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                           .+..||     +-.++|+++||.
T Consensus       278 -----~gv~PD-----iv~~gKgl~gG~  295 (461)
T PRK07482        278 -----YGIEPD-----LITVAKGLTSAY  295 (461)
T ss_pred             -----cCCCCC-----EEEEccccccCc
Confidence                 112377     233689998884

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.72  E-value=3.2e-07  Score=91.53  Aligned_cols=160  Identities=20%  Similarity=0.189  Sum_probs=118.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      +.+..+.+|+.+    |   .....++++|.+.++..++.+++. +||.|+++.+++-+....+-..|+.++++....+.
T Consensus        72 i~eAqe~aA~~f----g---Ad~tyFvvNGTS~ank~vi~a~~~-~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np  143 (557)
T COG1982          72 IKEAQELAARVF----G---ADHTYFVVNGTSTANKAVINAVLT-PGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNP  143 (557)
T ss_pred             HHHHHHHHHHHh----C---CCceEEEECCccHHHHHHHHhhcC-CCCEEEecCCccHHHHHHHHHcCCceEEecCCCCc
Confidence            445555555554    3   123588999999999999999995 99999999999999999999999999988655443


Q ss_pred             Cc----CCCHHHHHHHHHHHHhcCCCc-cEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          249 GW----GLETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       249 ~~----~~d~~~L~~~i~~~~~~g~~~-k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .|    +++.+.+++++.++.    .. |+++|+||.. -|++++   +++|++++...++|+..|+++.-. ++-....
T Consensus       144 ~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l  214 (557)
T COG1982         144 LYGIIGGIPLETFKEALLAHP----DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDFSPML  214 (557)
T ss_pred             cccccCCCCHHHHHHHHHhCh----hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccc-ccccccC
Confidence            23    468999998886642    34 7899999876 599998   888899999999999999998763 2211111


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .. ..  .      ....+++.+|.-|.+++
T Consensus       215 ~~-~~--~------~~~~~~~tqS~HK~l~a  236 (557)
T COG1982         215 PE-SA--L------NGGADFVTQSTHKLLAA  236 (557)
T ss_pred             cc-hh--h------hcCceEEEechhhhhhh
Confidence            11 11  1      11247889999997654

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=98.71  E-value=6.6e-07  Score=82.26  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=114.3

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      -+..+|..+|..+++++..    .    ..+|..+. ...+-+.+.+-++..+. ..++.-.++...++.++..++..++
T Consensus        20 L~gPGPsnl~~~V~~A~~~----~----~lgh~sPe-~~qIm~~v~egikyVFk-T~n~~tf~isgsGh~g~E~al~N~l   89 (385)
T KOG2862|consen   20 LLGPGPSNLSGRVQEAMSR----P----SLGHMSPE-FVQIMDEVLEGIKYVFK-TANAQTFVISGSGHSGWEAALVNLL   89 (385)
T ss_pred             eecCCCcCCCHHHHHhhcC----C----ccccCCHH-HHHHHHHHHHHHHHHhc-cCCCceEEEecCCcchHHHHHHhhc
Confidence            3455566778777766432    1    33344332 33333333333322222 1233345666667899999999999


Q ss_pred             cCCCCEEEEcCC-Cch-HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          212 RSENDGILCPIP-QYP-LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       212 ~~~gd~Vlv~~P-~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      . |||.|++..- .|. .+.+..+.+|+++..++.+...  ...++++++++..+     +++++++++-..-||+.-+ 
T Consensus        90 e-Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~--~~~le~i~~~lsqh-----~p~~vfv~hgdsSTgV~q~-  160 (385)
T KOG2862|consen   90 E-PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQ--AVPLEEITEKLSQH-----KPKAVFVTHGDSSTGVLQD-  160 (385)
T ss_pred             C-CCCeEEEEEechHHHHHHHHHHhhCceeeEEecCccc--CccHHHHHHHHHhc-----CCceEEEEecCccccccch-
Confidence            5 9999988774 443 4678899999999999877653  68999999999886     8999999999889998755 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                       -++.+-++|++|+.++++|.+-+
T Consensus       161 -~~~~~g~lc~k~~~lllVD~VaS  183 (385)
T KOG2862|consen  161 -LLAISGELCHKHEALLLVDTVAS  183 (385)
T ss_pred             -HHHHHHHHhhcCCeEEEEechhh
Confidence             45666788999999999998864

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.71  E-value=7.8e-07  Score=88.59  Aligned_cols=195  Identities=14%  Similarity=0.149  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~  213 (360)
                      --+|.+++++.+.+++...  ...+..   ..+....+|+.+.+...  -..+.+++++++++|+..+++....     +
T Consensus        62 h~~p~v~~ai~~ql~~l~~--~~~~~~---~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~AlklAr~~~~~~g  134 (442)
T PRK13360         62 HGRPEIVEAVRAQAGELDY--APAFQM---GHPKAFELANRIAEIAP--GGLNHVFFTNSGSESVDTALKIALAYHRARG  134 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCC--cccCCc---CCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            3478899999988876432  111111   12334456666654321  1235899999999999999886431     0


Q ss_pred             --CCCEEEEcCCCchHHHHHHH-HcC------------CeEEEeecCC---CCCcCC--------CHHHHHHHHHHHHhc
Q 018147          214 --ENDGILCPIPQYPLYSASIA-LHG------------GTLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAK  267 (360)
Q Consensus       214 --~gd~Vlv~~P~y~~~~~~~~-~~g------------~~~~~v~~~~---~~~~~~--------d~~~L~~~i~~~~~~  267 (360)
                        ...+|+...-.|.+...... ..|            ..+..+|...   ...|..        ..+.|++.+...  .
T Consensus       135 ~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~  212 (442)
T PRK13360        135 EGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--D  212 (442)
T ss_pred             CCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--C
Confidence              13578888888876543211 111            1112222211   111211        134666666421  1


Q ss_pred             CCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                      ..++ +.+|..| ..-.|.+ .+.+-+++|.++|++||+++|+||++.++...+.  ...+. . .+   -.||     +
T Consensus       213 ~~~~-aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a~~-~-~g---v~PD-----i  279 (442)
T PRK13360        213 ASTI-AAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--PFAAQ-Y-FG---VTPD-----L  279 (442)
T ss_pred             CCcE-EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhh-h-cC---CCCc-----e
Confidence            1234 4455556 4445665 4567799999999999999999999988643332  21111 1 11   1266     2


Q ss_pred             eccCcCcccc
Q 018147          346 QSVSKGRYFH  355 (360)
Q Consensus       346 ~S~SK~~~g~  355 (360)
                      -+|||++++|
T Consensus       280 vt~gK~l~gG  289 (442)
T PRK13360        280 LTCAKGLTNG  289 (442)
T ss_pred             eeeeeccccC
Confidence            3789999877

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.71  E-value=7e-07  Score=88.57  Aligned_cols=194  Identities=13%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------  212 (360)
                      .-+|++++++.+.++.........+. ..    ....+++.+.+..+  -.-+.+++++++++|+..+++....      
T Consensus        61 h~~p~v~~ai~~~~~~~~~~~~~~~~-~~----~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e~AlklAr~~~~~~~  133 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDKMSHVMFGGFT-HK----PAIELCQKLVKMTP--NALDCVFLADSGSVAVEVALKMALQYWQAKG  133 (427)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccC-CH----HHHHHHHHHHhhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence            44788999998888764321111111 11    22334444444322  1236899999999999988886542      


Q ss_pred             CC-CCEEEEcCCCchHHHHHHHHc-CCe-------------EEEeecCCCCCcC-----CCHHHHHHHHHHHHhcCCCcc
Q 018147          213 SE-NDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVR  272 (360)
Q Consensus       213 ~~-gd~Vlv~~P~y~~~~~~~~~~-g~~-------------~~~v~~~~~~~~~-----~d~~~L~~~i~~~~~~g~~~k  272 (360)
                      .+ ..+|+...-.|.+....+... +..             +..++.. ...+.     -|++++++.+...   +.++.
T Consensus       134 ~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~~~l~~~---~~~va  209 (427)
T TIGR00508       134 EKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLAKLMELH---SDEIA  209 (427)
T ss_pred             CCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHHHHHHhc---CCcEE
Confidence            02 357888888887654322221 211             0111110 00111     1456666666532   12454


Q ss_pred             EEEEecC--CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC
Q 018147          273 ALVVINP--GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (360)
Q Consensus       273 ~iil~~P--~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S  349 (360)
                       .+|..|  ++--|. ..+.+.+++|.++|++||+++|+||++.++...+.  ......  .++   .||  ++   .++
T Consensus       210 -avivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~--~~~~~~--~~v---~pD--i~---~~g  276 (427)
T TIGR00508       210 -AVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK--LFACEH--AGV---VPD--IL---CVG  276 (427)
T ss_pred             -EEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--cchhhh--cCC---CCC--EE---Eec
Confidence             444555  444454 44688999999999999999999999988644442  211111  111   256  23   379


Q ss_pred             cCccccc
Q 018147          350 KGRYFHF  356 (360)
Q Consensus       350 K~~~g~~  356 (360)
                      |+++||+
T Consensus       277 K~l~gG~  283 (427)
T TIGR00508       277 KALTGGY  283 (427)
T ss_pred             hhhhcCc
Confidence            9998885

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.68  E-value=2.2e-06  Score=85.83  Aligned_cols=216  Identities=14%  Similarity=0.072  Sum_probs=118.4

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEc-CC
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLT-DG  198 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t-~G  198 (360)
                      +...+||+..+     -.--+|.+++++.+.+.+........|.     .+.+..+|+.+.+........ +.++++ ++
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~la~~L~~~~p~~~~~~~~v~f~~~S  135 (464)
T PRK06938         61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLT-----TPVKDQFVQDLFASLPEAFAREAKIQFCGPT  135 (464)
T ss_pred             CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccC-----CHHHHHHHHHHHHhCcccccccceEEEeCCC
Confidence            35567776554     2234788999998888653210011121     233444555554432111111 356564 68


Q ss_pred             hHHHHHHHHHHHccC-CCCEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCCC--CCcC--------CCH
Q 018147          199 ASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEA--TGWG--------LET  254 (360)
Q Consensus       199 a~~al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~--------~d~  254 (360)
                      +++|+..+++....- ...+|+...-.|.+........ |.            .+..++....  ..++        .++
T Consensus       136 GSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  215 (464)
T PRK06938        136 GTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANL  215 (464)
T ss_pred             cHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHH
Confidence            899999998875421 3467888887787654332221 10            1222222111  0011        125


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHh
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS  332 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~  332 (360)
                      +.+++.+++......++.+| |.-| +.--|.+. +.+-++++.++|+++|+++|.||+..+|.-.+.  ...+..    
T Consensus       216 ~~l~~~i~~~~~~~~~iAAv-I~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a~e~----  288 (464)
T PRK06938        216 HYLENLLDDPESGVVLPAAV-ILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK--MFAFEH----  288 (464)
T ss_pred             HHHHHHHHhhccCCCceEEE-EEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH--HHHHHh----
Confidence            66777775421111235444 4556 33346554 578899999999999999999999999643332  111111    


Q ss_pred             hCCCCCCceEEEEeccCcCcccccccc
Q 018147          333 MGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       333 ~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                       .+-.||     +-.++|+++||+-+|
T Consensus       289 -~gv~PD-----iv~~gKglggG~Pls  309 (464)
T PRK06938        289 -AGIIPD-----VVVLSKAIGGSLPLA  309 (464)
T ss_pred             -cCCCCC-----EEEeeccccCCCceE
Confidence             112377     334589998886554

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.68  E-value=1.8e-06  Score=87.24  Aligned_cols=208  Identities=15%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|++++++.+.+.....  ...+  ..+..+....+|+.+.+... +.+.+.+++++++++
T Consensus        88 G~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~--~~~~--~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsE  162 (504)
T PLN02760         88 GKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPF--YHSF--WNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSE  162 (504)
T ss_pred             CCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccc--eecc--cccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHH
Confidence            4456665553     224478899999998876432  1111  11233455666666655422 122357899999999


Q ss_pred             HHHHHHHHHcc------CC-CCEEEEcCCCchHHHH-HHHHcCCe------------EEEeecCCCCCcC----------
Q 018147          202 AVHMMMQLLIR------SE-NDGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEATGWG----------  251 (360)
Q Consensus       202 al~~~~~~l~~------~~-gd~Vlv~~P~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~----------  251 (360)
                      |...+++....      .+ ...|+...-.|.+... .+...|..            +..++...  .|.          
T Consensus       163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~  240 (504)
T PLN02760        163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH--YWRFHLPGETEEE  240 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc--ccccCCCCCcHHH
Confidence            99999987631      12 2578888877776543 22222221            11111110  011          


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCH
Q 018147          252 ---LETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (360)
Q Consensus       252 ---~d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~  326 (360)
                         ...++|++.+...  ...++ +.+|..| ..-.|.+. +.+-+++|.++|++||+++|.||++.+|.-.+.  ...+
T Consensus       241 ~~~~~~~~le~~l~~~--~~~~i-AAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~--~~a~  315 (504)
T PLN02760        241 FSTRLADNLENLILKE--GPETI-AAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT--MFGC  315 (504)
T ss_pred             HHHHHHHHHHHHHHhc--CCCce-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch--hhHH
Confidence               0123455555321  11134 4455556 44446554 567899999999999999999999988644442  1111


Q ss_pred             HHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          327 KKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       327 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      .    . .+-.||     +-+|+|++++|.
T Consensus       316 e----~-~gv~PD-----ivtlgK~lggG~  335 (504)
T PLN02760        316 D----K-YNIKPD-----LVSLAKALSSAY  335 (504)
T ss_pred             H----h-cCCCCc-----EEEecccccCCc
Confidence            1    1 112266     467799998873

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.68  E-value=7.6e-07  Score=88.30  Aligned_cols=193  Identities=15%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|.+++++.+.+.+........|.     .+.+..+|+.+.+...  ...+.+++++++++|+..+++....      .
T Consensus        61 ~~p~v~~ai~~q~~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~  133 (429)
T PRK06173         61 NHPRLNAAATNQLAKMSHIMFGGFT-----HEPAVELAQKLLEILP--PSLNKIFFADSGSVAVEVAMKMALQYQQAKGE  133 (429)
T ss_pred             CCHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHhhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCC
Confidence            3688999998888775321111122     2233445555544322  2346899999999999999887542      0


Q ss_pred             C-CCEEEEcCCCchHHHHH-HHHcCC-------------eEEEeecCCCCCcC-----CCHHHHHHHHHHHHhcCCCccE
Q 018147          214 E-NDGILCPIPQYPLYSAS-IALHGG-------------TLVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVRA  273 (360)
Q Consensus       214 ~-gd~Vlv~~P~y~~~~~~-~~~~g~-------------~~~~v~~~~~~~~~-----~d~~~L~~~i~~~~~~g~~~k~  273 (360)
                      + ..+|+...-.|.+.... +...|.             .+..+|.... .+.     -+++.|++.+..   .+.++.+
T Consensus       134 ~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l~~l~~~i~~---~~~~iAA  209 (429)
T PRK06173        134 VQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDEAIEPLQDLLEQ---KGDEIAA  209 (429)
T ss_pred             CCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHHHHHHHHHHHHh---CCCcEEE
Confidence            2 35688888888764221 111110             0112221100 011     135556666653   1224555


Q ss_pred             EEEecC--CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCc
Q 018147          274 LVVINP--GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK  350 (360)
Q Consensus       274 iil~~P--~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK  350 (360)
                      |++ .|  +.-.|.. .+.+-+++|.++|++||+++|+||++.++...+.  ...+..  .+   ..||   |+  .|+|
T Consensus       210 vi~-EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~--~~a~~~--~g---v~PD---iv--~~gK  276 (429)
T PRK06173        210 LIL-EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK--LFALEH--AG---VVPD---IM--CIGK  276 (429)
T ss_pred             EEE-cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc--chHHHh--cC---CCCC---EE--Eeeh
Confidence            554 45  5555665 5778899999999999999999999987533332  111111  11   1266   23  3899


Q ss_pred             Cccccc
Q 018147          351 GRYFHF  356 (360)
Q Consensus       351 ~~~g~~  356 (360)
                      +++||.
T Consensus       277 ~l~gG~  282 (429)
T PRK06173        277 ALTGGY  282 (429)
T ss_pred             hhhCCc
Confidence            998884

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.67  E-value=1.5e-06  Score=87.04  Aligned_cols=208  Identities=13%  Similarity=0.142  Sum_probs=118.3

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+++++.+.+..........+.     .+.+..+|+.+.+...  ...+.+++++++++
T Consensus        55 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~SGse  127 (460)
T PRK06916         55 GNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLA-----NVPSILLAEKLIEVVP--EGLKKVFYSDSGAT  127 (460)
T ss_pred             CCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence            3445665443     2345888999999888874321111121     2334455555554432  22368999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCC--CCCcC--------
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDE--ATGWG--------  251 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~--~~~~~--------  251 (360)
                      |+..+++....       ....+|+...-.|.+....+... |.            .+..+|...  ...+.        
T Consensus       128 Ave~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~  207 (460)
T PRK06916        128 AVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVK  207 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence            99999886542       12367888888887654332222 21            112222110  00011        


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEEec-CCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          252 LETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       252 ~d~~~L~~~i~~~~~~g~~~k~iil~~-P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                      -+++++++.++.   .+.++.+|++.- .+.-.|.+ .+.+-+++|.++|+++|+++|.||+..+|...+.  ...+.. 
T Consensus       208 ~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~--~~a~~~-  281 (460)
T PRK06916        208 KHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK--MFACEH-  281 (460)
T ss_pred             HHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch--hhHHHh-
Confidence            124555555542   122565555443 25555765 4778899999999999999999999988643332  111111 


Q ss_pred             HHhhCCCCCCceEEEEeccCcCccccc
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                          ..-.||     +-.++|+++||.
T Consensus       282 ----~gv~PD-----iv~~gK~l~gG~  299 (460)
T PRK06916        282 ----ENVTPD-----IMTAGKGLTGGY  299 (460)
T ss_pred             ----cCCCCC-----eeeeehhhhcCc
Confidence                112367     235799998883

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.67  E-value=3.8e-07  Score=88.09  Aligned_cols=179  Identities=11%  Similarity=0.027  Sum_probs=119.7

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcH---HHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHHccCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~I~~t~G-a~~al~~~~~~l~~~~g  215 (360)
                      .|..+++++.+.+....+.+...|....-.+   ++-+.+.+.+++.++.+ +..+|+++.| +|.|++.++..++. +|
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~-~~   80 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLA-EG   80 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCC-CC
Confidence            5888999999888753332344444433334   55555566666655631 2346888776 99999999999985 89


Q ss_pred             CEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          216 DGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       216 d~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      |+|++..-+..  .+...++.+|. +..+..++...|  .+++++++.  +      +++++|.+++-.|.||+..+   
T Consensus        81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~v~~th~ETstGv~~~---  148 (349)
T TIGR01364        81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S------EDAAYVHYCANETIHGVEFR---  148 (349)
T ss_pred             CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C------CCCCEEEEcCCCCcccEecc---
Confidence            99888776554  35677888898 777765533223  356665552  2      27899999999999999765   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                           ++++.+++++++|.+-.--..     ...+.+.           . +++.|--|.|++
T Consensus       149 -----~l~~~~~~l~iVDavss~g~~-----~id~~~~-----------d-~~~~ssqK~lgP  189 (349)
T TIGR01364       149 -----ELPDVKNAPLVADMSSNILSR-----PIDVSKF-----------G-LIYAGAQKNIGP  189 (349)
T ss_pred             -----eecccCCCeEEEEccccccCc-----cCCHHHc-----------c-EEEEecccccCC
Confidence                 556668999999998765211     2222211           2 677777898765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.67  E-value=1.5e-06  Score=86.82  Aligned_cols=195  Identities=15%  Similarity=0.148  Sum_probs=112.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~  213 (360)
                      --+|.+++++.+.+..........|.     .+.+..+|+.+.+..+  ..-+.+++++++++|+..+++....     .
T Consensus        70 h~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~~sGseAve~AlKlA~~~~~~rg  142 (453)
T PRK06943         70 HANPRINAALKDQLDTLEHAMLAGCT-----HEPAIELAERLAALTG--GTLGHAFFASDGASAVEIALKMSFHAWRNRG  142 (453)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhC
Confidence            34788999999888764321111122     2344556666655432  1225899999999999999987521     1


Q ss_pred             --CCCEEEEcCCCchHHHHHHHH-cCC------------eEEEeecCCC--CCcC--------CCHHHHHHHHHHHHhcC
Q 018147          214 --ENDGILCPIPQYPLYSASIAL-HGG------------TLVPYYLDEA--TGWG--------LETSEVKKQLEAAKAKG  268 (360)
Q Consensus       214 --~gd~Vlv~~P~y~~~~~~~~~-~g~------------~~~~v~~~~~--~~~~--------~d~~~L~~~i~~~~~~g  268 (360)
                        ...+|+...-.|.+....... .|.            .+..++....  ..+.        -+++++++.+..   .+
T Consensus       143 ~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~  219 (453)
T PRK06943        143 RGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RA  219 (453)
T ss_pred             CCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CC
Confidence              236788888888765422221 110            1112221110  0011        124566666642   12


Q ss_pred             CCccEEEEec-CCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEe
Q 018147          269 ITVRALVVIN-PGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (360)
Q Consensus       269 ~~~k~iil~~-P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~  346 (360)
                      .++.+|++.- .+.-.|.+ .+.+-+++|.++|++||+++|.||+..+|-..+.  ...+..+     .-.||     +-
T Consensus       220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~--~fa~~~~-----gv~PD-----iv  287 (453)
T PRK06943        220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT--FFACEQA-----GVWPD-----FL  287 (453)
T ss_pred             CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc--hhHHHhC-----CCCCC-----eE
Confidence            2565555543 25555664 5677899999999999999999999999644442  2222111     12377     23


Q ss_pred             ccCcCcccc
Q 018147          347 SVSKGRYFH  355 (360)
Q Consensus       347 S~SK~~~g~  355 (360)
                      .++|+++||
T Consensus       288 t~gKgl~gG  296 (453)
T PRK06943        288 CLSKGISGG  296 (453)
T ss_pred             eeehhhccC
Confidence            458998888

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.66  E-value=9.8e-07  Score=87.46  Aligned_cols=193  Identities=14%  Similarity=0.145  Sum_probs=111.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|.+++++.+.+.+........+     ..+.+..+|+.+.+..+  ...+.+++++++++|+..+++....      .
T Consensus        60 ~~p~i~~Ai~~q~~~~~~~~~~~~-----~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~  132 (428)
T PRK07986         60 NHPQLNAAMKSQIDAMSHVMFGGI-----THPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (428)
T ss_pred             CCHHHHHHHHHHHhhcCCcccccc-----CCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            368899999888876432011111     12345556666655432  2246899999999999999886542      1


Q ss_pred             CCCEEEEcCCCchHHHHHHHHc-CCe-------------EEEeecCCC---CCc-CCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          214 ENDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEA---TGW-GLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~-g~~-------------~~~v~~~~~---~~~-~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      ...+|+...-+|.+........ +..             +..++....   ..| .-|++++++.++..   +.++.+|+
T Consensus       133 ~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi  209 (428)
T PRK07986        133 PRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVI  209 (428)
T ss_pred             CCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEE
Confidence            2467888888887643222211 211             111211100   001 12456777777531   22444444


Q ss_pred             EecC--CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          276 VINP--GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       276 l~~P--~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                       ..|  +.-.|.+ .+.+.+++|.++|+++|+++|+||++.++...+.  ...+..     ..-.||  ++   .|+|++
T Consensus       210 -~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~--~fa~~~-----~gv~PD--i~---t~gK~l  276 (428)
T PRK07986        210 -LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK--LFACEH-----AGIAPD--IL---CLGKAL  276 (428)
T ss_pred             -EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC--eeeecc-----cCCCCC--EE---Eechhh
Confidence             444  4444653 4568899999999999999999999988533332  111111     111256  23   489999


Q ss_pred             ccc
Q 018147          353 YFH  355 (360)
Q Consensus       353 ~g~  355 (360)
                      +||
T Consensus       277 ~gG  279 (428)
T PRK07986        277 TGG  279 (428)
T ss_pred             hCC
Confidence            888

>PRK12403 putative aminotransferase; Provisional

Probab=98.65  E-value=2.5e-06  Score=85.42  Aligned_cols=196  Identities=17%  Similarity=0.152  Sum_probs=106.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|.+++++.+.++....  ...+  ..+..+....+++.+.+..+  -.-+.+++++++++|+..+++....      .
T Consensus        71 ~hp~v~~A~~~q~~~~~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~  144 (460)
T PRK12403         71 GRKDLAAAAARQMEQLPY--YNMF--FHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGK  144 (460)
T ss_pred             CCHHHHHHHHHHHHhCCC--eecc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCC
Confidence            478899999998887432  1111  01223344555555554432  1236899999999999999987641      1


Q ss_pred             CCCE-EEEcCCCchHHHH-HHHHcCCe-----------EEEeecCC--CCCcCCC--------HHHHHHHHHHHHhcCCC
Q 018147          214 ENDG-ILCPIPQYPLYSA-SIALHGGT-----------LVPYYLDE--ATGWGLE--------TSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       214 ~gd~-Vlv~~P~y~~~~~-~~~~~g~~-----------~~~v~~~~--~~~~~~d--------~~~L~~~i~~~~~~g~~  270 (360)
                      +++. |+...-.|.+... .+...|..           +..+|...  ...+.+.        .+.+++.+.+.  ...+
T Consensus       145 ~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~  222 (460)
T PRK12403        145 PQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAEN  222 (460)
T ss_pred             CCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCc
Confidence            3333 4454556665432 22222211           11221110  0001111        24454544321  1113


Q ss_pred             ccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc
Q 018147          271 VRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~  348 (360)
                      +. .+|..| ..-.|.+. +.+-+++|.++|++||+++|.||+...|.-.+.  ...+..+  +   -.||  ++   .+
T Consensus       223 ia-avI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a~e~~--g---v~PD--iv---~~  289 (460)
T PRK12403        223 VA-GFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE--WFAHEHF--G---FEPD--TL---SI  289 (460)
T ss_pred             eE-EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhhhhhc--C---CCCC--eE---EE
Confidence            43 444556 44446554 567799999999999999999999988643332  1111111  1   1266  23   38


Q ss_pred             CcCccccc
Q 018147          349 SKGRYFHF  356 (360)
Q Consensus       349 SK~~~g~~  356 (360)
                      +|++++|.
T Consensus       290 gK~lggG~  297 (460)
T PRK12403        290 AKGLTSGY  297 (460)
T ss_pred             cccccccc
Confidence            99999884

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.64  E-value=1.1e-06  Score=87.33  Aligned_cols=207  Identities=14%  Similarity=0.051  Sum_probs=119.1

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|.+.+++.+.+....   ...+.     .+.+..+|+.+.+..+  ...+.++++++++
T Consensus        51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~SGs  120 (433)
T PRK00615         51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---SYGLT-----SEQEILFAEELFSYLG--LEDHKIRFVSSGT  120 (433)
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC---CCCCC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCchH
Confidence            34556666544     22447889999988887642   11111     2334555666655432  2236899999999


Q ss_pred             HHHHHHHHHHccC-CCCEEEEcCCCchHHHHH----HHHcCCeE----EEe--e-cCCC-CCc-CCCHHHHHHHHHHHHh
Q 018147          201 PAVHMMMQLLIRS-ENDGILCPIPQYPLYSAS----IALHGGTL----VPY--Y-LDEA-TGW-GLETSEVKKQLEAAKA  266 (360)
Q Consensus       201 ~al~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~----~~~~g~~~----~~v--~-~~~~-~~~-~~d~~~L~~~i~~~~~  266 (360)
                      +|+..+++....- ....|+...-.|.++...    +...+...    ..+  + .... ..+ .-|++.+++.+...  
T Consensus       121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--  198 (433)
T PRK00615        121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL--  198 (433)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc--
Confidence            9999999876421 235688777778775421    11111000    000  0 0000 000 12678888888642  


Q ss_pred             cCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          267 KGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       267 ~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                       +.++. .+|..| ..-.|.+. +.+-+++|.++|++||+++|.||++.++ ..+.  ....     +..+..||  ++ 
T Consensus       199 -~~~~a-avI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~--~ga~-----~~~gv~PD--i~-  265 (433)
T PRK00615        199 -GHRVA-GVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ--GGAA-----AIYHVKPD--IT-  265 (433)
T ss_pred             -CCceE-EEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH--hHHH-----HhcCCCCC--eE-
Confidence             12344 445555 33346655 4667999999999999999999999876 3332  1111     11112366  22 


Q ss_pred             EeccCcCcccccccc
Q 018147          345 FQSVSKGRYFHFFSK  359 (360)
Q Consensus       345 ~~S~SK~~~g~~RvG  359 (360)
                        .|+|++++|.-+|
T Consensus       266 --~~gK~lggG~p~~  278 (433)
T PRK00615        266 --VYGKILGGGLPAA  278 (433)
T ss_pred             --EEcccccCCccee
Confidence              4899999876444

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.64  E-value=1.6e-06  Score=85.75  Aligned_cols=193  Identities=14%  Similarity=0.120  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------  212 (360)
                      --++.+.+++.+.++.........+.     .+....+|+.+.+..+  -.-+.+++++++++|+..+++....      
T Consensus        56 h~~p~i~~ai~~q~~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g  128 (422)
T PRK05630         56 HGHPRLKAAAHKQIDTMSHVMFGGLT-----HEPAIKLTRKLLNLTD--NGLDHVFYSDSGSVSVEVAIKMALQYSKGQG  128 (422)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccCCcC-----CHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            34788999999888864320011111     2234455665554422  1236899999999999998886431      


Q ss_pred             CC-CCEEEEcCCCchHHHHHHHHc-CC-------------eEEEeecCCCCCcCCCH-------HHHHHHHHHHHhcCCC
Q 018147          213 SE-NDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEATGWGLET-------SEVKKQLEAAKAKGIT  270 (360)
Q Consensus       213 ~~-gd~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~d~-------~~L~~~i~~~~~~g~~  270 (360)
                      .+ ..+|+...-.|.+....+... +.             .+..+|....  ...+.       +.+++.+.+      +
T Consensus       129 ~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~------~  200 (422)
T PRK05630        129 HPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYLRSLELLIDE------T  200 (422)
T ss_pred             CCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc--cCCChHHHHHHHHHHHHHHhh------c
Confidence            02 256888888887643322211 11             1122222211  01122       233333332      5


Q ss_pred             ccEEEEecC--CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEec
Q 018147          271 VRALVVINP--GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS  347 (360)
Q Consensus       271 ~k~iil~~P--~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S  347 (360)
                      +.+|++. |  +.-.|.+. +.+-+++|.++|++||+++|+||++.++...+.  ...+     +.....||+  +   +
T Consensus       201 iAAvi~E-Pi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a~-----~~~gv~PDi--~---t  267 (422)
T PRK05630        201 VAAIIIE-PIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE--LFAT-----LAAGVTPDI--M---C  267 (422)
T ss_pred             eEEEEEe-chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch--hhHH-----HhcCCCCCe--e---e
Confidence            6555554 4  55567654 567899999999999999999999988633332  1111     111223672  2   7


Q ss_pred             cCcCccccc-ccc
Q 018147          348 VSKGRYFHF-FSK  359 (360)
Q Consensus       348 ~SK~~~g~~-RvG  359 (360)
                      |+|+++||. -+|
T Consensus       268 ~gK~l~gG~~p~~  280 (422)
T PRK05630        268 VGKALTGGFMSFA  280 (422)
T ss_pred             eechhhcCccccc
Confidence            899998873 443

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.64  E-value=1e-06  Score=84.77  Aligned_cols=196  Identities=17%  Similarity=0.160  Sum_probs=114.8

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc------c-C
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI------R-S  213 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~------~-~  213 (360)
                      +|++.+++.+.+.....     ........+.+.++++.+.+..+.  ..+++++++++++|+..+++...      . .
T Consensus        34 ~p~i~~ai~~~~~~~~~-----~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve~Alkla~~~~~~~~~~  106 (339)
T PF00202_consen   34 HPEIAEAIAEQANKLNY-----VSFSGFTHPEAAELAEKLAELFPG--GLDRVFFANSGSEAVEAALKLARQYHNKRAYT  106 (339)
T ss_dssp             -HHHHHHHHHHHHHCSS-----CSTTTSEEHHHHHHHHHHHHHSST--TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccccchhHHHHhhhccc-----ccccceeccchhhhhhhhhhcccc--ccceeeeccCchHHHHHHHHHhhccccccccc
Confidence            67888998888877432     111222445667777777776531  45689999999999999998766      2 2


Q ss_pred             CCCEEEEcCCCchHHHHHHHHc-C------------CeEEEeecCCCCC---cCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 018147          214 ENDGILCPIPQYPLYSASIALH-G------------GTLVPYYLDEATG---WGLETSEVKKQLEAAKAKGITVRALVVI  277 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~-g------------~~~~~v~~~~~~~---~~~d~~~L~~~i~~~~~~g~~~k~iil~  277 (360)
                      ....|+...-.|.+........ +            ..+..+|......   +.-..+.+++.+.....  .++ +.+|.
T Consensus       107 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i-aaviv  183 (339)
T PF00202_consen  107 GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNA--DEI-AAVIV  183 (339)
T ss_dssp             TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHG--GGE-EEEEE
T ss_pred             CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcC--CcE-EEEEE
Confidence            4468888888887543322221 1            2234555442100   00011223333332211  145 44555


Q ss_pred             cC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          278 NP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       278 ~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      .| +.-.|... +.+-+++|.++|+++|+++|.||++.++...+.  +..+..  .++   .||  +   -+++|++++|
T Consensus       184 EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~--~~a~~~--~gv---~PD--i---v~~gK~l~gG  251 (339)
T PF00202_consen  184 EPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK--FFASEH--YGV---DPD--I---VTFGKGLGGG  251 (339)
T ss_dssp             ESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS--SSGHHH--HTS---SSS--E---EEEEGGGGTT
T ss_pred             eccccccCccccccchhhehcccccccccceecccccccccccCC--ccceec--ccc---cCc--c---cccccchhhh
Confidence            56 33345444 567899999999999999999999999755553  333322  222   377  2   3446999988


Q ss_pred             ccc
Q 018147          356 FFS  358 (360)
Q Consensus       356 ~Rv  358 (360)
                      .-+
T Consensus       252 ~p~  254 (339)
T PF00202_consen  252 LPI  254 (339)
T ss_dssp             SSE
T ss_pred             hhc
Confidence            543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.64  E-value=1.9e-06  Score=85.91  Aligned_cols=195  Identities=12%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C-
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S-  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~-  213 (360)
                      -+|.+++++.+.+..........+.     .+....+|+.+.+...  ...+.+++++++++|+..+++....     + 
T Consensus        66 ~~p~v~~ai~~ql~~l~~~~~~~~~-----~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~  138 (445)
T PRK09221         66 GRPEIVEAVARQAATLDYAPAFQMG-----HPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARGQ  138 (445)
T ss_pred             CCHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            4788999998888764321111121     2233445666654332  1236899999999999999886531     0 


Q ss_pred             -CCCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCC---CCCcCC--------CHHHHHHHHHHHHhcC
Q 018147          214 -ENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAKG  268 (360)
Q Consensus       214 -~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~~--------d~~~L~~~i~~~~~~g  268 (360)
                       ...+|+...-.|.+........+.             .+..+|...   ...|..        ..+++++.++..  ..
T Consensus       139 ~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~  216 (445)
T PRK09221        139 GTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DA  216 (445)
T ss_pred             CCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CC
Confidence             135788888888765432221110             112222110   000111        134556655431  01


Q ss_pred             CCccEEEEecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEec
Q 018147          269 ITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS  347 (360)
Q Consensus       269 ~~~k~iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S  347 (360)
                      .++.+|++.--..-.|.+. +.+-+++|.++|+++|+++|+||++.+|.-.+.  ...+..    . .-.||     +-+
T Consensus       217 ~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~~~~~----~-gv~PD-----i~~  284 (445)
T PRK09221        217 STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--AFAAER----F-GVTPD-----IIT  284 (445)
T ss_pred             CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch--hhHHHh----c-CCCCC-----EEE
Confidence            2454444443355567655 466799999999999999999999988543332  111111    1 11256     347


Q ss_pred             cCcCcccc
Q 018147          348 VSKGRYFH  355 (360)
Q Consensus       348 ~SK~~~g~  355 (360)
                      +||++++|
T Consensus       285 ~gK~l~gG  292 (445)
T PRK09221        285 FAKGLTNG  292 (445)
T ss_pred             eccccccC
Confidence            89999877

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.64  E-value=8.6e-07  Score=95.28  Aligned_cols=137  Identities=16%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHH---HHHHHHccCCCC----EEEEcCCCchHHHHHHHHcCC
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVH---MMMQLLIRSEND----GILCPIPQYPLYSASIALHGG  237 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~-Ga~~al~---~~~~~l~~~~gd----~Vlv~~P~y~~~~~~~~~~g~  237 (360)
                      .+|..++...+.+++.+..|.    +++.+.. |+++|..   ++++.+...+||    .|+++...|......+...|.
T Consensus       537 ~qG~l~~i~e~q~~l~eltG~----d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~  612 (954)
T PRK05367        537 AAGYRELIDQLEAWLAEITGY----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGM  612 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC----CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCC
Confidence            457778888888999888884    3566655 4444432   233333223565    599999999888888899999


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +++.++++.++  .+|+++|++++++.   ..++.+|++++|++-.+...+   +++|+++|+++|+++++|.++..
T Consensus       613 ~vv~v~~d~~G--~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~  681 (954)
T PRK05367        613 KVVVVACDENG--NIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMN  681 (954)
T ss_pred             EEEEECCCCCC--CcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChh
Confidence            99999997653  79999999998652   124778888898865333345   99999999999999999999953

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.63  E-value=3.3e-07  Score=89.06  Aligned_cols=188  Identities=16%  Similarity=0.066  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccC
Q 018147          140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~  213 (360)
                      .++.+.+++...+.+....   +..-|+...-+.++.+...+..++.+|  +++++..+   ..+++.|...++.+|++ 
T Consensus        32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~--~~~~~w~anvqp~SGs~An~av~~aLl~-  108 (399)
T PF00464_consen   32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG--AEPKEWYANVQPHSGSQANLAVYMALLK-  108 (399)
T ss_dssp             --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE---SSHHHHHHHHHHHHT--
T ss_pred             cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC--CCcccceEEeecCCchHHHHHHHHHHHh-
Confidence            3555655544433332210   112233334345555555566666666  34443322   34677888899999995 


Q ss_pred             CCCEEEEcCCCchHHHH---H--H-----HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          214 ENDGILCPIPQYPLYSA---S--I-----ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~---~--~-----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      |||+|+..++...++..   .  .     .....+.+.|+++++ +..+|.+++++.+++.     ++|+|++---..|-
T Consensus       109 pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~~  182 (399)
T PF00464_consen  109 PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEH-----KPKLIICGASSYPR  182 (399)
T ss_dssp             TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH-------SEEEEE-SSTSS
T ss_pred             hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhc-----CCCEEEECchhccC
Confidence            99999999977765432   1  1     224567889999865 4689999999999887     89999887444332


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        .   -+++++.++|.+.|.+++.|.++.. ++-.+.  +++....        -|   |+..|.-|+|.|
T Consensus       183 --~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~~P~~~--------AD---vvt~sThKtl~G  236 (399)
T PF00464_consen  183 --P---IDFKRFREIADEVGAYLMADISHIAGLIAGGL--FPNPFPY--------AD---VVTGSTHKTLRG  236 (399)
T ss_dssp             --------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S--GCCT--------SS---EEEEESSGGG-S
T ss_pred             --c---cCHHHHHHHHHhcCcEEEecccccccceehhe--ecCcccc--------ce---EEEeeccccccc
Confidence              2   3488999999999999999999854 444442  3332221        23   788999999865

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK06917 hypothetical protein; Provisional

Probab=98.63  E-value=2.9e-06  Score=84.59  Aligned_cols=195  Identities=14%  Similarity=0.139  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|.+.+++.+.+.+........|.     .+.+..+|+.+.+...  ...+.+++++++++|+..+++....      .
T Consensus        48 ~hp~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~  120 (447)
T PRK06917         48 GVKEIADAIKEQAEEVSFVYRSQFT-----SEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANETAMKIAIQHFQERGI  120 (447)
T ss_pred             CCHHHHHHHHHHHhhCcCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCC
Confidence            3888999999888874210011122     2344556666655432  1235799999999999999987621      1


Q ss_pred             C-CCEEEEcCCCchHHHHHHHHc-CCe------------EEEeecCCC--CCcCC--------CHHHHHHHHHHHHhcCC
Q 018147          214 E-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEA--TGWGL--------ETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       214 ~-gd~Vlv~~P~y~~~~~~~~~~-g~~------------~~~v~~~~~--~~~~~--------d~~~L~~~i~~~~~~g~  269 (360)
                      + ..+|+...-.|.......... +..            +..++....  ..+.-        +++.+++.++..  ...
T Consensus       121 t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~  198 (447)
T PRK06917        121 QGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAE  198 (447)
T ss_pred             CCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCC
Confidence            2 367888888887655433222 210            111111100  00111        234555555431  011


Q ss_pred             CccEEEEecC-C-CCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEe
Q 018147          270 TVRALVVINP-G-NPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (360)
Q Consensus       270 ~~k~iil~~P-~-NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~  346 (360)
                      ++.+|+ ..| . |--|. ..+.+-+++|.++|+++|+++|.||+..+|.-.+.  ...+..  -+   -.||     +-
T Consensus       199 ~iAAvi-~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~--~~a~~~--~g---v~PD-----i~  265 (447)
T PRK06917        199 HIAAFI-AEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA--MFAMEH--WG---VEPD-----IM  265 (447)
T ss_pred             ceEEEE-EeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc--hhhHHh--cC---CCCC-----EE
Confidence            454444 455 3 33344 45678899999999999999999999998533332  111111  11   2267     34


Q ss_pred             ccCcCccccc
Q 018147          347 SVSKGRYFHF  356 (360)
Q Consensus       347 S~SK~~~g~~  356 (360)
                      +|+|++++|.
T Consensus       266 ~~gK~l~~G~  275 (447)
T PRK06917        266 TLGKGLGAGY  275 (447)
T ss_pred             EeeehhccCC
Confidence            6799998874

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.63  E-value=1.5e-06  Score=84.77  Aligned_cols=192  Identities=18%  Similarity=0.183  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      +.+..++++..        +.-.|..+.-...|.+.+++.+    |    .+.++.|..+..+=.+++..+++.+||+|+
T Consensus        55 pS~~m~aAM~~--------GDD~Y~gdpSv~~Lee~vael~----G----~E~alpthqGRgaE~Il~~~~~~~~g~e~g  118 (467)
T TIGR02617        55 VTQSMQAAMMR--------GDEAYSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLIKKREQEKG  118 (467)
T ss_pred             CCHHHHHHHHc--------CCcccccCchHHHHHHHHHHHh----C----CceEEECCCCchHHHHHHHhhccccccccc
Confidence            45555555543        1335877777899999999987    3    345788877788888888888854788777


Q ss_pred             EcCC-------C-chHHHHHHHHcCCeEEEeecCC------CC--CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC-
Q 018147          220 CPIP-------Q-YPLYSASIALHGGTLVPYYLDE------AT--GWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-  282 (360)
Q Consensus       220 v~~P-------~-y~~~~~~~~~~g~~~~~v~~~~------~~--~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP-  282 (360)
                      +..+       . |......+...|+.++.++.++      +.  +-.+|+++|+++|++...+  ++-.+...--+|- 
T Consensus       119 ~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~--~i~~v~~tlt~N~~  196 (467)
T TIGR02617       119 LDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITCNSA  196 (467)
T ss_pred             ccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC--CceeeeeeEEEecC
Confidence            5443       2 2223456777898888764321      11  2268999999999863111  2222222111232 


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-Ccc-----CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVY-----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      -|+++|.+.++++.++|++||+.++.|.+=-. ..+     +..-.-.|++.+..++.. +-|   .+.-|+||.++
T Consensus       197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aD---svt~slsKglg  269 (467)
T TIGR02617       197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YAD---MLAMSAKKDAM  269 (467)
T ss_pred             CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCC---EEEEEcCCCCC
Confidence            58899999999999999999999999974322 111     000124566666655543 334   45679999865

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=98.62  E-value=4.8e-07  Score=87.75  Aligned_cols=166  Identities=15%  Similarity=0.068  Sum_probs=107.1

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcH---HHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHH
Q 018147          131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMM  206 (360)
Q Consensus       131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~I~~-t~Ga~~al~~~  206 (360)
                      +-++.+|...|+.|++++.+.+.+....+...+....-.+   ++-+.+.+.+++.+|.+ +..+|++ +++++.++..+
T Consensus         5 ~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~   83 (360)
T PRK05355          5 YNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMV   83 (360)
T ss_pred             eeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHH
Confidence            3456667788999999988876432111233332222223   44455555555555531 2335555 46789999999


Q ss_pred             HHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHH-HHHHHHhcCCCccEEEEecCCCCc
Q 018147          207 MQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      +..++. +||++++..-+...  +...++.+|.. ..+..++..+ ..+..++++ .+++      ++++|.+++-.|.|
T Consensus        84 ~~nl~~-~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g-~~~~~~~~~~~l~~------~~~~V~~th~eTst  154 (360)
T PRK05355         84 PMNLLG-GGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDG-FTYIPPLDEWQLSD------DAAYVHYTSNETID  154 (360)
T ss_pred             HHhcCC-CCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccC-CCCCCChhhccCCC------CCCEEEEccCCCcc
Confidence            999995 89998877765543  45677888865 5555443222 233333433 5544      68999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |+..+  ++.+|      +|+++|+|.+-.-
T Consensus       155 Gv~~~--~i~~i------~g~l~vVDavss~  177 (360)
T PRK05355        155 GTEFH--ELPDT------GDVPLVADMSSDI  177 (360)
T ss_pred             eEecC--ccccc------CCCcEEEEcCccc
Confidence            99984  35555      8999999998765

>PRK07046 aminotransferase; Validated

Probab=98.61  E-value=2.3e-06  Score=85.51  Aligned_cols=201  Identities=17%  Similarity=0.070  Sum_probs=119.3

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|.+++++.+.+....   ...+     ..+....+|+.+.+..+    .+.+.++++++
T Consensus        73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~---~~~~-----~~~~~~~lAe~l~~~~~----~~~v~F~nSGt  140 (453)
T PRK07046         73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL---TTML-----PSEDAAWVGEELARRFG----LPYWQVATTAT  140 (453)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCC---CCCC-----CCHHHHHHHHHHHHHhC----CCEEEEECCHH
Confidence            45667887544     22346889999999887642   1122     12445556666665432    57899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHH-H-cCCeEEE------ee--cCCC---CCcCCCHHHHHHHHHHHHh
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-L-HGGTLVP------YY--LDEA---TGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~-~-~g~~~~~------v~--~~~~---~~~~~d~~~L~~~i~~~~~  266 (360)
                      +|...+++.... ...+.|+...-.|.++..... . .+.+...      ++  ....   -.| -|++.+++.+..   
T Consensus       141 EA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~---  216 (453)
T PRK07046        141 DANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD---  216 (453)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC---
Confidence            999999887542 134678888888877643211 1 1111000      00  0000   011 178888888742   


Q ss_pred             cCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          267 KGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       267 ~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                        .++.+ +|..| +.-.|.+. +.+.++++.++|+++|+++|.||+.. |..+-.. .   ... -+   -.||     
T Consensus       217 --~~vAa-vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg-~---~~~-~g---v~PD-----  279 (453)
T PRK07046        217 --GDVAA-VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG-Y---TRA-HG---LEPD-----  279 (453)
T ss_pred             --CCeEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc-h---hHH-hC---CCcc-----
Confidence              14544 44556 33335444 45679999999999999999999986 4322111 1   111 11   2367     


Q ss_pred             EeccCcCcccccccc
Q 018147          345 FQSVSKGRYFHFFSK  359 (360)
Q Consensus       345 ~~S~SK~~~g~~RvG  359 (360)
                      +-+|+|+++||.-+|
T Consensus       280 i~t~gK~lggG~Pi~  294 (453)
T PRK07046        280 FLVVGKPIAGGVPCA  294 (453)
T ss_pred             ceeehhhhcCCCcce
Confidence            235899999887554

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.60  E-value=2.4e-06  Score=85.70  Aligned_cols=209  Identities=15%  Similarity=0.125  Sum_probs=119.7

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC---CCCCCEEEcCC
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFLTDG  198 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~---~~~~~I~~t~G  198 (360)
                      ...+||+..+     -.--+|.+.+++.+.+..........+.     .+.+..+++.+.+.....   -..+.++++++
T Consensus        63 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s  137 (472)
T PRK08742         63 GRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN  137 (472)
T ss_pred             CCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence            4456666444     2244788999988887654220111222     233556666665543210   12358999999


Q ss_pred             hHHHHHHHHHHHcc------CC-CCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCC--CCcCC----
Q 018147          199 ASPAVHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEA--TGWGL----  252 (360)
Q Consensus       199 a~~al~~~~~~l~~------~~-gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~--~~~~~----  252 (360)
                      +++|+..+++....      .+ ..+|+...-.|.+........+..             +..+|....  ..++.    
T Consensus       138 GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~  217 (472)
T PRK08742        138 GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAED  217 (472)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHH
Confidence            99999999887531      02 367888888887665333222111             122221110  01111    


Q ss_pred             ----CHHHHHHHHHHHHhcCCCccEEEEecC--CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCC
Q 018147          253 ----ETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS  325 (360)
Q Consensus       253 ----d~~~L~~~i~~~~~~g~~~k~iil~~P--~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s  325 (360)
                          +++.+++.+..   ...++.+| |..|  ++-.|. ..+++-++++.++|+++|+++|.||+..+|...+.  ...
T Consensus       218 ~~~~~~~~l~~~~~~---~~~~iAAv-I~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~--~~a  291 (472)
T PRK08742        218 YALQAADALQALFEQ---SPGEICAL-ILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT--LFA  291 (472)
T ss_pred             HHHHHHHHHHHHHHh---CCCceEEE-EEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chH
Confidence                24555555542   11245444 4555  555676 45677899999999999999999999999755443  222


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      +...     +-.||     +-.++|+++||.
T Consensus       292 ~e~~-----gv~PD-----iv~~gKgl~gG~  312 (472)
T PRK08742        292 CEQA-----GVMPD-----LLCLSKGLTGGF  312 (472)
T ss_pred             HHhc-----CCCCC-----EEEEcccccCCC
Confidence            2111     12377     334589998884

>PRK07481 hypothetical protein; Provisional

Probab=98.59  E-value=6.3e-06  Score=82.32  Aligned_cols=198  Identities=15%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|++.+++.+.+.....  ...+..  -..+.+..+|+.+.+..+ +-..+.+++++++++|+..+++....      .
T Consensus        59 ~~p~v~~Ai~~ql~~~~~--~~~~~~--~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~  133 (449)
T PRK07481         59 NREEVKEAIVRQLDELEY--YSTFDG--TTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQ  133 (449)
T ss_pred             CCHHHHHHHHHHHHhccc--eecccc--cCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCC
Confidence            367899999888876431  111100  012445556666655432 11245899999999999999886531      0


Q ss_pred             C-CCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCC--CCCcC-CCHHHHHHHHH----HHHh-cC-CC
Q 018147          214 E-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDE--ATGWG-LETSEVKKQLE----AAKA-KG-IT  270 (360)
Q Consensus       214 ~-gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~--~~~~~-~d~~~L~~~i~----~~~~-~g-~~  270 (360)
                      + ..+|+...-.|.+...........             +..++...  ...|. -|.+.+++.+.    .... ++ .+
T Consensus       134 ~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~  213 (449)
T PRK07481        134 PERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDT  213 (449)
T ss_pred             CCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            2 256888888887754322222111             11121110  00122 24444433322    1111 12 24


Q ss_pred             ccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc
Q 018147          271 VRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~  348 (360)
                      +.+|+ ..| +.-.|.+ .+.+-+++|.++|+++|+++|.||+..+|...+.  ...+.     ...-.||     +-.+
T Consensus       214 iAAvi-iEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~-----~~gv~PD-----iv~~  280 (449)
T PRK07481        214 IAAFI-AEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS--WFGSR-----GWGVKPD-----IMCL  280 (449)
T ss_pred             EEEEE-EecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch--hhHhh-----hcCCCCC-----EEEE
Confidence            54454 455 4445664 4667799999999999999999999999644432  11111     1112367     3345


Q ss_pred             CcCcccc
Q 018147          349 SKGRYFH  355 (360)
Q Consensus       349 SK~~~g~  355 (360)
                      +|++++|
T Consensus       281 gKgl~gG  287 (449)
T PRK07481        281 AKGITSG  287 (449)
T ss_pred             eecccCC
Confidence            8998887

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.59  E-value=1.1e-06  Score=80.41  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=112.6

Q ss_pred             CCCCCCCC-cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcC-CCchHHHH------
Q 018147          159 ATGAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSA------  230 (360)
Q Consensus       159 ~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~-P~y~~~~~------  230 (360)
                      ...+|+.. -|-..|.+--|+-+    |.....-+.-+.+ +++||..++..+++ |||+.+... --|.....      
T Consensus        56 ~stGYGydD~GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~LR-pgDell~i~G~PYDTLeevIG~rg  129 (416)
T COG4100          56 GSTGYGYDDLGRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGILR-PGDELLYITGSPYDTLEEVIGLRG  129 (416)
T ss_pred             CCCCCCccccchhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhccC-CCCeEEEecCCcchhHHHHhccCC
Confidence            35556553 24444444444444    4221112333444 58999999999995 999987544 22333332      


Q ss_pred             ----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec-CCCCcccCCCHHHHHHHHHHHHHc--C
Q 018147          231 ----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKE--G  303 (360)
Q Consensus       231 ----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~-P~NPTG~~~~~~~l~~i~~la~~~--~  303 (360)
                          .++.+|.....+|+..++  .+|.+.+++++++      ++|+|.|.. ...-.--.++.+++++++++.++-  |
T Consensus       130 ~~~gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn  201 (416)
T COG4100         130 EGQGSLKDFGIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPN  201 (416)
T ss_pred             CCcccHHHhCcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCC
Confidence                345567888889998765  8999999999987      899998873 333333357788999999999985  7


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      +++++|.+|++|+-..++-         .++   -|   +..+|+-|.-+||+
T Consensus       202 ~ivFVDNCYGEFvE~~EPt---------~vG---aD---liAGSLIKNpGGgi  239 (416)
T COG4100         202 VIVFVDNCYGEFVEEKEPT---------HVG---AD---LIAGSLIKNPGGGI  239 (416)
T ss_pred             EEEEEeccchhhhhccCcc---------ccc---hh---hhccceeeCCCCce
Confidence            9999999999977554321         111   12   66788888777654

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.58  E-value=5e-06  Score=83.33  Aligned_cols=198  Identities=13%  Similarity=0.140  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~  213 (360)
                      --+|.+.+++.+.+..........|.     .+.+..+|+.+.+..  +...+.+++++++++|+..+++....     .
T Consensus        63 h~~p~v~~Ai~~ql~~l~~~~~~~~~-----~~~~~~lae~L~~~~--p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g  135 (466)
T PRK07030         63 HANPRINQRIKDQVDQLEHVILAGFS-----HEPVIELSERLVKIT--PPGLSRCFYADNGSSAIEVALKMSFHYWRNRG  135 (466)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhC--CCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhC
Confidence            34788999998888764320111222     234455666665432  22346899999999999999887521     1


Q ss_pred             --CCCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCC--CCcCC--------CHHHHHHHHHHHHhcC
Q 018147          214 --ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEA--TGWGL--------ETSEVKKQLEAAKAKG  268 (360)
Q Consensus       214 --~gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~--~~~~~--------d~~~L~~~i~~~~~~g  268 (360)
                        ...+|+...-.|.+........+..             +..+|....  ..++.        +++.+++.+..   .+
T Consensus       136 ~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~  212 (466)
T PRK07030        136 KPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HH  212 (466)
T ss_pred             CCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CC
Confidence              2356888888887654333222111             112221110  00111        24455666642   12


Q ss_pred             CCccEEEEecC--CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          269 ITVRALVVINP--GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       269 ~~~k~iil~~P--~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                      .++.+|+ ..|  +.-.|.+ .+.+-+++|.++|+++|+++|.||+..+|...+.  ...+..     .+-.||     +
T Consensus       213 ~~iAAvi-~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~--~~a~~~-----~gv~PD-----i  279 (466)
T PRK07030        213 DEIAAVI-VEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT--MFACEQ-----AGIRPD-----F  279 (466)
T ss_pred             CceEEEE-EecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc--chHHHh-----cCCCCC-----E
Confidence            2454554 445  4445664 4567899999999999999999999998644442  211111     112367     3


Q ss_pred             eccCcCccccc-ccc
Q 018147          346 QSVSKGRYFHF-FSK  359 (360)
Q Consensus       346 ~S~SK~~~g~~-RvG  359 (360)
                      -.++|+++||. -+|
T Consensus       280 v~~gKgl~gG~~Pi~  294 (466)
T PRK07030        280 LCLSKALTGGYLPLA  294 (466)
T ss_pred             EeeehhccCCcccce
Confidence            34589998883 443

>PRK07480 putative aminotransferase; Validated

Probab=98.58  E-value=2.7e-06  Score=85.02  Aligned_cols=197  Identities=15%  Similarity=0.152  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----C-
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S-  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~-  213 (360)
                      -+|.+++++.+.+.....  ...+  .....+.+..+|+.+.+..+  ...+.+++++++++|+..+++....     + 
T Consensus        67 ~~p~v~~Ai~~q~~~~~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~  140 (456)
T PRK07480         67 GRKELADAAARQMRELPY--YNTF--FKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKGK  140 (456)
T ss_pred             CCHHHHHHHHHHHHhcCC--cccc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            378899999988886432  1111  01123445556666655432  2246899999999999999886531     0 


Q ss_pred             C-CCEEEEcCCCchHHHHHHHHc-CCe------------EEEeecCC--CCCcCCC--------HHHHHHHHHHHHhcCC
Q 018147          214 E-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDE--ATGWGLE--------TSEVKKQLEAAKAKGI  269 (360)
Q Consensus       214 ~-gd~Vlv~~P~y~~~~~~~~~~-g~~------------~~~v~~~~--~~~~~~d--------~~~L~~~i~~~~~~g~  269 (360)
                      + ...|+...-.|.+........ |..            +..++...  ...+..+        .+.|++.+...  ...
T Consensus       141 ~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~  218 (456)
T PRK07480        141 PQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GAD  218 (456)
T ss_pred             CCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCC
Confidence            2 346887777777643222111 111            11111000  0000111        24444444321  112


Q ss_pred             CccEEEEecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc
Q 018147          270 TVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (360)
Q Consensus       270 ~~k~iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~  348 (360)
                      ++.+|++.-.+.-.|.+. +.+-+++|.++|++||+++|.||++.+|.-.+.  ...+..  .+   -.||     +-+|
T Consensus       219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~~--~g---v~PD-----iv~~  286 (456)
T PRK07480        219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE--WFGSQH--FG---IKPD-----LMTI  286 (456)
T ss_pred             cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--hhhhhh--cC---CCCC-----eeee
Confidence            454555442244456654 566799999999999999999999998633332  222111  11   2367     3467


Q ss_pred             CcCccccc
Q 018147          349 SKGRYFHF  356 (360)
Q Consensus       349 SK~~~g~~  356 (360)
                      +|+++||.
T Consensus       287 gK~l~gG~  294 (456)
T PRK07480        287 AKGLTSGY  294 (456)
T ss_pred             ehhhccCC
Confidence            99998874

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.57  E-value=8.4e-06  Score=81.58  Aligned_cols=215  Identities=14%  Similarity=0.047  Sum_probs=117.9

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGAS  200 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~  200 (360)
                      ...+||+..+     -.--+|++++++.+.+.....  .... .  -..+.+..+|+.+.+.....-.. ..++++++++
T Consensus        57 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~--~~~~-~--~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGs  131 (459)
T PRK06931         57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLP--LHTL-D--LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGA  131 (459)
T ss_pred             CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcc--cccc-c--cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcH
Confidence            4456676555     234478899999888865221  1111 0  12345566677776543211011 1246668889


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCCC--CCcC----CCHHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEA--TGWG----LETSEVKKQ  260 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~--~~~~----~d~~~L~~~  260 (360)
                      +|+..+++.... .....|+...-.|.+..........             .+..+|....  ..|.    -+.+.+++.
T Consensus       132 EAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (459)
T PRK06931        132 DAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYY  211 (459)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence            999998886532 1346788888888876544442211             1122222110  0011    123444333


Q ss_pred             HHHHHh----cCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          261 LEAAKA----KGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       261 i~~~~~----~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      +++...    ...++.+|| .-| +.-.|.+ .+.+-++++.++|+++|+++|.||+..+|.-.+.  ...+..     .
T Consensus       212 ~~~~~~~~~~~~~~iAAvI-~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~--~~a~~~-----~  283 (459)
T PRK06931        212 FENFIEDVESGVRKPAAVI-LEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK--MFAFEH-----A  283 (459)
T ss_pred             HHHHHHhhhcCCCceEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch--HHHhhh-----c
Confidence            333221    112354444 455 3334654 4677899999999999999999999999643332  211111     1


Q ss_pred             CCCCCceEEEEeccCcCcccccccc
Q 018147          335 YGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      .-.||     +-+++|++++|.-+|
T Consensus       284 gv~PD-----ivt~gK~l~gG~Pi~  303 (459)
T PRK06931        284 GIEPD-----IIVMSKAVGGGLPLA  303 (459)
T ss_pred             CCCCC-----EEEecccccCCccee
Confidence            12377     345699999886543

>PRK06105 aminotransferase; Provisional

Probab=98.57  E-value=3.1e-06  Score=84.75  Aligned_cols=208  Identities=16%  Similarity=0.116  Sum_probs=117.0

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|.+++++.+.+.+.+.  ...+.  ....+.+.++++.+.+...  -.-+.+++++++++
T Consensus        47 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~--~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGse  120 (460)
T PRK06105         47 GKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPF--YHTFS--HKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSE  120 (460)
T ss_pred             CCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCC--eeccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence            4456666544     223478899999998887432  11111  1122344456666655432  12368999999999


Q ss_pred             HHHHHHHHHcc-----C-C-CCEEEEcCCCchHHHHHHHHc-CCe------------EEEeecCCCCCcC----------
Q 018147          202 AVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEATGWG----------  251 (360)
Q Consensus       202 al~~~~~~l~~-----~-~-gd~Vlv~~P~y~~~~~~~~~~-g~~------------~~~v~~~~~~~~~----------  251 (360)
                      |+..+++....     . + ..+|+...-.|.+........ +..            +..++......+.          
T Consensus       121 Ave~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  200 (460)
T PRK06105        121 ANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFA  200 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHH
Confidence            99999987421     0 2 356888777777654322111 110            1111111000000          


Q ss_pred             -CCHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          252 -LETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       252 -~d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                       ...+++++.+...  ...++.+| |..| +.-.|.+ .+.+-+++|.++|++||+++|.||++.+|.-.+.  ...+..
T Consensus       201 ~~~~~~le~~~~~~--~~~~iAav-IvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~--~f~~~~  275 (460)
T PRK06105        201 TRLANELEALILAE--GPDTIAAF-IGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN--MFGCET  275 (460)
T ss_pred             HHHHHHHHHHHHHc--CCCceEEE-EEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch--hhhHHh
Confidence             0134566665421  11245444 4555 4445665 4777899999999999999999999988644442  222211


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                           .+-.||     +-.+||++++|
T Consensus       276 -----~~v~PD-----i~~~gK~lggG  292 (460)
T PRK06105        276 -----FGIKPD-----ILVMSKQLSSS  292 (460)
T ss_pred             -----cCCCCC-----eeeeecccccC
Confidence                 112367     34789999887

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.57  E-value=3.2e-06  Score=82.75  Aligned_cols=194  Identities=18%  Similarity=0.226  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------CC
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SE  214 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~~  214 (360)
                      .+++.+++.+++++.+........... ..+|-+.+++..    . +-+-++|++++|+++|+..+++....      .|
T Consensus        62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~a----P-~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p  135 (449)
T COG0161          62 RPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELA----P-EGGLDHVFFTDSGSEAVETALKMALQYWRARGQP  135 (449)
T ss_pred             CHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhC----C-CCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            677889999999887642122222222 344444444443    1 12257899999999999999987542      23


Q ss_pred             C-CEEEEcCCCchHHHHHHHHc-C-------------CeEEEeecCC---C---CCcC----CCHHHHHHHHHHHHhcCC
Q 018147          215 N-DGILCPIPQYPLYSASIALH-G-------------GTLVPYYLDE---A---TGWG----LETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       215 g-d~Vlv~~P~y~~~~~~~~~~-g-------------~~~~~v~~~~---~---~~~~----~d~~~L~~~i~~~~~~g~  269 (360)
                      + ..++.-...|.+-.-..-.. |             ..+..++...   .   +.+.    -..++|++.|..   .|+
T Consensus       136 ~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~---~g~  212 (449)
T COG0161         136 QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILE---HGP  212 (449)
T ss_pred             cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHh---cCc
Confidence            3 33777777776432111111 1             1111222111   1   1111    124555555554   243


Q ss_pred             CccEEEEecC--CCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEe
Q 018147          270 TVRALVVINP--GNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (360)
Q Consensus       270 ~~k~iil~~P--~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~  346 (360)
                      ..-+.+|..|  +--.|..++.. -|+++.++|++||+++|.||+-.+|-..+. .|.+     .. ..--||     +-
T Consensus       213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~-~FA~-----e~-~gi~PD-----i~  280 (449)
T COG0161         213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK-MFAC-----EH-AGIVPD-----IL  280 (449)
T ss_pred             ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch-hhhh-----hh-cCCCCC-----ee
Confidence            4445666677  44477766554 699999999999999999999999766654 1211     11 112377     45


Q ss_pred             ccCcCcccc
Q 018147          347 SVSKGRYFH  355 (360)
Q Consensus       347 S~SK~~~g~  355 (360)
                      +++|++++|
T Consensus       281 ~~aKGLT~G  289 (449)
T COG0161         281 CLAKGLTGG  289 (449)
T ss_pred             eeccccccc
Confidence            678888765

>PRK07036 hypothetical protein; Provisional

Probab=98.53  E-value=6.2e-06  Score=82.71  Aligned_cols=211  Identities=15%  Similarity=0.164  Sum_probs=116.5

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+     -.--+|.+.+++.+.+.....  ...+..  ...+.+..+|+.+.+..  +-..+.+++++++++
T Consensus        50 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~--~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGse  123 (466)
T PRK07036         50 GRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPY--YTPFGD--MTNAPAAELAAKLAELA--PGDLNHVFLTTGGST  123 (466)
T ss_pred             CCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcc--cccccc--cCCHHHHHHHHHHHHhC--CCCcCEEEEeCCchH
Confidence            4445665444     223378899999888876421  111210  11244556666665542  222468999999999


Q ss_pred             HHHHHHHHHcc-----C-C-CCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCC--CCCcCCC------
Q 018147          202 AVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE--ATGWGLE------  253 (360)
Q Consensus       202 al~~~~~~l~~-----~-~-gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~--~~~~~~d------  253 (360)
                      |+..+++....     + + ..+|+...-.|.+....+.....             .+..++...  ...++..      
T Consensus       124 Ave~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  203 (466)
T PRK07036        124 AVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCD  203 (466)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHH
Confidence            99999886521     1 1 35788888888765533222211             122222111  0011221      


Q ss_pred             --HHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       254 --~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                        .+.+++.+...  ...++.+|++.-.+.-.|.+. +.+-+++|.++|++||+++|.||+..+|.-.+.  ...+..  
T Consensus       204 ~~~~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~~~--  277 (466)
T PRK07036        204 FLVDEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH--FFASEA--  277 (466)
T ss_pred             HHHHHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch--hhhhhh--
Confidence              23344444321  112454555443344456654 667799999999999999999999988643332  111110  


Q ss_pred             HhhCCCCCCceEEEEeccCcCccccc
Q 018147          331 RSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                        .....||     +-+++|++++|.
T Consensus       278 --~~gv~PD-----ivt~gK~l~gG~  296 (466)
T PRK07036        278 --VFGIQPD-----IITFAKGLTSGY  296 (466)
T ss_pred             --hcCCCCC-----EEEEccccccCc
Confidence              1112367     346799998883

>PRK07678 aminotransferase; Validated

Probab=98.51  E-value=6.2e-06  Score=82.39  Aligned_cols=205  Identities=16%  Similarity=0.165  Sum_probs=114.0

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+     -.--+|++++++.+.+...... ...|.     .+....+|+.+.+..+   ..+.+++++++++
T Consensus        46 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~~~~-----~~~~~~lae~l~~~~~---~~~~v~f~~sGse  116 (451)
T PRK07678         46 GNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYF-PLTQS-----HEPAIKLAEKLNEWLG---GEYVIFFSNSGSE  116 (451)
T ss_pred             CCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcc-ccccC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCcHH
Confidence            3445555443     1233788999998888764320 11122     2234455666655433   1357999999999


Q ss_pred             HHHHHHHHHcc------CCC-CEEEEcCCCchHHHHHHHHc-CC------------eEEEeecCCC--CCcCC-----C-
Q 018147          202 AVHMMMQLLIR------SEN-DGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEA--TGWGL-----E-  253 (360)
Q Consensus       202 al~~~~~~l~~------~~g-d~Vlv~~P~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~~-----d-  253 (360)
                      |+..+++....      .+| .+|+...-.|.+....+... |.            .+..++....  ..|..     + 
T Consensus       117 A~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (451)
T PRK07678        117 ANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDL  196 (451)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHH
Confidence            99998887531      022 57888888887654433222 11            1112221110  00110     1 


Q ss_pred             --HHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          254 --TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       254 --~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                        ++.+++.++..  ...++.+|+ ..| +.-.|.+. +.+-++++.++|++||+++|.||+..+|...+.  ...+.. 
T Consensus       197 ~~~~~l~~~~~~~--~~~~iAAvi-~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~~~-  270 (451)
T PRK07678        197 ECVKEIDRVMTWE--LSETIAAVI-MEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK--AFGFMN-  270 (451)
T ss_pred             HHHHHHHHHHHhc--CCCceEEEE-EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch--hHHHHh-
Confidence              12244445421  122454444 455 43356554 567799999999999999999999998644442  211111 


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcccc
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                       -+   -.||     +-+++|++++|
T Consensus       271 -~g---v~PD-----ivt~gK~lggG  287 (451)
T PRK07678        271 -YG---VKPD-----IITMAKGITSA  287 (451)
T ss_pred             -cC---CCCC-----EEEeecccccC
Confidence             11   2367     23679999987

>PRK06149 hypothetical protein; Provisional

Probab=98.50  E-value=5.8e-06  Score=89.99  Aligned_cols=212  Identities=17%  Similarity=0.192  Sum_probs=117.9

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      +..+||+..+   -.--+|++++++.+.+.....  ...|..     +....+++.+.+..  +-..+.+++++++++|.
T Consensus       584 G~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~--~~~~~~-----~~~~elae~L~~~~--p~~~~~v~f~~SGsEA~  654 (972)
T PRK06149        584 GRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNT--NSRFHY-----AAVAEFSERLAALA--PDGLDTVFLVNSGSEAN  654 (972)
T ss_pred             CCEEEECCCCccccCCCCHHHHHHHHHHHHhccc--cccccC-----HHHHHHHHHHHHhC--CCCcCEEEEeCCchHHH
Confidence            4456666555   222578999999888876432  222321     23444555554432  11236899999999999


Q ss_pred             HHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC-------------eEEEeecCC--CCCcC-CC-----HHHHHHH
Q 018147          204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLDE--ATGWG-LE-----TSEVKKQ  260 (360)
Q Consensus       204 ~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~v~~~~--~~~~~-~d-----~~~L~~~  260 (360)
                      ..+++.... .....|+...-.|.+........ +.             .+..++...  ...|. .+     .+.+++.
T Consensus       655 e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  734 (972)
T PRK06149        655 DLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQ  734 (972)
T ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHH
Confidence            999984321 13456887777777544221111 10             011221111  01121 11     2455555


Q ss_pred             HHHHHhcCCCccEEEEecC--CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          261 LEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       261 i~~~~~~g~~~k~iil~~P--~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      ++.....+.++.+ +|..|  ++--....+.+-+++|.++|++||+++|.||+..+|.-.+. .+..+...  +   -.|
T Consensus       735 l~~~~~~~~~iAa-vI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~-~~~a~e~~--g---v~P  807 (972)
T PRK06149        735 LEELDASGRGLAG-FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGH-YFWGFEQQ--G---VVP  807 (972)
T ss_pred             HHHHhhcCCceEE-EEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCc-cchhhhhc--C---CCC
Confidence            5433222334544 44555  44333456677899999999999999999999988643332 12222111  1   126


Q ss_pred             CceEEEEeccCcCcccccccc
Q 018147          339 DISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      |  ++   +++|++++|.-+|
T Consensus       808 D--iv---t~gK~lg~G~Pl~  823 (972)
T PRK06149        808 D--II---TMAKGMGNGHPLG  823 (972)
T ss_pred             C--EE---EecccccCCeeeE
Confidence            7  22   7899999886544

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=98.50  E-value=2.5e-06  Score=80.83  Aligned_cols=188  Identities=12%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-C
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-S  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~  213 (360)
                      .-+|.+.+++.+.++..+. +.++-....|.    ..|.+.+|++.    +   ++..+++++ .--|....+..|.+ -
T Consensus       185 s~Hp~V~~A~~~tl~~hG~-GAGGTRNIsG~s~~hv~LE~eLA~LH----q---K~aALlFsS-CfVANDstLftLak~l  255 (570)
T KOG1360|consen  185 SRHPEVLDAMHDTLDRHGA-GAGGTRNISGHSKHHVRLEAELADLH----Q---KEAALLFSS-CFVANDSTLFTLAKKL  255 (570)
T ss_pred             cCChHHHHHHHHHHHHcCC-CcCCccccCCCCchhhhHHHHHHHHh----c---Ccceeeeee-eeeccchHHHHHHHHC
Confidence            4578899999999988754 44444444444    45666666665    2   122233322 22222222222211 2


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      ||-+|+-..-.+......++..++.-..+..       -|++.|++.++....  ..+|+|-+...+.-+|.+-+   ++
T Consensus       256 pgcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~--svPKivAFEtVhSM~Gavcp---le  323 (570)
T KOG1360|consen  256 PGCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCP---LE  323 (570)
T ss_pred             CCcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCC---HH
Confidence            8888888888888998888888876554432       278999999876322  25788888899999999999   99


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +|++++++||.+-++||++.--.|++...  .+... +++   .+.+ -|+-+++.|+|+.
T Consensus       324 elcDvah~yGAiTFlDEVHAVGlYG~rGa--Gvger-dGv---m~kv-DiIsGTLgKafGc  377 (570)
T KOG1360|consen  324 ELCDVAHKYGAITFLDEVHAVGLYGPRGA--GVGER-DGV---MHKV-DIISGTLGKAFGC  377 (570)
T ss_pred             HHHHHHHHhCceeeeehhhhhccccCCCC--Ccccc-CCc---chhh-hhcccchhhhccc
Confidence            99999999999999999998888875321  11000 110   0111 2667999998863

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.49  E-value=4.3e-06  Score=88.58  Aligned_cols=168  Identities=22%  Similarity=0.267  Sum_probs=112.4

Q ss_pred             CCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHH---HHHHHccC----CCCEEEEcCCCchHH
Q 018147          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHM---MMQLLIRS----ENDGILCPIPQYPLY  228 (360)
Q Consensus       160 ~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~-Ga~~al~~---~~~~l~~~----~gd~Vlv~~P~y~~~  228 (360)
                      .+.|.|   .+|..++...+.+++.+..|.+.    +-+-+ ++.++-..   +++.....    ..+.|+++.-.|...
T Consensus       529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN  604 (954)
T PRK12566        529 LHPFAPREQAEGYRAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN  604 (954)
T ss_pred             CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence            467888   88999999999999998877543    33433 23333322   33332111    235688888777443


Q ss_pred             HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ...+...|.+++.+++++++  .+|+++|++.+++.   ..++.+|++++|++-.  ++ .+++++|+++|+++|.++++
T Consensus       605 pasa~~~GieVv~Vp~D~~G--~iDle~L~a~I~~~---~~~laaVmiT~Pnt~G--v~-e~~V~eI~~iah~~Galv~v  676 (954)
T PRK12566        605 PASAQMAGMRVVIVECDPDG--NVDLDDLKAKAAAA---GDRLSCLMITYPSTHG--VY-EEGIREICEVVHQHGGQVYM  676 (954)
T ss_pred             HHHHHHCCCEEEEeccCCCC--CcCHHHHHHHhhcc---CCCEEEEEEEecCcCc--ee-cchHHHHHHHHHHcCCEEEE
Confidence            44477789999999998653  79999999999732   1267778888887644  33 45699999999999999999


Q ss_pred             ccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       309 DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      |.+...- ...   ....    .+++   -|   |++.++-|.|+
T Consensus       677 DgA~~~a-~~~---l~~P----g~~G---AD---i~~~s~HKtf~  707 (954)
T PRK12566        677 DGANLNA-QVG---LARP----ADIG---AD---VSHMNLHKTFC  707 (954)
T ss_pred             EeeChhh-ccC---CCCh----hhcC---CC---EEEecCCcccC
Confidence            9998521 111   1111    1222   24   77888889775

>PRK06148 hypothetical protein; Provisional

Probab=98.48  E-value=4.3e-06  Score=91.17  Aligned_cols=213  Identities=15%  Similarity=0.075  Sum_probs=120.0

Q ss_pred             CCCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          126 DHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       126 ~~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      +...+||+..+   -.--+|.+++++.+.+.....  ...|.     .+....+|+.+.+...  -.-+.+++++++++|
T Consensus       622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~--~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA  692 (1013)
T PRK06148        622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNT--NTRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSEA  692 (1013)
T ss_pred             CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCC--cCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHH
Confidence            34556666544   334488899999988876432  22332     2334455555554332  123678999999999


Q ss_pred             HHHHHHHHccC-CCCEEEEcCCCchHHHHHHHHc-C------------CeEEEeecC--CCCCcCC-C-------HHHHH
Q 018147          203 VHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-G------------GTLVPYYLD--EATGWGL-E-------TSEVK  258 (360)
Q Consensus       203 l~~~~~~l~~~-~gd~Vlv~~P~y~~~~~~~~~~-g------------~~~~~v~~~--~~~~~~~-d-------~~~L~  258 (360)
                      ...+++....- ...+|+...-.|.+........ +            ..+..++..  ....|.. +       .+.++
T Consensus       693 ~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  772 (1013)
T PRK06148        693 NSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVA  772 (1013)
T ss_pred             HHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHH
Confidence            99998876421 3457888888777654321111 1            011111110  0011221 1       13455


Q ss_pred             HHHHHHHhcCCCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          259 KQLEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +.++.....+.++.+|+ ..| ..--|. ..+++-++++.++|+++|+++|.||+..+|.-.+. .+..+...  +   -
T Consensus       773 ~~i~~~~~~~~~iAAvI-~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~-~~~a~e~~--g---v  845 (1013)
T PRK06148        773 EQIAAMAAKGRGPAFFI-AESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS-HWWAFETQ--G---V  845 (1013)
T ss_pred             HHHHhhhccCCceEEEE-EcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC-cchhhhhc--C---C
Confidence            55543222233454554 545 322344 45677899999999999999999999998643332 12222111  1   2


Q ss_pred             CCCceEEEEeccCcCcccccccc
Q 018147          337 EKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      .||     +-+++|++++|.-+|
T Consensus       846 ~PD-----ivt~gK~lggG~Plg  863 (1013)
T PRK06148        846 VPD-----IVTMGKPIGNGHPMG  863 (1013)
T ss_pred             Ccc-----eeeecccccCCcceE
Confidence            367     356699999886554

>PRK07483 hypothetical protein; Provisional

Probab=98.48  E-value=6.4e-06  Score=82.06  Aligned_cols=196  Identities=15%  Similarity=0.148  Sum_probs=108.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC-----
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~-----  213 (360)
                      --+|.+++++.+.++.........|.     .+....+|+.+.+...  -..+.+++++++++|+..+++....-     
T Consensus        46 h~~p~v~~av~~ql~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g  118 (443)
T PRK07483         46 HSHPRVIAAIHAQIDRLAYAHTSFFT-----TEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIG  118 (443)
T ss_pred             CCCHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcC
Confidence            34788999999888864310111121     2344556666655322  12368999999999999988865310     


Q ss_pred             -CC-CEEEEcCCCchHHHHHHHH-cCCe------------EEEeecCC-CCC-c-CCC--------HHHHHHHHHHHHhc
Q 018147          214 -EN-DGILCPIPQYPLYSASIAL-HGGT------------LVPYYLDE-ATG-W-GLE--------TSEVKKQLEAAKAK  267 (360)
Q Consensus       214 -~g-d~Vlv~~P~y~~~~~~~~~-~g~~------------~~~v~~~~-~~~-~-~~d--------~~~L~~~i~~~~~~  267 (360)
                       +| .+|+...-.|.+....... .|..            +..++... .+. + ..+        ++++++.+...  .
T Consensus       119 ~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~  196 (443)
T PRK07483        119 QPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILEL--G  196 (443)
T ss_pred             CCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--C
Confidence             22 4688878777765432222 1110            11121110 000 0 001        24455544321  1


Q ss_pred             CCCccEEEEecC-CC-Cccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          268 GITVRALVVINP-GN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       268 g~~~k~iil~~P-~N-PTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                      ..++.+|+ ..| +- -.|. ..+.+-+++|.++|++||+++|.||+..+|.-.+.  ...+..     ..-.||     
T Consensus       197 ~~~iAAvi-vEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~a~~~-----~gv~PD-----  263 (443)
T PRK07483        197 PDTVAAFV-AETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT--LFACEE-----DGVAPD-----  263 (443)
T ss_pred             CCceEEEE-EeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH--HHHHhh-----cCCCCC-----
Confidence            12454454 455 32 2254 45677899999999999999999999998643332  221111     112367     


Q ss_pred             EeccCcCccccc
Q 018147          345 FQSVSKGRYFHF  356 (360)
Q Consensus       345 ~~S~SK~~~g~~  356 (360)
                      +-.++|++++|.
T Consensus       264 iv~~gK~l~gG~  275 (443)
T PRK07483        264 LVTIAKGLGAGY  275 (443)
T ss_pred             eeeehhhhccCc
Confidence            344589998884

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.44  E-value=3.4e-06  Score=80.18  Aligned_cols=187  Identities=13%  Similarity=0.048  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      .++.|+++.-..+.+...   .+..-|+-..-..++.+...+..++.+|  .+--+|--.+|+. |...++.+|+ .|||
T Consensus        38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhSGs~-AN~av~~All-~pGD  113 (413)
T COG0112          38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHSGSQ-ANQAVYLALL-QPGD  113 (413)
T ss_pred             CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCCchH-HHHHHHHHHc-CCCC
Confidence            477788886655544321   1233455555455666666666666666  3345666677765 5556667777 4999


Q ss_pred             EEEEcCCCchHHHHHH---HHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          217 GILCPIPQYPLYSASI---ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~---~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      +|+-.+-.+.++..--   ...|  .+.+.|+++.+ +..+|.|++++...+.     ++|+|+.-.-..|  ..+   +
T Consensus       114 timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~--r~i---d  182 (413)
T COG0112         114 TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKLIIAGGSAYS--RPI---D  182 (413)
T ss_pred             eEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCCEEEECccccc--ccc---C
Confidence            9998887766554211   1122  46778888865 3589999999999886     8999886533322  123   4


Q ss_pred             HHHHHHHHHHcCCEEEEccCC-CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          292 QRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++++.++|.+-|.++++|.+| .+++-.+.  +++-...        .|   |+..|.-|+|.|
T Consensus       183 ~~~~reIad~VGA~L~~DmAHiaGLVA~G~--~p~P~~~--------Ad---vVTtTTHKTlrG  233 (413)
T COG0112         183 FKRFREIADEVGAYLMVDMAHVAGLIAGGV--HPNPLPH--------AD---VVTTTTHKTLRG  233 (413)
T ss_pred             HHHHHHHHHHhCceEEehHHHHHHHHhccc--CCCCCCc--------cc---eEeCCcccCCCC
Confidence            889999999999999999998 44554443  4332222        23   778999998865

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.40  E-value=4.4e-06  Score=83.00  Aligned_cols=184  Identities=12%  Similarity=0.090  Sum_probs=104.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~  217 (360)
                      --+|.+++++.+.++...     .|...   ...+..+|+.+.+...   ..+.+++++++++|+..+++....-.| ..
T Consensus        64 h~~p~v~~Ai~~q~~~~~-----~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~  132 (431)
T PRK06209         64 HAYPPVVEAVREALQDGC-----NFTRP---SAIELDAAESFLELID---GADMVKFCKNGSDATSAAVRLARAYTGRDL  132 (431)
T ss_pred             CCCHHHHHHHHHHHHhCc-----CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecCHHHHHHHHHHHHHHHhCCCe
Confidence            347889999999888642     12221   2223344555544321   136899999999999999986532133 34


Q ss_pred             EEEc-CCCchHHHHHHHHcCCeE-----------EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          218 ILCP-IPQYPLYSASIALHGGTL-----------VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       218 Vlv~-~P~y~~~~~~~~~~g~~~-----------~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      |+.. .-.|..+....  +|...           ..+.+.     .-|++.|++.++..   ..++ +.++..|-  .|.
T Consensus       133 i~~~~~~~~h~~~~~~--~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~---~~~~-aavi~Epv--~g~  199 (431)
T PRK06209        133 VARCADHPFFSTDDWF--IGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDH---PGRI-ACVILEPA--TAD  199 (431)
T ss_pred             EEEeccCccccccccc--cccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhC---CCCE-EEEEEccc--cCC
Confidence            5443 22222111000  11110           001111     12789999888642   1134 44555663  344


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      ..+.+.+++|.++|++||+++|+||++.++.+..    ..+... -++   .||     +.+++|++++|+-+|
T Consensus       200 ~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~----~g~~~~-~gv---~PD-----i~t~gK~lggG~p~~  260 (431)
T PRK06209        200 EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM----RGAQKL-YGI---VPD-----LSCFGKALGNGFAVS  260 (431)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc----chhhHH-hCC---Ccc-----eeeehhhhcCCcccE
Confidence            6778899999999999999999999998763321    011111 111   256     366899998876444

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.37  E-value=4.4e-06  Score=80.14  Aligned_cols=142  Identities=21%  Similarity=0.293  Sum_probs=108.1

Q ss_pred             CCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEc--CChHH---HHHHHHHHHccCCC----CEEEEcCCCchH
Q 018147          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLT--DGASP---AVHMMMQLLIRSEN----DGILCPIPQYPL  227 (360)
Q Consensus       160 ~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t--~Ga~~---al~~~~~~l~~~~g----d~Vlv~~P~y~~  227 (360)
                      .+.|.|   .+|..++...+.+||.+.-|+    +.|.+.  +|+..   ++ ++++.+-...|    +.|++|+-.+..
T Consensus        95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGl-l~Ir~YHe~rG~~~R~~~LIP~SAHGT  169 (496)
T COG1003          95 IHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRNICLIPDSAHGT  169 (496)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHH-HHHHHHHHHcCCCcCcEEEeeccccCC
Confidence            445555   568899999999999887563    445543  34432   33 33444432233    679999999998


Q ss_pred             HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      -...+.++|.+++.|++++++  .+|+++|++++.+      ++.++.|+||+. .| ++ ++++.+|+++..++|-.|-
T Consensus       170 NPASAam~G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnPsT-~G-vF-E~~I~ei~~ivH~~Gg~vY  238 (496)
T COG1003         170 NPASAAMAGFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNPST-LG-VF-EEDIREICEIVHEAGGQVY  238 (496)
T ss_pred             ChhhHhhcCceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccCcc-cc-cc-hhhHHHHHHHHHHcCCEEE
Confidence            888899999999999999875  7899999999987      899999999983 24 33 5789999999999999999


Q ss_pred             EccCCCCCcc
Q 018147          308 ADEVYQENVY  317 (360)
Q Consensus       308 ~DeaY~~~~~  317 (360)
                      .|.+--.-+.
T Consensus       239 ~DGANlNA~v  248 (496)
T COG1003         239 YDGANLNAIV  248 (496)
T ss_pred             ecCcchhhhh
Confidence            9988655333

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.35  E-value=5.2e-05  Score=75.82  Aligned_cols=186  Identities=15%  Similarity=0.075  Sum_probs=103.4

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHH-HHc-CCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCC
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQI-LDQ-IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG  198 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~-l~~-~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~G  198 (360)
                      +...+||+..+     -.--+|.+++++.+. ... ...  ...|.... ..++-+.+++.+.+..  +-.-+.++++++
T Consensus        56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~--~~~~~~~~-~~~la~~l~~~l~~~~--p~~~~~v~f~~S  130 (464)
T TIGR00699        56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLIN--RPALGNFP-SKDWAKILKEGILKVA--PKGQDQVWTGMS  130 (464)
T ss_pred             CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcc--cccCCcHH-HHHHHHHHHHhHHhhC--CCCcCEEEEeCC
Confidence            35567777665     234588899998863 232 111  11222211 2233333333222221  112368999999


Q ss_pred             hHHHHHHHHHHHcc-------C------------------C---CCEEEEcCCCchHHHHHHHHc-CCe-----------
Q 018147          199 ASPAVHMMMQLLIR-------S------------------E---NDGILCPIPQYPLYSASIALH-GGT-----------  238 (360)
Q Consensus       199 a~~al~~~~~~l~~-------~------------------~---gd~Vlv~~P~y~~~~~~~~~~-g~~-----------  238 (360)
                      +++|+..+++....       .                  +   ...|+...-+|.+........ |..           
T Consensus       131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~  210 (464)
T TIGR00699       131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD  210 (464)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence            99999999987621       0                  1   126888888887654432222 211           


Q ss_pred             EEEeecCCC-CCcC-----------CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC-CHHHHHHHHHHHHHcCCE
Q 018147          239 LVPYYLDEA-TGWG-----------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLV  305 (360)
Q Consensus       239 ~~~v~~~~~-~~~~-----------~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~  305 (360)
                      +..+|.... ..+.           -+++.+++.+...   +.++.+|++.-...-.|.+. +.+-+++|.++|++||++
T Consensus       211 ~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~l  287 (464)
T TIGR00699       211 WPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVA  287 (464)
T ss_pred             ceecCCCCcccccccccccchhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            011111100 0000           1345566666431   12455555443344457766 677899999999999999


Q ss_pred             EEEccCCCCCccCC
Q 018147          306 LLADEVYQENVYVP  319 (360)
Q Consensus       306 lI~DeaY~~~~~~~  319 (360)
                      +|+||+..++...+
T Consensus       288 LI~DEV~tGfGrtG  301 (464)
T TIGR00699       288 FIVDEVQTGVGATG  301 (464)
T ss_pred             EEEeeeeeCCCCCc
Confidence            99999998864433

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.32  E-value=6.1e-06  Score=80.06  Aligned_cols=153  Identities=11%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcCcHHHHHHHHHHHHhhcCCCCC-CCCEEEc-CChHHHHHHHHH
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPAD-PNDIFLT-DGASPAVHMMMQ  208 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~-~~~I~~t-~Ga~~al~~~~~  208 (360)
                      |..||...|+++++++........  ....+.+  ..-+.+.|+.+++++    |  ++ ..+|+++ +++|.+++.++.
T Consensus         7 f~pGP~~~~~~v~~a~~~~~~~~~--~~~hr~~~f~~~~~~~r~~l~~l~----~--~~~~~~v~f~~gs~T~a~~~~~~   78 (361)
T TIGR01366         7 FGSGPSKVRLEQLQALTTTAASLF--GTSHRQAPVKNLVGRVREGLAELF----S--LPDGYEVILGNGGATAFWDAATF   78 (361)
T ss_pred             ccCCCcCCCHHHHHHHHhcCcccc--ccCcCChHHHHHHHHHHHHHHHHh----C--CCCCceEEEECCchhHHHHHHHH
Confidence            345566789999888653211110  0111222  223556677777776    3  33 3478886 559999999999


Q ss_pred             HHccCCCCEEEEcCCCch-HHHHHHHHc--CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          209 LLIRSENDGILCPIPQYP-LYSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~-~~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      .++. + +.+++..-.|. .+...++.+  +.++..++.+...  .++.+     +.      +++++|.+++-.|.||.
T Consensus        79 ~l~~-~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~-----~~------~~~~lV~~~h~et~tG~  143 (361)
T TIGR01366        79 GLIE-K-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGS--APEPQ-----AD------PGVDVIAWAHNETSTGV  143 (361)
T ss_pred             hccc-c-cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCC--CCCCc-----cC------CCCCEEEEcccCCccce
Confidence            9873 3 34344444454 344444442  2356666654321  23321     22      27999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +.+   +++|   ++++|+++|+|.+-.-
T Consensus       144 ~~p---i~~I---~~~~g~~~iVDavqs~  166 (361)
T TIGR01366       144 AVP---VRRP---EGSDDALVVIDATSGA  166 (361)
T ss_pred             ecc---cccc---cccCCCeEEEEcCccc
Confidence            999   5555   4789999999998765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.21  E-value=0.00013  Score=70.23  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=126.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHH-HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD-TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~-~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      .+.+++++++.+.+...-.  . .|.-..|...-|- .+++.+   .| -...+.++++++.+.|+..++.++..  +.+
T Consensus        38 ~~~~e~iea~~~~~~~~v~--L-e~~l~~g~~~~R~~~~~~~~---~~-~~~aea~~ivnnn~aAVll~~~al~~--~~E  108 (395)
T COG1921          38 LYSPEAIEAMKEAMRAPVE--L-ETDLKTGKRGARLTELAELL---CG-LTGAEAAAIVNNNAAAVLLTLNALAE--GKE  108 (395)
T ss_pred             cCCHHHHHHHHHHhcccce--e-eeecccchhhHHHHHHHHHH---hc-ccchhheeeECCcHHHHHHHHhhhcc--CCe
Confidence            4588899988887776432  3 4444443333332 333333   22 23467899999999999999999873  444


Q ss_pred             EEEcC-----CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC-CcccCCCHHH
Q 018147          218 ILCPI-----PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEEN  291 (360)
Q Consensus       218 Vlv~~-----P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N-PTG~~~~~~~  291 (360)
                      |++.-     +..++..+.++..|++++.+--..    .....+++.+|.+      ++++++-.+-+| +--..++   
T Consensus       109 vVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne------~ta~llkV~s~~~~f~~~l~---  175 (395)
T COG1921         109 VVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINE------NTALLLKVHSSNYGFTGMLS---  175 (395)
T ss_pred             EEEEccccccCCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhcc------CCeeEEEEeecccccccccc---
Confidence            44332     577899999999999999985432    3578899999988      788776665444 3222334   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc---ccccc
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF---HFFSK  359 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g---~~RvG  359 (360)
                      .++++++|+++|+++++|.+-+..+-.    .+.+..++. ++   .|   +++.|--|.++|   |+-+|
T Consensus       176 ~~~l~~ia~~~~lpvivD~aSg~~v~~----e~~l~~~la-~G---aD---LV~~SgdKllgGPqaGii~G  235 (395)
T COG1921         176 EEELVEIAHEKGLPVIVDLASGALVDK----EPDLREALA-LG---AD---LVSFSGDKLLGGPQAGIIVG  235 (395)
T ss_pred             HHHHHHHHHHcCCCEEEecCCcccccc----ccchhHHHh-cC---CC---EEEEecchhcCCCccceEec
Confidence            677899999999999999998776541    223333332 22   34   778899998875   55544

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.18  E-value=0.00011  Score=78.10  Aligned_cols=209  Identities=15%  Similarity=0.130  Sum_probs=118.1

Q ss_pred             CccccCcc----CCC--CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          129 SILDRSET----QGL--FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       129 ~~l~~~~~----~~~--~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      .++|...+    ..+  -.+++.+++.+++.....  ...  ... ..+-...+|+.+.+.-+- -..+.|++++++++|
T Consensus       366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~h--v~~--~~~-~hepa~~LAe~L~~~~~~-~~l~rVffs~sGSeA  439 (817)
T PLN02974        366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGH--VMF--PEN-VHEPALRAAELLLGGPGK-GWASRVFFSDNGSTA  439 (817)
T ss_pred             eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCc--ccc--Ccc-CCHHHHHHHHHHHhccCC-CCCCEEEECCchHHH
Confidence            47777666    223  489999999998887532  111  111 223445566666542110 013589999999999


Q ss_pred             HHHHHHHHcc------C--------------CCCEEEEcCCCchHHHHHHHHcCCe---------E------EEe--ec-
Q 018147          203 VHMMMQLLIR------S--------------ENDGILCPIPQYPLYSASIALHGGT---------L------VPY--YL-  244 (360)
Q Consensus       203 l~~~~~~l~~------~--------------~gd~Vlv~~P~y~~~~~~~~~~g~~---------~------~~v--~~-  244 (360)
                      +..+++...+      +              ...+|+.....|.+-...+...+..         .      ..+  |. 
T Consensus       440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~  519 (817)
T PLN02974        440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV  519 (817)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence            9998886521      1              1345888888887533222222110         0      001  10 


Q ss_pred             -------------CC-------CCCcC-----CC------------HHHHHHHHHHHH--hcCCCccEEEEecC--CCCc
Q 018147          245 -------------DE-------ATGWG-----LE------------TSEVKKQLEAAK--AKGITVRALVVINP--GNPT  283 (360)
Q Consensus       245 -------------~~-------~~~~~-----~d------------~~~L~~~i~~~~--~~g~~~k~iil~~P--~NPT  283 (360)
                                   ..       +..|.     .+            .+.+++.|++..  ..+.++. .+|..|  +.--
T Consensus       520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iA-AvI~EPviqGaG  598 (817)
T PLN02974        520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIA-ALIIEPVLHGAG  598 (817)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEE-EEEEeccccCCC
Confidence                         00       00010     00            134555554311  1123454 445555  5666


Q ss_pred             ccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          284 GQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       284 G~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      |.++ +.+-+++|.++|++||+++|.||+..+|.-.+.  .....     ..+..||     +-.++|+++||.
T Consensus       599 Gmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~--~fa~e-----~~gv~PD-----Ii~~gKgLtgG~  660 (817)
T PLN02974        599 GMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV--ESAWE-----LLGCKPD-----IACYAKLLTGGL  660 (817)
T ss_pred             CcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc--hhhHH-----hcCCCCC-----EEeecccccCCC
Confidence            7765 567799999999999999999999999755553  22211     1122377     456789999883

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.18  E-value=8.7e-05  Score=74.02  Aligned_cols=183  Identities=12%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             CCCccccCcc-----CCCCCHHHHH--HHHHHHHcCCCC--CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC
Q 018147          127 HPSILDRSET-----QGLFSADSIE--RAWQILDQIPGR--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD  197 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~--~~~~~l~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~  197 (360)
                      ...+||+..+     -.--+|.+++  ++.+.+......  ....|.     .+....+++.+.+..+ +-..+.+++++
T Consensus        44 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~-----~~~~~~la~~l~~~~~-p~~~~~v~f~~  117 (443)
T PRK08297         44 GRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVY-----TVEMARFVDTFARVLG-DPELPHLFFVD  117 (443)
T ss_pred             CCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcC-----CHHHHHHHHHHHhhcC-CCCCCEEEEeC
Confidence            3456666544     2344778888  888777653210  011122     1233334444444321 11246899999


Q ss_pred             ChHHHHHHHHHHHcc---------C---C-CCEEEEcCCCchHHHHHHHHc-CCeEE---EeecC-------CCCCc---
Q 018147          198 GASPAVHMMMQLLIR---------S---E-NDGILCPIPQYPLYSASIALH-GGTLV---PYYLD-------EATGW---  250 (360)
Q Consensus       198 Ga~~al~~~~~~l~~---------~---~-gd~Vlv~~P~y~~~~~~~~~~-g~~~~---~v~~~-------~~~~~---  250 (360)
                      ++++|+..+++....         +   + ..+|+...-.|.+....+... |....   .++..       +...+   
T Consensus       118 SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (443)
T PRK08297        118 GGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLP  197 (443)
T ss_pred             chHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCc
Confidence            999999999987621         1   1 256888888888665433322 21110   00100       00000   


Q ss_pred             --C---C------CHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          251 --G---L------ETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       251 --~---~------d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                        .   .      +++++++.+...   ..++.+|+ ..| ..--|.+ .+.+.+++|.++|++||+++|.||++.+|..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~i~~~---~~~iAavI-~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGR  273 (443)
T PRK08297        198 GEDLEEVEALEAEALAQARAAFERH---PHDIACFI-AEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL  273 (443)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhC---CCcEEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence              0   0      234444555421   12455555 455 3333543 6778899999999999999999999998644


Q ss_pred             CC
Q 018147          318 VP  319 (360)
Q Consensus       318 ~~  319 (360)
                      .+
T Consensus       274 tG  275 (443)
T PRK08297        274 TG  275 (443)
T ss_pred             cc
Confidence            43

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.14  E-value=0.00012  Score=70.17  Aligned_cols=150  Identities=17%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCC----------CEEEEc-CCCchH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEN----------DGILCP-IPQYPL  227 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~g----------d~Vlv~-~P~y~~  227 (360)
                      ...|.-..+.--..+.+-....+..||....|.|+--.|+...+..+..+--+ -|+          +-|+.. .-+|.+
T Consensus       130 ~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS  209 (510)
T KOG0629|consen  130 MFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS  209 (510)
T ss_pred             CceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh
Confidence            55565555555555666666666678887767888777888877776655321 122          335544 467778


Q ss_pred             HHHHHHHcC---CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCC
Q 018147          228 YSASIALHG---GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (360)
Q Consensus       228 ~~~~~~~~g---~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i  304 (360)
                      ...+++.+|   -.++.|+.++.+  .+++++||+.|.+++++|..+-.|-.+--...-|+.   +++..|+++|++|++
T Consensus       210 i~kaAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~l  284 (510)
T KOG0629|consen  210 IKKAAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKL  284 (510)
T ss_pred             HHHHHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCE
Confidence            888888888   678888888775  799999999999988777544333322334455665   459999999999999


Q ss_pred             EEEEccCCCC
Q 018147          305 VLLADEVYQE  314 (360)
Q Consensus       305 ~lI~DeaY~~  314 (360)
                      |+.+|.||++
T Consensus       285 WmHvDAAwGG  294 (510)
T KOG0629|consen  285 WMHVDAAWGG  294 (510)
T ss_pred             EEEeeccccc
Confidence            9999999988

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.13  E-value=0.0001  Score=70.40  Aligned_cols=209  Identities=13%  Similarity=0.161  Sum_probs=120.8

Q ss_pred             CCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      .+++|+.+.     .....|++.+++.+....... ....|-... .-++.+.+.+.+    +-+ .++.|++++++|+|
T Consensus        56 ~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~h-s~~~~~t~e-av~l~~~l~~~~----~~~-~~~rvff~nsGTeA  128 (433)
T KOG1401|consen   56 KEYIDFTSSWAVTILGHANPEVARALAEQAKKLGH-SSNGYFTLE-AVELEEVLSAVL----GKG-SAERVFFCNSGTEA  128 (433)
T ss_pred             ceeeeeccceeccccCCCCHHHHHHHHHHHhhhee-ccCccccHH-HHHHHHHHHhcc----cCC-CccEEEEecCCcHH
Confidence            345555444     334478888888877776532 122222211 223333333332    212 78899999999999


Q ss_pred             HHHHHHHHcc-----CCCC--EEEEcCCCchHH-HHHHHHcCCeEEEeecC---CCC-Cc-CCCHHHHHHHHHHHHhcCC
Q 018147          203 VHMMMQLLIR-----SEND--GILCPIPQYPLY-SASIALHGGTLVPYYLD---EAT-GW-GLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       203 l~~~~~~l~~-----~~gd--~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~---~~~-~~-~~d~~~L~~~i~~~~~~g~  269 (360)
                      ...++....+     .+-+  .|+....+|.+- ..++...+......|.+   ++- .. --|...+++.++.+.  | 
T Consensus       129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~--~-  205 (433)
T KOG1401|consen  129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK--G-  205 (433)
T ss_pred             HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC--C-
Confidence            9999887542     1112  377777677643 33333333222222221   110 00 126889999888741  1 


Q ss_pred             CccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEec
Q 018147          270 TVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS  347 (360)
Q Consensus       270 ~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S  347 (360)
                      .+.+|| ..| +---|.+. +++.+..|.+.|+++++++|.||+..+|...+..  .. .+++    ..-||     +-+
T Consensus       206 ~IaAVI-vEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~--~a-~e~~----~~~PD-----I~t  272 (433)
T KOG1401|consen  206 EIAAVI-VEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYG--WA-QEYF----GVTPD-----ITT  272 (433)
T ss_pred             ceEEEE-EecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchH--HH-HHHh----CcCCc-----cee
Confidence            244454 455 44444443 4678999999999999999999999986655431  11 1111    12367     577


Q ss_pred             cCcCcccccccc
Q 018147          348 VSKGRYFHFFSK  359 (360)
Q Consensus       348 ~SK~~~g~~RvG  359 (360)
                      +.|.++||+-+|
T Consensus       273 ~aK~L~gGlPig  284 (433)
T KOG1401|consen  273 VAKPLGGGLPIG  284 (433)
T ss_pred             ehhhccCCceeE
Confidence            889999998765

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.11  E-value=3.1e-05  Score=83.40  Aligned_cols=141  Identities=14%  Similarity=0.073  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCC--cC----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHS--QG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G----~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      .+|+.+++.+.+...-..  ..+.|.+.  +|    +.++++.++++.      +++++++.++.|+|.+.+.++.++..
T Consensus       116 ~~P~~v~~~i~~~~~~~T--aytPYqaEisQG~lqal~~~Qt~ia~Lt------G~~~anaSL~d~aTAaaea~~~a~~~  187 (993)
T PLN02414        116 HVPPVILRNILENPGWYT--QYTPYQAEIAQGRLESLLNYQTMITDLT------GLPMSNASLLDEGTAAAEAMAMCNNI  187 (993)
T ss_pred             cCCHHHHHHHHhChHHHh--hcCCCchHHHHHHHHHHHHHHHHHHHHh------CCChhhEeecCChHHHHHHHHHHHhc
Confidence            356666677655433211  24455543  45    445566666665      57899999999999999988777643


Q ss_pred             CC--CCEEEEcCCCchHHHHHHH----HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          213 SE--NDGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       213 ~~--gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      .+  +|+|++++-.|+.+...++    ..|++++.++++..     +      ...+      .+-.+++.+|+ -+|.+
T Consensus       188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~------~v~~vlvq~P~-~~G~v  249 (993)
T PLN02414        188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSG------DVCGVLVQYPA-TDGEV  249 (993)
T ss_pred             ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccC------ceEEEEEecCC-CCeEE
Confidence            33  4789999999998766554    45899998876431     1      0011      24344444554 48999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEE
Q 018147          287 LAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      .+   +++|+++|+++|+++++
T Consensus       250 ~d---v~~I~~~ah~~GaL~iV  268 (993)
T PLN02414        250 LD---YAEFVKNAHANGVKVVM  268 (993)
T ss_pred             cC---HHHHHHHHHHcCCEEEE
Confidence            87   99999999999999998

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.04  E-value=0.00039  Score=69.12  Aligned_cols=186  Identities=12%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             CCCccccCcc-----CCCCCHHHH--HHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 018147          127 HPSILDRSET-----QGLFSADSI--ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA  199 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~--~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga  199 (360)
                      ...+||+..+     -.--+|.++  +++.+.+..... ....... . .......+++.+.+..+ +-..+.+++++++
T Consensus        37 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~-~~~~~~~-~-~~~~~~~l~~~l~~~~~-~~~~~~v~f~~sG  112 (431)
T TIGR03251        37 GRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAV-NKPSNSD-V-YTVAMARFVDTFARVLG-DPALPHLFFIEGG  112 (431)
T ss_pred             CCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhh-cccccCC-C-CCHHHHHHHHHHHHhcC-CCCcCEEEEeCCc
Confidence            4456666444     223467788  777777765320 0001101 1 12222334444433211 1124689999999


Q ss_pred             HHHHHHHHHHHcc---------C-C---CCEEEEcCCCchHHHHHHHH-cCCe-EE--EeecC-------C-------CC
Q 018147          200 SPAVHMMMQLLIR---------S-E---NDGILCPIPQYPLYSASIAL-HGGT-LV--PYYLD-------E-------AT  248 (360)
Q Consensus       200 ~~al~~~~~~l~~---------~-~---gd~Vlv~~P~y~~~~~~~~~-~g~~-~~--~v~~~-------~-------~~  248 (360)
                      ++|+..+++....         + +   +.+|+...-.|.+....... .|.. ..  ..+..       +       ..
T Consensus       113 sEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  192 (431)
T TIGR03251       113 ALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAP  192 (431)
T ss_pred             HHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccc
Confidence            9999999887631         0 1   36799888888765443332 2211 00  01110       0       00


Q ss_pred             CcC-------CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          249 GWG-------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       249 ~~~-------~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      .+.       -+++++++.+..   .+.++.++++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||++.++...+
T Consensus       193 ~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG  268 (431)
T TIGR03251       193 NLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG  268 (431)
T ss_pred             ccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccc
Confidence            000       013334444432   12256555554334445655 567889999999999999999999999865543

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.00  E-value=6.1e-05  Score=70.03  Aligned_cols=130  Identities=17%  Similarity=0.249  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCEEEEcC-CCch----HHHHHHHHcCCeEEEee
Q 018147          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPI-PQYP----LYSASIALHGGTLVPYY  243 (360)
Q Consensus       170 ~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~-P~y~----~~~~~~~~~g~~~~~v~  243 (360)
                      .++-+.+.+.+....  +..+++++++.+.+-.++.++.+.++ .+|++|++++ -+|+    .....++.++..   +.
T Consensus        75 ~~lp~~lgdklApLi--GA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~  149 (407)
T COG3844          75 FDLPERLGDKLAPLI--GARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YD  149 (407)
T ss_pred             hhchhHHHHHhhhhh--cCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---cc
Confidence            344444444444433  36789999999999999988887764 3689999887 2333    223344444433   11


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      +.    -.+.++++++++++      ++.+|++++.+.-||+.++   +.+|-.+++++|++++-|-+++.-..
T Consensus       150 ~~----~~~~P~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav  210 (407)
T COG3844         150 LE----GVIAPRALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV  210 (407)
T ss_pred             ce----eeeChHHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc
Confidence            11    14567899999988      7888888899999999999   99999999999999999999976433

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=97.98  E-value=0.0001  Score=71.17  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCC--CCCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPG--RATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~--~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      +++|+.||..+|++|++++.+.+.+...  .+....++ +.-..++.+.+.+.+++.++.+-+-+=+++..|++.++..+
T Consensus         5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~   84 (364)
T PRK12462          5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMI   84 (364)
T ss_pred             cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHH
Confidence            5688888999999999999877765321  11222222 12245566666667777667532222345566799999999


Q ss_pred             HHHHccCCCCEEE--EcCCCch-HHHHHHHHcCCeEEEeecCCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          207 MQLLIRSENDGIL--CPIPQYP-LYSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       207 ~~~l~~~~gd~Vl--v~~P~y~-~~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      ...|+. +||+++  +..-.|. -+...++.+| ++..+......+|  .+++++++  +.+      +.+.|.+++-..
T Consensus        85 ~~Nll~-~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~------d~~~v~~t~NET  154 (364)
T PRK12462         85 PMNFSR-PGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA------RAPFRHYVSNET  154 (364)
T ss_pred             HHHcCC-CCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC------CCcEEEEccCCC
Confidence            999995 899654  4455554 3455666676 4444432222222  34555542  111      567777777677


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .||+.++        ++.+.++.++|+|.+=.-
T Consensus       155 stGv~~~--------~~~~~~~~llvvD~sS~~  179 (364)
T PRK12462        155 VEGLQFP--------DAAGLPDSPLIADMSSDF  179 (364)
T ss_pred             CceEecC--------cccccCCCeEEEEcCchh
Confidence            8899886        222336899999987554

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.93  E-value=0.00017  Score=77.92  Aligned_cols=129  Identities=18%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             CCCCCC-----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC--CCEEEEcCCCchHHHHHH
Q 018147          160 TGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASI  232 (360)
Q Consensus       160 ~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~--gd~Vlv~~P~y~~~~~~~  232 (360)
                      ...|.|     ++|..+..-.....+.+..|  +++.++.+..+++.+.+.++.++...+  +|+|++++-.|+.+...+
T Consensus       105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~  182 (954)
T PRK05367        105 YTAYTPYQPEISQGRLEALLNFQTMVADLTG--LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVL  182 (954)
T ss_pred             hhccCCCChHHHHHHHHHHHHHHHHHHHHHC--CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHH
Confidence            445555     44544433333333333334  678899999999999998887763234  489999999999877554


Q ss_pred             ----HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          233 ----ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       233 ----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                          +..|.+++.++.+.+    ++        .+      ++.++++.+| |-+|.+.+   +++|+++|+++|+++++
T Consensus       183 ~t~a~~~G~ev~~~~~~~d----~~--------~~------~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~v  240 (954)
T PRK05367        183 RTRAEPLGIEVVVGDAAKA----LD--------HD------DVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAV  240 (954)
T ss_pred             HHHHHhCCCEEEEecCccC----CC--------cc------cEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEE
Confidence                557999999987532    11        11      4555666676 56999987   99999999999999999


Q ss_pred             ccCC
Q 018147          309 DEVY  312 (360)
Q Consensus       309 DeaY  312 (360)
                      |...
T Consensus       241 da~~  244 (954)
T PRK05367        241 AADL  244 (954)
T ss_pred             Eehh
Confidence            8633

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00018  Score=68.45  Aligned_cols=212  Identities=18%  Similarity=0.176  Sum_probs=123.9

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +..++|+-.+     -..-+|++++++.+.+....- ....|.... +.+|.+++++.+      +-+-+.+++++++++
T Consensus        49 G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H-~t~~~~~~p-i~~~Ae~L~s~~------P~~l~~vfF~nsGsE  120 (442)
T KOG1404|consen   49 GRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYH-TTSGYLNPP-IHDLAEALVSKL------PGDLKVVFFVNSGSE  120 (442)
T ss_pred             CceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEE-eeccccCCc-HHHHHHHHHHhC------CCCceEEEEecCCch
Confidence            3445555444     335688899998887754322 355677665 678888888776      334456899999999


Q ss_pred             HHHHHHHHHcc--CCCCEEEEcCCCchHH-HHHHHHcCCeEEEeecCC--------------CCCcCCC-----HHHHHH
Q 018147          202 AVHMMMQLLIR--SENDGILCPIPQYPLY-SASIALHGGTLVPYYLDE--------------ATGWGLE-----TSEVKK  259 (360)
Q Consensus       202 al~~~~~~l~~--~~gd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~--------------~~~~~~d-----~~~L~~  259 (360)
                      |..+++.....  +.- .|+--..+|... ...+-.-|......+...              ..-|+=+     .+.+.+
T Consensus       121 ANelal~mar~Yt~~~-diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~  199 (442)
T KOG1404|consen  121 ANELALKMARLYTGNL-DIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAK  199 (442)
T ss_pred             HHHHHHHHHHHhcCCc-eEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHH
Confidence            99998876532  233 444444555533 323332232222211110              0111111     333444


Q ss_pred             HHHHHH-hcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          260 QLEAAK-AKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       260 ~i~~~~-~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      .+++.. ..++..-+-+|..+ +--.|.+- ++--+++..++|+++|.++|.||+..+|...+.  ++.|.+.     +-
T Consensus       200 ~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~--~wgfe~h-----~v  272 (442)
T KOG1404|consen  200 ELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH--MWGFESH-----GV  272 (442)
T ss_pred             HHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc--ccccccc-----CC
Confidence            333322 22334445566655 44445443 445799999999999999999999999766553  5555432     11


Q ss_pred             CCCceEEEEeccCcCcccccccc
Q 018147          337 EKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      -||     +-+++|+++.|.-+|
T Consensus       273 ~PD-----IvTmAKgiGnG~Pl~  290 (442)
T KOG1404|consen  273 VPD-----IVTMAKGIGNGFPLG  290 (442)
T ss_pred             Ccc-----HHHHHhhccCCCcce
Confidence            255     578888888776554

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.81  E-value=6.7e-06  Score=78.25  Aligned_cols=193  Identities=15%  Similarity=0.128  Sum_probs=27.9

Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHH-HHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC
Q 018147          136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR-DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (360)
Q Consensus       136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr-~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~  214 (360)
                      +...+++++++++.+......   ...|.-..|-..-| ..+.+.+.+.    ...+..+++++...|+.+++..++  .
T Consensus        14 GRs~l~~~a~~a~~~~a~~Y~---nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la--~   84 (367)
T PF03841_consen   14 GRSPLSEEAIEAVAEVASGYS---NLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLA--K   84 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccc---ccccccccccccccccccccccccc----cccccccccccccccccccccccc--c
Confidence            333557778887766554431   33443333322222 2233333322    246778888888999999999986  5


Q ss_pred             CCEEEEcCCCch------HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          215 NDGILCPIPQYP------LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       215 gd~Vlv~~P~y~------~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      |.+|++..-.-.      .+.++++..|++++.|-...    ...+++++++|++      ++.+++-.|++|-.-.-++
T Consensus        85 ~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt  154 (367)
T PF03841_consen   85 GKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITE------NTAALLKVHTSNFRIQGFT  154 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc----ccccccccccccc------ccccccccccccccccccc
Confidence            677776652222      35677888999999886542    4468889999998      7988888898886322111


Q ss_pred             -HHHHHHHHHHHHHcCCEEEEccCCCCCcc---CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          289 -EENQRAIVDFCKKEGLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       289 -~~~l~~i~~la~~~~i~lI~DeaY~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       .-.++++++++++|++++|+|-.-+.+.-   -+-.+.+++..++. .+   .|   +++.|--|.++|
T Consensus       155 ~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~G---aD---lV~fSGdKlLGG  217 (367)
T PF03841_consen  155 GEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AG---AD---LVTFSGDKLLGG  217 (367)
T ss_dssp             ------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-CT----S---EEEEETTSSSSS
T ss_pred             ccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-cC---CC---EEEEECCCcCCC
Confidence             22589999999999999999977633211   00001223333321 11   23   778899998876

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=97.80  E-value=0.00019  Score=69.89  Aligned_cols=127  Identities=11%  Similarity=-0.002  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH-HH-HHHHHcCC-eEEEeecC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YS-ASIALHGG-TLVPYYLD  245 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~-~~-~~~~~~g~-~~~~v~~~  245 (360)
                      ..++-+.+.+.+++.++.+-+.+-++++.|+|.++..++..++..+||.|++.. .|.. +. .+++.+|. ++..+...
T Consensus        37 F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~  115 (374)
T TIGR01365        37 GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAE  115 (374)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCC
Confidence            466666666677776664322223566899999999999999833889999876 5553 34 78888999 46766544


Q ss_pred             CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       246 ~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      ..  -.+++++++.          + +.|+++|--..||+..+   +++++..+  ++.++|+|.+=.-
T Consensus       116 ~g--~~~~~~~ve~----------~-~~v~~vhnETSTGv~np---v~~i~~~~--~~~lliVDavSs~  166 (374)
T TIGR01365       116 YG--KLPDLKKVDF----------K-NDVVFTWNGTTSGVRVP---NGDFIPAD--REGLTICDATSAA  166 (374)
T ss_pred             CC--CCCCHHHcCC----------C-CCEEEecCCCchheecc---cccccccc--CCCcEEEEccchh
Confidence            33  2678888872          1 12667777778999998   44544322  4899999987654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00016  Score=67.39  Aligned_cols=161  Identities=17%  Similarity=0.234  Sum_probs=97.2

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc----
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----  212 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~----  212 (360)
                      ....+|.+++++.+..+.....+...|.+-  ..++.+    ++...+|    -+.++-++-+.+|...++....+    
T Consensus        73 qGhchpki~~aLqeq~~kLtlssrafYnd~--~~~f~~----~vt~lf~----~~kvlpmnTGaEa~Eta~KLaR~wgy~  142 (427)
T KOG1402|consen   73 QGHCHPKIIKALQEQADKLTLSSRAFYNDV--LGEFAE----YVTKLFG----YDKVLPMNTGAEAVETACKLARKWGYR  142 (427)
T ss_pred             cCCCCHHHHHHHHHHHhHhhhhhHHHhhhh--HHHHHH----HHHHhcC----cceeeecccchhHHHHHHHHHHHHHHh
Confidence            345688999999887776432122234332  234444    4444444    35677777778999888876541    


Q ss_pred             -C--CCCE--EEEcCCCchHHH-H---------HHHHcC----CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccE
Q 018147          213 -S--ENDG--ILCPIPQYPLYS-A---------SIALHG----GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA  273 (360)
Q Consensus       213 -~--~gd~--Vlv~~P~y~~~~-~---------~~~~~g----~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~  273 (360)
                       .  |.++  |+.....|.+-. .         ..+.+|    ..+..+|.       -|.++|+.+++.     +++.+
T Consensus       143 ~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------~d~eale~~l~~-----~~vaa  210 (427)
T KOG1402|consen  143 KKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------GDAEALEVALKS-----PNVAA  210 (427)
T ss_pred             hccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-------CCHHHHHHHhcC-----CCeeE
Confidence             1  3232  333333333211 0         111111    00111111       168889988876     25554


Q ss_pred             EEEecC-CCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 018147          274 LVVINP-GNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (360)
Q Consensus       274 iil~~P-~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~  320 (360)
                      .+ ..| +-.-|++.|.+ -++++.++|++||+++|.||+..++...+.
T Consensus       211 Fi-vEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk  258 (427)
T KOG1402|consen  211 FI-VEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK  258 (427)
T ss_pred             EE-eeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc
Confidence            44 555 88889888765 599999999999999999999999877664

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00012  Score=70.94  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=110.7

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc---C----CCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---S----ENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~---~----~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      .+...+..++.+.+...++-+ ....=..|.|+++++..+......   .    ....++++.-.+..+...++..+.++
T Consensus       116 p~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l  194 (491)
T KOG1383|consen  116 PVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVEL  194 (491)
T ss_pred             chhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEE
Confidence            356778888888888877644 222236688999985554443211   1    12346777778888999999999999


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCcc
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVY  317 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~-~~i~lI~DeaY~~~~~  317 (360)
                      ..+++++ ++|.+|+.++.+.+.+      ++.+++..-|+-|+|.+   |++++|.+++.+ +++.+.+|.+-+.|+-
T Consensus       195 ~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~  263 (491)
T KOG1383|consen  195 REVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFIN  263 (491)
T ss_pred             Eeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccc
Confidence            9999997 4799999999999998      89999999999999976   569999999988 9999999999999876

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00068  Score=63.97  Aligned_cols=165  Identities=21%  Similarity=0.327  Sum_probs=115.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc----CCCCEEEEcCCCch-HHHHHHHH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SENDGILCPIPQYP-LYSASIAL  234 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~----~~gd~Vlv~~P~y~-~~~~~~~~  234 (360)
                      .-.|+-+.+...|++++.+.+    |+    +.++-|.-+..|=++++..+++    .||....+++..|. ......+.
T Consensus        72 DEAYagsrs~~~L~~avkdif----Gf----q~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~  143 (471)
T COG3033          72 DEAYAGSRSYYALADAVKDIF----GF----QYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQI  143 (471)
T ss_pred             chhhcccccHHHHHHHHHHhc----Cc----eeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHh
Confidence            446888888999999998876    43    5677777667776777776664    24544455555554 44555677


Q ss_pred             cCCeEEEeecCCCCC--------cCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHHHHcCCE
Q 018147          235 HGGTLVPYYLDEATG--------WGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (360)
Q Consensus       235 ~g~~~~~v~~~~~~~--------~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la~~~~i~  305 (360)
                      .|+.++-++.++..+        -.+|++.|++.|++...+  ++..|+++ .-|.-.|+-.|.+.++++.++|++|++.
T Consensus       144 ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip  221 (471)
T COG3033         144 NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP  221 (471)
T ss_pred             cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc
Confidence            898888887765322        137999999999875332  45566666 4455689999999999999999999999


Q ss_pred             EEEccC-CCCCccC-----CCCCCCCHHHHHHhhC
Q 018147          306 LLADEV-YQENVYV-----PEKKFHSFKKVSRSMG  334 (360)
Q Consensus       306 lI~Dea-Y~~~~~~-----~~~~~~s~~~~~~~~~  334 (360)
                      ++.|.+ |.+..|-     ..-...|+..+..+|-
T Consensus       222 vv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~  256 (471)
T COG3033         222 VVMDAARFAENAYFIKQREPGYRDWSIEEIAREMY  256 (471)
T ss_pred             EEeehhhhhhhhhhhhhcCcccccccHHHHHHHHH
Confidence            999965 3444331     1114667777776654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00038  Score=67.36  Aligned_cols=166  Identities=14%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA  247 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~  247 (360)
                      |..++.+.+.+...+..|   .++.+++..| -..-...+-.|+ ++|.-|+-..-.+......++.-|+.++.+..+  
T Consensus       179 G~~~~hkelE~l~A~f~g---~e~a~vF~mG-f~TNs~~~p~l~-~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN--  251 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLG---VEDAIVFSMG-FATNSMNIPSLL-GKGSLIISDELNHASLITGARLSGATTRVFRHN--  251 (519)
T ss_pred             ccHHHHHHHHHHHHHhcC---CcceEEEecc-ccccccCcceee-cCCcceeeccccchheeccccccCceEEEEecC--
Confidence            444444444444444445   4677888877 333344556677 599888888899999988899999998887654  


Q ss_pred             CCcCCCHHHHHHHHHHHHhcC-CCc-----cEEEEe-cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 018147          248 TGWGLETSEVKKQLEAAKAKG-ITV-----RALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g-~~~-----k~iil~-~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~  320 (360)
                           |+..||+.|+++...| +++     |.+++. .--.--|.+..   +.+++.+++++..+++.||++.--..+..
T Consensus       252 -----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~t  323 (519)
T KOG1357|consen  252 -----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGAT  323 (519)
T ss_pred             -----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCCC
Confidence                 6888999888876544 121     233333 22223344444   89999999999999999999987544321


Q ss_pred             CCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       321 ~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ..  ..-.+ .+...  .+ --|..++|.|+|++
T Consensus       324 Gr--gvce~-~g~d~--~d-vDImMGtftKSfga  351 (519)
T KOG1357|consen  324 GR--GVCEY-FGVDP--ED-VDIMMGTFTKSFGA  351 (519)
T ss_pred             Cc--ceeec-cCCCc--hh-heeecceehhhccc
Confidence            10  10000 01111  22 24788999998864

>PLN02452 phosphoserine transaminase

Probab=97.65  E-value=0.0008  Score=65.37  Aligned_cols=167  Identities=14%  Similarity=0.055  Sum_probs=105.1

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCC--CCCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPG--RATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~--~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      .++|+.||..+|++|++++.+.+.+...  .+....++ +.-..++.+.+.+.+++.++.+-+-+-+++..|++.++..+
T Consensus         8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~   87 (365)
T PLN02452          8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAI   87 (365)
T ss_pred             eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHH
Confidence            4677788889999999998776543211  01111211 22245666666666766666432223356678899999999


Q ss_pred             HHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          207 MQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                      ...|+. +|+++++..-...+  +...++.+|...+..... ..+|  .+++++++.        .++.+.|.+++-...
T Consensus        88 ~~nl~~-~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~v~~~hnETs  157 (365)
T PLN02452         88 PLNLCK-PGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGK-DEKYTKIPSVSEWEL--------TPDAKFVHICANETI  157 (365)
T ss_pred             HHhcCC-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecC-CCCCCCCCChHHcCC--------CCCCcEEEECCCCCC
Confidence            999995 89988887766543  456677788644433211 2222  356666522        125778888887788


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      ||+.+.  +++++.      ++++|+|.+-.-
T Consensus       158 tGv~~~--~~~~i~------~~~lvVDa~Ss~  181 (365)
T PLN02452        158 HGVEFK--DYPDVG------NVPLVADMSSNF  181 (365)
T ss_pred             CcEecC--cccccC------CCeEEEECCccc
Confidence            999643  244443      389999988654

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0019  Score=61.55  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ..+++|+.++   ...-.+++.+.+...++..+-   .-.+-|+...-...+.+.||+|+    |   .++.|+...|- 
T Consensus        93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G---~E~aivYs~gF-  164 (467)
T KOG1358|consen   93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----G---TEDAIVYSYGF-  164 (467)
T ss_pred             CceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh----C---Ccceeeecccc-
Confidence            4456666655   456677888888888887632   11234776666778899999998    3   35667766664 


Q ss_pred             HHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH---hcCC---CccEE
Q 018147          201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK---AKGI---TVRAL  274 (360)
Q Consensus       201 ~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~---~~g~---~~k~i  274 (360)
                      .++..++.++++ .||-|.+..-........++...-.++.+..       .|+++|+..+.+..   +|.+   .++-.
T Consensus       165 ~ti~S~ipafsK-rGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrf  236 (467)
T KOG1358|consen  165 STIESAIPAFSK-RGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRF  236 (467)
T ss_pred             chhhhcchhhhc-cCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccceEE
Confidence            566777889985 9999998887777888777777666666542       36777766653321   1211   23333


Q ss_pred             EEe-cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          275 VVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       275 il~-~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      ++. ----+||.+.+   +.+|+++..+|...||.||.|+--+.+.
T Consensus       237 iv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~  279 (467)
T KOG1358|consen  237 IVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGK  279 (467)
T ss_pred             EEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccc
Confidence            333 33456899999   9999999999999999999998765553

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00029  Score=68.37  Aligned_cols=145  Identities=19%  Similarity=0.282  Sum_probs=101.6

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCC--------CCCCEEEcCChHHHHHHHHHHH-c----c-CCC-----------C-EEEE
Q 018147          167 QGIKGLRDTIAAGIEARDGFPA--------DPNDIFLTDGASPAVHMMMQLL-I----R-SEN-----------D-GILC  220 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~--------~~~~I~~t~Ga~~al~~~~~~l-~----~-~~g-----------d-~Vlv  220 (360)
                      .-..+|..-+-+|+.+..+.+.        +.-.|+-.+. +++...++.+. .    + +.+           + .+++
T Consensus       109 Pa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~ta-ses~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~  187 (511)
T KOG0628|consen  109 PACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTA-SESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC  187 (511)
T ss_pred             cchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCc-chhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence            3478999999999988776541        1223444443 34433333221 1    0 112           1 2567


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      .+-.+.+...++...|++...++.++  +|+++.+.|+++|++..+.|--+ .+++.+-+. || +-.-+++.+|..+|+
T Consensus       188 SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~GT-T~-~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  188 SDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATLGT-TS-SCAFDELEELGPVCR  262 (511)
T ss_pred             cCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEeecC-cc-ccccccHHHhcchhh
Confidence            77889999999999999999998876  69999999999999988877433 444444431 22 334578999999999


Q ss_pred             HcCCEEEEccCCCCCcc
Q 018147          301 KEGLVLLADEVYQENVY  317 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~  317 (360)
                      ++|+|+.+|.+|.+-.+
T Consensus       263 ~~glWLHVDAAYAGsa~  279 (511)
T KOG0628|consen  263 EEGLWLHVDAAYAGSAF  279 (511)
T ss_pred             hcCEEEEeehhhccccc
Confidence            99999999999997544

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.39  E-value=0.0018  Score=62.45  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             HHHHHHHhhcCCCCCCCCEEEcCChHH-HHHHHHHHHc-cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC-CCcC
Q 018147          175 TIAAGIEARDGFPADPNDIFLTDGASP-AVHMMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWG  251 (360)
Q Consensus       175 ~ia~~l~~~~g~~~~~~~I~~t~Ga~~-al~~~~~~l~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~  251 (360)
                      .++.-+-+..|.. +....++++.+|. .+.+.+.++. +..++.|+.+.-.+......+..+|.+++.++...+ +...
T Consensus        60 ~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~  138 (389)
T PF05889_consen   60 SLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELI  138 (389)
T ss_dssp             HHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEE
T ss_pred             HHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeee
Confidence            3333333445643 2345667665543 3344444442 246788998887766666677889999999885332 3345


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       252 ~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .|.+.+++.+++.   |....+.++++++---|..  .|++++|+++|++||+..|+..||+-
T Consensus       139 td~~~ie~~i~~~---G~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgv  196 (389)
T PF05889_consen  139 TDLEAIEAKIEEL---GADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGV  196 (389)
T ss_dssp             EHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT
T ss_pred             ccHHHHHHHHHHh---CCCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhh
Confidence            5788899888653   4455677777764333443  34799999999999999999999986

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.06  E-value=0.011  Score=63.40  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCC-----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--  211 (360)
                      ..|+.+.+.+.    +.+. -...|.|     ++|..+..=.....+.+.-|  .+..|.-+..+++.+...++.+..  
T Consensus        77 ~~p~~i~r~v~----~~p~-~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG--m~~aNaSl~d~atA~aEa~~~a~~~~  149 (939)
T TIGR00461        77 ILPPVIQRNLL----ENPG-WYTAYTPYQPEISQGRLEALLNFQTVVSDLTG--LPVANASLLDEGTAAAEAMALSFNVS  149 (939)
T ss_pred             cCChHHHHHHH----hCch-hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHC--CChhhhhccchhhHHHHHHHHHHHhh
Confidence            44665554433    2221 1345555     44544443334444444445  456677888888888776666542  


Q ss_pred             cCCCCEEEEcCCCchHHHHHHH----HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSENDGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++.+++|++++-.||.+..+++    ..|.+++.++          +++|++.+        ++.++++.+|+. +|.+.
T Consensus       150 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~--------~~~~v~~q~Pn~-~G~ie  210 (939)
T TIGR00461       150 KKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV--------DVFGCLLQYPAT-DGSIL  210 (939)
T ss_pred             cCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--------CEEEEEEECCCC-CeEEe
Confidence            1234899999999988776655    6788888763          34454433        366777888874 78886


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEc
Q 018147          288 AEENQRAIVDFCKKEGLVLLAD  309 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~D  309 (360)
                         ++++|+++++++|.+++++
T Consensus       211 ---d~~~i~~~~h~~gal~~~~  229 (939)
T TIGR00461       211 ---DYKQLIDALHSHKSLVSVA  229 (939)
T ss_pred             ---cHHHHHHHHHHcCCEEEEE
Confidence               4999999999999998884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=96.71  E-value=0.019  Score=56.53  Aligned_cols=121  Identities=23%  Similarity=0.274  Sum_probs=76.8

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--cCCCCEEEEcCCCchHHHHHHHH----cCCeE
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQYPLYSASIAL----HGGTL  239 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~  239 (360)
                      ++|..+..-.....+.+.-|.+  .-+.-+-.|++.+-..++.+..  +..+++|+++.-.+|.+..+++.    .|.++
T Consensus       105 sQG~Lq~lfe~Qs~i~eLTGmd--vaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~i  182 (429)
T PF02347_consen  105 SQGRLQALFEYQSMICELTGMD--VANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEI  182 (429)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTSS--EE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC--ccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEE
Confidence            5676655555556666655654  2344555666655554443321  12346999999999988886655    58999


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +.+++++++  ..|        .+      ++.+|++.+|+. .|.+-+   +++|.++++++|.++++
T Consensus       183 v~~~~~~~~--~~d--------~~------~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~  231 (429)
T PF02347_consen  183 VEVPLDEDG--TTD--------DD------DTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV  231 (429)
T ss_dssp             EEE-BBTTC--SB---------ST------TEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE
T ss_pred             EEecccccC--Ccc--------cc------CeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE
Confidence            999988663  233        22      799999999985 587755   99999999999988876

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=96.40  E-value=0.15  Score=49.53  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=71.7

Q ss_pred             CCCCEEEcCChHHHHHHHHHHHcc--CCCCEEEEcCCCchHHHHHHHHc----CCeEEEeecCCCCCcCCCHHHHHHHHH
Q 018147          189 DPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al~~~~~~l~~--~~gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      +-.|--+-.++|.+-..++.+...  .+..+|+++.-.|+.+..+++.+    |.+++.++.+       |.++|+++ .
T Consensus       136 ~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~  207 (450)
T COG0403         136 DVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-D  207 (450)
T ss_pred             CcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-c
Confidence            334455556666655555444321  24689999999999998887764    5666666544       67777776 3


Q ss_pred             HHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ..     .+-++++.+|+ -.|.  ..+++.+|.+.++++|.++++
T Consensus       208 ~~-----~~~gv~vQyP~-~~G~--~~~d~~~l~~~~h~~~al~~v  245 (450)
T COG0403         208 DG-----DVFGVLVQYPN-TFGI--VEEDLRALIEAAHSAGALVIV  245 (450)
T ss_pred             cc-----CeEEEEEecCC-CCCc--cchhHHHHHHHHhhcCCEEEE
Confidence            31     67889988887 4563  345799999999999876654

>PLN02672 methionine S-methyltransferase

Probab=96.22  E-value=0.056  Score=59.13  Aligned_cols=148  Identities=13%  Similarity=0.139  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-----CCCCEEEE
Q 018147          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SENDGILC  220 (360)
Q Consensus       146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-----~~gd~Vlv  220 (360)
                      ..+...+.+.   ....|.++.|...+|..||.|++..+++++++++|++.+.-..|+..+++.+.-     +.+.+-.+
T Consensus       408 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (1082)
T PLN02672        408 AYLASALKGL---SYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWL  484 (1082)
T ss_pred             HHHHHHHccC---CCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccC
Confidence            3344445443   477899999999999999999999999999999999999999999999887631     22322222


Q ss_pred             cCCCchHHHHHHHHcCC-------eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          221 PIPQYPLYSASIALHGG-------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~-------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      |    .-|...+...|.       ..+.|--.+.     ..+.+.+.+++.     ++++|+..--+   +-..+...++
T Consensus       485 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~  547 (1082)
T PLN02672        485 P----KKWLTSLAIENATSDSKSDDVITVIEAPR-----QSDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFE  547 (1082)
T ss_pred             C----HHHHhHhhhhcccccCccCCeEEEEeCCC-----cchHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHH
Confidence            1    233333333331       1112111111     123566667664     77777754322   3344556789


Q ss_pred             HHHHHHHHcCCEEEEccCCC
Q 018147          294 AIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~  313 (360)
                      .|++.+++.|.+++.|+.-.
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~  567 (1082)
T PLN02672        548 HLLNVTAEIGARLFLDISDH  567 (1082)
T ss_pred             HHHHHHHhhCcEEEEehhhh
Confidence            99999999999999997643

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=95.95  E-value=0.14  Score=52.21  Aligned_cols=141  Identities=23%  Similarity=0.330  Sum_probs=99.9

Q ss_pred             CCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC--Ch---HHHHHHHHHHHccCCCC----EEEEcCCCchH
Q 018147          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD--GA---SPAVHMMMQLLIRSEND----GILCPIPQYPL  227 (360)
Q Consensus       160 ~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~--Ga---~~al~~~~~~l~~~~gd----~Vlv~~P~y~~  227 (360)
                      .+.|.|   .+|+.++-+.+.+++.+.-|+    |.+.+-+  |+   -.++. ++++.....|+    .-++|.-.+..
T Consensus       568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL~-~IRaY~~~kge~hRnvClIPvSAHGT  642 (1001)
T KOG2040|consen  568 IHPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGLR-VIRAYLESKGEGHRNVCLIPVSAHGT  642 (1001)
T ss_pred             CCCCCchHHHhhHHHHHHHHHHHhheeecc----cceeecCCCCcccchhhHH-HHHHHHHhccCCcceeEEEeecccCC
Confidence            445555   568888888888888775553    4555532  32   33443 34444332332    25677777877


Q ss_pred             HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      -...+.++|.++++|.++.++  .+|..+|++..+++.+   +..++.++.|+.  -.++ ++.+++++++..+||--|-
T Consensus       643 NPASA~MagmkvvpV~~~~~G--~id~~dLk~kaekh~~---~Laa~MvTYPST--~Gvf-E~~i~d~cd~iHehGGQVY  714 (1001)
T KOG2040|consen  643 NPASAAMAGMKVVPVGCDANG--NIDMVDLKAKAEKHKD---NLAALMVTYPST--HGVF-EEGIDDICDIIHEHGGQVY  714 (1001)
T ss_pred             ChhhHHhcCCEEEEeeccCCC--CccHHHHHHHHHHhhh---hhheeEEecccc--cccc-cccHHHHHHHHHhcCCEEE
Confidence            777889999999999998775  7899999988776532   577889998863  2333 3679999999999999999


Q ss_pred             EccCCC
Q 018147          308 ADEVYQ  313 (360)
Q Consensus       308 ~DeaY~  313 (360)
                      .|.+--
T Consensus       715 lDGANM  720 (1001)
T KOG2040|consen  715 LDGANM  720 (1001)
T ss_pred             ecCCCc
Confidence            998754

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=95.31  E-value=0.23  Score=47.51  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCC--CcCcHHHHHHHHHHHHhhc--CCCCCCC----CEEEcCChHHHHHHHHHHHcc
Q 018147          141 SADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARD--GFPADPN----DIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~--g~~~~~~----~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      ...|++++-..+.+..+   -+|+-  ..|=.++...+..++.+|-  -+.++|+    +|---+| +.|...+..+++.
T Consensus        53 s~aVmeAlGS~ltNKYS---EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SG-SPANfavYtall~  128 (477)
T KOG2467|consen   53 SRAVMEALGSCLTNKYS---EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSG-SPANFAVYTALLK  128 (477)
T ss_pred             HHHHHHHHhHHhhcccc---cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCC-CchhhHHHhhhcC
Confidence            55677777666655322   12222  1122334444443333321  1235555    3444455 4556677788884


Q ss_pred             CCCCEEEEcC---CCchH--HHHHHHHcCCe-----EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          213 SENDGILCPI---PQYPL--YSASIALHGGT-----LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       213 ~~gd~Vlv~~---P~y~~--~~~~~~~~g~~-----~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                       |+|+|+--+   -.+-.  |..--+...+.     -.+|.+++..+ -+|.|.|++.-...     ++|+||.-.    
T Consensus       129 -Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDYD~Le~~A~~f-----rPk~iiaG~----  197 (477)
T KOG2467|consen  129 -PHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDYDKLEKTATLF-----RPKLIIAGT----  197 (477)
T ss_pred             -CCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceehHHHHHHHHhc-----CCcEEEecc----
Confidence             999998554   22221  11110111111     12344555543 58999999887765     898887432    


Q ss_pred             cccCCCHH-HHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          283 TGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       283 TG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        ..+++. +..++-++|.+.|.++++|.++. +++-.+.  -++-+..        .|   |+..+.-|++-|
T Consensus       198 --SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v--ipsPFey--------~D---iVTTTTHKsLRG  256 (477)
T KOG2467|consen  198 --SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV--IPSPFEY--------CD---IVTTTTHKSLRG  256 (477)
T ss_pred             --ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc--CCCcccc--------cc---eeeccccccccC
Confidence              233333 46777778888899999999984 4444332  2222222        23   666777777644

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=94.85  E-value=0.059  Score=50.04  Aligned_cols=188  Identities=20%  Similarity=0.240  Sum_probs=106.3

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      ...++|.-.|   ..-.+|+++++....+.-...  ..++...    +|-+- |+.+....  + .-+-+++++++++|.
T Consensus        46 g~~yLDCInNVaHvghchp~VV~A~~kQmat~~t--N~RFlhd----~lv~c-A~~l~stl--P-eLsvc~F~NSGSEAN  115 (452)
T KOG1403|consen   46 GTRYLDCINNVAHVGHCHPEVVRAGAKQMATIST--NNRFLHD----ELVQC-ARTLTSTL--P-ELSVCFFVNSGSEAN  115 (452)
T ss_pred             cccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcc--cchhhHH----HHHHH-HHHHhhcC--C-CceEEEEecCCchhh
Confidence            4445554444   556789999987666654432  2233322    22222 22221110  1 134578899999999


Q ss_pred             HHHHHHHcc--CCCCEEEEcCCCchHHHH-HHHH------cCC-----eEEEe-ecCC--CCCc-----------CCCHH
Q 018147          204 HMMMQLLIR--SENDGILCPIPQYPLYSA-SIAL------HGG-----TLVPY-YLDE--ATGW-----------GLETS  255 (360)
Q Consensus       204 ~~~~~~l~~--~~gd~Vlv~~P~y~~~~~-~~~~------~g~-----~~~~v-~~~~--~~~~-----------~~d~~  255 (360)
                      .++++...+  ...| |++.+-.|.++.. .++.      .|.     .++.+ |+.+  .+.|           ..-.+
T Consensus       116 DLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad  194 (452)
T KOG1403|consen  116 DLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYAD  194 (452)
T ss_pred             HHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhh
Confidence            999887532  2444 4444555554332 2221      111     12222 1111  0011           12245


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCH
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~  326 (360)
                      .+++.+++..++|..+.+.+-..-+.--|+++|+. -.+++++..+.+|-+.|.||+.-+|..-+. .++++
T Consensus       195 ~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~-hyWaf  265 (452)
T KOG1403|consen  195 PVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGS-HYWAF  265 (452)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccch-hhhhh
Confidence            67777777777776776555445566678888766 488999999999999999999999655553 34443

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=93.98  E-value=0.64  Score=42.59  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=75.9

Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCC-EEEEcCCCchHHHHHHHHcCCeEEEee-cCCCCCcCC
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND-GILCPIPQYPLYSASIALHGGTLVPYY-LDEATGWGL  252 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~-~~~~~~~~~  252 (360)
                      ++...-+..|...-.+.+++--..-..+.+.+..+.. .|.. .|+-+.-.--.....+-.+|.+++.+. +.+.+....
T Consensus        62 ~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~t  141 (432)
T KOG3843|consen   62 FAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELIT  141 (432)
T ss_pred             HHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHH
Confidence            3333333346554455555432222334444444432 2433 343333332333334455788877664 334444556


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       253 d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |++.++..+++.     ....|+..+.....=..-+++.+++|+.+|..|++.-|+..+|+-
T Consensus       142 dleav~~~iee~-----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnaygl  198 (432)
T KOG3843|consen  142 DLEAVEAIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL  198 (432)
T ss_pred             hHHHHHHHHHHh-----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccccc
Confidence            888888888774     444454444332222233567899999999999999999999986

>PRK12566 glycine dehydrogenase; Provisional

Probab=93.69  E-value=2.2  Score=46.32  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             CCCCCC-----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH---HHHHHHHHHccCCCCEEEEcCCCchHHHHH
Q 018147          160 TGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP---AVHMMMQLLIRSENDGILCPIPQYPLYSAS  231 (360)
Q Consensus       160 ~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~---al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~  231 (360)
                      ...|+|     ++|..+..=.....+.+.-|.++  .|--+-.|++.   |+.++.+.-. ....+|+++.-.+|.+..+
T Consensus       108 yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~v--aNASl~D~atA~aEA~~ma~~~~~-~k~~~~~v~~~~hP~~~~v  184 (954)
T PRK12566        108 YTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDL--ANASLLDEATAAAEAMALAKRVAK-SKSNRFFVDEHCHPQTLSV  184 (954)
T ss_pred             hhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchh--hhhhhccchhHHHHHHHHHHHHhh-cCCCEEEECCCCCHHHHHH
Confidence            455666     34544333333333434345443  33344445554   4443333221 1256899999999988877


Q ss_pred             HHH----cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          232 IAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       232 ~~~----~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      ++.    .|.+++.             +++++.+.+      ++-++++.+|+. .|.+-   ++++|.++++++|.++|
T Consensus       185 ~~t~~~~~g~~i~~-------------~~~~~~~~~------~~~~v~vq~P~~-~G~i~---d~~~i~~~~h~~gal~~  241 (954)
T PRK12566        185 LRTRAEGFGFELVV-------------DAVDNLAAH------AVFGALLQYPDT-HGEIR---DLRPLIDQLHGQQALAC  241 (954)
T ss_pred             HHHhhhcCCcEEEE-------------cchhhcCCC------CEEEEEEECCCC-ceEEc---cHHHHHHHHHHcCCEEE
Confidence            665    3566653             223333322      577888889974 68884   49999999999988765

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=93.43  E-value=1.3  Score=39.69  Aligned_cols=99  Identities=21%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCEE--------------EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHH
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDGI--------------LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~V--------------lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~  258 (360)
                      +.+-+|+.....++..++-  .|-.|              ....|.-......++..|..++.......  ..-..++|.
T Consensus         4 ~aL~SGGKDS~~Al~~a~~--~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~   79 (223)
T COG2102           4 IALYSGGKDSFYALYLALE--EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK   79 (223)
T ss_pred             EEEEecCcHHHHHHHHHHH--cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence            6778899999888877773  44332              22222222334456667888888776542  244688999


Q ss_pred             HHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      ++++..     +..+|+       +|.+.+..+...+-.+|++-|+.++
T Consensus        80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~  116 (223)
T COG2102          80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKVY  116 (223)
T ss_pred             HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe
Confidence            999874     556777       8999999999999999999998644

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=91.93  E-value=0.66  Score=44.25  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEEecC-CCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          253 ETSEVKKQLEAAKAKGITVRALVVINP-GNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       253 d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      -++++++.|.+.+++...+. -+|..| +..-| .--+++..+.+-++|++||+.+|+||+..+..-.+
T Consensus       254 Cl~~Ve~li~~~~~k~~pVa-aiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG  321 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVA-AIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG  321 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeE-EEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC
Confidence            36777888887766654454 444556 33323 23478899999999999999999999998854444

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=89.63  E-value=3.8  Score=39.32  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      |...+|+.||...|+++++.+.+.+.+....  +...-++ +.-...+.+...+.+++.++++-+-+=+++-.|++..+.
T Consensus         4 ~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~   83 (365)
T COG1932           4 PRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFA   83 (365)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHH
Confidence            5677899999999999999988877664220  1111122 122344555556666666776544333455667899999


Q ss_pred             HHHHHHccCCCCEEEEcCCCchH
Q 018147          205 MMMQLLIRSENDGILCPIPQYPL  227 (360)
Q Consensus       205 ~~~~~l~~~~gd~Vlv~~P~y~~  227 (360)
                      .+...|+. .+..-.+..-.|..
T Consensus        84 ~~p~nLl~-~~~~~yv~~g~Ws~  105 (365)
T COG1932          84 MAPMNLLG-KRGTDYVDTGAWSE  105 (365)
T ss_pred             HHHHhhhc-ccCceeEeeeehhH
Confidence            99999874 33221333444543

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=88.64  E-value=3.5  Score=38.79  Aligned_cols=169  Identities=16%  Similarity=0.130  Sum_probs=107.7

Q ss_pred             CccccCccC-CCCCHHHHHHHHHHHHcCCCCCCCCCCCCc-------CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          129 SILDRSETQ-GLFSADSIERAWQILDQIPGRATGAYSHSQ-------GIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       129 ~~l~~~~~~-~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~-------G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ..+.++-|. ..+|..+.+.+.+.++.-..  ...|+...       +......-++...      +...++|.+.+.-+
T Consensus        67 ~~iYlcGNSLGLmPK~t~~~~~~eLDkWak--~av~gH~~GkvPW~~~De~il~l~~~iV------GA~e~EvavmNsLT  138 (465)
T KOG3846|consen   67 PVIYLCGNSLGLMPKSTRNSINAELDKWAK--CAVEGHFKGKVPWVSIDEPILPLLAPIV------GAQENEVAVMNSLT  138 (465)
T ss_pred             CeEEEeccccccCchhhHhHHHHHHHHHHh--hhhhcccccccceeecchhhhhhhhhhc------cCCchhhhhHhhhh
Confidence            455666663 34555555556666654321  22333332       2334444444444      46788999999999


Q ss_pred             HHHHHHHHHHccCCC---CEEEEcCCCch----HHHHHHHHcCCeEE----EeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          201 PAVHMMMQLLIRSEN---DGILCPIPQYP----LYSASIALHGGTLV----PYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       201 ~al~~~~~~l~~~~g---d~Vlv~~P~y~----~~~~~~~~~g~~~~----~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ..++.++..|.+ |-   -+|+++.-.||    .....++..|..+.    .+...+. .-.+..+++.+.|++.   |.
T Consensus       139 vNlh~Ll~sFyK-PTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG-EetlRteDILd~IEkn---gD  213 (465)
T KOG3846|consen  139 VNLHSLLISFYK-PTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG-EETLRTEDILDTIEKN---GD  213 (465)
T ss_pred             hHHHHHHHHhcC-CcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc-ccchhHHHHHHHHHhc---CC
Confidence            999999999985 43   34888776665    45566777887642    3322222 2257778888888763   33


Q ss_pred             CccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       270 ~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+.+|+++-.+.=||+.++   +.+|-..-+..|++|=.|-++.
T Consensus       214 eiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA  254 (465)
T KOG3846|consen  214 EIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA  254 (465)
T ss_pred             eEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh
Confidence            4555666677889999999   7777755556688888887765

>PRK08265 short chain dehydrogenase; Provisional

Probab=88.17  E-value=11  Score=34.18  Aligned_cols=101  Identities=15%  Similarity=0.030  Sum_probs=55.0

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..+
T Consensus         7 k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          7 KVAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASLGERARFIATDIT-----DDAAIERAVATVVARFGR   80 (261)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence            3455555544333445555664 7888888765433344444555666666666533     577777777665444335


Q ss_pred             ccEEEEecC-CCCcccCCCHHHHHHHHH
Q 018147          271 VRALVVINP-GNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~~~~~~~l~~i~~  297 (360)
                      +..++.+-. ..+.+...+.++++++.+
T Consensus        81 id~lv~~ag~~~~~~~~~~~~~~~~~~~  108 (261)
T PRK08265         81 VDILVNLACTYLDDGLASSRADWLAALD  108 (261)
T ss_pred             CCEEEECCCCCCCCcCcCCHHHHHHHHh
Confidence            665554321 122333455666655443

>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]

Probab=88.02  E-value=16  Score=34.36  Aligned_cols=103  Identities=13%  Similarity=0.148  Sum_probs=63.8

Q ss_pred             CCCCEEEcCChHHHHHHHHHHHccCCC--CEEEEcC--CCchHHHHH--HHHcCCeEEEeecCCCCCcCCCHHHHHHHHH
Q 018147          189 DPNDIFLTDGASPAVHMMMQLLIRSEN--DGILCPI--PQYPLYSAS--IALHGGTLVPYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al~~~~~~l~~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      ..++|++|.|.+..+...+....+ .|  =+|++.+  |.+.++..+  +...|++..-++         | .++-..+.
T Consensus       161 hsnEviLT~g~SrTV~~FL~~A~k-k~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~---------d-aaVfA~Ms  229 (353)
T KOG1465|consen  161 HSNEVILTLGSSRTVENFLKHAAK-KGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIP---------D-AAVFAMMS  229 (353)
T ss_pred             ccCceEEecCccHHHHHHHHHHHh-ccCceEEEEeecCCcccchHhhHHHHHcCCeeEEec---------c-HHHHHHhh
Confidence            467899999999988888877664 43  3455555  555543332  223466654443         2 33444444


Q ss_pred             HHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +      --|+|+-++.--+.|.+....-...++..|++|-+.+++
T Consensus       230 r------VnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~V  269 (353)
T KOG1465|consen  230 R------VNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIV  269 (353)
T ss_pred             h------cceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEE
Confidence            3      244555556655666677666678888888888876655

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=85.74  E-value=13  Score=33.49  Aligned_cols=100  Identities=22%  Similarity=0.227  Sum_probs=66.0

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCEEEE-------------cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHH
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDGILC-------------PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~Vlv-------------~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      ++..+|+......+.++.. . -+-+.+             ..+........++..|..++.++....  +.-..++|.+
T Consensus         4 ~~l~SGGKDS~~al~~a~~-~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~--~e~~~e~l~~   79 (223)
T TIGR00290         4 AALISGGKDSCLALYHALK-E-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT--EEDEVEELKG   79 (223)
T ss_pred             EEEecCcHHHHHHHHHHHH-h-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC--ccHHHHHHHH
Confidence            5667888888888887764 2 332221             111222334566778988877664322  2234566777


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ++++.     .+.+++       +|.+.+..+...+-++|.+-|+..+.
T Consensus        80 ~l~~~-----gv~~vv-------~GdI~s~~qr~~~e~v~~~lgl~~~~  116 (223)
T TIGR00290        80 ILHTL-----DVEAVV-------FGAIYSEYQKTRIERVCRELGLKSFA  116 (223)
T ss_pred             HHHHc-----CCCEEE-------ECCcccHHHHHHHHHHHHhcCCEEec
Confidence            77664     577777       89999999999999999999886443

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.51  E-value=24  Score=33.15  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch---HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       188 ~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      +..+-+++|.|+...=..+..-|.+ .|.++++.+-.=.   .+...++..| ++..|.+|-.     +.|++.+..+.-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~-rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a~~V  108 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAK-RGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLAKKV  108 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHH-hCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHHHHH
Confidence            4445567777666655666666664 7887766663333   3334444445 6777777643     556666655544


Q ss_pred             HhcCCCccEEEEecC---CCCcccCCCHHHHHHHHH
Q 018147          265 KAKGITVRALVVINP---GNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       265 ~~~g~~~k~iil~~P---~NPTG~~~~~~~l~~i~~  297 (360)
                      +++-.++ -|++||.   +.-...-.+.+++++..+
T Consensus       109 k~e~G~V-~ILVNNAGI~~~~~ll~~~d~ei~k~~~  143 (300)
T KOG1201|consen  109 KKEVGDV-DILVNNAGIVTGKKLLDCSDEEIQKTFD  143 (300)
T ss_pred             HHhcCCc-eEEEeccccccCCCccCCCHHHHHHHHH
Confidence            4443344 4666776   233345567788888665

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=84.47  E-value=13  Score=30.75  Aligned_cols=99  Identities=12%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCC-EEEEcCCC--chHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          193 IFLTDGASPAVHMMMQLLIRSEND-GILCPIPQ--YPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd-~Vlv~~P~--y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      +++|.|++..=..+.+.|.. .|+ .|++....  ......   .++..+.++..+++|-.     +.+.+++.++...+
T Consensus         3 ~lItGa~~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~   76 (167)
T PF00106_consen    3 VLITGASSGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-----DPESIRALIEEVIK   76 (167)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-----SHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHh-cCceEEEEeeeccccccccccccccccccccccccccccc-----cccccccccccccc
Confidence            45555544433445556664 555 55555544  333333   34556788888887743     67888888887665


Q ss_pred             cCCCccEEEEecCCCCcccC--CCHHHHHHHHH
Q 018147          267 KGITVRALVVINPGNPTGQV--LAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~NPTG~~--~~~~~l~~i~~  297 (360)
                      +..+...++.+....+.+..  ++.++++++.+
T Consensus        77 ~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~  109 (167)
T PF00106_consen   77 RFGPLDILINNAGIFSDGSLDDLSEEELERVFR  109 (167)
T ss_dssp             HHSSESEEEEECSCTTSBSGGGSHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhccc
Confidence            55567777766443333333  23456666555

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein

Probab=83.99  E-value=26  Score=31.36  Aligned_cols=102  Identities=22%  Similarity=0.300  Sum_probs=63.4

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCEEE---EcCCC----c-------hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHH
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDGIL---CPIPQ----Y-------PLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~Vl---v~~P~----y-------~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~  258 (360)
                      +++.+|+......+..+.-  .|..|.   +..+.    |       ......++..|.....+.++...  ....+.|.
T Consensus         1 ~vl~SGGkDS~~al~~a~~--~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~--~~~~~~l~   76 (218)
T TIGR03679         1 AALYSGGKDSNYALYKALE--EGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK--EKEVEDLK   76 (218)
T ss_pred             CeeecCcHHHHHHHHHHHH--cCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC--hHHHHHHH
Confidence            3566788887776665553  566552   22121    1       13345667789888877765211  12345677


Q ss_pred             HHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      +++...+++  ....|+       +|.+.+......+-++|.+.|+.++
T Consensus        77 ~~l~~~~~~--g~~~vv-------~G~i~sd~~~~~~e~v~~~~gl~~~  116 (218)
T TIGR03679        77 GALKELKRE--GVEGIV-------TGAIASRYQKSRIERICEELGLKVF  116 (218)
T ss_pred             HHHHHHHHc--CCCEEE-------ECCcccHhHHHHHHHHHHhCCCeEE
Confidence            777776554  466677       7888887777777788888776543

This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=81.33  E-value=3.5  Score=38.96  Aligned_cols=70  Identities=17%  Similarity=0.342  Sum_probs=50.7

Q ss_pred             HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      +.+.+..++.++..+.+.++.+|.+..+.+.+.-+.    |..      .++ .+.|..++++|+++|++.|+++||-||
T Consensus        21 ~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~----g~~------~~~-~~~~~~yT~~di~elv~yA~~rgI~vi   89 (303)
T cd02742          21 TIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEK----GGQ------INP-RSPGGFYTYAQLKDIIEYAAARGIEVI   89 (303)
T ss_pred             HHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhh----ccc------ccC-CCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence            455667789999999998888888877666554332    101      112 244668999999999999999998776


Q ss_pred             E
Q 018147          308 A  308 (360)
Q Consensus       308 ~  308 (360)
                      -
T Consensus        90 P   90 (303)
T cd02742          90 P   90 (303)
T ss_pred             E
Confidence            4

These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=81.14  E-value=23  Score=31.88  Aligned_cols=100  Identities=20%  Similarity=0.267  Sum_probs=63.8

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCE-------------EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHH
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDG-------------ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~-------------Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      ++..+|+......+.+++- . .+-             .....+........++..|..++.+.....  +.-..++|.+
T Consensus         4 ~vl~SGGKDS~lAl~~~~~-~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~--~e~~~~~l~~   79 (222)
T TIGR00289         4 AVLYSGGKDSILALYKALE-E-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE--EEKEVEDLAG   79 (222)
T ss_pred             EEEecCcHHHHHHHHHHHH-c-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc--hhHHHHHHHH
Confidence            4567888887777776653 2 332             222222333445667778988877765432  1223445555


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      .+++.     .+.+|+       +|.+.+..+...+-++|.+-|+..+.
T Consensus        80 ~l~~~-----gv~~vv-------~GdI~s~~qr~~~e~vc~~~gl~~~~  116 (222)
T TIGR00289        80 QLGEL-----DVEALC-------IGAIESNYQKSRIDKVCRELGLKSIA  116 (222)
T ss_pred             HHHHc-----CCCEEE-------ECccccHHHHHHHHHHHHHcCCEEec
Confidence            45432     577777       89999999999999999999986543

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=80.71  E-value=15  Score=34.27  Aligned_cols=171  Identities=15%  Similarity=0.072  Sum_probs=92.6

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCC--CCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRA--TGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~--~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      ...++|..+|..+|..|+..+.+.+-+...-+  ...-++ +.....+.+.....+++.+.++-+-+-+++-.|++..+.
T Consensus         6 ~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFa   85 (370)
T KOG2790|consen    6 ERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFA   85 (370)
T ss_pred             cceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCccccc
Confidence            34678888888899999998876665532211  111111 122344455555556665665533344566778888888


Q ss_pred             HHHHHHcc-C---CCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC-CcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          205 MMMQLLIR-S---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       205 ~~~~~l~~-~---~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      .+...|+. .   .-|.|++-...--.+..+-+......+..++.+.. +--+|.+.++..        ++.+.+++|.-
T Consensus        86 Av~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~--------~da~yvyyCaN  157 (370)
T KOG2790|consen   86 AVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELN--------PDASYVYYCAN  157 (370)
T ss_pred             ccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccC--------CCccEEEEecC
Confidence            87777762 1   34777777666556666544444445555554432 112455554431        24456666632


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY  312 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY  312 (360)
                      -.--|+-++     .+- +-.-+|.++|+|-.-
T Consensus       158 ETVHGVEf~-----~~P-~~~~~~~vlVaDmSS  184 (370)
T KOG2790|consen  158 ETVHGVEFD-----FIP-VNDPKGAVLVADMSS  184 (370)
T ss_pred             ceeeceecC-----CCC-CCCCCCceEEEeccc
Confidence            222344433     111 112357777887553

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=80.30  E-value=24  Score=31.34  Aligned_cols=90  Identities=14%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHccCCCCEEEE-cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 018147          199 ASPAVHMMMQLLIRSENDGILC-PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (360)
Q Consensus       199 a~~al~~~~~~l~~~~gd~Vlv-~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~  277 (360)
                      +..+- .+++.|.. .+-.|.+ ..+.-......++..|++++..+++       |.+.|.++++.       +..|+++
T Consensus         8 G~~G~-~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~-------~~~~l~~al~g-------~d~v~~~   71 (233)
T PF05368_consen    8 GNQGR-SVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYD-------DPESLVAALKG-------VDAVFSV   71 (233)
T ss_dssp             SHHHH-HHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT--------HHHHHHHHTT-------CSEEEEE
T ss_pred             cHHHH-HHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccC-------CHHHHHHHHcC-------CceEEee
Confidence            44443 34445543 5544443 3333223445567789998865543       68999998874       6677777


Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       278 ~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      .+.+.   .-..+....+++.|++.|+-.+
T Consensus        72 ~~~~~---~~~~~~~~~li~Aa~~agVk~~   98 (233)
T PF05368_consen   72 TPPSH---PSELEQQKNLIDAAKAAGVKHF   98 (233)
T ss_dssp             SSCSC---CCHHHHHHHHHHHHHHHT-SEE
T ss_pred             cCcch---hhhhhhhhhHHHhhhccccceE
Confidence            65432   2234567889999999887443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
3tcm_A	500	Crystal Structure Of Alanine Aminotransferase From		1e-141
3ihj_A	498	Human Alanine Aminotransferase 2 In Complex With Pl		1e-64
1iax_A	428	Crystal Structure Of Acc Synthase Complexed With Pl		3e-14
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		4e-14
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		4e-14
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		4e-14
2gb3_A	409	Crystal Structure Of Aspartate Aminotransferase (Tm		1e-13
1ynu_A	473	Crystal Structure Of Apple Acc Synthase In Complex		4e-11
1m7y_A	435	Crystal Structure Of Apple Acc Synthase In Complex		5e-11
1b8g_A	429	1-aminocyclopropane-1-carboxylate Synthase Length =		5e-11
3piu_A	410	High-Resolution Structure Of Native Malus Domestica		6e-11
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		3e-10
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		4e-09
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		5e-09
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		1e-08
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		1e-08
3b1c_A	392	Crystal Structure Of Betac-S Lyase From Streptococc		1e-08
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		3e-08
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		7e-08
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		7e-08
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		7e-08
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		7e-08
3l8a_A	421	Crystal Structure Of Metc From Streptococcus Mutans		2e-07
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		2e-07
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		2e-07
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		3e-07
1d2f_A	390	X-Ray Structure Of Maly From Escherichia Coli: A Py		5e-07
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		7e-07
3nra_A	407	Crystal Structure Of An Aspartate Aminotransferase		9e-07
3jtx_A	396	Crystal Structure Of Aminotransferase (np_283882.1)		1e-06
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		1e-06
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		1e-06
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		1e-06
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		1e-06
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		2e-06
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		2e-06
4dgt_A	391	Crystal Structure Of Plp-Bound Putative Aminotransf		8e-06
1gew_A	356	Crystal Structure Of Histidinol-Phosphate Aminotran		8e-06
3h14_A	391	Crystal Structure Of A Putative Aminotransferase Fr		1e-05
1fg3_A	356	Crystal Structure Of L-Histidinol Phosphate Aminotr		2e-05
3f6t_A	533	Crystal Structure Of Aspartate Aminotransferase (E.		4e-05
2x5d_A	412	Crystal Structure Of A Probable Aminotransferase Fr		4e-05
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		5e-05
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		5e-05
3t32_B	383	Crystal Structure Of A Putative C-S Lyase From Baci		7e-05
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		8e-05
2egy_A	397	Crystal Structure Of Lysn, Alpha-Aminoadipate Amino		1e-04
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		2e-04
3dzz_A	391	Crystal Structure Of A Putative Plp-Dependent Amino		2e-04
3qgu_A	449	L,L-Diaminopimelate Aminotransferase From Chalmydom		2e-04
3ftb_A	361	The Crystal Structure Of The Histidinol-Phosphate A		2e-04
3eia_A	432	Crystal Structure Of K270q Variant Of Ll-Diaminopim		4e-04
3ei8_A	432	Crystal Structure Of K270n Variant Of Ll-Diaminopim		4e-04
2z1z_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		4e-04
4fl0_A	456	Crystal Structure Of Ald1 From Arabidopsis Thaliana		4e-04
2z20_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		6e-04

>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500

Iteration: 1
 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/296 (80%), Positives = 263/296 (88%)
Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYCNIGNPQSLGQQP+TF
Sbjct: 25  VDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTF 84
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
           FREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGAYSHSQGI GLRD IA
Sbjct: 85  FREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIA 144
Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
           +GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALHGG
Sbjct: 145 SGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGG 204
Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
            LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ  IV 
Sbjct: 205 ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVK 264
Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY 353
           FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ LVS+QSVSKG Y
Sbjct: 265 FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYY 320

>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498

Iteration: 1
 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/299 (44%), Positives = 188/299 (62%), Gaps = 11/299 (3%)
Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           ++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+ Q++GQQPITF
Sbjct: 25  LESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIRANIGDAQAMGQQPITF 83
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
            R+V+ALC +P++LD       F  D+ +RA +IL    G + G+YS SQG+  +R+ +A
Sbjct: 84  LRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVA 139
Query: 178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLYSASIA 233
           A I  RDG  PADP++I+LT GAS  +  ++++L+        G++ PIPQYPLYSA I+
Sbjct: 140 AYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS 199
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                 V YYLDE   W L  +E+++ ++ AK      + L +INPGNPTGQV + +   
Sbjct: 200 ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIE 258
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKG 351
            ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG     ++ L SF S SKG
Sbjct: 259 DVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKG 317

>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 8/198 (4%)
Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEN 215
           +A   +    G+   R  IA  +E   G     DP  + +  GA+ A   ++   +    
Sbjct: 74  KAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETII-FCLADPG 132
Query: 216 DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL 274
           D  L P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L
Sbjct: 133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV--SRS 332
           ++ NP NP G  L ++  ++++ F  +  + L+ DE+Y   V+    +F S  ++   + 
Sbjct: 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQE 251
Query: 333 MGYGEKDISLVSFQSVSK 350
           M Y  KD+  + + S+SK
Sbjct: 252 MTYCNKDLVHIVY-SLSK 268

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 59/297 (19%)
Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 15  RALSVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 62
Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C       ++  +G                        Y  S+G+  LR  I    + +
Sbjct: 63  YC-------KAIKEG---------------------HNYYGDSEGLPELRKAIVEREKRK 94
Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++   L+    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 95  NGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 153
Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E   W  +  +++K++          +A+ VINP NPTG +  ++    I++   +  
Sbjct: 154 TIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207
Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW 360
           + +++DE+Y            +++    S G   KD+ ++    +SK    +F + W
Sbjct: 208 IPVISDEIYD---------LMTYEGEHISPGSLTKDVPVIVMNGLSK---VYFATGW 252

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   ++ + + +L P
Sbjct: 59  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-DGEEVLIP 117
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P N
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCN 171
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           PTG VL +++   I DF  +  L++++DEVY+  +Y
Sbjct: 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY 207

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   ++ + + +L P
Sbjct: 58  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-DGEEVLIP 116
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P N
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCN 170
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           PTG VL +++   I DF  +  L++++DEVY+  +Y
Sbjct: 171 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY 206

>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHS GI  LR+  A+  + R      P ++ +T+G S A+ +    +I +  D IL   
Sbjct: 75  YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI-LFSFAVIANPGDEILVLE 133
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEA---AKAKGITVRALVVINP 279
           P Y  Y+A   + G  L+P       G+      + + LE+    + KGI     V+ NP
Sbjct: 134 PFYANYNAFAKIAGVKLIPVTRRXEEGFA-----IPQNLESFINERTKGI-----VLSNP 183
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
            NPTG V  ++  R +V+  ++ GL L+ DEVY E V+
Sbjct: 184 CNPTGVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVF 221

>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 168
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228
Query: 308 ADEVYQENVY 317
           +DE+Y    +
Sbjct: 229 SDEIYSGTAF 238

>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 168
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228
Query: 308 ADEVY 312
           +DE+Y
Sbjct: 229 SDEIY 233

>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 108 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 166
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 167 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 226
Query: 308 ADEVYQENVY 317
           +DE+Y    +
Sbjct: 227 SDEIYSGTAF 236

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199
           F  +++ RA    DQ        Y+   G+  LR+ +A      + F  +P  + +T GA
Sbjct: 42  FLLEAVRRALGRQDQ--------YAPPAGLPALREALA------EEFAVEPESVVVTSGA 87
Query: 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVK 258
           + A+++++Q L+    D ++   P + +Y     L G       LD    G+ L+ S ++
Sbjct: 88  TEALYVLLQSLV-GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALE 146
Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           K L          RAL++  P NPTG V  E    AI    +   L L++DEVY E  Y
Sbjct: 147 KALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY 199

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
           G+  G Y+ S G    R+ +A+     +  P +  D+ LT G S A+ + + +L  +   
Sbjct: 64  GKYNG-YAPSIGYLSSREEVASYYHCPEA-PLEAKDVILTSGCSQAIELCLAVL-ANPGQ 120
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P + LY       G  +  Y L     W ++  +++  ++   A       LVV
Sbjct: 121 NILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTA------CLVV 174
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
            NP NP G V ++ + + I+   +++ + +LADE+Y + V+
Sbjct: 175 NNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVF 215

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
           G+  G Y+ S G    R+ IA+     +  P +  D+ LT G S A+ + + +L  +   
Sbjct: 87  GKYNG-YAPSIGFLSSREEIASYYHCPEA-PLEAKDVILTSGCSQAIDLCLAVL-ANPGQ 143
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P + LY       G  +  Y L     W ++  +++  ++   A       L+V
Sbjct: 144 NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTA------CLIV 197
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
            NP NP G V ++ + + I+    ++ + +LADE+Y + V+
Sbjct: 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF 238

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIRSENDGILCP 221
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+ +  M LL     D ++  
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--DPGDEVIVF 131
Query: 222 IPQYPLYSASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
            P +  Y   I L GGT+  V  ++ +     LE  E    L   K K     A+++ +P
Sbjct: 132 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVE---GLLVGKTK-----AVLINSP 183
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            NPTG V   E    +V   KK    +++DEVY   VY  E  F S   VS
Sbjct: 184 NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTSILDVS 232

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204
           +E A   L+Q   R    Y  + G   LR+ IA  ++  +G     ++I +T+G   ++ 
Sbjct: 49  VEAAKAALEQGKTR----YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104
Query: 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264
            +M  +I    D ++ P P +  Y   + L  GT V       T + +   ++++ +   
Sbjct: 105 NLMLAMIEP-GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP- 162
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
                  + LV   P NPTG V   +  RAI     + GL +L+DE+Y++ +Y
Sbjct: 163 -----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY 210

>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
           D  DI   +G  PA+ + +Q   + E + +L   P YP ++ S+ L+   LV   L E  
Sbjct: 88  DKEDIVFVEGVVPAISIAIQAFTK-EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEEN 146
Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
           G      E   QLE    +   V+  ++ NP NP G+V   E    I   C+K  ++L++
Sbjct: 147 GLFQIDFE---QLENDIVEN-DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVS 202
Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343
           DE++Q+      +   SF  VS       KD +LV
Sbjct: 203 DEIHQDLTLFGHEHV-SFNTVSPDF----KDFALV 232

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 14/211 (6%)
Query: 107 PQS-LGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH 165
           PQS L Q   T F ++ AL      ++ S  QG    D      + L     +    Y+ 
Sbjct: 8   PQSKLPQLGTTIFTQMSALAQQHQAINLS--QGFPDFDGPRYLQERLAHHVAQGANQYAP 65
Query: 166 SQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ 224
             G++ LR+ IA   E   G+  D + DI +T GA+ A++  +  L+R+  D ++C  P 
Sbjct: 66  MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRN-GDEVICFDPS 124
Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPT 283
           Y  Y+ +IAL GG +            L+    +   +   A       LV++N P NP+
Sbjct: 125 YDSYAPAIALSGGIV--------KRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS 176
Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
             V  + +  A+        + +++DEVY+ 
Sbjct: 177 ATVWQQADFAALWQAIAGHEIFVISDEVYEH 207

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG-W 250
           DI   DG  PA+ + +Q     + D +L   P Y  ++ +I L+   LV   L    G +
Sbjct: 121 DILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRF 179
Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
            ++  +++K +         V+  ++ +P NP G+V   ++   I + CKK G++L++DE
Sbjct: 180 EIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDE 234
Query: 311 VYQE 314
           ++Q+
Sbjct: 235 IHQD 238

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G   A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G   A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           TG V  +E   A+     +    L++DE+Y+  +Y
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
           D+I+      D +   A   Y+ +QG    R  IA  +    G   + ++++ T GA+ +
Sbjct: 55  DTIKELVTDYDSV---ALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAAS 111
Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
           + +  + L     D  +   P +P Y   +   G  LV    D    + ++   +++++ 
Sbjct: 112 LSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERIN 170
Query: 263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG------LVLLADEVYQENV 316
           A        R +++ +P NP+G V +EE  + + D  +K+       + ++ADE Y+E V
Sbjct: 171 A------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224
Query: 317 Y 317
           Y
Sbjct: 225 Y 225

>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 201 PAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSE 256
           P+V  M+  LIR  ++   G++   P Y  +  +I  +  T++P  L+ +A GW  +   
Sbjct: 94  PSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMG- 152
Query: 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316
              +LEA  AK    + +++ +P NPTG+V   +    + D C++ G+ +++DE++ + V
Sbjct: 153 ---KLEAVLAKP-ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMV 208
Query: 317 Y 317
           +
Sbjct: 209 W 209

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 23/157 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPAD--PNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           Y+ S+GI  LR+ I+     +D + AD  P++I +T G+S  +   +  +I  + D +L 
Sbjct: 62  YTDSRGILELREKISEL--YKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLI 118
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
             P YP Y   I   G    P + D    + +E+ E     EA   K    +A+++ +P 
Sbjct: 119 QNPCYPCYKNFIRFLGAK--PVFCD----FTVESLE-----EALSDK---TKAIIINSPS 164
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           NP G+V+     R I +F  +    +++DE+Y   VY
Sbjct: 165 NPLGEVI----DREIYEFAYENIPYIISDEIYNGLVY 197

>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           AY+  +G  G+RD +A  + A  G P D  D + +T G   A+ + +   + +  D +  
Sbjct: 73  AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAI 131
Query: 221 PIPQYPLYSASIALHGGTLVPYYLD----EATGWGLETSEVKKQLEAAKAKGITVRALVV 276
             P Y      +    G  VP  LD    + T  GL+ + +++  +A        R  + 
Sbjct: 132 VQPDYFANRKLVEFFEGEXVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLF 185
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
            NP NP G V + E    I     + G  ++AD++Y    Y      H
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH 233

>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEAR-DGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI-- 218
           Y  + G+  LR   A  ++ R DG   D  N+I    G+  A+   +Q ++   +DGI  
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 219 --LCPIPQYPLYSASIALHGGTL------VPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270
             + P P Y +Y  +  L GG +       P +  +   W   + EV K+          
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPD---WRSISEEVWKR---------- 168
Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            + + V +P NP+G VL  +  + + D   K G ++ +DE Y E  +   K     +  +
Sbjct: 169 TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAA 228
Query: 331 RSMGYGEKDISLVSFQSVS 349
           +    G     L+ F S+S
Sbjct: 229 Q---LGRSRQKLLXFTSLS 244

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 137 QGLFSAD----SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND 192
           QG FS      +I+ A + LD IP      YS ++G   L +++               +
Sbjct: 64  QGFFSYSPPQFAIKEAQKALD-IP--MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAEN 120
Query: 193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV------PYYLDE 246
           + +T GA+  +   +  L+ +  D ++   P +  Y  +I L GG +V      P  LD+
Sbjct: 121 VTVTTGANEGILSCLMGLLNA-GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQ 179
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
               G E +   +Q E  KA     +A+++  P NP G+V   E    + + C K  +V+
Sbjct: 180 RNTRGEEWTIDFEQFE--KAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVI 237
Query: 307 LADEVYQ 313
           ++DEVY+
Sbjct: 238 ISDEVYE 244

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 189 DPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-- 245
           DPN+ I +  GA  ++   +Q L+    D ++  +P Y  Y   + + G   VP ++   
Sbjct: 83  DPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGA--VPVFIPLR 139
Query: 246 ---------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
                     ++ W  +  E++ +  +        +A+++  P NP G+V   +  + I 
Sbjct: 140 SKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIA 193
Query: 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
           D C K   + ++DEVY+  VY      H+  K++   G  E+ I++ S
Sbjct: 194 DLCVKHDTLCISDEVYEWLVYTG----HTHVKIATLPGMWERTITIGS 237

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 189 DPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-- 245
           DPN+ I +  GA  ++   +Q L+    D ++  +P Y  Y   + + G   VP ++   
Sbjct: 83  DPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGA--VPVFIPLR 139
Query: 246 ---------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
                     ++ W  +  E++ +  +        +A+++  P NP G+V   +  + I 
Sbjct: 140 SKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIA 193
Query: 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
           D C K   + ++DEVY+  VY      H+  K++   G  E+ I++ S
Sbjct: 194 DLCVKHDTLCISDEVYEWLVYTG----HTHVKIATLPGMWERTITIGS 237

>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 151 ILDQIPGRATGA-YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           I+D +  R     Y ++       ++I   +  R  +      +  + G  PA+ +++  
Sbjct: 50  IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109
Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
           L ++ ND I+   P Y  +++ +  +   L+   L +     LE        E  + K  
Sbjct: 110 LTKA-NDKIMIQEPVYSPFNSVVKNNNRELIISPLQK-----LENGNYIMDYEDIENKIK 163
Query: 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
            V+  ++ NP NP G+V  ++  + + D C K  + +++DE++ +
Sbjct: 164 DVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD 208

>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGIL-CPIPQYPLYSASIALHG--GTLVPYYLDE 246
           P  + ++ GA   + ++++       D IL CP P Y +YS S    G     VP  LD 
Sbjct: 75  PEQVLVSRGADEGIELLIRAFCEPGKDAILYCP-PTYGMYSVSAETIGVECRTVPT-LD- 131
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
              W L+   +  +L+        V+ + V +P NPTGQ++  ++ R +++  + + +V 
Sbjct: 132 --NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV- 181
Query: 307 LADEVYQE 314
           +ADE Y E
Sbjct: 182 VADEAYIE 189

>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR  IA       G   DP  + +T G+S    +    L  S  D +    
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDS-GDRVGIGA 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YP Y   +   G  LVP  L  A        E + Q   A   G+ +  L V +P NP
Sbjct: 123 PGYPSYRQILRALG--LVPVDLPTA-------PENRLQPVPADFAGLDLAGLXVASPANP 173
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
           TG  L      A+++  + +G   ++DE+Y 
Sbjct: 174 TGTXLDHAAXGALIEAAQAQGASFISDEIYH 204

>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGIL-CPIPQYPLYSASIALHG--GTLVPYYLDE 246
           P  + ++ GA   + ++++       D IL CP P Y  YS S    G     VP  LD 
Sbjct: 75  PEQVLVSRGADEGIELLIRAFCEPGKDAILYCP-PTYGXYSVSAETIGVECRTVPT-LD- 131
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
              W L+   +  +L+        V+ + V +P NPTGQ++  ++ R +++  + + +V 
Sbjct: 132 --NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV- 181
Query: 307 LADEVYQE 314
           +ADE Y E
Sbjct: 182 VADEAYIE 189

>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 183 RDGFPADPNDIFLTDGASPAV----HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
           +D   A+  D+F T+G + A+    H + +  +  + D I    P +  Y     L    
Sbjct: 157 KDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYE 216
Query: 239 LVPYYLD--EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
           LV   L   E   W +E +E++K       K  +++AL+V+NP NPT +        AI 
Sbjct: 217 LVEVDLHSYEKNDWEIEPNEIEK------LKDPSIKALIVVNPTNPTSKEFDTNALNAIK 270
Query: 297 DFCKKE-GLVLLADEVYQENVYVPEKK 322
              +K   L +++DEVY    +VP  K
Sbjct: 271 QAVEKNPKLXIISDEVY--GAFVPNFK 295

>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAV-HMMMQLLIRSENDG 217
           T  YS S+GI  LR  I+     R     DP ++  +T G+   + H+M+  L     D 
Sbjct: 68  THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGDT 125
Query: 218 ILCPIPQYP--LYSASIA---LHGGTLVPYYLDEATGWGLE-TSEVKKQLEAAKAKGITV 271
           IL P P YP  +Y A IA   +    LVP         G++  +E+++ +  +  K    
Sbjct: 126 ILVPNPSYPIHIYGAVIAGAQVRSVPLVP---------GIDFFNELERAIRESIPKP--- 173
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331
           R +++  P NPT Q +  +    +V   K+  ++++ D  Y + VY        +K  S 
Sbjct: 174 RMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY------DGWKAPSI 227
Query: 332 SMGYGEKDISLVSFQSVSK 350
               G KDI+ V F ++SK
Sbjct: 228 MQVPGAKDIA-VEFFTLSK 245

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212
           D +  + T  + H + ++ L    +  ++ R   P    ++ +T GA  A++  +Q  + 
Sbjct: 67  DPLANQYTRGFGHPRLVQALSKLYSQLVD-RTINPM--TEVLVTVGAYEALYATIQGHV- 122
Query: 213 SENDGILCPIPQYPLYSASIALHGGT--LVPYYLDEATG------WGLETSEVKKQLEAA 264
            E D ++   P +  Y   +   GG    +P   ++  G      W L+ +E++      
Sbjct: 123 DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
                  + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+ P
Sbjct: 183 ------TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 231

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212
           D +  + T  + H + ++ L    +  ++ R   P    ++ +T GA  A++  +Q  + 
Sbjct: 67  DPLANQYTRGFGHPRLVQALSKLYSQLVD-RTINPM--TEVLVTVGAYEALYATIQGHV- 122
Query: 213 SENDGILCPIPQYPLYSASIALHGGT--LVPYYLDEATG------WGLETSEVKKQLEAA 264
            E D ++   P +  Y   +   GG    +P   ++  G      W L+ +E++      
Sbjct: 123 DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
                  + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+ P
Sbjct: 183 ------TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 231

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW 250
           +++ L  G S  + M +  +  +  D  L P P +P Y      +G  +  Y       W
Sbjct: 105 DNVVLCSGGSHGILMAITAICDA-GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 163
Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
             +  E+++       K    + L+V NP NP G   + ++   IV   ++  L L +DE
Sbjct: 164 EADLDEIRR------LKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE 217
Query: 311 VYQENVYVPEKKFHSFKKVS 330
           +Y   V+  +    +F  V+
Sbjct: 218 IYAGMVFKGKDPNATFTSVA 237

>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 21/234 (8%)
Query: 119 REVLALCDHPSILDRS---ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           RE+L L   P IL  +       LF  +    A   + +  G     YS ++G   LR  
Sbjct: 23  RELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF 82
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           +A  I  R      P ++ +T G+  A+ ++ ++ +  E   +L   P Y     +  L 
Sbjct: 83  VAEWIGVR------PEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQ 135
Query: 236 GGTLVPYYLDEATGW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
           G    P +L    G  G +   +++ L+  + + + +    + +  NPTG +     ++ 
Sbjct: 136 G----PRFLTVPAGEEGPDLDALEEVLKRERPRFLYL----IPSFQNPTGGLTPLPARKR 187
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           ++    + GLV++ D+ Y+E +Y  E +  S  +++R  GY    I L SF  V
Sbjct: 188 LLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELAREAGY-PGVIYLGSFSKV 239

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 189 DP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DE 246
           DP  ++ +T GA+ A+   +  L+   ++ +L   P Y  YS  +A+ G   V   L  +
Sbjct: 84  DPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIE-PFYDSYSPVVAMAGAHRVTVPLVPD 142
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             G+ L+   +++ +          RAL++ +P NPTG VL+     AI +      LV+
Sbjct: 143 GRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVV 196
Query: 307 LADEVYQENVY 317
           + DEVY+  V+
Sbjct: 197 ITDEVYEHLVF 207

>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 195 LTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLE 253
              G  PA+   ++    S  D IL   P Y  + + I  +G  ++   L  E + + + 
Sbjct: 90  FASGVVPAISAXVRQFT-SPGDQILVQEPVYNXFYSVIEGNGRRVISSDLIYENSKYSVN 148
Query: 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
            ++++++L        +VR  V  NP NP G   +EE  + I + C K  ++L++DE++ 
Sbjct: 149 WADLEEKLATP-----SVRXXVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG 203
Query: 314 ENVYVPE 320
           + V   E
Sbjct: 204 DLVLTDE 210

>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG   LR+ +A+      G  AD  +IF++DG+   +   +Q++  S+   +    
Sbjct: 107 YGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDI-ARIQMMFGSKPT-VAVQD 162
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK---------KQLEAAKAKGITVRA 273
           P YP+Y  +  + G T       +  G G +  E             L  AK   I    
Sbjct: 163 PSYPVYVDTSVMMGMT------GDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDI---- 212
Query: 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
           +   +P NPTG          +V+F +K G +L+ D  Y   +  P+
Sbjct: 213 IFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD 259

>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL 252
           I L +GAS  + + + L      + IL  +P Y  Y  +   HG ++V  YLDE     +
Sbjct: 81  IVLGNGASEIIELSISLF-----EKILIIVPSYAEYEINAKKHGVSVVFSYLDE--NMCI 133
Query: 253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           +  ++  +++        V ++++ NP NP G ++ +E    ++   +++   ++ DE +
Sbjct: 134 DYEDIISKID-------DVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAF 186
Query: 313 QENVYVPEKKF 323
            E    P   F
Sbjct: 187 IEFTGDPSSSF 197

>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 42/216 (19%)
Query: 119 REVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIPGRATG--------AYSHSQGI 169
           RE+  +  HP++    +   L + D+ E    QI   +   A G         Y   QG 
Sbjct: 59  RELEHIEKHPNV----QLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGN 114
Query: 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           K LR  IA     RD      N++F++DGA   +  + QLL+ S N  I    P +P Y 
Sbjct: 115 KTLRKAIAETF-YRD-LHVKSNEVFVSDGAQSDISRL-QLLLGS-NVTIAVQDPTFPAYI 170
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-----------GITVRALVVI- 277
            S  + G T            G    + KK                    +T R  V+  
Sbjct: 171 DSSVIIGQT------------GHFHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFF 218
Query: 278 -NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
            +P NPTG V + +    +VDF K  G +++ D  Y
Sbjct: 219 CSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAY 254

>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 7/152 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +        N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVXF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPG 280
           P YP Y  S  + G T   +  D      +E      +           R  ++   +P 
Sbjct: 150 PSYPAYVDSSVIXGQT-GQFNTDVQKYGNIEYXRCTPENGFFPDLSTVGRTDIIFFCSPN 208
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           NPTG     E    +V+F KK G +++ D  Y
Sbjct: 209 NPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	1e-153
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	1e-132
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	1e-40
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	8e-38
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	9e-37
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	2e-32
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	4e-32
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	1e-29
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	1e-29
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	3e-29
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	1e-27
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	2e-26
3ele_A	398	Amino transferase; RER070207001803, structural gen	5e-26
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	5e-26
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	3e-24
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	6e-24
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	6e-24
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	1e-23
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	2e-23
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	2e-23
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	3e-23
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	3e-23
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	4e-23
3nra_A	407	Aspartate aminotransferase; structural genomics, j	4e-23
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	4e-23
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	7e-23
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	8e-23
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	5e-22
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	5e-22
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	2e-21
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	9e-21
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	1e-20
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	2e-20
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	3e-20
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	5e-20
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	2e-19
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	3e-19
1vp4_A	425	Aminotransferase, putative; structural genomics, j	7e-19
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	7e-18
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	8e-17
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	2e-16
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	7e-16
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	8e-15
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	2e-14
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	4e-14
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	5e-14
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	1e-13
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	1e-13
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	1e-13
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	2e-13
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	2e-13
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	4e-13
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	4e-13
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	8e-13
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	1e-12
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	8e-12
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	2e-11
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	9e-11
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	4e-10
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	4e-09
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	7e-09
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	9e-09
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	4e-07
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	4e-06
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	4e-06
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	5e-06
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	4e-05
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	1e-04
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	2e-04
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	2e-04
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	3e-04
3rq1_A	418	Aminotransferase class I and II; structural genomi	5e-04

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  439 bits (1131), Expect = e-153
 Identities = 238/311 (76%), Positives = 266/311 (85%)

Query: 43  PSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYC 102
              +      +  + VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYC
Sbjct: 10  HHGTDDDDKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYC 69

Query: 103 NIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGA 162
           NIGNPQSLGQQP+TFFREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGA
Sbjct: 70  NIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGA 129

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHSQGI GLRD IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PI
Sbjct: 130 YSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPI 189

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           PQYPLYSASIALHGG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNP
Sbjct: 190 PQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TGQVLAEENQ  IV FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ L
Sbjct: 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPL 309

Query: 343 VSFQSVSKGRY 353
           VS+QSVSKG Y
Sbjct: 310 VSYQSVSKGYY 320

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  386 bits (992), Expect = e-132
 Identities = 135/315 (42%), Positives = 192/315 (60%), Gaps = 11/315 (3%)

Query: 42  SPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY 101
           S            ++T++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++ 
Sbjct: 9   SGVDLGTENLYFQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIR 67

Query: 102 CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATG 161
            NIG+ Q++GQQPITF R+V+ALC +P++LD       F  D+ +RA +IL    G + G
Sbjct: 68  ANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLG 123

Query: 162 AYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDG 217
           +YS SQG+  +R+ +AA I  RDG  PADP++I+LT GAS  +  ++++L+        G
Sbjct: 124 SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTG 183

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           ++ PIPQYPLYSA I+      V YYLDE   W L  +E+++ ++ AK      + L +I
Sbjct: 184 VMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK-DHCDPKVLCII 242

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG- 336
           NPGNPTGQV + +    ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG   
Sbjct: 243 NPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEY 302

Query: 337 EKDISLVSFQSVSKG 351
             ++ L SF S SKG
Sbjct: 303 SSNVELASFHSTSKG 317

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  146 bits (372), Expect = 1e-40
 Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 62/314 (19%)

Query: 42  SPSSSSMAPTSSPAITVDSLNP--KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEI 99
             S   +   +    ++ S+ P     K    +R  IV   +        NP       +
Sbjct: 7   HSSGVDLGTENLYFQSMWSVRPSDMAKKTFNPIRA-IVDNMKVKP-----NPNK----TM 56

Query: 100 LYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP-GR 158
           +  +IG+P   G                             +   + +A  + D +  G+
Sbjct: 57  ISLSIGDPTVFG-----NLP---------------------TDPEVTQA--MKDALDSGK 88

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
             G Y+ S G    R+ IA+        P +  D+ LT G S A+ + + +L       I
Sbjct: 89  YNG-YAPSIGFLSSREEIASYYH-CPEAPLEAKDVILTSGCSQAIDLCLAVLAN-PGQNI 145

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVV 276
           L P P + LY       G  +  Y L     W +   +   QLE      I      L+V
Sbjct: 146 LVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEI-DLK---QLEYL----IDEKTACLIV 197

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V ++ + + I+    ++ + +LADE+Y + V+  + K+     +S      
Sbjct: 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF-SDCKYEPLATLS------ 250

Query: 337 EKDISLVSFQSVSK 350
             D+ ++S   ++K
Sbjct: 251 -TDVPILSCGGLAK 263

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  139 bits (352), Expect = 8e-38
 Identities = 63/292 (21%), Positives = 116/292 (39%), Gaps = 66/292 (22%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R  +V  A+ L+++           +++  NIG+P                
Sbjct: 15  RALSVEYAIRD-VVLPARELEKKGI---------KVIRLNIGDPVKFD------------ 52

Query: 124 LCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEA 182
                           F   + ++ A      I       Y  S+G+  LR  I    + 
Sbjct: 53  ----------------FQPPEHMKEA--YCKAIK-EGHNYYGDSEGLPELRKAIVEREKR 93

Query: 183 RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLV 240
           ++G    P+D+ +T   + A+ ++   L+   + G  IL P P YP Y+  +  +GG  V
Sbjct: 94  KNGVDITPDDVRVTAAVTEALQLIFGALL---DPGDEILVPGPSYPPYTGLVKFYGGKPV 150

Query: 241 PYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDF 298
            Y   E   W     +    +       IT   +A+ VINP NPTG +  ++    I++ 
Sbjct: 151 EYRTIEEEDWQP-DID---DIRKK----ITDRTKAIAVINPNNPTGALYDKKTLEEILNI 202

Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
             +  + +++DE+Y    Y  E +  S   ++       KD+ ++    +SK
Sbjct: 203 AGEYEIPVISDEIYDLMTY--EGEHISPGSLT-------KDVPVIVMNGLSK 245

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  136 bits (345), Expect = 9e-37
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 23/205 (11%)

Query: 157 GRATGAYSHSQGIKGLRDTIAA-----GIEARD-GFPADPNDIFLTDGASPAVHMMMQLL 210
               G Y  + G    R+ +A       +   +       +++ L  G S  + M +  +
Sbjct: 66  QECNG-YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI 124

Query: 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270
                D  L P P +P Y      +G  +  Y       W     +   ++         
Sbjct: 125 CD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA-DLD---EIRRL----KD 175

Query: 271 --VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
              + L+V NP NP G   + ++   IV   ++  L L +DE+Y   V+  +    +F  
Sbjct: 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT- 234

Query: 329 VSRSMGYGEKDISLVSFQSVSKGRY 353
              S+   E  +  V     +K   
Sbjct: 235 ---SVADFETTVPRVILGGTAK-NL 255

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score =  124 bits (314), Expect = 2e-32
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 15/196 (7%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---END 216
              Y +  G+  L+   +   +              T G+     +   +  R+      
Sbjct: 75  ASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREY 134

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRAL 274
           G L   P + L      + G     + L E  G  L     +K          T    ++
Sbjct: 135 GTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR----EKLESYL----QTGQFCSI 186

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           +  NP NPT Q + +E  R I +   K  ++++ D  Y    +  +   H  + + +   
Sbjct: 187 IYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR-KDYSHPGEPLYQPSV 245

Query: 335 YGEKDISLVSFQSVSK 350
               D  ++   S SK
Sbjct: 246 ANYTDNYIL-ALSSSK 260

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score =  123 bits (312), Expect = 4e-32
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   R  IA  +E   G     DP  + +  GA+ A   ++  L     D  L 
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLV 137

Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  L ++  ++++ F  +  + L+ DE+Y   V+    +F S  ++         +
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEMTYCN 256

Query: 340 ISLV 343
             LV
Sbjct: 257 KDLV 260

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  117 bits (295), Expect = 1e-29
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 5/180 (2%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   +  +   +    G     DPN + LT GA+ A    +  L     + +L 
Sbjct: 82  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLI 140

Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP +   +    G  +VP +   + G+ +  + +++  + A+ + + V+ ++V NP
Sbjct: 141 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 200

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  +       ++ F + +G+ L++DE+Y    +     F S  +V +     E  
Sbjct: 201 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF-SSPSFISVMEVLKDRNCDENS 259

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score =  116 bits (292), Expect = 1e-29
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR  IA       G   DP  + +T G+S    +    L     D +    
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGA 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YP Y   +   G   V                           G     L+V +P NP
Sbjct: 123 PGYPSYRQILRALGLVPVDLPTAPENRLQP-VPA---DFAGLDLAG-----LMVASPANP 173

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
           TG +L      A+++  + +G   ++DE+Y    Y  E K  + 
Sbjct: 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY--EAKAVTA 215

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score =  115 bits (291), Expect = 3e-29
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
            YSHS GI  LR+  A+  + R      P ++ +T+G S A+     ++  +  D IL  
Sbjct: 74  YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL 132

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P Y  Y+A   + G  L+P       G+ +      + LE+     I    + +V+ NP
Sbjct: 133 EPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-----PQNLESF----INERTKGIVLSNP 183

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331
            NPTG V  ++  R +V+  ++ GL L+ DEVY E V+    +F S   +  
Sbjct: 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF--RGEFASALSIES 233

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score =  110 bits (278), Expect = 1e-27
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIRSENDGIL 219
             Y  S   + LR       + R       N++  T G+   + +    +L   +N  I 
Sbjct: 53  NIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIA 112

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN- 278
            P P Y +Y  +        +   L +   +    +E     E  +        LV++N 
Sbjct: 113 YPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNE----KELQEVD------LVILNS 162

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NPTG+ L+ E   + V    K   +L+ DE Y E +Y       S  +     G    
Sbjct: 163 PNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IY-ENTPPPSLLEACMLAGNEAF 220

Query: 339 DISLVSFQSVSKGRY 353
              ++   S+SK R 
Sbjct: 221 KN-VLVIHSLSK-RS 233

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  107 bits (269), Expect = 2e-26
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 16/159 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   +G    + +++            P  I  T+GA+ A  +++  LI    D ++   
Sbjct: 59  YGWIEGSPAFKKSVSQLYTG-----VKPEQILQTNGATGANLLVLYSLI-EPGDHVISLY 112

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P Y          G  +  + ++E  GW     E   +L       I    + + + N  
Sbjct: 113 PTYQQLYDIPKSLGAEVDLWQIEEENGWLP-DLE---KLRQL----IRPTTKMICINNAN 164

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
           NPTG V+       +V+   + G  +L+DEVY+    + 
Sbjct: 165 NPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD 203

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score =  106 bits (267), Expect = 5e-26
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 19/181 (10%)

Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
           +   +++      A   Y+ +QG    R  IA  +    G   + +++++T GA+ ++ +
Sbjct: 55  DTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114

Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAA 264
             + L     D  +   P +P Y   +   G  LV    D       E  ++    LE  
Sbjct: 115 CFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT------EHFQIDFDALEER 168

Query: 265 KAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENV 316
               I    R +++ +P NP+G V +EE  + + D  +K        + ++ADE Y+E V
Sbjct: 169 ----INAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224

Query: 317 Y 317
           Y
Sbjct: 225 Y 225

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score =  106 bits (266), Expect = 5e-26
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 25/166 (15%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S+GI  LR+ I+   + +      P++I +T G+S  +   +  +I  + D +L   
Sbjct: 62  YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQN 120

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P YP Y   I   G   V                    LE A    ++   +A+++ +P 
Sbjct: 121 PCYPCYKNFIRFLGAKPVFCDFTVE------------SLEEA----LSDKTKAIIINSPS 164

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
           NP G+V+  E    I +F  +    +++DE+Y   VY  E K +S 
Sbjct: 165 NPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVY--EGKCYSA 204

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score =  101 bits (254), Expect = 3e-24
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 19/196 (9%)

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSEND 216
            T  YS S+GI  LR  I+     R     DP     +T G+     H+M+  L     D
Sbjct: 67  DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGD 124

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P YP++     + G  +    L     +  E     ++    K +      +++
Sbjct: 125 TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES-IPKPR------MMI 177

Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           +  P NPT Q +  +    +V   K+  ++++ D  Y + VY    K  S  +V      
Sbjct: 178 LGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIMQVP----- 231

Query: 336 GEKDISLVSFQSVSKG 351
           G KDI+ V F ++SK 
Sbjct: 232 GAKDIA-VEFFTLSKS 246

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score =  100 bits (251), Expect = 6e-24
 Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
           T  Y          +  A   E R G   DP        G+     H+++ L      D 
Sbjct: 56  TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--EPEDL 113

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           +L P   YP Y  +  +         L E      +   V + +   +AK      ++++
Sbjct: 114 LLLPEVAYPSYFGAARVASLRTFLIPLRE--DGLADLKAVPEGV-WREAK------VLLL 164

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPTG V         +   +K GL L+ D  Y + VY  E +  S   +      G
Sbjct: 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVY--EGEAPSPLALP-----G 217

Query: 337 EKDISLVSFQSVSKG 351
            K+   V   S+SK 
Sbjct: 218 AKERV-VELFSLSKS 231

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score =  100 bits (252), Expect = 6e-24
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 21/195 (10%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
              Y    G +  +  I    + +     D  D + +  G     V +   ++  +  D 
Sbjct: 78  NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--NPGDY 135

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           +L P P Y  Y A + L  G  VP  L+    +  + S+V  Q+   K K      L+ +
Sbjct: 136 VLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQI-IDKTK------LIYL 187

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
             P NPTG    +E     +   K     ++ D  Y    +  + K  S           
Sbjct: 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGF--DAKNPSILASE-----N 240

Query: 337 EKDISLVSFQSVSKG 351
            KD++ +   S+SKG
Sbjct: 241 GKDVA-IEIYSLSKG 254

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score =  100 bits (250), Expect = 1e-23
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 13/163 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    G   LR  IAA      G   DP  ++ +T GA+ A+   +  L+      +L  
Sbjct: 58  YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE-PGSEVLLI 116

Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
            P Y  YS  +A+ G   V   L  +  G+ L+       L  A    +T   RAL++ +
Sbjct: 117 EPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA----LRRA----VTPRTRALIINS 168

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           P NPTG VL+     AI +      LV++ DEVY+  V+   +
Sbjct: 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR 211

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score = 99.2 bits (248), Expect = 2e-23
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 13/162 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G++ LR+ IA   E   G+  D  +DI +T GA+ A++  +  L+R   D ++C 
Sbjct: 63  YAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR-NGDEVICF 121

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P Y  Y+ +IAL GG +    L +   + ++  E      A     ++   R +++  P
Sbjct: 122 DPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE----FAAL----LSERTRLVILNTP 172

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
            NP+  V  + +  A+        + +++DEVY+   +  + 
Sbjct: 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG 214

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 15/172 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS ++G   L +++               ++ +T GA+  +   +  L+    D ++   
Sbjct: 91  YSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-AGDEVIVFE 149

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK------KQLEAAKAKGIT--VRAL 274
           P +  Y  +I L GG +V   ++         +  +      +Q E A    IT   +A+
Sbjct: 150 PFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA----ITSKTKAV 205

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
           ++  P NP G+V   E    + + C K  +V+++DEVY+   +     F   
Sbjct: 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI 255

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 24/226 (10%)

Query: 110 LGQQPITFFREVLALC-DHPSILDRSETQGLFSADS----IERAWQILDQIPGRATGAYS 164
           L       + E + L  +H  +   +  QG          +E     +          Y+
Sbjct: 10  LDGIDYNPWVEFVKLASEHDVV---NLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYT 64

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
            + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++   P
Sbjct: 65  KTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEP 123

Query: 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEV------KKQLEAAKAKGIT--VRALV 275
            +  Y     + GG  V   L        E            +L        T   +ALV
Sbjct: 124 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK----FTSRTKALV 179

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           +  P NP G+V + E    +   C++  +V + DEVYQ  VY   +
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score = 98.4 bits (246), Expect = 3e-23
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 26/190 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y    G+  LR  ++           D  +IF++DGA   +  ++       N  +    
Sbjct: 71  YGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLLSFF--GPNQTVAIQD 125

Query: 223 PQYPLYSASIALHGGTLVPYY-LDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
           P YP Y     L G   +      +   +  E  E                 ++ +  P 
Sbjct: 126 PSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE------DTHID------ILCLCSPN 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG VL ++  RAIV +  +  +++L D  Y   +  P     S  ++        +  
Sbjct: 174 NPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS-LPKSIFEIP-----DARFC 227

Query: 341 SLVSFQSVSK 350
           + +   S SK
Sbjct: 228 A-IEINSFSK 236

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 98.5 bits (246), Expect = 4e-23
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 13/184 (7%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV 203
           +       +     A   Y+   G   L   ++           +P  ++ +T GA  A+
Sbjct: 56  LNALAAAANSPDPLAN-QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114

Query: 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KK 259
           +  +Q  +  E D ++   P +  Y   +   GG      L      G  +S        
Sbjct: 115 YATIQGHVD-EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNN 173

Query: 260 QLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +LEA          + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+
Sbjct: 174 ELEAL----FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF 229

Query: 318 VPEK 321
            P +
Sbjct: 230 EPFE 233

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score = 98.4 bits (246), Expect = 4e-23
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+  +G  G+RD +A  + A  G P D  D + +T G   A+ + +   + +  D +   
Sbjct: 74  YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIV 132

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK---KQLEAAKAKGIT--VRALVV 276
            P Y      +    G +VP  LD  +    + +        LE A         R  + 
Sbjct: 133 QPDYFANRKLVEFFEGEMVPVQLDYVSA---DETRAGLDLTGLEEA----FKAGARVFLF 185

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
            NP NP G V + E    I     + G  ++AD++Y    Y     +   
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA-SYTHL 234

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   +  + + +L P
Sbjct: 59  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIP 117

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P +  Y+ ++ L GG  V     E   + L   +   +L+      +T   RAL++ +P
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRL-NVD---ELKKY----VTDKTRALIINSP 169

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
            NPTG VL +++   I DF  +  L++++DEVY+  +Y  + + +S 
Sbjct: 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD-DARHYSI 215

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 97.2 bits (243), Expect = 7e-23
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   G+  LR+ +A           +P  + +T GA+ A+++++Q L+    D ++   
Sbjct: 57  YAPPAGLPALREALAEEFAV------EPESVVVTSGATEALYVLLQSLVG-PGDEVVVLE 109

Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
           P + +Y     L G       LD    G+ L+ S     LE A    +T   RAL++  P
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSA----LEKA----LTPRTRALLLNTP 161

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
            NPTG V  E    AI    +   L L++DEVY E  Y    
Sbjct: 162 MNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP 203

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 97.4 bits (243), Expect = 8e-23
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 13/167 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G   L   ++           DPN +I +  GA  ++   +Q L+    D ++  
Sbjct: 57  YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD-PGDEVIIM 115

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-----KQLEAAKAKGIT--VRAL 274
           +P Y  Y   + + G   V   L      G++ +        ++LE+      +   +A+
Sbjct: 116 VPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK----FSSKTKAI 171

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           ++  P NP G+V   +  + I D C K   + ++DEVY+  VY    
Sbjct: 172 ILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT 218

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score = 95.4 bits (238), Expect = 5e-22
 Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 19/209 (9%)

Query: 117 FFREVLALCDHPSIL-------DRSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQ 167
              ++      P  +                  D  +     + +    A     Y   Q
Sbjct: 20  LMEDLNDGLRTPGAIMLGGGNPAHI----PAMQDYFQTLLTDMVESGKAADALCNYDGPQ 75

Query: 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQY 225
           G   L + +A  +    G+  +P +I LT+G+  A   +  L    R++        P  
Sbjct: 76  GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLA 135

Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPT 283
           P Y           + +         L   + K  ++      I      + V  P NPT
Sbjct: 136 PEYIGYADSGLEDDL-FVSARPNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPT 193

Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           G V+ +E    +     +  + L+ D  Y
Sbjct: 194 GNVITDEELMKLDRLANQHNIPLVIDNAY 222

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score = 95.0 bits (237), Expect = 5e-22
 Identities = 37/177 (20%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
           L     +    + + +   ++   Y+ + GI  LR+ +AA ++  D     P +I +T G
Sbjct: 48  LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106

Query: 199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
            + A+ ++ ++LI    D ++   P Y     +    G  +    +D     G+    ++
Sbjct: 107 GTGALDLLGRVLI-DPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLE 162

Query: 259 KQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           ++++  KAKG  V+ +  I    NP G  ++ E ++A+++   K  L+++ D  Y  
Sbjct: 163 EKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNF 219

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 48/296 (16%), Positives = 81/296 (27%), Gaps = 55/296 (18%)

Query: 75  EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRS 134
            I  +   L   L+++   +          GNP       I    E+          D  
Sbjct: 16  GISQLMDDLGDALKSDQPVNML------GGGNPA-----KIDAVNELFLETYKALGNDND 64

Query: 135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF 194
             +   SA                +   YS+ QG     D +         +     +I 
Sbjct: 65  TGKANSSA--------------IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110

Query: 195 LTDGASPAVHMMMQLLIR--------------SENDGILCPIPQYPLYSASIALHGG--- 237
           LT+G+  A   +  L                  +   +L   P+Y  YS           
Sbjct: 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA 170

Query: 238 ---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
               +     D   G+     + +        K   + A+    P NPTG VL +E    
Sbjct: 171 VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAH 230

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
           + +  K+  + L+ D  Y      P   +         + +    I   S    SK
Sbjct: 231 LAEIAKRYDIPLIIDNAYGM--PFPNIIYSDA-----HLNWDNNTILCFSL---SK 276

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG   LR+ +A+      G  AD  +IF++DG+   +   +Q++       +    
Sbjct: 107 YGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDI-ARIQMMF-GSKPTVAVQD 162

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK---QLEAA-KAKGITVRALVVIN 278
           P YP+Y  +  + G T             +  +        L  A +        ++   
Sbjct: 163 PSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTD------IIFFC 216

Query: 279 -PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
            P NPTG          +V+F +K G +L+ D  Y   +  P+    +  ++      G 
Sbjct: 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIP-----GA 270

Query: 338 KDISLVSFQSVSK 350
            +++ +   S SK
Sbjct: 271 DEVA-IETCSFSK 282

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 45/200 (22%), Positives = 71/200 (35%), Gaps = 35/200 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149

Query: 223 PQYPLYSASIALHGGTLV----------PYY--LDEATGWGLETSEVKKQLEAAKAKGIT 270
           P YP Y  S  + G T              Y       G+  + S V +           
Sbjct: 150 PSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGR----------- 198

Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
              +   +P NPTG     E    +V+F KK G +++ D  Y   +   +    S  ++ 
Sbjct: 199 TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DDNPRSIFEIP 256

Query: 331 RSMGYGEKDISLVSFQSVSK 350
                G ++++ +   S S 
Sbjct: 257 -----GAEEVA-METASFSN 270

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 19/198 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEAR-DGFPADPND-IFLTDGASPAVHMMMQLLI----RSEND 216
           Y  + G+  LR   A  ++ R DG   D ++ I    G+  A+   +Q ++         
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            I+ P P Y +Y  +  L GG +  +    A  +  +   + +++   + K      LV 
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIH-FANCPAPSFNPDWRSISEEV-WKRTK------LVF 173

Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           +  P NP+G VL  +  + + D   K G ++ +DE Y E +Y    K     + +  +G 
Sbjct: 174 VCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKPLGCLQAAAQLG- 231

Query: 336 GEKDISLVSFQSVSKGRY 353
             +   L+ F S+SK R 
Sbjct: 232 RSRQK-LLMFTSLSK-RS 247

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+      L+    D ++   
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFS 132

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   I L GGT+       +  +   + E   ++E      +    +A+++ +P 
Sbjct: 133 PVWVSYIPQIILAGGTVNVVETFMSKNFQP-SLE---EVEGL----LVGKTKAVLINSPN 184

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
           NPTG V   E    +V   KK    +++DEVY   VY    +F S   VS
Sbjct: 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY--TDEFTSILDVS 232

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 39/203 (19%), Positives = 91/203 (44%), Gaps = 15/203 (7%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGL 172
           RE+L L +   I+  S   G      F  + I      I+++   +A   Y  ++G   L
Sbjct: 67  RELLKLVETSDII--SLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQ-YGTTKGFTPL 123

Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
           R+T+      +    +  NDI +T G+  A+ ++ ++ +    D ++   P Y     + 
Sbjct: 124 RETLMK-WLGKRYGISQDNDIMITSGSQQALDLIGRVFLN-PGDIVVVEAPTYLAALQAF 181

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEEN 291
             +    +   LD+    G++   ++++L+  K++G  V+ +  +    NP G  + E+ 
Sbjct: 182 NFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDR 238

Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
           ++ +++   +   +++ D+ Y E
Sbjct: 239 RKYLLELASEYDFIVVEDDPYGE 261

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score = 88.7 bits (220), Expect = 2e-19
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
           Y     +  + + I      R+      P++  ++F  +G + A+  + + L  +     
Sbjct: 134 YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKA 193

Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVR 272
            D +   +P +  Y     L    L    +  D +  W         +L+  K   I  +
Sbjct: 194 GDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQY-PDS---ELDKLKDPAI--K 247

Query: 273 ALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSF 326
               +NP NP    + + +   + +   +    L++L D+VY          F S 
Sbjct: 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD----DFQSL 299

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
           Y          + I         +     A+  D+F T+G + A+      L  +    +
Sbjct: 133 YPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKK 192

Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGIT-- 270
            D I    P +  Y     L    LV   L   E   W +       ++E          
Sbjct: 193 GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEI-EPN---EIEKL----KDPS 244

Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHSF 326
           ++AL+V+NP NPT +        AI    +K   L++++DEVY   V      F S 
Sbjct: 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP----NFKSI 297

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score = 86.2 bits (214), Expect = 7e-19
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 15/205 (7%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           RE+L        +  S   G      F    +    + + +     T  YS ++G   L+
Sbjct: 34  REILKFAADKDAI--SFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLK 91

Query: 174 DTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
             I   +E   G    D +++  T G+  A+ ++ +L +  +    +   P Y     + 
Sbjct: 92  QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAF 150

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINP--GNPTGQVLAE 289
             +    V   L++    G++ + ++++L      G   +   + +     NP G   + 
Sbjct: 151 RQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL 207

Query: 290 ENQRAIVDFCKKEGLVLLADEVYQE 314
           E ++A+V+  +K  L ++ D+ Y  
Sbjct: 208 EKRKALVEIAEKYDLFIVEDDPYGA 232

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score = 83.0 bits (206), Expect = 7e-18
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 25/203 (12%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           RE+L L   P IL  S   G     LF  +    A   + +  G     YS ++G   LR
Sbjct: 23  RELLKLTQRPGIL--SFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLR 80

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
             +A  I         P ++ +T G+  A+ ++ ++ +  E   +L   P Y     +  
Sbjct: 81  AFVAEWIGV------RPEEVLITTGSQQALDLVGKVFLD-EGSPVLLEAPSYMGAIQAFR 133

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEEN 291
           L G   +     E    G +   +++ L+  + +       + + P   NPTG +     
Sbjct: 134 LQGPRFLTVPAGEE---GPDLDALEEVLKRERPR------FLYLIPSFQNPTGGLTPLPA 184

Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
           ++ ++    + GLV++ D+ Y+E
Sbjct: 185 RKRLLQMVMERGLVVVEDDAYRE 207

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score = 79.9 bits (198), Expect = 8e-17
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   +   GG +V        G+     E   ++  A    IT   +ALVV +P 
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVP-DPE---RVRRA----ITPRTKALVVNSPN 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
           NPTG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+
Sbjct: 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVA 222

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   LR+ IA  ++  +G     ++I +T+G   ++  +M  +I    D ++ P 
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPA 121

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
           P +  Y   + L  GT V       T + + + E   Q+  A    IT +  L+V N P 
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKV-SPE---QIRQA----ITPKTKLLVFNTPS 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333
           NPTG V   +  RAI     + GL +L+DE+Y++ +Y    +  S    S   
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA 225

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 77.2 bits (191), Expect = 7e-16
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 26/185 (14%)

Query: 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
             L    A     R G+ A P  IF        +++ +          ++ P P YP + 
Sbjct: 61  SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-AQSKVIVPTPAYPPFF 119

Query: 230 ASIALHGGTLVP----YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285
             ++      +       ++      L        +E     G   R++++ NP NP G 
Sbjct: 120 HLLSATQREGIFIDATGGIN------LH------DVEKGFQAG--ARSILLCNPYNPLGM 165

Query: 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345
           V A E    + D   +    +L DE++   V+  + +      VS +       +  ++ 
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGVSDTA----ASVC-ITI 218

Query: 346 QSVSK 350
            + SK
Sbjct: 219 TAPSK 223

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 21/218 (9%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGA 199
            S++  +  L          Y+  QGI+ LRD     +  RD         +   +T+  
Sbjct: 67  SSLDAMFNDLTP---DEIFPYAPPQGIEELRDLWQQKM-LRDNPELSIDNMSRPIVTNAL 122

Query: 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
           +  + ++  L +  ++D IL P   +  Y        G  +  Y          T  + +
Sbjct: 123 THGLSLVGDLFVN-QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVE 181

Query: 260 QLEAAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEG-----LVLLADEVYQ 313
            L++     +    ++++N P NPTG     +    IV+  K        ++ + D+ Y 
Sbjct: 182 ALQSYNKDKV----IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY 237

Query: 314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG 351
              Y  +    S      ++      I  +     +K 
Sbjct: 238 GLFYE-DVYTQSLFTALTNL--HSNAILPIRLDGATKE 272

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 29/182 (15%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
               IA     +     D   +         V  +++       +G++   P Y  +  +
Sbjct: 69  FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE-TGEGVVIHTPAYDAFYKA 127

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I  +  T++P         ++ D              +LEA        + +++ +P NP
Sbjct: 128 IEGNQRTVMPVALEKQADGWFCDMG------------KLEA-VLAKPECKIMLLCSPQNP 174

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG+V   +    + D C++ G+ +++DE++ + V+  E+    +  V+R          L
Sbjct: 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSNVAR-----GDWALL 228

Query: 343 VS 344
            S
Sbjct: 229 TS 230

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score = 71.9 bits (176), Expect = 4e-14
 Identities = 22/182 (12%), Positives = 42/182 (23%), Gaps = 28/182 (15%)

Query: 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
                 R   ++          +        L D I            +   I +  G++
Sbjct: 45  RCTVTIRGCDLMSYFSDMTNLCWFLEPE---LEDAIKDLHGVVGNAATEDRYIVVGTGST 101

Query: 201 PAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
                 +  L          ++   P Y  Y          +  +  D            
Sbjct: 102 QLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD------------ 149

Query: 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
                A           +V +P NP G +        +V+    +   ++ D  Y    Y
Sbjct: 150 -----AWGFDKKGPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVIHDFAYYWPHY 199

Query: 318 VP 319
            P
Sbjct: 200 TP 201

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 71.8 bits (177), Expect = 5e-14
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 29/188 (15%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +    ++   +  D  DI   +G  PA+ + +Q     E + +L   P YP ++ S
Sbjct: 71  LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPPFARS 129

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           + L+   LV          + +D       E      QLE        V+  ++ NP NP
Sbjct: 130 VRLNNRKLVSNSLKEENGLFQID------FE------QLEN-DIVENDVKLYLLCNPHNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V   E    I   C+K  ++L++DE++Q+       +  SF  VS       KD + 
Sbjct: 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNTVSPDF----KDFA- 230

Query: 343 VSFQSVSK 350
           +   S +K
Sbjct: 231 LVLSSATK 238

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 29/188 (15%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +         +     DI   DG  PA+ + +Q     + D +L   P Y  ++ +
Sbjct: 101 LYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYPFART 159

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I L+   LV          + +D              QLE        V+  ++ +P NP
Sbjct: 160 IRLNDHRLVENSLQIINGRFEIDFE------------QLEK-DIIDNNVKIYLLCSPHNP 206

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V   ++   I + CKK G++L++DE++Q+         HS   +  S     KD + 
Sbjct: 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNTLDASY----KDFT- 260

Query: 343 VSFQSVSK 350
           +   S +K
Sbjct: 261 IILSSATK 268

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 29/188 (15%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
            + T+   ++ R  +    + I  T G  PAV   ++       DG++   P Y  +  +
Sbjct: 71  YKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFFMA 129

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I      ++          Y +D              +LE   +K    +AL+  +P NP
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQ------------KLEK-LSKDKNNKALLFCSPHNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V  ++  + I D   K  L+L +DE++ + +  P  +   F+ +   +     D + 
Sbjct: 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQSIDEQL----ADKT- 230

Query: 343 VSFQSVSK 350
           ++F + SK
Sbjct: 231 ITFTAPSK 238

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 45/256 (17%), Positives = 83/256 (32%), Gaps = 44/256 (17%)

Query: 119 REVLALCDHPSILDRSETQGL-------FSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
            +   L      L    T+G         S D +           G     Y    GI  
Sbjct: 23  AKYAELKAKNLSL--DLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIAD 80

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------END 216
           +R+  A  +          + +   DG+S    +M  L+  S               E  
Sbjct: 81  IRELWAEALGL------PADLVVAQDGSSLN--IMFDLISWSYTWGNNDSSRPWSAEEKV 132

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
             LCP+P Y  +       G  ++   + +    G +   V++ ++  + KG+      V
Sbjct: 133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGM----WTV 185

Query: 277 INPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMG 334
              GNPTG   +E+  R + +         ++ D  Y  +    E    H+  + +++ G
Sbjct: 186 PVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG 245

Query: 335 YGEKDISLVSFQSVSK 350
              +   + S    SK
Sbjct: 246 NPNRFWFMSST---SK 258

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 29/188 (15%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
               +A   E         +      G  PA+  M++    S  D IL   P Y ++ + 
Sbjct: 67  YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNMFYSV 125

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I  +G  ++          Y ++ A             LE  K    +VR +V  NP NP
Sbjct: 126 IEGNGRRVISSDLIYENSKYSVNWA------------DLEE-KLATPSVRMMVFCNPHNP 172

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G   +EE  + I + C K  ++L++DE++ + V   ++       V        K+   
Sbjct: 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFTVDWDA----KNWV- 226

Query: 343 VSFQSVSK 350
           VS  S SK
Sbjct: 227 VSLISPSK 234

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 24/152 (15%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L   +A    +          + I   +G + ++  +   L   +    +   P +  Y 
Sbjct: 64  LHQALARHHQV--------PASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYG 112

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            ++A  G  +  + L EA GW L  + ++                + +  P NPTG +  
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD--------CLFLCTPNNPTGLLPE 164

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
               +AI D CK   + L+ DE + +  ++P 
Sbjct: 165 RPLLQAIADRCKSLNINLILDEAFID--FIPH 194

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 36/211 (17%), Positives = 84/211 (39%), Gaps = 33/211 (15%)

Query: 151 ILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           I+D +  R     Y ++       ++I   +  R  +      +  + G  PA+ +++  
Sbjct: 50  IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109

Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVP----------YYLDEATGWGLETSEVKK 259
           L    ND I+   P Y  +++ +  +   L+           Y +D              
Sbjct: 110 L-TKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYE------------ 156

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            +E  K K   V+  ++ NP NP G+V  ++  + + D C K  + +++DE++ + +   
Sbjct: 157 DIEN-KIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL-K 212

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
           + K      +S+      +  + ++  + +K
Sbjct: 213 KHKHIPMASISKEF----EKNT-ITCMAPTK 238

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFP-------ADPNDIFLTDGASPAVHMMMQLLIRSEN 215
           YS S GI  L   +          P           D+ +T G+   +  + +++I +  
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPG 132

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-- 273
           D +L   P Y     S+   G  ++    DE+   G+    ++  L   K +        
Sbjct: 133 DNVLLDEPAYSGTLQSLHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKN 189

Query: 274 ---LVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
               +   P   NPTG  L  E ++ I +  +K   +++ D+ Y  
Sbjct: 190 TPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYF 235

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L  +I     +            I L +GAS  + + + L      + IL  +P Y  Y 
Sbjct: 66  LNKSIENYLKL--------KDIGIVLGNGASEIIELSISLF-----EKILIIVPSYAEYE 112

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            +   HG ++V  YLDE     ++  ++  +++            V+I NP NP G ++ 
Sbjct: 113 INAKKHGVSVVFSYLDE--NMCIDYEDIISKIDDVD--------SVIIGNPNNPNGGLIN 162

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331
           +E    ++   +++   ++ DE + E  +  +       ++  
Sbjct: 163 KEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEIKN 203

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 24/153 (15%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           + +  A   G+         P  + ++ GA   + ++++       D IL   P Y +YS
Sbjct: 63  VIENYAQYAGV--------KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS 114

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            S    G         +   W L+   +  +L+  K        +V + +P NPTGQ++ 
Sbjct: 115 VSAETIGVECRTVPTLD--NWQLDLQGISDKLDGVK--------VVYVCSPNNPTGQLIN 164

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
            ++ R +++  + + +V+  DE Y E  + P+ 
Sbjct: 165 PQDFRTLLELTRGKAIVVA-DEAYIE--FCPQA 194

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 23/206 (11%)

Query: 157 GRATGAYS-HSQGIKGLRDTIAA-------GIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
           G     Y     G+   R   A         +   +    +   + LT      V     
Sbjct: 59  GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTG 118

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
             + S+   ++  +P Y  +   +   G  L+   +      G +       +E      
Sbjct: 119 PWL-SQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDA----VERLAGTD 170

Query: 269 ITVRALVVI-NPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQENVYVPEKKFHSF 326
            +V+ ++ +    NP G+ ++ E  R +           + AD+ Y+ +  V E +    
Sbjct: 171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPV 230

Query: 327 KKVSRSMGYGEKD--ISLVSFQSVSK 350
             V  +   G  D      S    SK
Sbjct: 231 NFVVLARDAGYPDRAFVFAST---SK 253

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 39/188 (20%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
            +        +      +Y  +         L  TI    E      A    I    G +
Sbjct: 74  KQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133

Query: 201 PAVHMMMQLL-------IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE 253
             +H ++  L         +    ++   P YP++             +  + A      
Sbjct: 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAA------ 187

Query: 254 TSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
                                  +V +P NP G +     + A++  CK      + D V
Sbjct: 188 ------NYVNV----SNPEQYIEMVTSPNNPEGLL-----RHAVIKGCK-----SIYDMV 227

Query: 312 YQENVYVP 319
           Y    Y P
Sbjct: 228 YYWPHYTP 235

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 41/220 (18%)

Query: 119 REVLALCDHPSILD------RSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQGIK 170
           R+   L      LD       SE   L  AD +       D      T    Y    GI 
Sbjct: 24  RKFDELKSKNLKLDLTRGKPSSEQ--LDFADELLALPGKGDFKAADGTDVRNYGGLDGIV 81

Query: 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------EN 215
            +R   A  +            +   D +S    +M  ++  S               E 
Sbjct: 82  DIRQIWADLLGV------PVEQVLAGDASSLN--IMFDVISWSYIFGNNDSVQPWSKEET 133

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
              +CP+P Y  + +     G  ++   ++E    G +   V++ ++  + KG+     V
Sbjct: 134 VKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKGM----WV 186

Query: 276 VINPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQE 314
           V    NPTG  + E+  + +           ++ D  Y  
Sbjct: 187 VPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV 226

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           LR  +          PA    + L +G+   + M+     R     ++ P+P + +Y+ S
Sbjct: 72  LRAKLKE----VMQVPAGME-VLLGNGSDEIISMLALAAAR-PGAKVMAPVPGFVMYAMS 125

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEE 290
               G   V   L     + L+   +   +   +        +V +  P NPTG +    
Sbjct: 126 AQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPA------IVYLAYPNNPTGNLFDAA 177

Query: 291 NQRAIVDFC---KKEGLVLLADEVYQE 314
           +  AIV          LV++ DE YQ 
Sbjct: 178 DMEAIVRAAQGSVCRSLVVV-DEAYQP 203

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 32/154 (20%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A    +        D N I +T+G + A + + Q          L  IP +  Y 
Sbjct: 55  LRQMLAKRNSV--------DNNAILVTNGPTAAFYQIAQAF---RGSRSLIAIPSFAEYE 103

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289
            +  ++   +  Y  +E               EA  +    +    + NP NP G++L  
Sbjct: 104 DACRMYEHEVCFYPSNEDI------------GEADFSN---MDFCWLCNPNNPDGRLLQR 148

Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
                +++       VL  D+ Y    +  E+  
Sbjct: 149 TEILRLLNDHPDTTFVL--DQSYVS--FTTEEVI 178

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 21/148 (14%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLY 228
           LRD +AA I  + G     ++++  +G S  +   +Q L++         L   P Y ++
Sbjct: 74  LRDELAAYITKQTGVAVTRDNLWAANG-SNEI---LQQLLQAFGGPGRTALGFQPSYSMH 129

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPGNPTGQV 286
                      +         + ++       ++ A  +    +  +V    P NPTG V
Sbjct: 130 PILAKGTHTEFIAVSRGA--DFRID-------MDVALEEIRAKQPDIVFVTTPNNPTGDV 180

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQE 314
            + ++   I++     G+V++ DE Y E
Sbjct: 181 TSLDDVERIIN--VAPGIVIV-DEAYAE 205

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 27/150 (18%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSA 230
           +   +A         P   +++ L  G           +     +   +   P +  Y A
Sbjct: 56  VMRKLAE----HFSCP--EDNLMLVRG-IDEC---FDRISAEFSSMRFVTAWPGFDGYRA 105

Query: 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
            IA+ G       L +     L+        + ++   +     V+ NP NPTGQ L+  
Sbjct: 106 RIAVSGLRHFEIGLTD--DLLLD---PNDLAQVSRDDCV-----VLANPSNPTGQALSAG 155

Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
               +    ++ G +L+ DE Y +  Y   
Sbjct: 156 ---ELDQLRQRAGKLLI-DETYVD--YSSF 179

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 25/143 (17%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L + I       D      N++ + +GA   +++MM +      D  +   P Y  Y   
Sbjct: 61  LIEKIL---SYLDTDFLSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIF 112

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
               G   +   L +              L   +        + + NP NPTG V   E 
Sbjct: 113 AKAVGAKFLEVPLTK-------------DLRIPEVNVGEGDVVFIPNPNNPTGHVFERE- 158

Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
              I    K    V L DE Y E
Sbjct: 159 --EIERILKTGAFVAL-DEAYYE 178

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L + +AA   +        +   I LT G+S  +   ++         ++ P   Y    
Sbjct: 56  LGNKLAAHHQV--------EAPSILLTAGSSEGIRAAIEAYAS-LEAQLVIPELTYGDGE 106

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
               + G  +    + +   W  +   ++    A  A   +  ++V + NP NPTG +  
Sbjct: 107 HFAKIAGMKVTKVKMLD--NWAFD---IEGLKAAVAAY--SGPSIVYLVNPNNPTGTITP 159

Query: 289 EENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHS 325
            +    I  +        + + DE Y E  +V + +F S
Sbjct: 160 AD---VIEPWIASKPANTMFIVDEAYAE--FVNDPRFRS 193

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 26/154 (16%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L+ T+A    +           +I +  G+   +   +   +    +  L     + +Y 
Sbjct: 70  LKSTLAQKYKV--------QNENIIIGAGSDQVIEFAIHSKLN-SKNAFLQAGVTFAMYE 120

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
                 G                +             +       L+ +  P NP G+ L
Sbjct: 121 IYAKQCGAKCYKTQSITHNLDEFK----------KLYETHKDEIKLIFLCLPNNPLGECL 170

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
                   +    ++ LV++ D  Y E  +   K
Sbjct: 171 DASEATEFIKGVNEDCLVVI-DAAYNE--FASFK 201

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 26/154 (16%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A    +        +  ++  T G    + ++ ++L+       +   P +  Y 
Sbjct: 72  LRKEVADFYQL--------EEEELIFTAGVDELIELLTRVLLD-TTTNTVMATPTFVQYR 122

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
            +  + G  +    L +     LE               I  +  +V I NP NPTG  +
Sbjct: 123 QNALIEGAEVREIPLLQDGEHDLE----------GMLNAIDEKTTIVWICNPNNPTGNYI 172

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
              + +A +D    + LV+L DE Y E  YV  +
Sbjct: 173 ELADIQAFLDRVPSDVLVVL-DEAYIE--YVTPQ 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 52/426 (12%), Positives = 102/426 (23%), Gaps = 143/426 (33%)

Query: 12  FLNRSHQQN---LLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSL---NPKV 65
           F+    + N   L+S   +  +   + +   I+                 D L   N   
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---------------QRDRLYNDNQVF 126

Query: 66  LKCEYAV-RGEIVSIAQRLQQELQTNPG-------------------------SHSFDEI 99
            K  Y V R +     ++   EL+                                  +I
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 100 LYCNIGN---PQSLGQQPITFFREV----LALCDHPSILD------RSETQGLFSADSIE 146
            + N+ N   P+++ +       ++     +  DH S +       ++E + L  +   E
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 147 RAWQILDQI--PG--RA----------TGAYSHSQGIKGLRDTIAAGIEARDGF-PADPN 191
               +L  +       A          T     +  +     T  +         P +  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
            + L       +    Q L   E           P   + I       +   L     W 
Sbjct: 305 SLLLK-----YLDCRPQDL-PREVLTTN------PRRLSII----AESIRDGLATWDNW- 347

Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
                  K +   K   I   +L V+ P          E ++                 V
Sbjct: 348 -------KHVNCDKLTTIIESSLNVLEP---------AEYRKMFDRL-----------SV 380

Query: 312 YQENVYVPEK-------------------KFHSF---KKVSRSMGYGEKDISLVSFQSVS 349
           +  + ++P                     K H +   +K  +        I L     + 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 350 KGRYFH 355
                H
Sbjct: 441 NEYALH 446

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 30/209 (14%)

Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217
               AY+ S+    L  T+      +         +    G   A +++ QL I+     
Sbjct: 66  MGDEAYAGSENFYHLERTVQELFGFKHI-------VPTHQGRG-AENLLSQLAIKPGQY- 116

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KKQLEAA--KAKGITV 271
           +   +  +         +G   V    DEA   GL  +       K+L+    +     +
Sbjct: 117 VAGNMY-FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175

Query: 272 RALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVYVPEKKFHSFKKV 329
             + +    N   GQ ++  N RA+ +  +  G+ +  D     EN Y  ++        
Sbjct: 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKE-------- 227

Query: 330 SRSMGYGEKDISLVSFQSVSKGRYFHFFS 358
            +  G+  K I+ +  +  S   Y    +
Sbjct: 228 -QEQGFENKSIAEIVHEMFS---YADGCT 252

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 32/153 (20%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR+      G         DP+ I + +G+   ++ +++       + I    P Y  Y 
Sbjct: 70  LREVAGELYGF--------DPSWIIMANGSDEVLNNLIRAFAAEG-EEIGYVHPSYSYYG 120

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPGNPTGQVL 287
               + G  +  + L                   A          V     P  P G   
Sbjct: 121 TLAEVQGARVRTFGLTG-------------DFRIAGFP-ERYEGKVFFLTTPNAPLGPSF 166

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
             E    I +  ++   +L+ DE Y E  +   
Sbjct: 167 PLE---YIDELARRCAGMLVLDETYAE--FAES 194

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVKKQ 260
           A+ ++++ L     + +    P Y  +   I   G  L    + D      +        
Sbjct: 109 AIFVLLEFLKMLNVETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI-DINYDLFLND 167

Query: 261 LEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
           L             V++     NP    + E+    I++    +  V++ D  YQ
Sbjct: 168 LRNIPNGSS-----VILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
           LD+I  +    +        + + +   +          +   +T+GA  A   +M  L 
Sbjct: 47  LDEI--KTPPIH------DFIHNQLPKFLGC--------DVARVTNGAREAKFAVMHSLA 90

Query: 212 RSENDGILCPIPQYPLYSASIA--LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
           + ++  ++  + +   YS+ +A    G  +      +   + +      + +E    K  
Sbjct: 91  K-KDAWVV--MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEE-TKKRG 146

Query: 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
            V   ++  P    G +    + + I   C +  + LL +  Y
Sbjct: 147 EVVLALITYPDGNYGNLP---DVKKIAKVCSEYDVPLLVNGAY 186

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 196 TDGASPAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLE 253
           +   + A+H+  +   +   D  +    P +  + A     G     Y Y    T   L+
Sbjct: 104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK-SLD 162

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
            +     ++ A    I      V++    NPTG     E    IVD    +  + L D  
Sbjct: 163 LNGFLNAIQKAPEGSI-----FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA 217

Query: 312 YQ 313
           YQ
Sbjct: 218 YQ 219

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGW-GLE 253
           T G +  +H ++        D +L     +  Y    +  G TLV Y   DE   +    
Sbjct: 108 TAGGTGGIHHLIHNYTEP-GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEA 166

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKE------GLV 305
                 +L A +        +V+ N    NPTG  + +++  +I++F K         ++
Sbjct: 167 FQNRVNELAAKQT-----NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVI 221

Query: 306 LLADEVYQ 313
           +  D  Y 
Sbjct: 222 IGIDVAYL 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.98
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.98
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.98
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.98
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.98
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.97
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.97
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.97
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.97
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.94
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.96
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.96
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.96
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.95
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.95
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.94
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.94
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.92
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.92
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.91
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.91
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.91
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.91
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.91
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.91
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.91
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.91
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.9
1svv_A	359	Threonine aldolase; structural genomics, structura	99.9
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.89
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.89
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.89
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.89
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.89
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.88
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.88
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.88
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.88
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.88
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.88
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.88
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.88
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.88
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.87
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.87
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.87
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.87
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.87
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.87
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.87
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.87
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.87
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.87
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.87
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.86
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.86
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.86
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.86
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.86
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.86
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.86
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.86
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.86
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.86
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.85
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.85
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.85
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.85
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.85
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.85
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.84
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.84
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.84
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.84
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.84
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.83
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.83
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.83
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.83
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.82
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.82
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.82
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.82
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.82
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.82
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.82
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.82
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.81
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.81
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.81
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.81
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.81
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.81
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.81
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.81
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.81
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.81
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.81
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.8
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.8
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.8
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.8
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.8
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.8
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.8
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.8
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.8
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.8
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.8
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.8
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.8
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.8
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.79
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.79
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.79
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.79
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.79
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.79
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.79
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.78
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.78
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.78
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.78
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.78
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.78
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.78
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.78
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.78
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.78
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.78
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.78
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.77
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.77
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.77
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.76
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.76
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.75
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.75
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.75
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.75
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.75
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.73
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.73
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.72
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.72
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.72
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.71
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.7
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.7
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.69
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.68
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.66
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.64
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.64
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.6
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.6
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.59
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.56
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.31
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.54
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.17
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.07
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	98.9
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.83
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	98.83
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	98.83
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.79
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.66
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.66
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.33
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.03
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.59
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.81
4dqx_A	277	Probable oxidoreductase protein; structural genomi	88.84
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	88.42
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	87.68
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	87.29
2gjx_A	507	Beta-hexosaminidase alpha chain; beta-hexosaminida	87.22
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	87.21
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	87.0
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	86.83
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	86.46
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.46
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	86.23
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	86.18
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	86.02
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	85.68
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	85.6
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	85.41
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	85.39
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.06
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	85.03
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	84.66
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	84.59
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	84.38
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	84.09
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	84.02
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	83.83
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	83.78
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.43
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	83.39
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	83.19
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	83.04
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	82.99
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	82.84
3rih_A	293	Short chain dehydrogenase or reductase; structural	82.8
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	82.78
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	82.5
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	82.31
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	82.3
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	82.19
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	82.13
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	81.96
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	81.95
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	81.28
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	81.24
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.08
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	80.89
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	80.84
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	80.81
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	80.69
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	80.69
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	80.24
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	80.19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	80.18

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=1e-51  Score=414.58  Aligned_cols=310  Identities=77%  Similarity=1.218  Sum_probs=282.6

Q ss_pred             CCCCcccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCc
Q 018147           51 TSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSI  130 (360)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~  130 (360)
                      .+.+.+|+++||+++.++.|++||++..+|+++++++++|++.+||+++|+++||+|..++|+|++|+|+++.++++|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~   97 (500)
T 3tcm_A           18 KMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDL   97 (500)
T ss_dssp             ---CCCCGGGSCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGG
T ss_pred             CccccCCHHHhCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCccc
Confidence            35668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH
Q 018147          131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l  210 (360)
                      ++++.++..+|.++++++.+.+...+......|++..|..++|+++++++.+++|+++++++|++|+|+++++..+++++
T Consensus        98 i~~~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l  177 (500)
T 3tcm_A           98 LQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL  177 (500)
T ss_dssp             GGCTTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH
Confidence            99999877799999999988887754224778999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       211 ~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      +.++||+|+++.|+|+.|...++..|++++.++++++++|.+|+++|++++++...++.++++|+++|||||||.+++.+
T Consensus       178 ~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~  257 (500)
T 3tcm_A          178 IRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEE  257 (500)
T ss_dssp             CCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHH
T ss_pred             cCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHH
Confidence            73399999999999999999999999999999999988899999999999998777777899999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc--ccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY--FHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~--g~~RvGw  360 (360)
                      ++++|+++|+++|+++|+||+|++++|++..++.++.++..+++...+++++|+++||||+|+  +|+|+||
T Consensus       258 ~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~  329 (500)
T 3tcm_A          258 NQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGY  329 (500)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEE
T ss_pred             HHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEE
Confidence            999999999999999999999999999765568888887776642234556899999999994  5999998

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5e-51  Score=409.48  Aligned_cols=301  Identities=45%  Similarity=0.761  Sum_probs=253.4

Q ss_pred             CCcccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccc
Q 018147           53 SPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILD  132 (360)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~  132 (360)
                      .+.+|+++||++|.+++|++||+|..+|+++++++++|.. .||+++|++|||+|+..+|+|.+|+|++++++.+|.+++
T Consensus        20 ~~~~~~~~~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~-~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~   98 (498)
T 3ihj_A           20 FQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIK-KPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLD   98 (498)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHTTCC-CSSSSCBCCC----------CCHHHHHHHHHHHCGGGGG
T ss_pred             cccCCHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHhccCC-CchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccC
Confidence            4579999999999999999999999999999999998887 499999999999999999999999999999999999997


Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhc-CCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~-g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      .    ..+|.++++++.+.+.+........|++..|.+++|+++++++.+++ |+++++++|++|+|+++++..++++++
T Consensus        99 ~----~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~  174 (498)
T 3ihj_A           99 S----PSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV  174 (498)
T ss_dssp             C----SSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             c----ccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc
Confidence            3    35899999999888887542236789999999999999999999988 488999999999999999999999998


Q ss_pred             cCCCC----EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSEND----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      . +||    +|+++.|+|+.|...++..|++++.++++++++|++|+++|++++++...+ .++++|+++|||||||.++
T Consensus       175 ~-~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v~  252 (498)
T 3ihj_A          175 S-GGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQ  252 (498)
T ss_dssp             C-CCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCCC
T ss_pred             C-CCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCcC
Confidence            5 765    999999999999999999999999999998888999999999999875321 2589999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC-CCceEEEEeccCcCcc--ccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGRY--FHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~i~~~S~SK~~~--g~~RvGw  360 (360)
                      +.+++++|+++|+++|++||+||+|++++|++..++.++.++..++...+ +++++|+++||||+|+  +|+|+||
T Consensus       253 s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~  328 (498)
T 3ihj_A          253 SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGY  328 (498)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEE
Confidence            99999999999999999999999999999986546888888766554222 2446899999999995  7999998

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=1.8e-37  Score=300.24  Aligned_cols=242  Identities=21%  Similarity=0.353  Sum_probs=208.3

Q ss_pred             ccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        60 ~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      .+++++..++.+....+..++.++.+.     +    +++|+++.|+|+.                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~i~l~~~~~~~-----------------------------~   44 (385)
T 1b5p_A            3 GLSRRVQAMKPSATVAVNAKALELRRQ-----G----VDLVALTAGEPDF-----------------------------D   44 (385)
T ss_dssp             CCCHHHHHCCCCHHHHHHHHHHHHHHT-----T----CCCEECCCSSCSS-----------------------------C
T ss_pred             hhhhHHhhcCcchHHHHHHHHHHHHhc-----C----CCEEEecCCCCCC-----------------------------C
Confidence            356778788877766677777766543     1    3789999999976                             4


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      .|+.+.+++.+.+...    ...|++..|..++|+++++++.+.+|..+++++|++|+|+++++..++++++ ++||+|+
T Consensus        45 ~~~~v~~a~~~~~~~~----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl  119 (385)
T 1b5p_A           45 TPEHVKEAARRALAQG----KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVI  119 (385)
T ss_dssp             CCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEE
T ss_pred             CCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-CCCCEEE
Confidence            4778888888777652    4579988899999999999999989988999999999999999999999998 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.|...++..|++++.++++++++|.+|+++|++++++      ++++|+++|||||||.+++.+++++|+++|
T Consensus       120 v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~  193 (385)
T 1b5p_A          120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLA  193 (385)
T ss_dssp             EEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999998655789999999998865      689999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++|++||+||+|.++.|++  ++.++..+ .      ++ ++|+++||||.|+ +|+|+||
T Consensus       194 ~~~~~~li~De~~~~~~~~~--~~~~~~~~-~------~~-~~i~~~s~SK~~~~~G~RiG~  245 (385)
T 1b5p_A          194 VEHDFYLVSDEIYEHLLYEG--EHFSPGRV-A------PE-HTLTVNGAAKAFAMTGWRIGY  245 (385)
T ss_dssp             HHTTCEEEEECTTTTCBSSS--CCCCGGGT-C------TT-TEEEEEESTTTTTCGGGCCEE
T ss_pred             HHcCCEEEEEccchhcccCC--CCCCHHHc-C------CC-CEEEEEechhhcCCcccceEE
Confidence            99999999999999998875  24555443 1      12 5899999999998 7999998

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=8.4e-37  Score=298.52  Aligned_cols=226  Identities=12%  Similarity=0.066  Sum_probs=181.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|||++|.|...+.++                        ..++.+.+++. .+.+..  ...+|++..|.++||+++
T Consensus        29 ~~~I~l~~G~~~d~~~~~------------------------~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~ai   81 (405)
T 3k7y_A           29 EEKINLSIGVCCNDDGDL------------------------HIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLT   81 (405)
T ss_dssp             SSCEECSCSSCBCTTSSB------------------------CCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHH
T ss_pred             cCcEEeeeeeeECCCCCC------------------------cccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHH
Confidence            589999999854321111                        23566666655 331222  367899999999999999


Q ss_pred             HHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCC
Q 018147          177 AAGIEARDGFPADPND--IFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE  253 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~--I~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  253 (360)
                      ++|+.++++..+++++  |++|.|+++|+.+++..++. .+ |+|++++|+|+.|...++.+|++++.+|+.++++|++|
T Consensus        82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  160 (405)
T 3k7y_A           82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN  160 (405)
T ss_dssp             HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred             HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence            9999887777777775  59999999999999998872 27 99999999999999999999999999998545568999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCCCCHHHHHH
Q 018147          254 TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSR  331 (360)
Q Consensus       254 ~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s~~~~~~  331 (360)
                      +++|++++++.    ++.+++++++| |||||.+++.+++++|+++|++|+++||+||+|.++.|++. .+..++..+..
T Consensus       161 ~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~  236 (405)
T 3k7y_A          161 YDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE  236 (405)
T ss_dssp             HHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT
T ss_pred             HHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh
Confidence            99999999752    14678888765 99999999999999999999999999999999999988642 12233433322


Q ss_pred             hhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          332 SMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       332 ~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .    .+ ++|+++||||+|+ +|+|+||
T Consensus       237 -~----~~-~~i~~~S~SK~~~l~GlRiG~  260 (405)
T 3k7y_A          237 -K----NI-AFSVCQSFSKNMSLYGERAGA  260 (405)
T ss_dssp             -T----TC-CEEEEEECTTTSCCTTTTEEE
T ss_pred             -c----CC-cEEEEeeCCccCCCccccceE
Confidence             1    12 6899999999998 8999998

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=1.6e-35  Score=286.96  Aligned_cols=246  Identities=20%  Similarity=0.305  Sum_probs=207.1

Q ss_pred             cChhhhcc--ccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCC
Q 018147           61 LNPKVLKC--EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQG  138 (360)
Q Consensus        61 ~~~~~~~~--~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~  138 (360)
                      +++++..+  ..+...++...+.+++++.       ..+++|+++.|+|+.                             
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~~-----------------------------   47 (398)
T 3ele_A            4 VNESMYQLGSVRSAIRELFEYGKKRAAIV-------GKENVYDFSIGNPSI-----------------------------   47 (398)
T ss_dssp             SCHHHHHHHHCCCHHHHHHHHHHHHHHHH-------CGGGCEECCSCCCCS-----------------------------
T ss_pred             hhHHHhccccCchhHHHHHHHHHHHHhhc-------CCCCeEEeecCCCCC-----------------------------
Confidence            45666666  3455556777777776653       125899999999886                             


Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~  217 (360)
                      ..|+.+.+++.+.+.+........|++..|..++|+++++++.+.+|+++++++|++|+|+++++..+++.++. +| |+
T Consensus        48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~-~g~d~  126 (398)
T 3ele_A           48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTS-DAYDE  126 (398)
T ss_dssp             CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-STTCE
T ss_pred             CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcC-CCCCE
Confidence            45788999988888763211146799999999999999999999999999999999999999999999999984 99 99


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.|+|+.|...++..|++++.++++++ +|.+|+++|++++++      ++++|++++||||||.+++.+++++|++
T Consensus       127 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~  199 (398)
T 3ele_A          127 FITIAPYFPEYKVFVNAAGARLVEVPADTE-HFQIDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSD  199 (398)
T ss_dssp             EEEESSCCTHHHHHHHHTTCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEeCCCchhhHHHHHHcCCEEEEEecCCc-CCcCCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999764 689999999998875      7999999999999999999999999999


Q ss_pred             HHHH------cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          298 FCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       298 la~~------~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|++      +|+++|+||+|.++.+++. ........        .+ ++++++||||.|+ +|+|+||
T Consensus       200 ~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--------~~-~~i~~~s~sK~~~~~G~r~G~  259 (398)
T 3ele_A          200 LLEKKSKEIGRPIFIIADEPYREIVYDGI-KVPFVTKY--------YD-NTLVCYSYSKSLSLPGERIGY  259 (398)
T ss_dssp             HHHHHHHHHTSCCEEEEECTTTTCBCTTC-CCCCGGGT--------CS-SEEEEEESTTTSSCTTTCCEE
T ss_pred             HHHhhhhccCCCeEEEEeccccccccCCC-CcCChHhh--------cC-CeEEEEehhhcCCCccceeEE
Confidence            9999      9999999999999998764 23232211        12 5799999999998 8999998

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=1.8e-35  Score=289.49  Aligned_cols=249  Identities=14%  Similarity=0.054  Sum_probs=197.2

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCC---CCcCCCCCChhHHHHHHhhcCCCCccccCccC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIG---NPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG---~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~  137 (360)
                      +.+++..++.+....+..+   +.+.        +.+++|++++|   +|+.                           +
T Consensus        24 ~~~~~~~~~~~~i~~~~~~---~~~~--------~~~~~i~l~~G~y~d~~~---------------------------~   65 (420)
T 4f4e_A           24 LFSAVELAPRDPILGLNEA---FNAD--------TRPTKVNLGVGVYTNEDG---------------------------K   65 (420)
T ss_dssp             TTTTCCCCCCCHHHHHHHH---HHHC--------CCSSCEECCCCSCCCTTS---------------------------C
T ss_pred             HhhcCCcCCCChHHHHHHH---HHhc--------CCCCcEEeeeeeeECCCC---------------------------C
Confidence            4455666666543333333   3322        11489999999   5665                           1


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HHccC
Q 018147          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRS  213 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~I~~t~Ga~~al~~~~~--~l~~~  213 (360)
                      ...++.+.+++.+.+.+.   ....|++..|.+++|+++++++...++..++++  +|++|+|+++|+..+++  .++ +
T Consensus        66 ~~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~-~  141 (420)
T 4f4e_A           66 IPLLRAVRDAEKARVEAG---LPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL-N  141 (420)
T ss_dssp             CCCCHHHHHHHHHHHHTC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-C
T ss_pred             ccCcHHHHHHHHHHhccC---CCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh-C
Confidence            123588999988888762   356899999999999999999977655555788  89999999999999954  556 5


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      +||+|+++.|+|..|...++..|++++.+++.+++++++|++.|++.+++.   .++++++++++||||||.+++.++++
T Consensus       142 ~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~  218 (420)
T 4f4e_A          142 PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWA  218 (420)
T ss_dssp             TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHH
T ss_pred             CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999999999854446799999999998731   12678899999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++|+++|+++|+||+|.++.|+++.+..++..+.. .    .+ ++|+++||||.|+ +|+|+||
T Consensus       219 ~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~----~~-~~i~~~S~SK~~~~~G~RiG~  280 (420)
T 4f4e_A          219 QVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA-A----NL-NVFVSSSFSKSFSLYGERVGA  280 (420)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH-T----TC-CEEEEEECTTTTTCGGGCEEE
T ss_pred             HHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh-c----CC-CEEEEEeCCccCcCcCCCcEE
Confidence            99999999999999999999999975333555555432 2    22 5899999999999 6999998

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.4e-34  Score=279.82  Aligned_cols=234  Identities=19%  Similarity=0.267  Sum_probs=195.0

Q ss_pred             hhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHH
Q 018147           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (360)
Q Consensus        64 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~  143 (360)
                      ++..+..+...++...+.++.+++         +++|+++.|+|..                             ..|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g---------~~~i~l~~g~~~~-----------------------------~~~~~   48 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEAG---------RRIIHMEVGQPGT-----------------------------GAPRG   48 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHTT---------CCCEECCCSSCSS-----------------------------CSCHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhcC---------CCeEEccCCCCCC-----------------------------CCCHH
Confidence            344555666666777777776651         4899999999886                             45888


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCC
Q 018147          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (360)
Q Consensus       144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P  223 (360)
                      +++++.+.+.+.    ...|++..|..++|+++++++.+++|+++++++|++|+|+++++..++++++. +||+|+++.|
T Consensus        49 v~~a~~~~~~~~----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~-~gd~vl~~~p  123 (391)
T 3h14_A           49 AVEALAKSLETD----ALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFD-SGDRVGIGAP  123 (391)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred             HHHHHHHHHhcC----CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcC-CCCEEEEcCC
Confidence            999888877652    46799999999999999999999999999999999999999999999999984 9999999999


Q ss_pred             CchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       224 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      +|..+...++..|++++.++++++++|.+|+++|+++         ++++|++++|+||||.+++.+++++|+++|+++|
T Consensus       124 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~  194 (391)
T 3h14_A          124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQG  194 (391)
T ss_dssp             CCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999998877789999998765         4889999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++|+||+|.++.+++.  +.++...    .   +  ++|+++|+||.|+ +|+|+||
T Consensus       195 ~~li~De~~~~~~~~~~--~~~~~~~----~---~--~~i~~~s~sK~~g~~G~r~G~  241 (391)
T 3h14_A          195 ASFISDEIYHGIEYEAK--AVTALEL----T---D--ECYVINSFSKYFSMTGWRVGW  241 (391)
T ss_dssp             CEEEEECTTTTCBSSSC--CCCGGGT----C---S--SSEEEEESSSTTCCTTSCCEE
T ss_pred             CEEEEECcchhcccCCC--CcChhhc----C---C--CEEEEEechhccCCccceeEE
Confidence            99999999999998764  3343322    1   2  4799999999998 8999998

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-34  Score=279.31  Aligned_cols=245  Identities=22%  Similarity=0.336  Sum_probs=207.6

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..++.+....+..++.++.++     +    +++|+++.|+|..                             ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~i~l~~~~~~~-----------------------------~~   44 (388)
T 1j32_A            3 LAARVESVSPSMTLIIDAKAKAMKAE-----G----IDVCSFSAGEPDF-----------------------------NT   44 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTT-----T----CCCEECCCSSCSS-----------------------------CC
T ss_pred             hhhHhHhCCccHHHHHHHHHHHHHhc-----C----CCEEECCCCCCCC-----------------------------CC
Confidence            45677777777777777777776543     1    4789999999875                             35


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+.+++.+.+...    ...|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++++++ ++||+|++
T Consensus        45 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~  119 (388)
T 1j32_A           45 PKHIVEAAKAALEQG----KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII  119 (388)
T ss_dssp             CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            788888888877652    4579998899999999999999988988889999999999999999999998 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|+.+...++..|++++.++++++++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~  193 (388)
T 1j32_A          120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV  193 (388)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999988655688999999998875      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.+++. ++.++..+..+..    + .++++.|+||.|+ +|+|+||
T Consensus       194 ~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~----~-~~~~~~s~sK~~~~~G~r~G~  248 (388)
T 1j32_A          194 EAGLWVLSDEIYEKILYDDA-QHLSIGAASPEAY----E-RSVVCSGFAKTYAMTGWRVGF  248 (388)
T ss_dssp             HHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHH----H-TEEEEEESTTTTTCTTTCCEE
T ss_pred             HcCCEEEEEccchhcccCCC-CCCCHHHcccccc----C-CEEEEeechhccCCcccceEE
Confidence            99999999999999988764 3555554322111    1 4799999999997 7999998

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=1.4e-34  Score=279.98  Aligned_cols=219  Identities=21%  Similarity=0.321  Sum_probs=189.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|..                             ..|+.+.+++.+.+..     ...|++..|..++|+++
T Consensus        30 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~g~~~lr~~l   75 (396)
T 3jtx_A           30 MEAVPLHIGEPKH-----------------------------PTPKVITDALTASLHE-----LEKYPLTAGLPELRQAC   75 (396)
T ss_dssp             CCCEECSCCSCCS-----------------------------CCCHHHHHHHHHTGGG-----GGSCCCTTCCHHHHHHH
T ss_pred             CCeEEeCCcCCCC-----------------------------CCCHHHHHHHHHHhhh-----ccCCCCCCCcHHHHHHH
Confidence            5899999999886                             4588888888877643     66799999999999999


Q ss_pred             HHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHccCCC-----CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCC
Q 018147          177 AAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSEN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATG  249 (360)
Q Consensus       177 a~~l~~~~g~~-~~~~-~I~~t~Ga~~al~~~~~~l~~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~  249 (360)
                      ++++.+++|+. ++++ +|++|+|+++++..++++++. +|     |+|+++.|+|..|...++..|++++.++++ +++
T Consensus        76 a~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g  153 (396)
T 3jtx_A           76 ANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APS  153 (396)
T ss_dssp             HHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTT
T ss_pred             HHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCC
Confidence            99999999987 8899 999999999999999999985 86     799999999999999999999999999994 456


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       250 ~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                      |.+|+++|++++++      ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++...
T Consensus       154 ~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~  226 (396)
T 3jtx_A          154 FNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQA  226 (396)
T ss_dssp             CCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHH
T ss_pred             CccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhh
Confidence            88999999999987      799999999999999999999999999999999999999999999988773 35555444


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ...+... .+ +++++.||||+|+ +|+|+||
T Consensus       227 ~~~~~~~-~~-~~i~~~s~sK~~~~~G~r~G~  256 (396)
T 3jtx_A          227 AAQLGRS-RQ-KLLMFTSLSKRSNVPGLRSGF  256 (396)
T ss_dssp             HHHTTCC-CT-TEEEEEESTTTSSCGGGCCEE
T ss_pred             hhhcccc-cC-cEEEEeccccccCCcccceEE
Confidence            3333221 22 5799999999875 6999998

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=288.82  Aligned_cols=218  Identities=20%  Similarity=0.349  Sum_probs=189.9

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+++.|.|+.                             ..|+.+.+++.+.+.+.   ....|++..|..+||+++
T Consensus        57 ~~~i~l~~g~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~i  104 (447)
T 3b46_A           57 RELINLGQGFFSY-----------------------------SPPQFAIKEAQKALDIP---MVNQYSPTRGRPSLINSL  104 (447)
T ss_dssp             SCCEECCCCSCSS-----------------------------CCCHHHHHHHHHHTTSG---GGGSCCCTTCCHHHHHHH
T ss_pred             CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCc---CCCCCCCCCCCHHHHHHH
Confidence            4799999999976                             34788888888877642   256899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC--------
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT--------  248 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~--------  248 (360)
                      ++++.+.+|.++++++|++|+|+++|+..++++++ ++||+|+++.|+|+.|...++..|++++.+++++++        
T Consensus       105 a~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  183 (447)
T 3b46_A          105 IKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-NAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR  183 (447)
T ss_dssp             HHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred             HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence            99999988988899999999999999999999998 499999999999999999999999999999987653        


Q ss_pred             --CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCH
Q 018147          249 --GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (360)
Q Consensus       249 --~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~  326 (360)
                        +|.+|+++|++++++      ++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.|++.  +.++
T Consensus       184 ~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~  255 (447)
T 3b46_A          184 GEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI  255 (447)
T ss_dssp             STTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCG
T ss_pred             ccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC--CcCH
Confidence              588999999998865      799999999999999999999999999999999999999999999998762  4555


Q ss_pred             HHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          327 KKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       327 ~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..+..+..    + +++++.|+||.|+ +|+|+||
T Consensus       256 ~~~~~~~~----~-~~i~i~S~sK~~~~~G~riG~  285 (447)
T 3b46_A          256 ATLSPEIG----Q-LTLTVGSAGKSFAATGWRIGW  285 (447)
T ss_dssp             GGSCHHHH----T-TEEEEEEHHHHTTCTTSCCEE
T ss_pred             HHcCCCCC----C-cEEEEecCchhcCCcchhhEE
Confidence            44311111    2 5799999999998 7999998

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=2.2e-34  Score=279.47  Aligned_cols=242  Identities=12%  Similarity=0.083  Sum_probs=192.0

Q ss_pred             chHHHHHHHHHHHHhcCCCCCCcccceeccCCCC-cCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHH
Q 018147           74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQIL  152 (360)
Q Consensus        74 ~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p-~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l  152 (360)
                      ..+...++++++.        +.+++|++++|.| +..+..                         ...+.+.+++.+.+
T Consensus        13 ~~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~~~~~-------------------------~~~~~v~~a~~~~~   59 (401)
T 7aat_A           13 DPILGVTEAFKRD--------TNSKKMNLGVGAYRDDNGKP-------------------------YVLNCVRKAEAMIA   59 (401)
T ss_dssp             CHHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCC-------------------------CCCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHhhC--------CCCCceeeeeeeEECCCCCE-------------------------echHHHHHHHHHhc
Confidence            3455566665553        2246999999998 552211                         12456667666665


Q ss_pred             HcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHc--cCCCCEEEEcCCCchHH
Q 018147          153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLI--RSENDGILCPIPQYPLY  228 (360)
Q Consensus       153 ~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~~l~--~~~gd~Vlv~~P~y~~~  228 (360)
                      ...   ...+|.+..|.+++|+++++++.+++|+.+++++|++  |+|+++++..++..+.  .++||+|+++.|+|..|
T Consensus        60 ~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~  136 (401)
T 7aat_A           60 AKK---MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH  136 (401)
T ss_dssp             HTT---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH
T ss_pred             ccc---cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhH
Confidence            532   3678999999999999999999988888888999977  9999999998887664  14899999999999999


Q ss_pred             HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ...++..|++++.+++++++++++|++.+++.+++.   .++++++++++||||||.+++.+++++|+++|+++|+++|+
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  213 (401)
T 7aat_A          137 TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF  213 (401)
T ss_dssp             HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence            999999999999999876556899999988888641   23678999999999999999999999999999999999999


Q ss_pred             ccCCCCCccCCCC-CCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          309 DEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       309 DeaY~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ||+|+++.+++.. +..++..... .    .+ ++|+++||||.|+ +|+|+||
T Consensus       214 Deay~~~~~~~~~~~~~~~~~~~~-~----~~-~~i~~~S~sK~~~~~G~RiG~  261 (401)
T 7aat_A          214 DMAYQGFASGDINRDAWALRHFIE-Q----GI-DVVLSQSYAKNMGLYGERAGA  261 (401)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHH-T----TC-CCEEEEECTTTSCCGGGCEEE
T ss_pred             ccccccccCCCccccHHHHHHHHh-c----CC-cEEEEecCCcccccccCceEE
Confidence            9999999886521 1233333322 1    12 5899999999998 7999998

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.2e-34  Score=282.83  Aligned_cols=241  Identities=22%  Similarity=0.330  Sum_probs=202.4

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..++.+....+...+    +.          .++|+++.|+|++                             ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~----~~----------~~~i~l~~g~~~~-----------------------------~~   42 (422)
T 3fvs_A            6 QARRLDGIDYNPWVEFVKLA----SE----------HDVVNLGQGFPDF-----------------------------PP   42 (422)
T ss_dssp             SCGGGTTCCCCHHHHHHHHH----HT----------SCCEECCCSSCSS-----------------------------CC
T ss_pred             HHHHhhccCccHHHHHHHHh----hc----------CCceEeCCCCCCC-----------------------------CC
Confidence            45666666666444433322    11          3799999999987                             45


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      |+.+++++.+.+....  ....|++..|..++|+++++++.+.+|+.+++ ++|++|+|+++++..+++.++. +||+|+
T Consensus        43 ~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~-~gd~vl  119 (422)
T 3fvs_A           43 PDFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVI  119 (422)
T ss_dssp             CHHHHHHHHHHHHSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC-TTCEEE
T ss_pred             CHHHHHHHHHHHhCCC--ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcC-CCCEEE
Confidence            8889999988887632  24689999999999999999999999998988 7999999999999999999984 999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCC----------CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDE----------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      ++.|+|..|...++..|.+++.++++.          +.+|.+|+++|++++++      ++++|++++||||||.+++.
T Consensus       120 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~  193 (422)
T 3fvs_A          120 IIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSR  193 (422)
T ss_dssp             EEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCH
T ss_pred             EcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCH
Confidence            999999999999999999999999876          23678999999998875      79999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++++|+++|+++|+++|+||+|.++.|++. .+.++..+...     .+ ++|++.|+||.|+ +|+|+||
T Consensus       194 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~-----~~-~~i~~~S~sK~~g~~G~r~G~  258 (422)
T 3fvs_A          194 EELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLPGM-----WE-RTLTIGSAGKTFSATGWKVGW  258 (422)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTTT-----GG-GEEEEEEHHHHHTCGGGCCEE
T ss_pred             HHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCChhhcccc-----cC-cEEEEecchhccCCccceEEE
Confidence            9999999999999999999999999999874 35555544210     12 5899999999998 8999998

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.7e-34  Score=280.13  Aligned_cols=245  Identities=22%  Similarity=0.287  Sum_probs=189.2

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++.+++.+....+...+.++...     +    .++|+++.|+|..                             ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~idl~~g~~~~-----------------------------~~   51 (412)
T 2x5d_A           10 RFARIDRLPPYVFNITAELKMAARRR-----G----EDIIDLSMGNPDG-----------------------------PT   51 (412)
T ss_dssp             -----------CHHHHHHHHHHHHHT-----T----CCCEECSSCCCCS-----------------------------CC
T ss_pred             hhHHHhhcCchHHHHHHHHHHHHhhc-----C----CCEEecCCCCCCC-----------------------------CC
Confidence            44556666666555555555554433     1    4799999999875                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      ++.+.+++.+.+...   ....|++..|..++|+++|+++.+++|.++++ ++|++|+|+++++..+++.++ ++||+|+
T Consensus        52 ~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-~~gd~Vl  127 (412)
T 2x5d_A           52 PPHIVEKLCTVAQRE---DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-DHGDTIL  127 (412)
T ss_dssp             CHHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC-CCCCEEE
Confidence            777888877766542   24579888899999999999999988988888 799999999999999999998 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.+...++..|++++.++++++++|.+|+++|++++++      ++++|++++||||||.+++.+++++|+++|
T Consensus       128 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~  201 (412)
T 2x5d_A          128 VPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALA  201 (412)
T ss_dssp             EEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHH
Confidence            99999999999999999999999998765677899999988764      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++|+++|+||+|.++.+++. .+.++..+.. .    .+ +++++.|+||.|+ +|+|+||
T Consensus       202 ~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~-~----~~-~~i~~~s~sK~~~~~G~r~G~  256 (412)
T 2x5d_A          202 KQYDVMVVHDLAYADIVYDGW-KAPSIMQVPG-A----KD-IAVEFFTLSKSYNMAGWRIGF  256 (412)
T ss_dssp             HHHTCEEEEECTTTTCBCTTC-CCCCGGGSTT-G----GG-TEEEEEECC-CCSCTTSCCEE
T ss_pred             HHcCCEEEEeccccccccCCC-CCCChhhccC-c----cC-cEEEEecCccccCCcccceEE
Confidence            999999999999999988654 3455544311 0    12 5799999999998 8999998

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.3e-33  Score=273.41  Aligned_cols=243  Identities=25%  Similarity=0.362  Sum_probs=205.1

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++...+.+....+..++.+..++     +    +++|+++.|+|..                             +.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~i~l~~~~~~~-----------------------------~~   55 (389)
T 1o4s_A           14 VSRRISEIPISKTMELDAKAKALIKK-----G----EDVINLTAGEPDF-----------------------------PT   55 (389)
T ss_dssp             CCHHHHHSCCCSSHHHHHHHHHHHHT-----T----CCCEECCCSSCSS-----------------------------CC
T ss_pred             HHHHHhhcCccHHHHHHHHHHHHHhc-----C----CCEEEccCCCCCC-----------------------------CC
Confidence            45666677777666677777666543     1    4789999999865                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+.+++.+.+...    ...|++..|..++|+++++++.+++|.++++++|++|+|+++++..++.+++ ++||+|++
T Consensus        56 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-~~gd~Vl~  130 (389)
T 1o4s_A           56 PEPVVEEAVRFLQKG----EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV  130 (389)
T ss_dssp             CHHHHHHHHHHHTTC----CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-CCCCEEEE
Confidence            788888888877652    3478888899999999999999888988889999999999999999999998 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|+.+...++..|++++.++++++++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~  204 (389)
T 1o4s_A          131 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK  204 (389)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999997655688999999998865      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.+++.  +.++..+. ..    .+ +++++.||||.|+ +|+|+||
T Consensus       205 ~~~~~li~Dea~~~~~~~g~--~~~~~~~~-~~----~~-~~i~~~s~sK~~~~~G~r~G~  257 (389)
T 1o4s_A          205 KRNFYIISDEVYDSLVYTDE--FTSILDVS-EG----FD-RIVYINGFSKSHSMTGWRVGY  257 (389)
T ss_dssp             HHTCEEEEECTTTTSBCSSC--CCCHHHHC-SS----ST-TEEEEEESTTTTTCGGGCCEE
T ss_pred             HcCCEEEEEccccccccCCC--CCCHhhcC-CC----CC-cEEEEeechhhcCCcccceEE
Confidence            99999999999999888652  45655441 11    12 4799999999997 7999998

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=8.9e-34  Score=275.96  Aligned_cols=243  Identities=24%  Similarity=0.453  Sum_probs=200.3

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      .+.++.++.++..+.+. .+.++.++     +    +++|+++.|+|...+                          ...
T Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----g----~~~i~l~~~~~~~~~--------------------------~~~   55 (406)
T 1xi9_A           12 ASKRALSVEYAIRDVVL-PARELEKK-----G----IKVIRLNIGDPVKFD--------------------------FQP   55 (406)
T ss_dssp             CCHHHHTCCC--------CHHHHHHT-----T----CCCEECCCCCGGGTT--------------------------CCC
T ss_pred             HHHHHhcCChhHHHHHH-HHHHHHHc-----C----CCEEEecCCCCCcCC--------------------------CCC
Confidence            45777788888777777 77776654     1    478999999983100                          034


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+++++.+.+...    ...|++..|..++|+++++++.+.+|+++++++|++|+|+++|+..++++++ ++||+|++
T Consensus        56 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~Vl~  130 (406)
T 1xi9_A           56 PEHMKEAYCKAIKEG----HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILV  130 (406)
T ss_dssp             CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhcC----CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-CCCCEEEE
Confidence            788888888887652    3479888899999999999999999988999999999999999999999998 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|+.+...++..|++++.++++++++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~  204 (406)
T 1xi9_A          131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAG  204 (406)
T ss_dssp             EESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999999987645678999999998875      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCce-EEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS-LVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.+++  ++.++..+ .      ++ + +|++.||||.++ +|+|+||
T Consensus       205 ~~~~~li~De~~~~~~~~~--~~~~~~~~-~------~~-~~~i~~~s~sK~~~~~G~r~G~  256 (406)
T 1xi9_A          205 EYEIPVISDEIYDLMTYEG--EHISPGSL-T------KD-VPVIVMNGLSKVYFATGWRLGY  256 (406)
T ss_dssp             HHTCCEEEECTTTTCBSSS--CCCCHHHH-C------SS-SCEEEEEESTTTTCCGGGCCEE
T ss_pred             HcCCEEEEEcCccccccCC--CCCCHHHc-C------CC-ceEEEEeccccccCCCccEEEE
Confidence            9999999999999998843  24555544 1      23 5 799999999997 7999998

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=1.3e-33  Score=272.79  Aligned_cols=216  Identities=27%  Similarity=0.441  Sum_probs=187.7

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|+|..                             ..|+.+.+++.+.+...    ...|++..|..++|++++
T Consensus        27 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la   73 (389)
T 1gd9_A           27 DVISLGIGEPDF-----------------------------DTPQHIKEYAKEALDKG----LTHYGPNIGLLELREAIA   73 (389)
T ss_dssp             SCEECCCCSCSS-----------------------------CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHH
T ss_pred             CeEecCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC----CCCCCCCCCcHHHHHHHH
Confidence            789999998875                             34788888888888652    456988889999999999


Q ss_pred             HHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          178 AGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~-I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      +++.+.+|+.+++++ |++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++++|.+|+++
T Consensus        74 ~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  152 (389)
T 1gd9_A           74 EKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDE  152 (389)
T ss_dssp             HHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHH
T ss_pred             HHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHH
Confidence            999998898888999 9999999999999999998 49999999999999999999999999999999865568899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ++.++..+. +.   
T Consensus       153 l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~---  221 (389)
T 1gd9_A          153 LKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLD-GM---  221 (389)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGST-TC---
T ss_pred             HHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CCCCHhhcc-CC---
Confidence            9998865      689999999999999999999999999999999999999999999988753 244544331 10   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ +++++.|+||.|+ +|+|+||
T Consensus       222 -~~-~~i~~~s~sK~~~~~G~r~G~  244 (389)
T 1gd9_A          222 -FE-RTITVNGFSKTFAMTGWRLGF  244 (389)
T ss_dssp             -GG-GEEEEEESTTTTTCGGGCCEE
T ss_pred             -CC-CEEEEecChhhcCCcccceEE
Confidence             12 5799999999997 7999998

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=1.1e-33  Score=277.80  Aligned_cols=221  Identities=23%  Similarity=0.420  Sum_probs=191.6

Q ss_pred             cccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           96 FDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        96 ~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      .+++|+|++|+|+..+.                         ...++.+.+++.+.+...   ....|.+..|..++|++
T Consensus        53 ~~~~i~l~~g~~~~~g~-------------------------~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~  104 (427)
T 3dyd_A           53 NKTMISLSIGDPTVFGN-------------------------LPTDPEVTQAMKDALDSG---KYNGYAPSIGFLSSREE  104 (427)
T ss_dssp             TSCCEECCCSCTTTTSS-------------------------SCCCHHHHHHHHHHHHHC---CSSSCCCTTCCHHHHHH
T ss_pred             CCCEEeCCCcCCCccCC-------------------------CCCCHHHHHHHHHHHhcC---cCCCCCCCCCcHHHHHH
Confidence            35789999999874221                         145888999988888763   25689999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      +++++.+. |.++++++|++|+|+++|+..++..++. +||+|+++.|+|..|...++..|++++.++++++++|.+|++
T Consensus       105 la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  182 (427)
T 3dyd_A          105 IASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLAN-PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLK  182 (427)
T ss_dssp             HHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHH
T ss_pred             HHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcC-CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHH
Confidence            99999766 7778899999999999999999999984 999999999999999999999999999999987677899999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. .+.++..+.     
T Consensus       183 ~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~-~~~~~~~~~-----  250 (427)
T 3dyd_A          183 QLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC-KYEPLATLS-----  250 (427)
T ss_dssp             HHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC-CCCCGGGGC-----
T ss_pred             HHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC-cCccHHHhC-----
Confidence            99998865      689999999999999999999999999999999999999999999998774 355554432     


Q ss_pred             CCCCceEEEEeccCcCc-cccccccC
Q 018147          336 GEKDISLVSFQSVSKGR-YFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~-~g~~RvGw  360 (360)
                        .+..+|+++||||.| .+|+|+||
T Consensus       251 --~~~~vi~~~S~sK~~~~~G~riG~  274 (427)
T 3dyd_A          251 --TDVPILSCGGLAKRWLVPGWRLGW  274 (427)
T ss_dssp             --SSCCEEEEEESTTTSSCGGGCCEE
T ss_pred             --CCCcEEEEeeccccCCCcCcceEE
Confidence              223589999999997 46999998

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=1.2e-33  Score=273.36  Aligned_cols=208  Identities=17%  Similarity=0.084  Sum_probs=174.4

Q ss_pred             CCHHHHHHHHH-HHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HHccCC
Q 018147          140 FSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRSE  214 (360)
Q Consensus       140 ~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~I~~t~Ga~~al~~~~~--~l~~~~  214 (360)
                      .++.+++++.+ .+...   ....|++..|..++|+++++++.+.++..++++  +|++|+|+++++..+++  .++ ++
T Consensus        45 ~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~  120 (397)
T 3fsl_A           45 QLQAVAEAEARLNAQPH---GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FP  120 (397)
T ss_dssp             CCHHHHHHHHHHHHSCC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CT
T ss_pred             CcHHHHHHHHhhccCcc---ccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CC
Confidence            35889999888 77643   256899999999999999999977666555788  99999999999999954  455 49


Q ss_pred             CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHH
Q 018147          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      ||+|+++.|+|..|...++..|++++.+++..++++++|+++|++++++.   .++++++++++||||||.+++.+++++
T Consensus       121 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~  197 (397)
T 3fsl_A          121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDA  197 (397)
T ss_dssp             TCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHH
T ss_pred             CCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHH
Confidence            99999999999999999999999999999854456799999999998731   126788888999999999999999999


Q ss_pred             HHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++|+++|+++|+||+|.++.++...+..++..+.. .    .+ ++|+++||||.|+ +|+|+||
T Consensus       198 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~----~~-~~i~~~S~SK~~~~~G~riG~  258 (397)
T 3fsl_A          198 VIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS-A----GL-PALVSNSFSKIFSLYGERVGG  258 (397)
T ss_dssp             HHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH-T----TC-CEEEEEECTTTTTCGGGCCEE
T ss_pred             HHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh-c----CC-CEEEEecccccccCcCCCeeE
Confidence            9999999999999999999999874323455554432 2    22 5899999999998 7999998

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=2.3e-33  Score=277.56  Aligned_cols=223  Identities=18%  Similarity=0.330  Sum_probs=184.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.|+...                           ..++.+.+++.+.+.+... ...+|++..|..+||+++
T Consensus        76 ~~~i~l~~g~p~~~~---------------------------~p~~~v~~a~~~~l~~~~~-~~~~Y~~~~g~~~lr~~i  127 (448)
T 3aow_A           76 SDIISLAGGLPNPKT---------------------------FPKEIIRDILVEIMEKYAD-KALQYGTTKGFTPLRETL  127 (448)
T ss_dssp             SSSEECCCCCCCGGG---------------------------SCHHHHHHHHHHHHHHSHH-HHHSCCCTTCCHHHHHHH
T ss_pred             CCcEeCCCCCCCchh---------------------------CCHHHHHHHHHHHHHhhhH-HHhCCCCCCCcHHHHHHH
Confidence            378999999987511                           1244566677777765311 145799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+.+|.+ ++++|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++   ++|+++
T Consensus       128 a~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~  202 (448)
T 3aow_A          128 MKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEI  202 (448)
T ss_dssp             HHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHH
T ss_pred             HHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHH
Confidence            99998888877 88999999999999999999998 49999999999999999999999999999999764   689999


Q ss_pred             HHHHHHHHHhcCCCccEEE-EecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          257 VKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~ii-l~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      |+++++....++.++++|+ +++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++. .+.++..+..    
T Consensus       203 L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~-~~~~~~~~~~----  277 (448)
T 3aow_A          203 LEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIKALDN----  277 (448)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC-CCCCTGGGCT----
T ss_pred             HHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHhcCC----
Confidence            9999873211223688875 569999999999999999999999999999999999999999764 3555554411    


Q ss_pred             CCCCceEEEEeccCcCccccccccC
Q 018147          336 GEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        .+ ++|++.||||.|++|+|+||
T Consensus       278 --~~-~vi~~~S~SK~~~~GlriG~  299 (448)
T 3aow_A          278 --EG-RVIYLGTFSKILAPGFRIGW  299 (448)
T ss_dssp             --TS-CEEEEEESTTTTCGGGCCEE
T ss_pred             --CC-CEEEEccchhhccccccEEE
Confidence              12 68999999999999999998

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=2.6e-33  Score=274.59  Aligned_cols=250  Identities=18%  Similarity=0.108  Sum_probs=187.9

Q ss_pred             hhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCH
Q 018147           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (360)
Q Consensus        63 ~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~  142 (360)
                      ++..+++.++..+|...+++++++        + .++|||++|.+....++|.                        ..+
T Consensus        19 ~~~~~v~~~p~d~i~~l~~~~~~d--------~-~~kinLgvG~y~d~~g~~~------------------------vl~   65 (420)
T 4h51_A           19 ERWQKIQAQAPDVIFDLAKRAAAA--------K-GPKANLVIGAYRDEQGRPY------------------------PLR   65 (420)
T ss_dssp             HHHHTCCCCCCCHHHHHHHHHHHC--------C-SSCEECCSCCCBCTTSCBC------------------------CCH
T ss_pred             HHHhCCCCCCCChHHHHHHHHhcC--------C-CCCEEeecCcccCCCCCCC------------------------CCH
Confidence            455666777777888888887765        2 2489999997765444443                        345


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHcc---CCCCE
Q 018147          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR---SENDG  217 (360)
Q Consensus       143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l~~---~~gd~  217 (360)
                      .|.++....++..   ....|.|..|+++||+++++++...   ....+.+  +.|.|++.|+..++..+..   +|||+
T Consensus        66 ~Vk~A~~~~~~~~---~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~  139 (420)
T 4h51_A           66 VVRKAEQLLLDMN---LDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTP  139 (420)
T ss_dssp             HHHHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSC
T ss_pred             HHHHHHHHHhcCC---CCCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCCE
Confidence            5666655555442   2557999999999999999998432   3334443  5588999988877766542   59999


Q ss_pred             EEEcCCCchHHHHHHHHcCCe-EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                      |++++|+|++|..+++..|++ +..++..+++++.+|.+.+.+.++..   .++++++++++||||||.+++.++|++|+
T Consensus       140 V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~  216 (420)
T 4h51_A          140 IYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIA  216 (420)
T ss_dssp             EEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999997 44566655667889999999888653   23566777789999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCC-CCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++++++|+||+|++|.|++... ...+... .+.     +.++|+++||||.|+ .|+||||
T Consensus       217 ~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~-~~~-----~~~~i~~~s~SK~~~~~G~RvG~  276 (420)
T 4h51_A          217 SLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLF-ARR-----GIEVLLAQSFSKNMGLYSERAGT  276 (420)
T ss_dssp             HHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH-HHT-----TCCCEEEEECTTTSCCGGGCEEE
T ss_pred             HHHHhcCceEeeehhhhhhccCCcccchHHHHhH-Hhh-----CceEEEEeccccccccccCceEE
Confidence            99999999999999999999876311 1112222 221     226899999999987 5999998

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=7.9e-33  Score=267.15  Aligned_cols=215  Identities=22%  Similarity=0.329  Sum_probs=187.6

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|.|+.                             ..|+.+.+++.+.+..    ....|++..|..++|++++
T Consensus        31 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la   77 (386)
T 1u08_A           31 QAINLSQGFPDF-----------------------------DGPRYLQERLAHHVAQ----GANQYAPMTGVQALREAIA   77 (386)
T ss_dssp             TCEECCCSSCSS-----------------------------CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHH
T ss_pred             CeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHh----hccCCCCCCCCHHHHHHHH
Confidence            689999999875                             3478888888888765    2457988889999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      +++.+.+|.+++++ +|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++ +|.+|+++
T Consensus        78 ~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~  155 (386)
T 1u08_A           78 QKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQE  155 (386)
T ss_dssp             HHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHH
T ss_pred             HHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHH
Confidence            99999889888999 99999999999999999998 49999999999999999999999999999998764 57899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++. .+.++..+....   
T Consensus       156 l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~---  225 (386)
T 1u08_A          156 FAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHPQLR---  225 (386)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS-CCCCGGGSHHHH---
T ss_pred             HHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC-CCcChhcccCcc---
Confidence            9998864      789999999999999999999999999999999999999999999998764 344554432111   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        + +++++.|+||.|+ +|+|+||
T Consensus       226 --~-~~i~~~s~sK~~~~~G~r~G~  247 (386)
T 1u08_A          226 --E-RAVAVSSFGKTYHMTGWKVGY  247 (386)
T ss_dssp             --T-TEEEEEEHHHHTTCGGGCCEE
T ss_pred             --C-cEEEEecchhhcCCcccceEE
Confidence              2 4799999999998 7999998

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=2.4e-33  Score=273.77  Aligned_cols=248  Identities=17%  Similarity=0.172  Sum_probs=188.4

Q ss_pred             cccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHH
Q 018147           68 CEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER  147 (360)
Q Consensus        68 ~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~  147 (360)
                      .+..++. +..++.+.+++.       +.+++|++++|+|.....                        +...++.+.++
T Consensus        17 ~~~~~~~-~~~~~~~~~~~~-------g~~~~i~l~~g~~~~~~~------------------------~~~~~~~v~~a   64 (418)
T 3rq1_A           17 LKDVIFV-TAGQAQADAKEN-------GRENVVNGTLGAIHDEEG------------------------NLVFLKTVKEE   64 (418)
T ss_dssp             CCCHHHH-HHHHHHHHHHHH-------CGGGCEECCSSCCBCTTS------------------------CBCCCHHHHHH
T ss_pred             CCchHHH-HHHHHHhhhhhh-------cCCCeEECCCCcccCCCC------------------------CccccHHHHHH
Confidence            3334333 455555555441       125899999999843211                        11456667666


Q ss_pred             HHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH
Q 018147          148 AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL  227 (360)
Q Consensus       148 ~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~  227 (360)
                      +.+....    ....|++..|.+++|+++++++.+.++.. .+++|++|+|+++++..+++.++ ++||+|+++.|+|+.
T Consensus        65 ~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~  138 (418)
T 3rq1_A           65 YLSLSDS----EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGA  138 (418)
T ss_dssp             HHTCCHH----HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTH
T ss_pred             HHHhccc----ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchh
Confidence            5443322    24579999999999999999998776532 23399999999999999999998 499999999999999


Q ss_pred             HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCcc-EEEEecC-CCCcccCCCHHHHHHHHHHHH-----
Q 018147          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVINP-GNPTGQVLAEENQRAIVDFCK-----  300 (360)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k-~iil~~P-~NPTG~~~~~~~l~~i~~la~-----  300 (360)
                      |...++..|++++.+++++++ |++|+++|++++++...+  +++ ++++++| |||||.+++.+++++|+++|+     
T Consensus       139 ~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~  215 (418)
T 3rq1_A          139 YRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAI  215 (418)
T ss_dssp             HHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhc
Confidence            999999999999999987554 799999999999753211  355 7888899 999999999999999999999     


Q ss_pred             -HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 -KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 -~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ++|+++|+||+|.++.+++. ...++.....++.   +++.+|+++||||+|+ +|+|+||
T Consensus       216 ~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~  273 (418)
T 3rq1_A          216 GRNNVIIGIDVAYLDYSGEKD-EVRAFFNKFSHLP---KEILTCVCYSLSKGFTMYGQRVGA  273 (418)
T ss_dssp             SSCEEEEEEECTTGGGSSCHH-HHHGGGGGGTTCC---TTEEEEEEEESTTTTTCCSSCCEE
T ss_pred             cCCCeEEEEecccccccCChH-HHHHHHHHHHhcC---CCceEEEEEeCCCCCcCcCCcceE
Confidence             89999999999999887653 1223333222221   3433689999999997 7999998

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.3e-33  Score=269.98  Aligned_cols=215  Identities=20%  Similarity=0.220  Sum_probs=184.7

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+++.|+|..                             +.|+.+.+++.+.+.+.   ....|++..|..++|+++
T Consensus        25 ~~~idl~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~l~~~i   72 (376)
T 2dou_A           25 VGLIDLSIGSTDL-----------------------------PPPEAPLKALAEALNDP---TTYGYCLKSCTLPFLEEA   72 (376)
T ss_dssp             CCCEECSSCCCCC-----------------------------CCCHHHHHHHHHHTTCG---GGSSCCCHHHHHHHHHHH
T ss_pred             CCEEeccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CcCCCCCCCCCHHHHHHH
Confidence            4799999999865                             34788888888777542   256788877899999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+++.+++|.+++++ +|++|+|+++++..++++++ ++||+|+++.|+|+.|...++..|++++.+++  +++|.+|++
T Consensus        73 a~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~  149 (376)
T 2dou_A           73 ARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-EPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLK  149 (376)
T ss_dssp             HHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGG
T ss_pred             HHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-CCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHH
Confidence            999999889888887 99999999999999999998 49999999999999999999999999999998  345789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  +.++......   
T Consensus       150 ~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~---  218 (376)
T 2dou_A          150 AVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE--APSPLALPGA---  218 (376)
T ss_dssp             GSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC--CCCGGGSTTG---
T ss_pred             HHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCChhhcCCC---
Confidence            99999976      689999999999999999999999999999999999999999999888753  4444333210   


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ +++++.||||.|+ +|+|+||
T Consensus       219 --~~-~~i~~~s~sK~~~~~G~r~G~  241 (376)
T 2dou_A          219 --KE-RVVELFSLSKSYNLAGFRLGF  241 (376)
T ss_dssp             --GG-TEEEEEEHHHHHTCGGGCCEE
T ss_pred             --CC-cEEEEecchhhcCChhheeEE
Confidence              12 4799999999997 8999998

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=2.2e-33  Score=269.68  Aligned_cols=216  Identities=19%  Similarity=0.200  Sum_probs=183.8

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|+|..                             ..|+.+++++.+.+.     ....|++..|..++|++++
T Consensus        24 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~-----~~~~y~~~~g~~~lr~~la   69 (376)
T 3ezs_A           24 RGLDLGIGEPQF-----------------------------ETPKFIQDALKNHTH-----SLNIYPKSAFEESLRAAQR   69 (376)
T ss_dssp             CCCBCSSCCCCS-----------------------------CCCHHHHHHHHTTGG-----GGGSCCCTTCCHHHHHHHH
T ss_pred             CEEEeCCCCCCC-----------------------------CCCHHHHHHHHHhhh-----hcCCCCCCCCCHHHHHHHH
Confidence            688888888776                             457888888876662     2668999999999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC--CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~--gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      +++.+++|.++++++|++|+|+++++..+++.++. +  ||+|+++.|+|..|...++..|++++.+++++++++.+   
T Consensus        70 ~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~-~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---  145 (376)
T 3ezs_A           70 GFFKRRFKIELKENELISTLGSREVLFNFPSFVLF-DYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP---  145 (376)
T ss_dssp             HHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTT-TCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC---
T ss_pred             HHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcC-CCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch---
Confidence            99999999888999999999999999999999984 8  99999999999999999999999999999987654544   


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++++++.+      ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  +.++......+..
T Consensus       146 ~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~  217 (376)
T 3ezs_A          146 SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP--PPSLLEACMLAGN  217 (376)
T ss_dssp             CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC--CCCHHHHHHHTTC
T ss_pred             hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCHHHccccccc
Confidence            66677766      689999999999999999999999999999999999999999999988763  5666655332210


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ...+ +++++.||||.|+ +|+|+||
T Consensus       218 ~~~~-~~i~~~s~sK~~g~~G~r~G~  242 (376)
T 3ezs_A          218 EAFK-NVLVIHSLSKRSSAPGLRSGF  242 (376)
T ss_dssp             TTCT-TEEEEEESTTTTTCGGGCCEE
T ss_pred             cccC-cEEEEecchhccCCccceeEE
Confidence            0123 5799999999995 8999998

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=8e-33  Score=272.67  Aligned_cols=247  Identities=18%  Similarity=0.250  Sum_probs=202.2

Q ss_pred             ccccccChhhhccccc-hhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccC
Q 018147           56 ITVDSLNPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRS  134 (360)
Q Consensus        56 ~~~~~~~~~~~~~~~~-~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~  134 (360)
                      .+...+|+++.+++.. .+..+..+......+   .    +.+++|+|++|+|+.                         
T Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----~~~~~i~l~~g~~~~-------------------------   81 (449)
T 3qgu_A           34 TIDVQRNENFGKLRAGYLFPEIARRRKAHQEK---N----PDAKIISLGIGDTTE-------------------------   81 (449)
T ss_dssp             CCCCCCCHHHHHCCSCCHHHHHHHHHHHHHHH---C----TTCCCEECSSCCCCC-------------------------
T ss_pred             ccchhhhHHHHhCCCcchHHHHHHHHHHHHhh---C----CCCCEEEeeCCCCCC-------------------------
Confidence            3455778888887763 455666666655544   1    225899999999887                         


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          135 ETQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       135 ~~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                          ..|+.+++++.+.+.+... .....|++..|..+||+++++++.  +|+++++++|++|+|+++++..+ ..++ +
T Consensus        82 ----~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~-~  153 (449)
T 3qgu_A           82 ----PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMF-G  153 (449)
T ss_dssp             ----CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-C
T ss_pred             ----CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHh-C
Confidence                4688999999888875321 136689998999999999999997  78888999999999999999998 7777 4


Q ss_pred             CCCEEEEcCCCchHHHHHHHHcCCe----------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          214 ENDGILCPIPQYPLYSASIALHGGT----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      +||+|+++.|+|+.|...++..|++          ++.+++++++++..|++++           .++++|++++|||||
T Consensus       154 ~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPt  222 (449)
T 3qgu_A          154 SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPT  222 (449)
T ss_dssp             SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTT
T ss_pred             CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCC
Confidence            9999999999999999999999999          9999998776677775432           278999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+.. .    .+ ++|++.||||+|+ +|+|+||
T Consensus       223 G~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~-~----~~-~~i~~~s~sK~~g~~G~r~G~  293 (449)
T 3qgu_A          223 GAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIPG-A----DE-VAIETCSFSKYAGFTGVRLGW  293 (449)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT-SCSSGGGSTT-G----GG-TEEEEEECSGGGTCTTCCCEE
T ss_pred             CCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC-CCCCHhhccC-C----CC-cEEEEecchhhcCCccceeEE
Confidence            9999999999999999999999999999999998764 3445544311 1    22 5799999999998 8999998

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=2e-33  Score=273.04  Aligned_cols=205  Identities=19%  Similarity=0.299  Sum_probs=179.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      ..|+.+++++.+.+.+.   ....|++..|..++|+++++++.+.+|+.+++ ++|++|+|+++++..+++.++. +||+
T Consensus        36 ~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~-~gd~  111 (410)
T 3e2y_A           36 SPPSYVKEELSKAAFID---NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD-PGDE  111 (410)
T ss_dssp             CCCHHHHHHHHHHHTCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC-TTCE
T ss_pred             CCCHHHHHHHHHHHhCc---cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC-CCCE
Confidence            56888999988888653   25689998899999999999999999998988 8999999999999999999984 9999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCC---------CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDE---------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      |+++.|+|..|...++..|.+++.++++.         +.+|.+|+++|++++++      ++++|++++|+||||.+++
T Consensus       112 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~  185 (410)
T 3e2y_A          112 VIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYT  185 (410)
T ss_dssp             EEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCC
T ss_pred             EEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcC
Confidence            99999999999999999999999998863         24577999999998865      7999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+++++|+++|+++|+++|+||+|.++.|++. .+.++..+..     ..+ ++|++.||||.|+ +|+|+||
T Consensus       186 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-----~~~-~~i~~~S~sK~~g~~G~r~G~  251 (410)
T 3e2y_A          186 RQELQVIADLCVKHDTLCISDEVYEWLVYTGH-THVKIATLPG-----MWE-RTITIGSAGKTFSVTGWKLGW  251 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTT-----CGG-GEEEEEEHHHHSSCGGGCCEE
T ss_pred             HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC-CCCCHHHcCC-----ccC-eEEEEecchhhcCCCCceEEE
Confidence            99999999999999999999999999999774 3555554321     112 5899999999998 8999998

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=7.5e-33  Score=271.14  Aligned_cols=220  Identities=18%  Similarity=0.283  Sum_probs=189.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.|..                             +.|+.+++++.+.+..... ....|++..|..++|+++
T Consensus        37 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~l~~~l   86 (429)
T 1yiz_A           37 YKPLNLGQGFPDY-----------------------------HAPKYALNALAAAANSPDP-LANQYTRGFGHPRLVQAL   86 (429)
T ss_dssp             HCCEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTCSCG-GGGSCCCSSCCHHHHHHH
T ss_pred             CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhcccc-CccCCCCCCCcHHHHHHH
Confidence            3789999999875                             3478888888888865321 256798888999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC-------
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-------  248 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-------  248 (360)
                      ++++.+++|.+++++ +|++|+|+++++..++++++. +||+|+++.|+|+.+...++..|.+++.++++.++       
T Consensus        87 a~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~-~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  165 (429)
T 1yiz_A           87 SKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD-EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISS  165 (429)
T ss_dssp             HHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC-TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEG
T ss_pred             HHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcC-CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccc
Confidence            999999889888899 999999999999999999984 99999999999999999999999999999988653       


Q ss_pred             -CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHH
Q 018147          249 -GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (360)
Q Consensus       249 -~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~  327 (360)
                       +|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++. .+.++.
T Consensus       166 ~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~  238 (429)
T 1yiz_A          166 ADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRIC  238 (429)
T ss_dssp             GGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS-CCCCGG
T ss_pred             cCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCcChh
Confidence             578999999998865      799999999999999999999999999999999999999999999998764 345554


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+. ..    .+ +++++.|+||.|+ +|+|+||
T Consensus       239 ~~~-~~----~~-~~~~~~s~sK~~~~~G~r~G~  266 (429)
T 1yiz_A          239 TLP-GM----WE-RTITIGSAGKTFSLTGWKIGW  266 (429)
T ss_dssp             GST-TT----GG-GEEEEEEHHHHHTCGGGCCEE
T ss_pred             hcc-CC----cC-ceEEEecchhccCCCCcceEE
Confidence            331 00    12 5799999999998 7999998

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=9.4e-33  Score=270.71  Aligned_cols=218  Identities=17%  Similarity=0.157  Sum_probs=188.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|..                             ..|+.+++++.+.+.+.   ....|++..|..++|+++
T Consensus        44 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~l   91 (437)
T 3g0t_A           44 TKFCRMEMGVPGL-----------------------------PAPQIGIETEIQKLREG---VASIYPNLDGLPELKQEA   91 (437)
T ss_dssp             CCCEECCCCSCCS-----------------------------CCCHHHHHHHHHHHHHT---GGGSCCCTTCCHHHHHHH
T ss_pred             CCEEeccCcCCCC-----------------------------CCCHHHHHHHHHHHhCC---cCcCCCCCCChHHHHHHH
Confidence            4799999999876                             45888999998888752   137899999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--cCCCC--EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCC
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSEND--GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL  252 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  252 (360)
                      ++++.+++|+.+++++|++|+|+++++..++.+++  . +||  +|+++.|+|..+...++..|++++.++++ +++|.+
T Consensus        92 a~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~-~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~  169 (437)
T 3g0t_A           92 SRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTH-KNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEK  169 (437)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSC-TTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTH
T ss_pred             HHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCC-CCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCcc
Confidence            99999999999999999999999999999999997  6 999  99999999999999999999999999998 446789


Q ss_pred             CHHHHHHHH-HHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC---CCH-H
Q 018147          253 ETSEVKKQL-EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF---HSF-K  327 (360)
Q Consensus       253 d~~~L~~~i-~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~---~s~-~  327 (360)
                      |+++|++++ ++      ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.   .++ .
T Consensus       170 d~~~l~~~l~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  243 (437)
T 3g0t_A          170 LREKLESYLQTG------QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQP  243 (437)
T ss_dssp             HHHHHHHHHTTT------CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCC
T ss_pred             CHHHHHHHHhcC------CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhh
Confidence            999999999 43      799999999999999999999999999999999999999999999888743222   011 2


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+ ...    .+ +++++.|+||.|+ +|+|+||
T Consensus       244 ~~-~~~----~~-~~i~~~s~sK~~~~~G~r~G~  271 (437)
T 3g0t_A          244 SV-ANY----TD-NYILALSSSKAFSYAGQRIGV  271 (437)
T ss_dssp             CG-GGT----CS-CEEEEEESTTTTSCGGGCCEE
T ss_pred             cc-CCC----CC-cEEEEEcCccCCCCccceeEE
Confidence            22 111    22 5799999999998 8999998

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.5e-32  Score=267.82  Aligned_cols=216  Identities=24%  Similarity=0.362  Sum_probs=187.3

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|.|..                             ..|+.+.+++.+.+.+.    ...|++..|..++|++++
T Consensus        26 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la   72 (411)
T 2o0r_A           26 GAVNLGQGFPDE-----------------------------DGPPKMLQAAQDAIAGG----VNQYPPGPGSAPLRRAIA   72 (411)
T ss_dssp             TCEESSCSSCSS-----------------------------CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHH
T ss_pred             CeeeccCcCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHH
Confidence            689999998875                             34788888888888652    457998889999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC-CCcCCCHH
Q 018147          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS  255 (360)
Q Consensus       178 ~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~  255 (360)
                      +++.+.+|.+++++ +|++|+|+++|+..++++++ ++||+|+++.|+|+.+...++..|++++.++++++ ++|.+|++
T Consensus        73 ~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~  151 (411)
T 2o0r_A           73 AQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV-EPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDAD  151 (411)
T ss_dssp             HHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred             HHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHH
Confidence            99999889888898 99999999999999999998 49999999999999999999999999999998754 35779999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+. ..  
T Consensus       152 ~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~-~~--  221 (411)
T 2o0r_A          152 ALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA-RHLPLAGFD-GM--  221 (411)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGST-TT--
T ss_pred             HHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcChhhcc-CC--
Confidence            99998865      789999999999999999999999999999999999999999999988764 344554331 10  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ .++++.|+||.|+ +|+|+||
T Consensus       222 --~~-~~i~~~s~sK~~~~~G~r~G~  244 (411)
T 2o0r_A          222 --AE-RTITISSAAKMFNCTGWKIGW  244 (411)
T ss_dssp             --GG-GEEEEEEHHHHTTCTTTCEEE
T ss_pred             --CC-CEEEEeechhhcCCccceEEE
Confidence              12 5799999999997 7999998

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=6.7e-33  Score=270.04  Aligned_cols=240  Identities=18%  Similarity=0.218  Sum_probs=194.5

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++++..++......+...+.+       .    |..++|+++.|.|..                             ..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~-------~----~g~~~idl~~g~~~~-----------------------------~~~   62 (404)
T 2o1b_A           23 SNKLANIPDSYFGKTMGRKIE-------H----GPLPLINMAVGIPDG-----------------------------PTP   62 (404)
T ss_dssp             CHHHHTSCCCTTC-------C-------C----CSSCCEECCCCSCSS-----------------------------CCC
T ss_pred             hhHhhhCCchHHHHHHHHHHh-------c----CCCCEEecCCcCCCC-----------------------------CCC
Confidence            566666666655544332221       1    224789999999875                             347


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      +.+.+++.+.+...   ....|++..|..++|+++++++.+++|.++++ ++|++|+|+++++..++++++. +||+|++
T Consensus        63 ~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~-~gd~Vl~  138 (404)
T 2o1b_A           63 QGIIDHFQKALTIP---ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN-PGDYVLL  138 (404)
T ss_dssp             HHHHHHHHHHTTCH---HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC-TTCEEEE
T ss_pred             HHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC-CCCEEEE
Confidence            77888887776432   14578888899999999999999988988887 7999999999999999999984 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|..+...++..|++++.+++++ ++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       139 ~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  211 (404)
T 2o1b_A          139 PDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFK  211 (404)
T ss_dssp             EESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHT
T ss_pred             cCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999886 4578999999999976      6899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.+++.  +.++..... .    .+ +++++.||||.|+ +|+|+||
T Consensus       212 ~~~~~li~De~~~~~~~~g~--~~~~~~~~~-~----~~-~~i~~~s~sK~~g~~G~r~G~  264 (404)
T 2o1b_A          212 GTDTKIVHDFAYGAFGFDAK--NPSILASEN-G----KD-VAIEIYSLSKGYNMSGFRVGF  264 (404)
T ss_dssp             TSSCEEEEECTTTTCBSSSC--CCCGGGSTT-H----HH-HEEEEEESTTTTTCGGGCCEE
T ss_pred             HcCCEEEEEccchhcccCCC--CCChhhcCC-C----CC-CEEEEEecchhccCchhheEe
Confidence            99999999999999988652  445444310 0    12 5799999999997 8999998

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=2.1e-32  Score=270.41  Aligned_cols=248  Identities=14%  Similarity=0.093  Sum_probs=190.8

Q ss_pred             hccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCC-cCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHH
Q 018147           66 LKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (360)
Q Consensus        66 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p-~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v  144 (360)
                      ..+++....++...+++++++        +.+.+|++++|.| +..+. |                        ...+.+
T Consensus        26 ~~~~~~~~~~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~~~~-~------------------------~v~~av   72 (448)
T 3meb_A           26 SGFPASPPDAILNLTVLYNAD--------TNPKKVNLGVGAYRDESGK-P------------------------WILPAV   72 (448)
T ss_dssp             TTCCCCCCCTTHHHHHHHHHC--------CCTTCEEESSCCCCCTTSC-C------------------------CCCHHH
T ss_pred             hcCCCCCCChHHHHHHHHHhC--------CCCCeEEeecccccCCCCC-E------------------------echHHH
Confidence            345566666778888887765        2246899999999 54221 1                        234555


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC---CCCCCEEE--cCChHHHHHH--HHHHHccCCCCE
Q 018147          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFL--TDGASPAVHM--MMQLLIRSENDG  217 (360)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~---~~~~~I~~--t~Ga~~al~~--~~~~l~~~~gd~  217 (360)
                      .+++.+...+... ....|.+..|.+++|+++++++.   |..   +++++|++  |+|+++++.+  .+..++ .+||+
T Consensus        73 ~~a~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~-~~gd~  147 (448)
T 3meb_A           73 KEAEAIISSDLSK-YNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW-MPKAE  147 (448)
T ss_dssp             HHHHHHHHHCTTT-TCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCC
T ss_pred             HHHHHHHhhcccC-CCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh-CCCCE
Confidence            5555554422111 46789999999999999999983   433   23689999  9999999988  445566 49999


Q ss_pred             EEEcCCCchHHHHHHH----HcCCeEEEeecCCCC-CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHH
Q 018147          218 ILCPIPQYPLYSASIA----LHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~-~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                      |++++|+|+.|...++    ..|++++.+++.+++ +|.+|+++|++++++.   ..+++++++++||||||.+++.+++
T Consensus       148 Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l  224 (448)
T 3meb_A          148 FYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQW  224 (448)
T ss_dssp             EEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHH
T ss_pred             EEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHH
Confidence            9999999999999999    999999999985444 6899999999999752   1146778888999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccCCC-CCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+++|+++|+||+|+++.+++. .+..++..+.. ..   +  ++|+++||||.|+ +|+|+||
T Consensus       225 ~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~---~--~~i~~~S~SK~~g~~G~RiG~  288 (448)
T 3meb_A          225 KELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD-AG---V--EVLVAQSFSKNFGLYGERIGC  288 (448)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-TT---C--CEEEEEECTTTSCCGGGCCEE
T ss_pred             HHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh-cC---C--cEEEEecccccCCCcccccee
Confidence            9999999999999999999999988752 11233433322 11   2  5899999999998 6999998

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=6.7e-32  Score=262.22  Aligned_cols=250  Identities=21%  Similarity=0.325  Sum_probs=197.2

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..+..+....+...+.+++ .    ++    .++|+++.|.|+..+                           ..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~g----~~~idl~~g~~~~~~---------------------------~~   50 (407)
T 2zc0_A            7 LAGRANWIKGSALADVMKKASELQ-K----KG----VKLISLAAGDPDPEL---------------------------IP   50 (407)
T ss_dssp             SCGGGGGCCCCHHHHHHHHHHHHH-H----SS----CCCEECCSCCCCTTT---------------------------SC
T ss_pred             hhhhhccCCchHHHHHHHhhhccc-C----CC----CceEeCCCCCCCchh---------------------------CC
Confidence            345555555554444555554432 1    11    378999999987521                           13


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      ++.+.+++.+.+..... ... |++..|..++|+++++++.+++|.++++++|++|+|+++|+..++++++ ++||+|++
T Consensus        51 ~~~v~~a~~~~~~~~~~-~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~vl~  127 (407)
T 2zc0_A           51 RAVLGEIAKEVLEKEPK-SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-DPGDVVIT  127 (407)
T ss_dssp             HHHHHHHHHHHHHHCGG-GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHHhhccc-ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-CCCCEEEE
Confidence            45677777777765421 245 9888899999999999998888888889999999999999999999998 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEE-EecCCCCcccCCCHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~ii-l~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      +.|+|..+...++..|++++.++++++   ++|+++|+++++....++.++++|+ +++|+||||.+++.+++++|+++|
T Consensus       128 ~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~  204 (407)
T 2zc0_A          128 ENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIA  204 (407)
T ss_dssp             EESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             eCCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHH
Confidence            999999999999999999999998764   5899999999974322333688875 569999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++|+++|+||+|.++.+++. ++.++..+..      .+ +++++.||||.|++|+|+||
T Consensus       205 ~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~------~~-~~i~~~s~sK~~~~G~r~G~  257 (407)
T 2zc0_A          205 SKYDLLIIEDTAYNFMRYEGG-DIVPLKALDN------EG-RVIVAGTLSKVLGTGFRIGW  257 (407)
T ss_dssp             HHHTCEEEEECTTTTSBSSCS-SCCCGGGGCS------SC-CEEEEEESTTTTCTTSCCEE
T ss_pred             HHcCCEEEEECCCcccccCCC-CCCChhhcCC------CC-CEEEEcccccccCCCcceEE
Confidence            999999999999999988664 3445543311      12 57999999999999999997

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=1.7e-32  Score=268.92  Aligned_cols=188  Identities=21%  Similarity=0.257  Sum_probs=161.8

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA  233 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~  233 (360)
                      ..|++..|.++||+++++++.+.+|...+       +++|++|+|+++++..++++++. +||+|+++.|+|+.|...++
T Consensus        72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~  150 (425)
T 2r2n_A           72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-PGDNVLLDEPAYSGTLQSLH  150 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-TTCEEEEESSCCHHHHHHHG
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-CCCEEEEeCCCcHHHHHHHH
Confidence            46999999999999999999998898764       37999999999999999999984 99999999999999999999


Q ss_pred             HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH------hcCCCccEEEE-ecCCCCcccCCCHHHHHHHHHHHHHcCCEE
Q 018147          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAK------AKGITVRALVV-INPGNPTGQVLAEENQRAIVDFCKKEGLVL  306 (360)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~------~~g~~~k~iil-~~P~NPTG~~~~~~~l~~i~~la~~~~i~l  306 (360)
                      ..|++++.++++++   ++|+++|+++++...      ..+.++++|++ .+||||||.+++.+++++|+++|+++|++|
T Consensus       151 ~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l  227 (425)
T 2r2n_A          151 PLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI  227 (425)
T ss_dssp             GGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999998754   689999999886210      00125888877 499999999999999999999999999999


Q ss_pred             EEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       307 I~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |+||+|.++.|++. .+.++..+..      .+ ++|+++||||.|++|+|+||
T Consensus       228 i~De~~~~~~~~g~-~~~~~~~~~~------~~-~~i~~~s~SK~~~~GlRiG~  273 (425)
T 2r2n_A          228 IEDDPYYFLQFNKF-RVPTFLSMDV------DG-RVIRADSFSKIISSGLRIGF  273 (425)
T ss_dssp             EEECTTGGGBSSSS-CCCCTGGGCT------TS-CEEEEEESTTTTCSTTCCEE
T ss_pred             EEECCcccccCCCC-CCCCccccCC------CC-CEEEEccchhhccCccceEE
Confidence            99999999999764 3556554311      22 68999999999999999998

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.5e-32  Score=267.82  Aligned_cols=244  Identities=28%  Similarity=0.390  Sum_probs=202.3

Q ss_pred             ccccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCc
Q 018147           56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSE  135 (360)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~  135 (360)
                      .-++-.++++..++++....+...+.+++++     +    +++|+++.|+|..                          
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~i~l~~~~~~~--------------------------   55 (409)
T 2gb3_A           11 HHMDVFSDRVLLTEESPIRKLVPFAEMAKKR-----G----VRIHHLNIGQPDL--------------------------   55 (409)
T ss_dssp             -----CCHHHHSCCCCTTGGGHHHHHHHHHT-----T----CEEEECSSCCCCS--------------------------
T ss_pred             hhHHHHHHHhhcCCccHHHHHHHHHHHHHhc-----C----CCEEeccCCCCCC--------------------------
Confidence            3456677888888888777788887777654     1    4799999999865                          


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                         ..|+.+++++ +.+..    ....|++..|..++|+++++++.+.+|+++++++|++|+|+++|+..++++++ ++|
T Consensus        56 ---~~~~~v~~a~-~~l~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~g  126 (409)
T 2gb3_A           56 ---KTPEVFFERI-YENKP----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPG  126 (409)
T ss_dssp             ---CCCTHHHHHH-HHTCC----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTT
T ss_pred             ---CCCHHHHHHH-HHHhc----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-CCC
Confidence               3466788888 76643    24579888899999999999999988988899999999999999999999998 499


Q ss_pred             CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHH
Q 018147          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i  295 (360)
                      |+|+++.|+|+.+...++..|++++.++++++++|.+ +++|++++++      ++++|++++|+||||.+++.+++++|
T Consensus       127 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i  199 (409)
T 2gb3_A          127 DEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYL  199 (409)
T ss_dssp             CEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHH
Confidence            9999999999999999999999999999886445666 8888888765      78999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++|+++|+++|+||+|..+.+++.  +.++.   .++    .+ +.+++.||||.|+ +|+|+||
T Consensus       200 ~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~---~~~----~~-~~i~~~s~sK~~g~~G~r~G~  255 (409)
T 2gb3_A          200 VEIAERHGLFLIVDEVYSEIVFRGE--FASAL---SIE----SD-KVVVIDSVSKKFSACGARVGC  255 (409)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCSSC--CCCGG---GSC----CT-TEEEEEESTTTTTCGGGCCEE
T ss_pred             HHHHHHcCCEEEEECcccccccCCC--CCCcc---ccC----CC-CEEEEecchhccCCccceEEE
Confidence            9999999999999999999888663  44431   211    12 4799999999998 7999997

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=3.8e-32  Score=261.94  Aligned_cols=216  Identities=21%  Similarity=0.279  Sum_probs=187.6

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|++++|+|..                             ..|+.+++++.+.+.+.    ...|++.  ..+++++++
T Consensus        28 ~~i~~~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~--~~~l~~~la   72 (391)
T 3dzz_A           28 KELPMWIAEMDF-----------------------------KIAPEIMASMEEKLKVA----AFGYESV--PAEYYKAVA   72 (391)
T ss_dssp             TCEECCSSCCSS-----------------------------CCCHHHHHHHHHHHTTC----CCCCBCC--CHHHHHHHH
T ss_pred             CceeccccCCCC-----------------------------CCCHHHHHHHHHHHhcC----cCCCCCC--CHHHHHHHH
Confidence            688999888776                             56889999998887652    5567766  689999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcCCCHHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~  256 (360)
                      +++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++.|+|..+...++..|++++.++++ ++++|.+|+++
T Consensus        73 ~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  151 (391)
T 3dzz_A           73 DWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT-SPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWAD  151 (391)
T ss_dssp             HHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHH
T ss_pred             HHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-CCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHH
Confidence            9999999988999999999999999999999998 499999999999999999999999999999986 45567799999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++.     ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..    .
T Consensus       152 l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~----~  221 (391)
T 3dzz_A          152 LEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE-DITPAFTVDW----D  221 (391)
T ss_dssp             HHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGSCT----T
T ss_pred             HHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC-CceehhhcCc----c
Confidence            99999731     799999999999999999999999999999999999999999999998764 3555544321    1


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++ +++++.|+||.++ +|+|+||
T Consensus       222 ~~d-~~i~~~s~sK~~g~~G~r~G~  245 (391)
T 3dzz_A          222 AKN-WVVSLISPSKTFNLAALHAAC  245 (391)
T ss_dssp             TGG-GEEEEECSHHHHTCTTTCCEE
T ss_pred             ccC-cEEEEEeChhhccccchhheE
Confidence            234 6899999999997 8999997

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=4.3e-32  Score=263.20  Aligned_cols=206  Identities=21%  Similarity=0.342  Sum_probs=178.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      ..|+.+++++.+.+.+.   ....|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+
T Consensus        53 ~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~  128 (407)
T 3nra_A           53 EPTPGAFDLFSAGVQSG---GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDK  128 (407)
T ss_dssp             CCCTTHHHHHHHHHHHT---HHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC-CTTCE
T ss_pred             CCcHHHHHHHHHHHhcC---CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCE
Confidence            45777999988888753   24468888899999999999999999988877 799999999999999999998 49999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCC----CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDE----ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~  293 (360)
                      |+++.|+|..+...++..|++++.++++.    ++++.+|+++|++++++      ++++|++++|+||||.+++.++++
T Consensus       129 vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~  202 (407)
T 3nra_A          129 VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIG  202 (407)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHH
T ss_pred             EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHH
Confidence            99999999999999999999999999842    34678999999999986      789999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       294 ~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++|++||+++|+||+|..+.+++. .+.++......    ..+ +++++.||||.|+ +|+|+||
T Consensus       203 ~i~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~----~~~-~~i~~~s~sK~~g~~G~r~G~  264 (407)
T 3nra_A          203 QIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAV----DAE-NVVTIMGPSKTESLSGYRLGV  264 (407)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBCTTC-CCCCGGGCTTS----CGG-GEEEEECSSSTTCCGGGCCEE
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCC-CCCChhhcCcc----cCC-cEEEEeCcccccCCCeeeEEE
Confidence            999999999999999999999998864 35555433100    122 5899999999998 8999997

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=4.9e-32  Score=265.78  Aligned_cols=247  Identities=21%  Similarity=0.258  Sum_probs=197.9

Q ss_pred             cccccccChhhhccccc-hhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCcccc
Q 018147           55 AITVDSLNPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDR  133 (360)
Q Consensus        55 ~~~~~~~~~~~~~~~~~-~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~  133 (360)
                      .++...+|+++.+++.. .+..+..+......+   ..    .+++|++++|+|++                        
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~----~~~~i~l~~~~~~~------------------------   68 (432)
T 3ei9_A           20 YKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLK---YP----DAQVISLGIGDTTE------------------------   68 (432)
T ss_dssp             CCCSCCCCHHHHHCCSSCHHHHHHHHHHHHHHH---CT----TCCCEECSSCCCCS------------------------
T ss_pred             eeeccccChHHHhCCCCccHHHHHHHHHhhhhc---CC----CCCeEEccCCCCCC------------------------
Confidence            34566788888888864 566666666555444   11    25899999999996                        


Q ss_pred             CccCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          134 SETQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                           ..|+.+++++.+.+.+... .+...|++..|..+||+++++|+.+  ++.+++++|++|+|+++++..+ ..++ 
T Consensus        69 -----~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~-  139 (432)
T 3ei9_A           69 -----PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMF-  139 (432)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHH-
T ss_pred             -----CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHc-
Confidence                 4588999999888875432 1356898888999999999999974  6678899999999999999975 6666 


Q ss_pred             CCCCEEEEcCCCchHHHHHHHHcCC------------eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          213 SENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      ++||.|+++.|+|++|...++..|.            +++.+++++++++..|+++           ..++++|++++||
T Consensus       140 ~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~v~l~~p~  208 (432)
T 3ei9_A          140 GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----------VGRTDIIFFCSPN  208 (432)
T ss_dssp             CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----------CCCCSEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----------CCCCCEEEEeCCC
Confidence            4999999999999999999998884            6788888766556666443           1278999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-cccccc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSK  359 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvG  359 (360)
                      ||||.+++.+++++|+++|+++|++||+||+|.++++++.  ..++..+. ..    ++ ++|++.||||+|+ +|+|+|
T Consensus       209 NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~--~~~~~~~~-~~----~~-~~i~~~S~SK~~g~~G~r~G  280 (432)
T 3ei9_A          209 NPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN--PRSIFEIP-GA----EE-VAMETASFSNYAGFTGVRLG  280 (432)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC--CSSGGGST-TG----GG-TEEEEEESHHHHCTTTTCCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC--CCChhhcC-CC----CC-eEEEEecchhccCCcccceE
Confidence            9999999999999999999999999999999999988754  44544331 11    23 5899999999997 899999


Q ss_pred             C
Q 018147          360 W  360 (360)
Q Consensus       360 w  360 (360)
                      |
T Consensus       281 ~  281 (432)
T 3ei9_A          281 W  281 (432)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=3.8e-32  Score=263.32  Aligned_cols=204  Identities=19%  Similarity=0.258  Sum_probs=174.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+.+++.+.+...    ...|++.  ..++|+++++++.+++|+++++++|++|+|+++++..++++++ ++||+|
T Consensus        44 ~~~~~v~~a~~~~~~~~----~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~-~~gd~v  116 (399)
T 1c7n_A           44 KNPPELIEGLKKYLDET----VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGV  116 (399)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEE
T ss_pred             CCCHHHHHHHHHHHhcC----CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEE
Confidence            45788999888887652    4568765  8999999999999888888889999999999999999999998 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      +++.|+|+.+...++..|++++.++++ ++++|.+|+++|++++++.     ++++|++++|+||||.+++.+++++|++
T Consensus       117 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~  191 (399)
T 1c7n_A          117 IIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKD  191 (399)
T ss_dssp             EECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred             EEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHH
Confidence            999999999999999999999999986 3335779999999998721     7899999999999999999999999999


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++|+++|+||+|.++.+++. .+.++..+..++.   +  ++|++.|+||.|+ +|+|+||
T Consensus       192 ~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~---~--~~i~~~s~sK~~~~~G~r~G~  249 (399)
T 1c7n_A          192 IVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQLA---D--KTITFTAPSKTFNIAGMGMSN  249 (399)
T ss_dssp             HHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHHH---T--TEEEEECSHHHHTCGGGCCEE
T ss_pred             HHHHcCCEEEEEccccccccCCC-CcccHHHcCcccc---C--cEEEEEeChhhccccchheEE
Confidence            99999999999999999988764 3455544322111   1  4799999999998 8999998

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2.2e-32  Score=266.32  Aligned_cols=228  Identities=15%  Similarity=0.065  Sum_probs=183.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|.|-.....+                        .+++.+.+++.+.+.+..  ....|.+..|..++|+++
T Consensus        30 ~~~i~l~~g~~~~~~~~~------------------------~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~l   83 (412)
T 1ajs_A           30 PRKVNLGVGAYRTDDCQP------------------------WVLPVVRKVEQRIANNSS--LNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             TTCEECCSCCCCCTTSCC------------------------CCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHH
T ss_pred             CCceeeccceecCCCCCc------------------------cccHHHHHHHHHhhhChh--hccCCCCCCCCHHHHHHH
Confidence            479999999973211111                        246778888877763321  356798889999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHH--HHccCCC-----CEEEEcCCCchHHHHHHHHcCCe-EEEeecCC
Q 018147          177 AAGIEARDGFPADPNDIFL--TDGASPAVHMMMQ--LLIRSEN-----DGILCPIPQYPLYSASIALHGGT-LVPYYLDE  246 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~--~l~~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~-~~~v~~~~  246 (360)
                      ++++...+|+.+++++|++  |+|+++|+..+++  .++ .+|     |+|+++.|+|+.|...++..|++ ++.+++++
T Consensus        84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~  162 (412)
T 1ajs_A           84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD  162 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred             HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeec
Confidence            9999776676668899999  9999999999964  445 489     99999999999999999999999 99999865


Q ss_pred             CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCCCC
Q 018147          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHS  325 (360)
Q Consensus       247 ~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s  325 (360)
                      +++|.+|+++|++++++.   +++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+.+
T Consensus       163 ~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  239 (412)
T 1ajs_A          163 TEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA  239 (412)
T ss_dssp             TTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred             CCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchH
Confidence            456899999999998752   22566788899999999999999999999999999999999999999888641 01334


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      +..+.. .    ++ ++|++.||||.|++ |+|+||
T Consensus       240 ~~~~~~-~----~~-~~i~~~s~sK~~~~~G~riG~  269 (412)
T 1ajs_A          240 IRYFVS-E----GF-ELFCAQSFSKNFGLYNERVGN  269 (412)
T ss_dssp             HHHHHH-T----TC-CEEEEEECTTTSCCGGGCEEE
T ss_pred             HHHHhc-c----CC-cEEEEEecccccCCCCcceEE
Confidence            443322 1    23 58999999999998 999998

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=2e-31  Score=255.87  Aligned_cols=231  Identities=23%  Similarity=0.370  Sum_probs=193.0

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..++.+....+...+.+.++.     +    +++|+++.|.|..                             ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~~~i~l~~~~~~~-----------------------------~~   43 (370)
T 2z61_A            2 LSKRLLNFESFEVMDILALAQKLESE-----G----KKVIHLEIGEPDF-----------------------------NT   43 (370)
T ss_dssp             CCHHHHHCCCCTTHHHHHHHHHHHHT-----T----CCCEECCCCSCSS-----------------------------CC
T ss_pred             hhhhhhhccccHHHHHHHHHHHHHhc-----C----CCEEEccCCCCCC-----------------------------CC
Confidence            45666667766666667766665543     1    4789999999875                             34


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+.+++.+.+...    ...|++..|..++|+++++++.+++|+++++++|++|+|+++++..++++++ ++||+|++
T Consensus        44 ~~~v~~a~~~~~~~~----~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~  118 (370)
T 2z61_A           44 PKPIVDEGIKSLKEG----KTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLI  118 (370)
T ss_dssp             CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHHcC----ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-CCCCEEEE
Confidence            788888888888652    4579888899999999999999989988999999999999999999999998 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      +.|+|+.+...++..|++++.++        +|+++|++++++      ++++|++++|+||||.+++.+    |+++|+
T Consensus       119 ~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~  180 (370)
T 2z61_A          119 QNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAY  180 (370)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHH
T ss_pred             eCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHH
Confidence            99999999999999999999887        589999988865      789999999999999999965    999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+||+|.++.+++.  +.++..+. +    ..+ +++++.||||.|+ +|+|+||
T Consensus       181 ~~~~~li~De~~~~~~~~g~--~~~~~~~~-~----~~~-~~i~~~s~sK~~~~~G~r~G~  233 (370)
T 2z61_A          181 ENIPYIISDEIYNGLVYEGK--CYSAIEFD-E----NLE-KTILINGFSKLYAMTGWRIGY  233 (370)
T ss_dssp             HHCSEEEEECTTTTCBSSSC--CCCGGGTC-T----TCS-SEEEEEESTTTTTCGGGCCEE
T ss_pred             HcCCEEEEEcchhhcccCCC--CcCHHHcc-C----CCC-cEEEEecChhccCCccceEEE
Confidence            99999999999999888763  44544331 1    123 5799999999997 7999998

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=3.7e-32  Score=265.01  Aligned_cols=222  Identities=21%  Similarity=0.334  Sum_probs=186.4

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|....                         ....|+.+++++.+.+...   ....|++..|..++|+++
T Consensus        33 ~~~i~l~~g~p~~~~-------------------------~~~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~l   84 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDK-------------------------NLLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAV   84 (416)
T ss_dssp             SCCEECCCCCTTTTS-------------------------CSCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHH
T ss_pred             CCeEEecCcCCCccc-------------------------CCCCCHHHHHHHHHHhhCC---ccCCcCCCCCCHHHHHHH
Confidence            579999999986310                         0145788999988888653   256798888999999999


Q ss_pred             HHHHHh------hcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCc
Q 018147          177 AAGIEA------RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW  250 (360)
Q Consensus       177 a~~l~~------~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  250 (360)
                      |+++.+      ++|+++++++|++|+|+++++..++.+++. +||+|+++.|+|+.|...++..|++++.++++++++|
T Consensus        85 a~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~  163 (416)
T 1bw0_A           85 ATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW  163 (416)
T ss_dssp             HHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC-TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             HHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC-CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCC
Confidence            999983      357778899999999999999999999984 9999999999999999999999999999998766568


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC---CCCCHH
Q 018147          251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK---KFHSFK  327 (360)
Q Consensus       251 ~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~---~~~s~~  327 (360)
                      .+|+++|++++++      +++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++..   .+.++.
T Consensus       164 ~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  237 (416)
T 1bw0_A          164 EADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVA  237 (416)
T ss_dssp             EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTT
T ss_pred             CCCHHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHH
Confidence            8999999998875      6889999999999999999999999999999999999999999999887631   233433


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+    .   .+.++|+++||||.|+ +|+|+||
T Consensus       238 ~~----~---~~~~~i~~~s~sK~~~~~Glr~G~  264 (416)
T 1bw0_A          238 DF----E---TTVPRVILGGTAKNLVVPGWRLGW  264 (416)
T ss_dssp             SS----C---CSCCEEEEEESTTTTSCGGGCCEE
T ss_pred             Hc----c---CCCcEEEEecchhhCCCCCceEEE
Confidence            22    1   1225799999999985 7999998

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=7.4e-32  Score=258.90  Aligned_cols=210  Identities=16%  Similarity=0.202  Sum_probs=184.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|++..                             ..|+.+++++.+.+.+.    ...|++ .| .++|+++
T Consensus        23 ~~~idl~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~-~~-~~lr~~l   67 (377)
T 3fdb_A           23 QGVLPLWVAESDF-----------------------------STCPAVLQAITDAVQRE----AFGYQP-DG-SLLSQAT   67 (377)
T ss_dssp             TTSEECCSSCCCS-----------------------------CCCHHHHHHHHHHHHTT----CCSSCC-SS-CCHHHHH
T ss_pred             CCeeeecccCCCC-----------------------------CCCHHHHHHHHHHHHcC----CCCCCC-CC-HHHHHHH
Confidence            4788888887665                             56889999998888762    557888 77 8999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++.+++|+.+++++|++|+|+++++..+++.++. +||+|+++.|+|..+...++..|++++.++++++    +|+++
T Consensus        68 a~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~-~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~  142 (377)
T 3fdb_A           68 AEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHD  142 (377)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHH
T ss_pred             HHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcC-CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHH
Confidence            999999999989999999999999999999999984 9999999999999999999999999999998764    89999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC-CCCCCCHHHHHHhhCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP-EKKFHSFKKVSRSMGY  335 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~-~~~~~s~~~~~~~~~~  335 (360)
                      |++++++      +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ . .+.++..+..    
T Consensus       143 l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~----  211 (377)
T 3fdb_A          143 VEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH-TVAAGVSDTA----  211 (377)
T ss_dssp             HHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC-CCGGGSCHHH----
T ss_pred             HHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC-CcccHHHccC----
Confidence            9999987      68999999999999999999999999999999999999999999999876 3 3444433321    


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ +++++.||||.|+ +|+|+||
T Consensus       212 --~~-~~i~~~s~sK~~g~~G~r~G~  234 (377)
T 3fdb_A          212 --AS-VCITITAPSKAWNIAGLKCAQ  234 (377)
T ss_dssp             --HH-HEEEEECSTTTTTCGGGCCEE
T ss_pred             --CC-cEEEEEeChHhccCcchhheE
Confidence              12 5799999999995 7999997

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=2.2e-32  Score=266.41  Aligned_cols=246  Identities=18%  Similarity=0.119  Sum_probs=177.8

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCC-cCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p-~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      +..++..++.+   ++...++++++.        +.+++|++++|+| +..                             
T Consensus        16 ~~~~~~~~~~~---~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~~-----------------------------   55 (409)
T 4eu1_A           16 TQGPGSMGKPD---PILGLGQDFRMD--------PAKRKVNLSIGVYRDDA-----------------------------   55 (409)
T ss_dssp             --------------CHHHHHHHHHHC--------CCSSCEECCCSSCCCTT-----------------------------
T ss_pred             HhhcCCCCCCC---hHHHHHHHHhhC--------CCcCceeeeeeEEECCC-----------------------------
Confidence            44555555554   345555555543        2258999999998 551                             


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HHccCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSE  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~--~t~Ga~~al~~~~~---~l~~~~  214 (360)
                      .|+.+.+++.+.   .. .....|.+..|.++||+++++++....+.++++++|.  .|.|+++++..+..   .++ ++
T Consensus        56 ~~~~v~~a~~~a---~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-~~  130 (409)
T 4eu1_A           56 DQPFVLECVKQA---TL-GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-AN  130 (409)
T ss_dssp             SCCCCCHHHHTC---CC-CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-SS
T ss_pred             CCEeecHHHHhc---Cc-cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-CC
Confidence            122244444433   11 1467899999999999999999854333223478884  59999999987644   344 58


Q ss_pred             CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHH
Q 018147          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      ||+|+++.|+|..|...++..|++++.+++.++++|.+|+++|++++++.   ..+++++++++||||||.+++.+++++
T Consensus       131 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~  207 (409)
T 4eu1_A          131 CNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQ  207 (409)
T ss_dssp             CCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999865567899999999999742   114556667899999999999999999


Q ss_pred             HHHHHHHcCCEEEEccCCCCCccCCCC-CCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          295 IVDFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++|+++|+++|+||+|+++.+++.. +..++..+.. .   .+  ++|+++||||+|+ +|+|+||
T Consensus       208 i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~---~~--~~i~~~S~SK~~g~~G~riG~  269 (409)
T 4eu1_A          208 VCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD-M---VP--NLIVAQSFSKNFGLYGHRCGA  269 (409)
T ss_dssp             HHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT-T---SS--CCEEEEECTTTSSCGGGCCEE
T ss_pred             HHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh-h---CC--cEEEEecCcccccCccCCceE
Confidence            999999999999999999999887520 1233333322 1   12  5799999999998 7999998

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=7.4e-32  Score=264.23  Aligned_cols=207  Identities=20%  Similarity=0.240  Sum_probs=174.3

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      ++.+.+++.+.+..... ....|++..|..++|+++|+++.+++|++ +++++|++|+|+++++..++++++ ++||+|+
T Consensus        60 ~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl  137 (425)
T 1vp4_A           60 RKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCV  137 (425)
T ss_dssp             HHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEE
T ss_pred             HHHHHHHHHHHHhhcch-hhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC-CCCCEEE
Confidence            45677777777765311 14579888899999999999998887877 889999999999999999999998 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc--CCCccEEE-EecCCCCcccCCCHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK--GITVRALV-VINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~--g~~~k~ii-l~~P~NPTG~~~~~~~l~~i~  296 (360)
                      ++.|+|..|...++..|++++.++++++   ++|+++|++++++..++  +.++++|+ +++|+||||.+++.+++++|+
T Consensus       138 ~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~  214 (425)
T 1vp4_A          138 LDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALV  214 (425)
T ss_dssp             EEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHH
Confidence            9999999999999999999999998764   58999999999763221  12588884 679999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|+++|+++|+||+|.++.+++. .+.++..+..      .+ ++|++.||||.|++|+|+||
T Consensus       215 ~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~------~~-~~i~~~s~sK~~~~G~r~G~  270 (425)
T 1vp4_A          215 EIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIGG------PE-RVVLLNTFSKVLAPGLRIGM  270 (425)
T ss_dssp             HHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHHHC------TT-TEEEEEESTTTTCGGGCEEE
T ss_pred             HHHHHcCCEEEEECCCccccCCCC-CCcCHHHhCC------CC-CEEEEeccccccccccceEE
Confidence            999999999999999999988764 3556655421      12 47999999999999999998

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.98  E-value=1.1e-31  Score=258.63  Aligned_cols=215  Identities=16%  Similarity=0.313  Sum_probs=186.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|++..                             ..|+.+++++.+.+.+.    ...|++  +..++++++
T Consensus        32 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~--~~~~~~~~l   76 (391)
T 4dq6_A           32 NDLLPMWVADMDF-----------------------------KAAPCIIDSLKNRLEQE----IYGYTT--RPDSYNESI   76 (391)
T ss_dssp             SCSEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTTC----CCCCBC--CCHHHHHHH
T ss_pred             CCceeccccCCCC-----------------------------CCCHHHHHHHHHHHhCC----CCCCCC--CCHHHHHHH
Confidence            5899999998876                             45889999998888652    446665  569999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC--CCCCcCCCH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWGLET  254 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~  254 (360)
                      ++++.+.+|..+++++|++|+|+++++..++..++. +||+|+++.|+|..+...++..|++++.++++  ++++|.+|+
T Consensus        77 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~-~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~  155 (391)
T 4dq6_A           77 VNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTK-ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDY  155 (391)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCH
T ss_pred             HHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCC-CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeH
Confidence            999999999888999999999999999999999984 99999999999999999999999999999988  556788999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      ++|++++++       +++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+..
T Consensus       156 ~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~  227 (391)
T 4dq6_A          156 EDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH-KHIPMASISKEFE  227 (391)
T ss_dssp             HHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHH
T ss_pred             HHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC-CccCHHHcCcccc
Confidence            999998853       88999999999999999999999999999999999999999999998764 3555554432211


Q ss_pred             CCCCCceEEEEeccCcCcc-ccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                          + +++++.|+||.++ +|+|+||
T Consensus       228 ----~-~~i~~~s~sK~~g~~G~r~G~  249 (391)
T 4dq6_A          228 ----K-NTITCMAPTKTFNIAGLQSSY  249 (391)
T ss_dssp             ----H-TEEEEECSHHHHTCGGGCCEE
T ss_pred             ----C-cEEEEEechhhccCcccceEE
Confidence                1 5799999999997 8999997

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.98  E-value=8.8e-32  Score=260.29  Aligned_cols=209  Identities=16%  Similarity=0.126  Sum_probs=171.2

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHcc-CCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~~l~~-~~gd  216 (360)
                      .++.+.+++.+.+.+.   ....|++..|..++|+++++++.++.+..+++++|++  |+|+++|+..+++.+.. .+||
T Consensus        45 ~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd  121 (396)
T 2q7w_A           45 VLTSVKKAEQYLLENE---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK  121 (396)
T ss_dssp             CCHHHHHHHHHHHHHC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCC
T ss_pred             CcHHHHHHHHhhcCcc---cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCC
Confidence            4678888887776653   2567988999999999999999765554467899998  99999999999877631 4999


Q ss_pred             EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                      +|+++.|+|+.|...++..|++++.++++++++|.+|+++|++++++.   .++++++++++||||||.+++.+++++|+
T Consensus       122 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~  198 (396)
T 2q7w_A          122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLA  198 (396)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999999999999864446799999999988641   11366788899999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|+++|+++|+||+|.++.+++...+.++..+.. .    .+ ++|++.||||.|+ +|+|+||
T Consensus       199 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~----~~-~~i~~~s~sK~~~~~G~riG~  257 (396)
T 2q7w_A          199 QLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-M----HK-ELIVASSYSXNFGLYNERVGA  257 (396)
T ss_dssp             HHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH-H----CS-CEEEEEECTTTTTCGGGCCEE
T ss_pred             HHHHHCCCEEEEecccccccCCccchhHHHHHHHh-c----CC-cEEEEEeccccccccccccce
Confidence            99999999999999999988863111334443322 1    12 5899999999999 7999998

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.98  E-value=2.2e-31  Score=258.69  Aligned_cols=241  Identities=21%  Similarity=0.348  Sum_probs=188.9

Q ss_pred             cChhhhcccc-chhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           61 LNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        61 ~~~~~~~~~~-~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      +|+++.++.. ..+..+..+......+   .    +..++|+++.|+++.                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~i~l~~~~~~~-----------------------------~   46 (400)
T 3asa_A            3 RNPHFVSLTKNYLFADLQKRVAQFRLE---N----PQHTVINLSIGDTTQ-----------------------------P   46 (400)
T ss_dssp             CCHHHHTCCCCCHHHHHHHHHHHHHHH---C----TTSCCEECSSCCCCC-----------------------------C
T ss_pred             cchhhhccCCcccHHHHHHHHHHhhhh---c----CCCceEeccCCCCCC-----------------------------C
Confidence            5788877765 3455666666665543   1    225799999998875                             4


Q ss_pred             CCHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .|+.+++++.+.+..... .....|++..|..++|+++|+++.  +|. +++++|++|+|+++++..++..+  .+||+|
T Consensus        47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~~~--~~gd~V  121 (400)
T 3asa_A           47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLSFF--GPNQTV  121 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHHHH--CSSCEE
T ss_pred             CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHHHc--CCCCEE
Confidence            578888888887765321 125679888899999999999974  454 78899999999999999976554  489999


Q ss_pred             EEcCCCchHHHHHHHHcCCe-EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      +++.|+|+.+...++..|.+ ++.++++++++|..|++++           .++++|++++|+||||.+++.+++++|++
T Consensus       122 l~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~v~l~~p~nptG~~~~~~~l~~l~~  190 (400)
T 3asa_A          122 AIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED-----------THIDILCLCSPNNPTGTVLNKDQLRAIVH  190 (400)
T ss_dssp             EEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT-----------CCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc-----------cCccEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            99999999999999999999 9999987655565554321           27899999999999999999999999999


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++|+++|+||+|.++.+++. ...++..+ ..    .++ ++|++.||||.|+ +|+|+||
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~----~~~-~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          191 YAIEHEILILFDAAYSTFISDPS-LPKSIFEI-PD----ARF-CAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             HHHHTTCEEEEECTTGGGCCCTT-SCSSGGGS-TT----GGG-TEEEEEECCGGGTTTTCCCEE
T ss_pred             HHHHcCCEEEEEchhhhhhcCCC-CCCchhhC-CC----CCC-ceEEEecchhhcCCcchheeE
Confidence            99999999999999999887653 23344332 10    022 4799999999997 8999998

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.98  E-value=7.1e-32  Score=262.86  Aligned_cols=229  Identities=14%  Similarity=0.029  Sum_probs=178.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHH-HHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      +++|++++|.|-.....+                        ..++.+.+++.+ .+.. .  ....|++..|..++|++
T Consensus        29 ~~~i~l~~g~~~d~~~~~------------------------~~~~~v~~a~~~~~~~~-~--~~~~y~~~~g~~~lr~~   81 (412)
T 1yaa_A           29 ATKVDLGIGAYRDDNGKP------------------------WVLPSVKAAEKLIHNDS-S--YNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             SSCEECSSCCCBCTTSCB------------------------CCCHHHHHHHHHHHTCT-T--CCCCCCCTTCCHHHHHH
T ss_pred             CCeEEEeeeeeeCCCCCC------------------------CCcHHHHHHHHhhhcCc-c--cccCCCCCCCcHHHHHH
Confidence            478999999973311111                        246778888877 6642 1  25679888999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHH--HHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcC
Q 018147          176 IAAGIEARDGFPADPNDIFL--TDGASPAVHMMM--QLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG  251 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~--~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  251 (360)
                      +++++.+.+|+.+++++|++  |+|+++|+..++  ..++ .+||+|+++.|+|+.|...++..|++++.+++.++++|+
T Consensus        82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  160 (412)
T 1yaa_A           82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS  160 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred             HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence            99999777776678899999  999999999884  3344 499999999999999999999999999999983223578


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCCCCHHHHH
Q 018147          252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVS  330 (360)
Q Consensus       252 ~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~-~~~~s~~~~~  330 (360)
                      +|+++|++++++.   .+...++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .++.++..+.
T Consensus       161 ~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  237 (412)
T 1yaa_A          161 LDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGV  237 (412)
T ss_dssp             ECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHH
T ss_pred             cCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHH
Confidence            9999999999762   01133444589999999999999999999999999999999999999888641 0133443332


Q ss_pred             HhhCCCCCC-ceEEEEeccCcCccc-cccccC
Q 018147          331 RSMGYGEKD-ISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~-~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      . ..   ++ .++|+++||||.|++ |+|+||
T Consensus       238 ~-~~---~~~~~~i~~~s~sK~~~~~GlriG~  265 (412)
T 1yaa_A          238 E-KL---STVSPVFVCQSFAKNAGMYGERVGC  265 (412)
T ss_dssp             H-HT---TTTCCEEEEEECTTTSCCGGGCEEE
T ss_pred             h-cC---CCCcceEEEeccCCCCCCcCCcceE
Confidence            2 11   20 037999999999998 999998

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.97  E-value=2.1e-31  Score=260.69  Aligned_cols=217  Identities=21%  Similarity=0.319  Sum_probs=189.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|++++|++++                             ..|+.+++++.+.+...    ...|+...  .++++++
T Consensus        61 ~~~i~~~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~--~~l~~~l  105 (421)
T 3l8a_A           61 PELLQMWVADMDF-----------------------------LPVPEIKEAIINYGREH----IFGYNYFN--DDLYQAV  105 (421)
T ss_dssp             TTCEECCSSCCCS-----------------------------CCCHHHHHHHHHHHHHC----CSSCBCCC--HHHHHHH
T ss_pred             CCeeecccCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CcCCCCCC--HHHHHHH
Confidence            4789999998877                             45889999998888762    55677653  8999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~  255 (360)
                      ++++.+++|+++++++|++|+|+++|+..+++.++. +||+|+++.|+|..+...++..|.+++.+|++ .+++|.+|++
T Consensus       106 ~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~-~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~  184 (421)
T 3l8a_A          106 IDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE-KGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFE  184 (421)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHH
T ss_pred             HHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC-CCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHH
Confidence            999999999889999999999999999999999984 99999999999999999999999999999987 5667889999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++.     ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+.  
T Consensus       185 ~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~--  256 (421)
T 3l8a_A          185 QLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN-THHSLNTLDASY--  256 (421)
T ss_dssp             HHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCTTG--
T ss_pred             HHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCccHHHcCchh--
Confidence            999999842     799999999999999999999999999999999999999999999998875 355655443221  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ +++++.|+||+|+ +|+|+||
T Consensus       257 --~~-~~i~~~s~sK~~g~~G~~~G~  279 (421)
T 3l8a_A          257 --KD-FTIILSSATKTFNIAGTKNSF  279 (421)
T ss_dssp             --GG-TEEEEECSHHHHTCGGGCCEE
T ss_pred             --cC-cEEEEEeChhhccCchhheEe
Confidence              12 5799999999997 8999997

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=3.3e-31  Score=259.51  Aligned_cols=198  Identities=25%  Similarity=0.439  Sum_probs=168.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-HcC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~g  236 (360)
                      ...|++..|..++|+++|+++.+.+|+.  +++++|++|+|+++++..++++++. +||+|+++.|+|+.|...+. ..|
T Consensus        76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~-~gd~Vl~~~p~y~~~~~~~~~~~g  154 (428)
T 1iay_A           76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD-PGDAFLVPSPYYPAFNRDLRWRTG  154 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC-TTCEEEEESSCCTTHHHHTTTTTC
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC-CCCeEEEccCCCcchHHHHHHhcC
Confidence            4579888899999999999999888866  7889999999999999999999984 99999999999999987554 679


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++++.++++.+++|.+|+++|++++++...++.++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.
T Consensus       155 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~  234 (428)
T 1iay_A          155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence            99999999766678999999999998755555579999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCHHHHHHhh--CCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          317 YVPEKKFHSFKKVSRSM--GYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~--~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++. .+.++..+....  ....+| ++|++.||||+|+ +|+|+||
T Consensus       235 ~~~~-~~~~~~~~~~~~~~~~~~~d-~viv~~s~sK~~g~~Glr~G~  279 (428)
T 1iay_A          235 FDTP-QFVSIAEILDEQEMTYCNKD-LVHIVYSLSKDMGLPGFRVGI  279 (428)
T ss_dssp             CSSS-CCCCHHHHHTSGGGTTSCTT-SEEEEEESTTTSSCGGGCEEE
T ss_pred             cCCC-CccCHHHhccccccccCCCC-cEEEEecchhhcCCCCceEEE
Confidence            8753 355666553210  000023 5899999999997 8999997

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=1.5e-31  Score=258.48  Aligned_cols=214  Identities=19%  Similarity=0.299  Sum_probs=180.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHH-HHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKG-LRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~-lr~~  175 (360)
                      +++|++++|++..                             +.|+.+.+++.+.+..    ....|++.  ..+ +|++
T Consensus        28 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~----~~~~y~~~--~~~~lr~~   72 (390)
T 1d2f_A           28 ADLLPFTISDMDF-----------------------------ATAPCIIEALNQRLMH----GVFGYSRW--KNDEFLAA   72 (390)
T ss_dssp             --CEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTT----CCCCCCCS--CCHHHHHH
T ss_pred             CCeeEeeecCCCC-----------------------------CCCHHHHHHHHHHHhC----CCCCCCCC--ChHHHHHH
Confidence            4788998888765                             4588899998888754    24567765  678 9999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC-CcCCCH
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-GWGLET  254 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~  254 (360)
                      +|+++.+++|+.+++++|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++.++ .|.+|+
T Consensus        73 la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~  151 (390)
T 1d2f_A           73 IAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDM  151 (390)
T ss_dssp             HHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCH
T ss_pred             HHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCH
Confidence            999999988988899999999999999999999998 499999999999999999999999999999987553 577999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      ++|++++++.     ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..   
T Consensus       152 ~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~---  222 (390)
T 1d2f_A          152 GKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNVAR---  222 (390)
T ss_dssp             HHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGTCC---
T ss_pred             HHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcCHHHcch---
Confidence            9999998642     689999999999999999999999999999999999999999999988764 3555543311   


Q ss_pred             CCCCCceEEEEeccCcCcc-ccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+.+   + +.||||.|+ +|+|+||
T Consensus       223 -~~~d---~-~~s~sK~~~~~G~r~G~  244 (390)
T 1d2f_A          223 -GDWA---L-LTSGSKSFNIPALTGAY  244 (390)
T ss_dssp             -SSEE---E-EECSHHHHTCGGGCCEE
T ss_pred             -hhHh---h-ccCccHhhcccChhheE
Confidence             1113   3 999999998 8999997

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.97  E-value=4.9e-31  Score=255.68  Aligned_cols=216  Identities=22%  Similarity=0.317  Sum_probs=177.9

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.|+..+                           ..++.+.+++.+.+.+... ....|++..|..++|+++
T Consensus        32 ~~~i~l~~g~~~~~~---------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~~~~~l~~~l   83 (397)
T 2zyj_A           32 PGILSFAGGLPAPEL---------------------------FPKEEAAEAAARILREKGE-VALQYSPTEGYAPLRAFV   83 (397)
T ss_dssp             TTCEEESSCCCCGGG---------------------------CCHHHHHHHHHHHHHHHHH-HHTSCCCTTCCHHHHHHH
T ss_pred             CCceecCCCCCCchh---------------------------CCHHHHHHHHHHHHHhcch-hhhCCCCCCCCHHHHHHH
Confidence            368999999887521                           1245677777776654211 145788888999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++    |  +++++|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++   ++|+++
T Consensus        84 a~~~----g--~~~~~v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~  153 (397)
T 2zyj_A           84 AEWI----G--VRPEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDA  153 (397)
T ss_dssp             HHHH----T--SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHH
T ss_pred             HHHh----C--CChhhEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHH
Confidence            9998    3  678899999999999999999998 49999999999999999999999999999998764   589999


Q ss_pred             HHHHHHHHHhcCCCccEEE-EecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          257 VKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~ii-l~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      |++++++.     ++++|+ +++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+....+ 
T Consensus       154 l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~-  226 (397)
T 2zyj_A          154 LEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA-RLPSLFELAREAG-  226 (397)
T ss_dssp             HHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC-CCCCHHHHHHHHT-
T ss_pred             HHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC-CCCchhhhCcccC-
Confidence            99999752     578874 679999999999999999999999999999999999999988764 3556665532100 


Q ss_pred             CCCCceEEEEeccCcCccccccccC
Q 018147          336 GEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       + + +++++.|+||.|++|+|+||
T Consensus       227 -~-~-~~i~~~s~sK~~~~G~r~G~  248 (397)
T 2zyj_A          227 -Y-P-GVIYLGSFSKVLSPGLRVAF  248 (397)
T ss_dssp             -C-C-CEEEEEESTTTTCGGGCCEE
T ss_pred             -C-C-eEEEEecccccccccceeEE
Confidence             0 2 57999999999999999998

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=1e-31  Score=263.35  Aligned_cols=190  Identities=18%  Similarity=0.279  Sum_probs=164.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH-c
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-H  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~---I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~-~  235 (360)
                      ...|++..|..++|+++|+++.+++ +++++++   |++|+|+++|+..++++++ ++||+|+++.|+|+.+...++. .
T Consensus        81 ~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~  158 (430)
T 2x5f_A           81 IFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLVFNTRN  158 (430)
T ss_dssp             TSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHTTTT
T ss_pred             ccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHHHHHhc
Confidence            5689998899999999999998875 7788899   9999999999999999998 4999999999999999999999 9


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH-----cCCEEEEcc
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-----EGLVLLADE  310 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~-----~~i~lI~De  310 (360)
                      |++++.+++++++ |.+|+++|++++++.   +.+++++++++||||||.+++.+++++|+++|++     +|+++|+||
T Consensus       159 g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De  234 (430)
T 2x5f_A          159 GANLQTYPIFDKD-GHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDD  234 (430)
T ss_dssp             CCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEeh
Confidence            9999999987654 789999999999752   2258899999999999999999999999999999     999999999


Q ss_pred             CCCCCccCCCCCCCCHH-HHHHhhCCCCCC-ceEEEEeccCcCcc-ccccccC
Q 018147          311 VYQENVYVPEKKFHSFK-KVSRSMGYGEKD-ISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       311 aY~~~~~~~~~~~~s~~-~~~~~~~~~~~~-~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|.++.+++. .+.++. .+ ..+.   ++ +.+|++.||||.|+ +|+|+||
T Consensus       235 ~~~~~~~~~~-~~~~~~~~~-~~~~---~~~~~~i~~~s~sK~~~~~G~riG~  282 (430)
T 2x5f_A          235 AYYGLFYEDV-YTQSLFTAL-TNLH---SNAILPIRLDGATKEFFAWGFRVGF  282 (430)
T ss_dssp             TTTTCBCSSS-CCSCHHHHH-HTTC---CTTEEEEEEEEHHHHTTCGGGCCEE
T ss_pred             hcccccCCcc-cchHHHHHH-hhcc---CCcceEEEEEecccCCCCCCCCeEE
Confidence            9999988764 355665 44 2211   22 12799999999997 8999998

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=6.7e-31  Score=251.55  Aligned_cols=206  Identities=13%  Similarity=0.151  Sum_probs=176.2

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|++..                             +.|+.+++++.+.+..     ...|++..+ .++|+++
T Consensus        30 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~l   74 (365)
T 3get_A           30 KEVIKLASNENPF-----------------------------GTPPKAIECLRQNANK-----AHLYPDDSM-IELKSTL   74 (365)
T ss_dssp             SCCEECSSCCCTT-----------------------------CSCHHHHHHHHHHGGG-----TTSCCCTTC-HHHHHHH
T ss_pred             CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hccCCCCCh-HHHHHHH
Confidence            5789999997775                             4688899998887764     557888776 8999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++..++. +||+|+++.|+|..+...++..|++++.+++ .++++ +|+++
T Consensus        75 a~~~------~~~~~~v~~~~g~~~a~~~~~~~l~~-~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~  145 (365)
T 3get_A           75 AQKY------KVQNENIIIGAGSDQVIEFAIHSKLN-SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKK  145 (365)
T ss_dssp             HHHH------TCCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHH
T ss_pred             HHHh------CCCcceEEECCCHHHHHHHHHHHHhC-CCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHH
Confidence            9998      46789999999999999999999984 9999999999999999999999999999998 33457 99999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc--CCCCCCCCHHHHHHhhC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~--~~~~~~~s~~~~~~~~~  334 (360)
                      |++++++      ++++|++++|+||||.+++.+++.+|+++| ++|+++|+||+|.++.|  .+. .+.+.......  
T Consensus       146 l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~--  215 (365)
T 3get_A          146 LYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK-KHLEPCELIKE--  215 (365)
T ss_dssp             HHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG-GCCCHHHHHHH--
T ss_pred             HHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc-ccccHhHHhcc--
Confidence            9999875      799999999999999999999999999998 57999999999999886  443 24555544332  


Q ss_pred             CCCCCceEEEEeccCcCcc-ccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         .+ ++++++||||.|+ +|+|+||
T Consensus       216 ---~~-~~i~~~s~sK~~~~~G~r~G~  238 (365)
T 3get_A          216 ---FD-NVLYLGTFSKLYGLGGLRIGY  238 (365)
T ss_dssp             ---CT-TEEEEEESSSTTSCTTTCCEE
T ss_pred             ---CC-CEEEEeecchHhcCcchheEE
Confidence               12 5799999999997 8999998

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.97  E-value=8.1e-31  Score=249.76  Aligned_cols=195  Identities=18%  Similarity=0.249  Sum_probs=166.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+..     ...|+ ..|..++|+++|+++      ++++++|++|+|+++++..++..++ ++||+|
T Consensus        29 ~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~------~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~v   95 (354)
T 3ly1_A           29 GMSPKAQAAARDAVVK-----ANRYA-KNEILMLGNKLAAHH------QVEAPSILLTAGSSEGIRAAIEAYA-SLEAQL   95 (354)
T ss_dssp             CCCHHHHHHHHHTGGG-----TTSCC-HHHHHHHHHHHHHHT------TSCGGGEEEESHHHHHHHHHHHHHC-CTTCEE
T ss_pred             CCCHHHHHHHHHHHhh-----CcCCC-CCchHHHHHHHHHHh------CCChHHEEEeCChHHHHHHHHHHHh-CCCCeE
Confidence            5688899998887764     45674 457899999999987      4678999999999999999999998 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.+...++..|++++.++++++  |.+|+++|++++++    .+++++|++++|+||||.+++.+++.+|+++
T Consensus        96 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~  169 (354)
T 3ly1_A           96 VIPELTYGDGEHFAKIAGMKVTKVKMLDN--WAFDIEGLKAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIAS  169 (354)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred             EECCCCchHHHHHHHHcCCEEEEecCCCC--CCCCHHHHHHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence            99999999999999999999999998753  79999999999972    0179999999999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      | ++|+++|+||+|.++.+++.  ..+........    .+ +++++.||||.|+ +|+|+||
T Consensus       170 ~-~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~----~~-~~i~~~s~sK~~g~~G~r~G~  224 (354)
T 3ly1_A          170 K-PANTMFIVDEAYAEFVNDPR--FRSISPMITQG----AE-NIILLKTFSKIHAMAGMRVGY  224 (354)
T ss_dssp             C-CTTEEEEEECTTGGGCCCTT--CCCSHHHHHTT----CS-SEEEEEESSSTTCCGGGCCEE
T ss_pred             C-CCCeEEEEeccHHHhccccc--cCCHHHHhhhc----CC-CEEEEeeChhhccChhhhhee
Confidence            9 89999999999999888764  44544444421    12 5899999999998 8999998

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.97  E-value=1.8e-31  Score=261.36  Aligned_cols=182  Identities=18%  Similarity=0.231  Sum_probs=152.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHHccCC------------CCEEEEcCCCc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRSE------------NDGILCPIPQY  225 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al--~~~~~~l~~~~------------gd~Vlv~~P~y  225 (360)
                      ...|++..|.++||+++|+++      ++++++|++|+|+++++  .++++.+.. +            +|+|+++.|+|
T Consensus        69 ~~~Y~~~~G~~~lr~~ia~~~------~~~~~~i~~t~G~~~al~l~~~~~~l~~-~~~~g~~~~~~~d~~~Vl~~~p~y  141 (422)
T 3d6k_A           69 CRNYGGLLGIADIRELWAEAL------GLPADLVVAQDGSSLNIMFDLISWSYTW-GNNDSSRPWSAEEKVKWLCPVPGY  141 (422)
T ss_dssp             TTSSCCSSCCHHHHHHHHHHH------TCCGGGEEECSSCHHHHHHHHHHHHHHH-CCTTCSSCGGGSSCCEEEEEESCC
T ss_pred             hhCCCCCCCCHHHHHHHHHHh------CCChhHEEEecchHHHHHHHHHHHHhcC-cccccccccccCCCCEEEEeCCcc
Confidence            568999999999999999998      47889999999999997  677788874 5            45799999999


Q ss_pred             hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEE-EecCCCCcccCCCHHHHHHHHHHHH-HcC
Q 018147          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCK-KEG  303 (360)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~ii-l~~P~NPTG~~~~~~~l~~i~~la~-~~~  303 (360)
                      +.|...++.+|++++.++++++   ++|+++|++++++.     ++++|+ +++||||||.+++.+++++|+++|+ ++|
T Consensus       142 ~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~  213 (422)
T 3d6k_A          142 DRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPD  213 (422)
T ss_dssp             HHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred             HHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccC
Confidence            9999999999999999999865   59999999988642     688888 5799999999999999999999999 999


Q ss_pred             CEEEEccCCCC--CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          304 LVLLADEVYQE--NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++||+||+|.+  +.+++ .++.++..+...+..  .+ ++|+++||||...+|+|+||
T Consensus       214 ~~li~De~y~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~i~~~S~SK~~~~GlriG~  268 (422)
T 3d6k_A          214 FRIVWDNAYALHTLSDEF-PIVHNVIEFAQAAGN--PN-RFWFMSSTSKITHAGSGVSF  268 (422)
T ss_dssp             CEEEEECTTTTCBSSSCC-CCCCCHHHHHHHTTC--TT-CEEEEEESTTTSCTTSSCEE
T ss_pred             CEEEEECCccccccCCCC-CCCcChhhHhhccCC--CC-cEEEEcChhhhcCcccceEE
Confidence            99999999986  44333 235566554322211  23 68999999999888999998

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=1.7e-30  Score=250.37  Aligned_cols=205  Identities=25%  Similarity=0.421  Sum_probs=177.1

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|+++.|.|..                             ..|+.+.+++.+.+.+     ...|++..|..++|++++
T Consensus        26 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la   71 (381)
T 1v2d_A           26 GAVNLGQGFPSN-----------------------------PPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALA   71 (381)
T ss_dssp             TCEECCCCSCSS-----------------------------CCCHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHH
T ss_pred             CeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHH
Confidence            689999999875                             3478888888877754     236888889999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC--CCCCcCCCHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWGLETS  255 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~  255 (360)
                      +++      ++++++|++|+|+++++..+++.++ .+||+|+++.|+|+.+...++..|++++.++++  ++ +|.+|++
T Consensus        72 ~~~------~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~  143 (381)
T 1v2d_A           72 EEF------AVEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLS  143 (381)
T ss_dssp             HHH------TSCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHH
T ss_pred             Hhc------CCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHH
Confidence            997      4678899999999999999999998 499999999999999999999999999999986  33 3789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+ +. ...++..+ .    
T Consensus       144 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~-~~~~~~~~-~----  210 (381)
T 1v2d_A          144 ALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GE-RPRRLREF-A----  210 (381)
T ss_dssp             HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SS-CCCCHHHH-C----
T ss_pred             HHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CC-CCCCHHHh-c----
Confidence            99998865      789999999999999999999999999999999999999999999988 42 34555543 1    


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ..+++.|+||.|+ +|+|+||
T Consensus       211 --~~-~~~~~~s~sK~~~~~G~r~G~  233 (381)
T 1v2d_A          211 --PE-RTFTVGSAGKRLEATGYRVGW  233 (381)
T ss_dssp             --TT-TEEEEEEHHHHTTCGGGCCEE
T ss_pred             --CC-CEEEEeechhhcCCcccceEE
Confidence              12 4799999999997 7999998

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=1.6e-30  Score=255.28  Aligned_cols=197  Identities=21%  Similarity=0.399  Sum_probs=171.7

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-HcCC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHGG  237 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~g~  237 (360)
                      ..|++..|.++||+++++++.+.+|  +++++++|++|+|+++|+..++.+++. +||.|+++.|+|..+...+. ..|.
T Consensus        80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~-~gd~vl~~~p~~~~~~~~~~~~~g~  158 (435)
T 3piu_A           80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD-PGEAVLIPTPYYPGFDRDLKWRTGV  158 (435)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC-TTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred             cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC-CCCeEEECCCccccHHHHHHHhcCC
Confidence            5699999999999999999986554  557889999999999999999999984 99999999999999998888 7899


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      +++.++++++++|.+|+++|++++++...++.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.|
T Consensus       159 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~  238 (435)
T 3piu_A          159 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF  238 (435)
T ss_dssp             EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            99999998877788999999999988766666899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHhhCCC----CCCceEEEEeccCcCcc-ccccccC
Q 018147          318 VPEKKFHSFKKVSRSMGYG----EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~----~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++. .+.++.....+.+-.    .++ +++++.||||+|+ +|+|+||
T Consensus       239 ~~~-~~~~~~~~~~~~~~d~~~~~~~-~~i~i~s~sK~~g~~G~r~G~  284 (435)
T 3piu_A          239 SSP-SFISVMEVLKDRNCDENSEVWQ-RVHVVYSLSKDLGLPGFRVGA  284 (435)
T ss_dssp             SSS-CCCCHHHHHHC-------CGGG-GEEEEEESSSSSCCGGGCEEE
T ss_pred             CCC-CCcCHHHhccccccccccCCCC-CEEEEEeeecccCCCceeEEE
Confidence            875 467776654421000    023 5899999999998 8999997

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.97  E-value=2.3e-30  Score=250.39  Aligned_cols=225  Identities=17%  Similarity=0.122  Sum_probs=178.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.|.....                        +...++.+.+++.+.+...   ....|++..|..++|+++
T Consensus        26 ~~~i~l~~g~~~~~~~------------------------~~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~l   78 (394)
T 2ay1_A           26 QGKIDLGVGVYKDATG------------------------HTPIMRAVHAAEQRMLETE---TTKTYAGLSGEPEFQKAM   78 (394)
T ss_dssp             TTCEECCCCSCCCTTS------------------------CCCCCHHHHHHHHHHHHHC---CCCCCCCSSCCHHHHHHH
T ss_pred             ccccccccceeeCCCC------------------------CccCcHHHHHHHHHhcCCc---ccCCCCCCCCcHHHHHHH
Confidence            4789999998743111                        0134677888887776652   266899989999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCC
Q 018147          177 AAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE  253 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  253 (360)
                      ++++...   .+++++|++  |+|+++|+..+++.+.. .+||+|+++.|+|+.|...++..|++++.++++.+++|.+|
T Consensus        79 a~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  155 (394)
T 2ay1_A           79 GELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVD  155 (394)
T ss_dssp             HHHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEEC
T ss_pred             HHHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccC
Confidence            9998532   337889999  99999999999987751 38999999999999999999999999999998654567899


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       254 ~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      +++|++++++.   ..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+..++..+. ..
T Consensus       156 ~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~  231 (394)
T 2ay1_A          156 FEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA-SR  231 (394)
T ss_dssp             HHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHh-hc
Confidence            99999998741   113566777899999999999999999999999999999999999998875310122333332 22


Q ss_pred             CCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          334 GYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .   +  ++|+++||||.|+ +|+|+||
T Consensus       232 ~---~--~~i~~~s~sK~~~~~G~riG~  254 (394)
T 2ay1_A          232 I---P--EVLIAASCSKNFGIYRERTGC  254 (394)
T ss_dssp             C---S--SEEEEEECTTTTTCGGGCEEE
T ss_pred             C---C--CEEEEEeccCCCcCcCCccce
Confidence            2   2  4799999999998 8999998

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.97  E-value=3e-31  Score=259.90  Aligned_cols=185  Identities=17%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHHccC-C----------CCEEEEcCCCc
Q 018147          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRS-E----------NDGILCPIPQY  225 (360)
Q Consensus       159 ~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al--~~~~~~l~~~-~----------gd~Vlv~~P~y  225 (360)
                      ....|++..|.++||+++|+++      ++++++|++|+|+++++  ..++++++.. +          ||+|+++.|+|
T Consensus        70 ~~~~Y~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y  143 (427)
T 3ppl_A           70 DVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGY  143 (427)
T ss_dssp             BTTSSCCSSCCHHHHHHHHHHH------TSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCC
T ss_pred             hhcCCCCCCCcHHHHHHHHHHh------CCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCc
Confidence            3678999999999999999998      57889999999999999  5888887731 5          89999999999


Q ss_pred             hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHH-HHcC
Q 018147          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKEG  303 (360)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la-~~~~  303 (360)
                      +.|...++.+|++++.++++++   ++|+++|+++++.     .++++|+++ +||||||.+++.+++++|+++| +++|
T Consensus       144 ~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~  215 (427)
T 3ppl_A          144 DRHFSITERFGFEMISVPMNED---GPDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD  215 (427)
T ss_dssp             HHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred             HHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCC
Confidence            9999999999999999999875   6999999998842     178888877 8899999999999999999999 9999


Q ss_pred             CEEEEccCCCCCccCCCC-CCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          304 LVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++||+||+|.++.|++.. .+.++..+.....  ..+ ++|+++||||...+|+|+||
T Consensus       216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~~~S~SK~~~~G~r~G~  270 (427)
T 3ppl_A          216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAG--NPN-RFWAFTSTSKITLAGAGVSF  270 (427)
T ss_dssp             CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT--CTT-SEEEEEESTTTSCTTSSCEE
T ss_pred             CEEEEECCCcccccCCCCCCccchhhhhhccC--CCC-cEEEEechhhccCcCccEEE
Confidence            999999999998887642 2446665432111  123 68999999999888999998

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.97  E-value=5e-31  Score=257.74  Aligned_cols=219  Identities=16%  Similarity=0.230  Sum_probs=174.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHH--HHHHcCCCCCCCCC-CCCcCcHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAW--QILDQIPGRATGAY-SHSQGIKGLR  173 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~--~~l~~~~~~~~~~Y-~~~~G~~~lr  173 (360)
                      ..+|+++.|.|+...                          ...|+.+.+++.  +.+. .. .....| ++..|.++||
T Consensus        25 ~~~i~l~~g~p~~~~--------------------------~~~~~~v~~a~~~~~~~~-~~-~~~~~Yp~~~~g~~~lr   76 (423)
T 3ez1_A           25 GLNLNMQRGQPADAD--------------------------FDLSNGLLTVLGAEDVRM-DG-LDLRNYPGGVAGLPSAR   76 (423)
T ss_dssp             TCCEESCCCCCCHHH--------------------------HHTTGGGGGSCCGGGCEE-TT-EETTSSCSCTTCCHHHH
T ss_pred             CceEecCCCCCChHh--------------------------CCCcHHHHHHHhhhHHhh-cc-hhhhCCCCCCCChHHHH
Confidence            378999999999300                          022445555543  3333 11 125789 8899999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCEEEcCChHHHHH--HHHHHHccC--C---------CCEEEEcCCCchHHHHHHHHcCCeEE
Q 018147          174 DTIAAGIEARDGFPADPNDIFLTDGASPAVH--MMMQLLIRS--E---------NDGILCPIPQYPLYSASIALHGGTLV  240 (360)
Q Consensus       174 ~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~--~~~~~l~~~--~---------gd~Vlv~~P~y~~~~~~~~~~g~~~~  240 (360)
                      +++|+++      ++++++|++|+|+++++.  .++++++ .  +         ||+|+++.|+|..|...++..|++++
T Consensus        77 ~~ia~~~------~~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~  149 (423)
T 3ez1_A           77 ALFAGYL------DVKAENVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELL  149 (423)
T ss_dssp             HHHHHHT------TSCGGGEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred             HHHHHHh------CCChhhEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEE
Confidence            9999998      578899999999999998  8888887 4  6         69999999999999999999999999


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHH-HHcCCEEEEccCCCCCccC
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la-~~~~i~lI~DeaY~~~~~~  318 (360)
                      .++++++   ++|+++|++++++    .+++++|+++ +||||||.+++.+++++|+++| +++|+++|+||+|..+.|.
T Consensus       150 ~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~  222 (423)
T 3ez1_A          150 TVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV  222 (423)
T ss_dssp             EEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC
T ss_pred             eccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC
Confidence            9999865   6999999999951    1278888766 8999999999999999999999 9999999999999987665


Q ss_pred             C-C-CCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          319 P-E-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       319 ~-~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      + . ..+.++..+......  ++ ++|+++||||.+.+|+|+||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~--~~-~~i~~~S~sK~~~~G~r~G~  263 (423)
T 3ez1_A          223 EEDRAEPVNFVVLARDAGY--PD-RAFVFASTSKITFAGAGLGF  263 (423)
T ss_dssp             SSSCCCCCCHHHHHHHHTC--TT-SEEEEEESTTTSCSSSSCEE
T ss_pred             CCCCCCCcchhhhhhccCC--CC-eEEEEeCchhhccCCcceEE
Confidence            4 2 235566655322111  33 68999999999888999998

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=2.6e-30  Score=247.27  Aligned_cols=204  Identities=16%  Similarity=0.213  Sum_probs=170.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|++..                             ..|+.+++++.+.+..     ...|+. .|..++|+++
T Consensus        32 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~-~~~~~lr~~l   76 (363)
T 3ffh_A           32 TKITKLSSNENPL-----------------------------GTSKKVAAIQANSSVE-----TEIYPD-GWASSLRKEV   76 (363)
T ss_dssp             SCCEECSSCSCTT-----------------------------CCCHHHHHHHHTCBSC-----CCBC-----CHHHHHHH
T ss_pred             CceEEccCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCC-cchHHHHHHH
Confidence            5899999997765                             4578888887664432     456754 5789999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++      ++++++|++|+|+++++..++++++. +||+|+++.|+|..+...++..|++++.+++++  ++.+|+++
T Consensus        77 a~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~-~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~  147 (363)
T 3ffh_A           77 ADFY------QLEEEELIFTAGVDELIELLTRVLLD-TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEG  147 (363)
T ss_dssp             HHHH------TCCGGGEEEESSHHHHHHHHHHHHCS-TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHH
T ss_pred             HHHh------CCChhhEEEeCCHHHHHHHHHHHHcc-CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHH
Confidence            9998      46789999999999999999999984 999999999999999999999999999999886  36899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++      ++++|++++|+||||.+++.+++.+|++.|++ |+++|+||+|.++.+ +.  ..+.......    
T Consensus       148 l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~~~~~~~~~----  213 (363)
T 3ffh_A          148 MLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PEKHEKLVRT----  213 (363)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC--CCCCGGGGGT----
T ss_pred             HHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc--ccCHHHHhhc----
Confidence            9999876      79999999999999999999999999888887 999999999999887 42  3333333221    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ++ ++|++.||||.|+ +|+|+||
T Consensus       214 -~~-~~i~~~s~sK~~g~~G~r~G~  236 (363)
T 3ffh_A          214 -YK-NLIITRTFSKIYGLASARVGY  236 (363)
T ss_dssp             -CT-TEEEEEESSSTTCCSSCCCEE
T ss_pred             -CC-CEEEEeechhhhcCchhceee
Confidence             23 5899999999998 8999997

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.97  E-value=3.9e-31  Score=267.70  Aligned_cols=206  Identities=17%  Similarity=0.244  Sum_probs=165.9

Q ss_pred             ccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHH-HhhcCCCC---CCCCEEEcCChHHHHH
Q 018147          130 ILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGI-EARDGFPA---DPNDIFLTDGASPAVH  204 (360)
Q Consensus       130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l-~~~~g~~~---~~~~I~~t~Ga~~al~  204 (360)
                      .++++.+ +...++.+++++.+.+.      ...|++..|..++|+++++++ .++++..+   ++++|++|+|+++++.
T Consensus       106 ~i~l~~g~~~~~~~~~~~al~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~  179 (546)
T 2zy4_A          106 SLSYVRDQLGLDPAAFLHEMVDGIL------GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA  179 (546)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHH------TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred             hhecccCCCCCCChHHHHHHHHhhh------cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence            4555555 22334556666655553      247999999999999987755 55544332   5689999999999999


Q ss_pred             HHHHHH-----ccCCCCEEEEcCCCchHHHHHHHH--cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 018147          205 MMMQLL-----IRSENDGILCPIPQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (360)
Q Consensus       205 ~~~~~l-----~~~~gd~Vlv~~P~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~  277 (360)
                      .+++++     + ++||+|++++|+|+.|...+..  .|++++.++++++++|.+|+++|++++++      ++++|+++
T Consensus       180 ~~~~~l~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~  252 (546)
T 2zy4_A          180 YIFESLKLNGLL-KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCV  252 (546)
T ss_dssp             HHHHHHHHTTSS-CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEE
T ss_pred             HHHHHhhhhhcC-CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEE
Confidence            999884     5 5999999999999999988655  46899999998887899999999887654      79999999


Q ss_pred             cCCCCcccCCCHHHHHHHHHHH--HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-c
Q 018147          278 NPGNPTGQVLAEENQRAIVDFC--KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-F  354 (360)
Q Consensus       278 ~P~NPTG~~~~~~~l~~i~~la--~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g  354 (360)
                      |||||||.+++.+++++|+++|  +++|++||+||+|.++.++    +.++....       ++ ++|+++||||.|+ +
T Consensus       253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~~-------~~-~~i~~~S~SK~~g~~  320 (546)
T 2zy4_A          253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAIC-------PE-NTLLVYSFSKYFGAT  320 (546)
T ss_dssp             SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHHC-------GG-GEEEEEESTTTTTCG
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHhC-------CC-CEEEEEeCccccCCC
Confidence            9999999999999999999999  7789999999999998753    44555432       22 5899999999996 7


Q ss_pred             cccccC
Q 018147          355 HFFSKW  360 (360)
Q Consensus       355 ~~RvGw  360 (360)
                      |+|+||
T Consensus       321 GlRiG~  326 (546)
T 2zy4_A          321 GWRLGV  326 (546)
T ss_dssp             GGCEEE
T ss_pred             CcceEE
Confidence            999998

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=6.8e-29  Score=238.47  Aligned_cols=199  Identities=17%  Similarity=0.207  Sum_probs=163.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      +.|+.+.+++.+.+.+... ....|+...+ .++|+++++++.+++|+++++++|++|+|+++++..++++++ ++||+|
T Consensus        43 ~~~~~v~~a~~~~~~~~~~-~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~~gd~V  119 (369)
T 3cq5_A           43 PPSEALVADLVATVDKIAT-ELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-GPGRTA  119 (369)
T ss_dssp             CCCHHHHHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-STTCEE
T ss_pred             CCCHHHHHHHHHHHHhccc-ccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-CCCCEE
Confidence            4588899998888765321 2557877766 799999999999998988899999999999999999999998 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.+...++..|++++.++.++  +|.+|+++|++++++.     ++++|++++|+||||.+++.+++.+|+  
T Consensus       120 l~~~~~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~--  190 (369)
T 3cq5_A          120 LGFQPSYSMHPILAKGTHTEFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERII--  190 (369)
T ss_dssp             EEEESSCTHHHHHHHHTTCEEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHH--
T ss_pred             EEcCCChHHHHHHHHHcCCEEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHH--
Confidence            9999999999999999999999999653  4789999999999763     689999999999999999966555555  


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       +.+++++|+||+|.++.++     .+......    .+++ +++++.||||.|+ +|+|+||
T Consensus       191 -~~~~~~li~De~~~~~~~~-----~~~~~~~~----~~~~-~~i~~~s~sK~~~~~G~r~G~  242 (369)
T 3cq5_A          191 -NVAPGIVIVDEAYAEFSPS-----PSATTLLE----KYPT-KLVVSRTMSKAFDFAGGRLGY  242 (369)
T ss_dssp             -HHCSSEEEEECTTGGGCCS-----CCGGGGTT----TCTT-TEEEEEESSSTTSCGGGCCEE
T ss_pred             -HhCCCEEEEECCchhhcCC-----cchHHHHh----hCCC-CEEEEEechHhcCCcccceEE
Confidence             4556999999999997653     12222211    1231 3799999999997 7999998

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.94  E-value=2.3e-32  Score=264.73  Aligned_cols=216  Identities=21%  Similarity=0.342  Sum_probs=183.3

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++|++++|+|++                             ..|+.+.+++.+.+..    ....|++.  ..++|++++
T Consensus        32 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~----~~~~y~~~--~~~l~~~la   76 (392)
T 3b1d_A           32 QLLPAWIADMDF-----------------------------EVMPEVKQAIHDYAEQ----LVYGYTYA--SDELLQAVL   76 (392)
Confidence            789999999876                             4477788888777654    24567765  789999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC-CCcCCCHHH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSE  256 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~  256 (360)
                      +++.+.+|+++++++|++|+|+++++..++++++. +||+|+++.|+|+.+...++..|++++.++++++ ++|.+|+++
T Consensus        77 ~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~  155 (392)
T 3b1d_A           77 DWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTK-EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQ  155 (392)
Confidence            99998888888899999999999999999999984 9999999999999999999999999999998533 357899999


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      |++++++.     ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..++   
T Consensus       156 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~---  226 (392)
T 3b1d_A          156 LENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH-EHVSFNTVSPDF---  226 (392)
Confidence            99998732     688999999999999999999999999999999999999999999998764 344554442211   


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ +++++.||||.|+ +|+|+||
T Consensus       227 -~~-~~i~~~s~sK~~~~~G~r~G~  249 (392)
T 3b1d_A          227 -KD-FALVLSSATKTFNIAGTKNSY  249 (392)
Confidence             12 5799999999998 8999998

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.96  E-value=2.7e-30  Score=260.96  Aligned_cols=207  Identities=21%  Similarity=0.228  Sum_probs=171.3

Q ss_pred             ccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhh-cC-CCCC-CCCEEEcCChHHHHHH
Q 018147          130 ILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR-DG-FPAD-PNDIFLTDGASPAVHM  205 (360)
Q Consensus       130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~-~g-~~~~-~~~I~~t~Ga~~al~~  205 (360)
                      +++++.+ +...|+.+++++.+.+..     ...|.+..|.+++|+++++++.++ ++ +.+. +++|++|+|+++++..
T Consensus       105 ~i~l~~g~~~~~~~~~v~a~~~~~~~-----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~  179 (533)
T 3f6t_A          105 AVNYCHTELGLNRDKVVAEWVNGAVA-----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVY  179 (533)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHH
T ss_pred             heeccCCCCCcCCcHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHH
Confidence            4555555 333467788877776654     222447789999999999999776 34 5555 4799999999999999


Q ss_pred             HHHH-----HccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC--CCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          206 MMQL-----LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE--ATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       206 ~~~~-----l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      ++.+     ++ ++||+|+++.|+|..|...++..|++++.++++.  +++|++|+++|++++++      ++++|++++
T Consensus       180 ~~~~l~~~~l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~------~~k~v~l~~  252 (533)
T 3f6t_A          180 AFHSLAENHLL-KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVVN  252 (533)
T ss_dssp             HHHHHHHTTSS-CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT------TEEEEEEES
T ss_pred             HHHHhhhhhcc-CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC------CCeEEEEeC
Confidence            9998     56 5999999999999999999999999999999865  56789999999998865      799999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHH-HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccc
Q 018147          279 PGNPTGQVLAEENQRAIVDFCK-KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHF  356 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~-~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~  356 (360)
                      ||||||.+++.+++++|+++|+ ++|++||+||+|.++.++    +.++....       ++ ++|+++||||.|+ +|+
T Consensus       253 p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~----~~~~~~~~-------~~-~~i~~~S~SK~~g~~G~  320 (533)
T 3f6t_A          253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN----FKSIYSVV-------PY-NTMLVYSYSKLFGCTGW  320 (533)
T ss_dssp             SCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT----CCCHHHHS-------GG-GEEEEEESHHHHTCGGG
T ss_pred             CCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC----ccCHhhcC-------CC-CEEEEecCcccCCCccc
Confidence            9999999999999999999999 589999999999998764    33444332       22 6899999999997 799


Q ss_pred             cccC
Q 018147          357 FSKW  360 (360)
Q Consensus       357 RvGw  360 (360)
                      |+||
T Consensus       321 RiG~  324 (533)
T 3f6t_A          321 RLGV  324 (533)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            9998

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.96  E-value=2.9e-29  Score=240.36  Aligned_cols=193  Identities=18%  Similarity=0.280  Sum_probs=164.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+.+.   ....|+. .|..++|+++++++    |.. ++++|++|+|+++++..+++.++. +||+|
T Consensus        43 ~~~~~v~~a~~~~~~~~---~~~~y~~-~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~-~gd~V  112 (367)
T 3euc_A           43 RLPPALRSELAARLGEV---ALNRYPV-PSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLALAAAR-PGAKV  112 (367)
T ss_dssp             CCCHHHHHHHHHHHHHH---HTTCSCC-CCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHHHTCC-TTCEE
T ss_pred             CCCHHHHHHHHHHhhhh---hhhcCCC-CcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHHHHcC-CCCEE
Confidence            56889999988887743   1456876 47899999999998    322 678999999999999999999984 99999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..+...++..|++++.+++++  +|.+|+++|++++++.     ++++|++++||||||.+++.+++++|+++
T Consensus       113 l~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~  185 (367)
T 3euc_A          113 MAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRA  185 (367)
T ss_dssp             EEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHh
Confidence            9999999999999999999999999886  4789999999999875     79999999999999999999999999999


Q ss_pred             HHHc--CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          299 CKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       299 a~~~--~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |++|  |+++|+||+|.++.+.+   ...   ...    . .+ +++++.||||...+|+|+||
T Consensus       186 ~~~~~~~~~li~De~~~~~~~~~---~~~---~~~----~-~~-~~i~~~s~sK~~~~G~r~G~  237 (367)
T 3euc_A          186 AQGSVCRSLVVVDEAYQPFAQES---WMS---RLT----D-FG-NLLVMRTVSKLGLAGIRLGY  237 (367)
T ss_dssp             TBTTSCBCEEEEECTTCCSSSCC---SGG---GGG----T-CT-TEEEEEECCCTTSCSCCEEE
T ss_pred             hhhcCCCcEEEEeCcchhhcccc---hHH---HHh----h-CC-CEEEEecchhhcccccCcee
Confidence            9999  99999999999976432   211   111    1 12 57999999999667999998

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.96  E-value=4.7e-29  Score=239.56  Aligned_cols=177  Identities=21%  Similarity=0.353  Sum_probs=158.2

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      ...|++..|..+||+++++++.     .+++++|++|+|+++|+..++.+++ ++||+|+++.|+|..+...++..|+++
T Consensus        56 ~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~  129 (375)
T 3op7_A           56 KLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYDIPKSLGAEV  129 (375)
T ss_dssp             CCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHHHHHHTTCEE
T ss_pred             CcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence            6689999999999999999872     3678999999999999999999998 499999999999999999999999999


Q ss_pred             EEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       240 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      +.++++.+++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++
T Consensus       130 ~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~  203 (375)
T 3op7_A          130 DLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD  203 (375)
T ss_dssp             EEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC
T ss_pred             EEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC
Confidence            999998776788999999999875      79999999999999999999999999999999999999999999987762


Q ss_pred             CCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       320 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         ..++...    .    + +++++.||||.++ +|+|+||
T Consensus       204 ---~~~~~~~----~----~-~~i~~~s~sK~~~~~G~r~G~  233 (375)
T 3op7_A          204 ---VPSIIEV----Y----D-KGIAVNSLSKTYSLPGIRIGW  233 (375)
T ss_dssp             ---CCCHHHH----C----T-TEEEEEESSSSSSCGGGCCEE
T ss_pred             ---CCchhhh----c----C-CEEEEeEChhhcCCcccceEE
Confidence               3444332    1    2 4799999999998 8999998

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=3.8e-29  Score=239.65  Aligned_cols=203  Identities=19%  Similarity=0.260  Sum_probs=164.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|.+..                             +.|+.+++++.+.+..     ...|+. .|..++|+++
T Consensus        24 ~~~idl~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~-~~~~~l~~~l   68 (364)
T 1lc5_A           24 DQLLDFSANINPL-----------------------------GMPVSVKRALIDNLDC-----IERYPD-ADYFHLHQAL   68 (364)
T ss_dssp             GGSEECSSCCCTT-----------------------------CCCHHHHHHHHHTGGG-----GGSCCC-TTCHHHHHHH
T ss_pred             cceEEeccccCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCC-CCHHHHHHHH
Confidence            4688998887654                             4578888888776654     456765 4799999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      ++++      ++++++|++|+|+++++..+++.+   +||+|+++.|+|+.+...++..|++++.++++++++|.+ +++
T Consensus        69 a~~~------~~~~~~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~  138 (364)
T 1lc5_A           69 ARHH------QVPASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDA  138 (364)
T ss_dssp             HHHH------TSCGGGEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTT
T ss_pred             HHHH------CcCHHHEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHH
Confidence            9998      467889999999999999999988   469999999999999999999999999999876444554 454


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +.+.+.+      +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.    ++.....    .
T Consensus       139 ~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~----~~~~~~~----~  204 (364)
T 1lc5_A          139 ILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET----GFIPALK----D  204 (364)
T ss_dssp             HHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC----CSGGGCT----T
T ss_pred             HHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc----chhhHhc----c
Confidence            5444432      688999999999999999999999999999999999999999999877532    1111111    1


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++  +++++.|+||.|+ +|+|+||
T Consensus       205 ~~--~~i~~~s~sK~~~~~G~r~G~  227 (364)
T 1lc5_A          205 NP--HIWVLRSLTKFYAIPGLRLGY  227 (364)
T ss_dssp             CT--TEEEEEESTTTTTCTTTCCEE
T ss_pred             CC--CEEEEEECchhhcCCccceEE
Confidence            12  4799999999998 8999998

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=9.7e-30  Score=250.10  Aligned_cols=186  Identities=19%  Similarity=0.223  Sum_probs=152.7

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC--------------EEEEc-CCCc
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--------------GILCP-IPQY  225 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd--------------~Vlv~-~P~y  225 (360)
                      ..|.+..|.+++|+++|+++.+.+|+.+++++|++|+|+++++..++.+++. +||              +|+++ .|+|
T Consensus        77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-~gd~~~~~~~~~~g~~~~vi~~~~p~~  155 (444)
T 3if2_A           77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-AFVNEHSQDKESKSVDKSILLPLTPEY  155 (444)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-EEECC-------CEEEEEEEESSSSCC
T ss_pred             hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-CCccccccccccccccceEEEeCCCCc
Confidence            5799999999999999999999999999999999999999999999999984 888              78886 8999


Q ss_pred             hHHHHH------HHHcCCeEEEeecCCCC---CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHH
Q 018147          226 PLYSAS------IALHGGTLVPYYLDEAT---GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (360)
Q Consensus       226 ~~~~~~------~~~~g~~~~~v~~~~~~---~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~  296 (360)
                      +.|...      +...|..++.+++++++   +|.+|+++|++++...   .+++++|++++||||||.+++.+++++|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~  232 (444)
T 3if2_A          156 IGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLA  232 (444)
T ss_dssp             GGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             cchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHH
Confidence            999763      34567888888887532   4789999999885321   12789999999999999999999999999


Q ss_pred             HHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       297 ~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|+++|+++|+||+|..+....  .+....   .    ...+ ++|++.||||...+|+|+||
T Consensus       233 ~~a~~~~~~li~De~~~~~~~~~--~~~~~~---~----~~~~-~~i~~~S~sK~~~~G~r~G~  286 (444)
T 3if2_A          233 EIAKRYDIPLIIDNAYGMPFPNI--IYSDAH---L----NWDN-NTILCFSLSKIGLPGMRTGI  286 (444)
T ss_dssp             HHHHHTTCCEEEECTTCTTTTCC--BCSCCC---C----CCCT-TEEEEEESTTTTCGGGCCEE
T ss_pred             HHHHHCCCEEEEECCCCCccccc--cccccc---c----cCCC-CEEEEechhhccCCCCceEE
Confidence            99999999999999998632111  011100   0    1123 58999999998778999998

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.96  E-value=2.1e-28  Score=233.38  Aligned_cols=187  Identities=19%  Similarity=0.300  Sum_probs=158.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+..     ...|+. .+..++|+++++++      ++++++|++|+|+++++..++..+     |+|
T Consensus        39 ~~~~~v~~a~~~~~~~-----~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~t~al~~~~~~~-----d~v  101 (361)
T 3ftb_A           39 GIPKSFLNNIDEGIKN-----LGVYPD-VNYRRLNKSIENYL------KLKDIGIVLGNGASEIIELSISLF-----EKI  101 (361)
T ss_dssp             CSCHHHHTTHHHHHHG-----GGSCCC-TTCHHHHHHHHHHH------TCCSCEEEEESSHHHHHHHHHTTC-----SEE
T ss_pred             CCCHHHHHHHHHHHHH-----hcCCCC-ccHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHc-----CcE
Confidence            5688899998888875     345744 67899999999998      467899999999999999998876     899


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..+...++..|++++.+++++++  .+++++|++++++       ++++++++|+||||.+++.+++++|+++
T Consensus       102 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~  172 (361)
T 3ftb_A          102 LIIVPSYAEYEINAKKHGVSVVFSYLDENM--CIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKL  172 (361)
T ss_dssp             EEEESCCTHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred             EEecCChHHHHHHHHHcCCeEEEeecCccc--CCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998765  4567888887752       7899999999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++|+++|+||+|.++.++ .  ..+......    . .+ +++++.|+||.++ +|+|+||
T Consensus       173 ~~~~~~~li~De~~~~~~~~-~--~~~~~~~~~----~-~~-~~i~~~s~sK~~~~~G~r~g~  226 (361)
T 3ftb_A          173 AEEKKKTIIIDEAFIEFTGD-P--SSSFVGEIK----N-YS-CLFIIRAMTKFFAMPGIRFGY  226 (361)
T ss_dssp             HHHHTCEEEEECSSGGGTCC-T--TSSSGGGTT----T-CS-SEEEEEESSSTTSCGGGCCEE
T ss_pred             hhhcCCEEEEECcchhhcCC-c--ccchhHhcc----c-CC-CEEEEeeChhhcCCCCcceeE
Confidence            99999999999999998886 2  223222211    1 22 5799999999998 8999998

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.96  E-value=6.6e-29  Score=237.84  Aligned_cols=172  Identities=21%  Similarity=0.347  Sum_probs=147.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ...|++. +..++|+++|+++      ++++++|++|+|+++++..++++++ ++| |+|+++.|+|+.|...++..|++
T Consensus        52 ~~~Y~~~-~~~~lr~~la~~~------~~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~~  123 (356)
T 1fg7_A           52 LNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE  123 (356)
T ss_dssp             TTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             hccCCCc-cHHHHHHHHHHHh------CCChHHEEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCCE
Confidence            5679876 4899999999998      4678899999999999999999998 499 99999999999999999999999


Q ss_pred             EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 018147          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       239 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~  318 (360)
                      ++.+++++  +|.+|+++++++++       ++++|++++||||||.+++.+++++|+++|+ +|+++|+||+|.++...
T Consensus       124 ~~~v~~~~--~~~~d~~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~  193 (356)
T 1fg7_A          124 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ  193 (356)
T ss_dssp             EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred             EEEeeCCC--CCCCCHHHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC
Confidence            99998874  47899999988774       4889999999999999999999999999999 99999999999996521


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                           .++..+..    .++  ++++++||||.|+ +|+|+||
T Consensus       194 -----~~~~~~~~----~~~--~~i~~~s~sK~~g~~G~r~G~  225 (356)
T 1fg7_A          194 -----ASLAGWLA----EYP--HLAILRTLSKAFALAGLRCGF  225 (356)
T ss_dssp             -----GCSGGGTT----TCT--TEEEEEESSSTTCCGGGCCEE
T ss_pred             -----CcHHHHHh----hCC--CEEEEecchHhhcCchhhhEE
Confidence                 12222211    122  4799999999998 8999998

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=2.5e-29  Score=244.70  Aligned_cols=217  Identities=18%  Similarity=0.233  Sum_probs=158.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcCcHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~  175 (360)
                      +++|+++.|+|+..   |.                        ..+.+.+++.+.+.+... .....|++..|.++||++
T Consensus        31 ~~~i~l~~g~p~~~---~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~   83 (417)
T 3g7q_A           31 PGAIMLGGGNPAHI---PA------------------------MQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNA   83 (417)
T ss_dssp             -CCEECSCCCCCCC---HH------------------------HHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHH
T ss_pred             CCceEecCcCCCCC---Ch------------------------HHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHH
Confidence            47899999988851   10                        012334444444443210 013479999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC-----EEEEc-CCCchHHHHHHHHc------CCeEEEee
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-----GILCP-IPQYPLYSASIALH------GGTLVPYY  243 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd-----~Vlv~-~P~y~~~~~~~~~~------g~~~~~v~  243 (360)
                      +|+++.+++|+++++++|++|+|+++|+.++++.++. +||     +|+++ .|+|+.|...+...      +..+..++
T Consensus        84 ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (417)
T 3g7q_A           84 LAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG-RRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP  162 (417)
T ss_dssp             HHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB-C----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEG
T ss_pred             HHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC-CCccCCcceEEEeCCCccccchhhccchhhhccccCcccccC
Confidence            9999999999999999999999999999999999984 887     89997 99999998765432      23344443


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+. .+|.+|+++|+  +++      ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+....  .+
T Consensus       163 ~~~-~~~~~d~~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~--~~  231 (417)
T 3g7q_A          163 EGQ-FKYHVDFEHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI--IF  231 (417)
T ss_dssp             GGE-EEEECCGGGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC--BC
T ss_pred             Ccc-cccccCHHHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc--cc
Confidence            321 24678998887  433      78999999999999999999999999999999999999999998732111  11


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ....   +.    ..+ ++|++.||||...+|+|+||
T Consensus       232 ~~~~---~~----~~~-~~i~~~s~sK~~~~G~r~G~  260 (417)
T 3g7q_A          232 SEAR---PL----WNP-NIILCMSLSKLGLPGSRCGI  260 (417)
T ss_dssp             SCCC---CC----CCT-TEEEEEESGGGTCTTSCCEE
T ss_pred             cccc---cC----CCC-CEEEEEechhccCCCcceEE
Confidence            1110   11    123 58999999997677999998

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.95  E-value=1.9e-27  Score=224.73  Aligned_cols=180  Identities=17%  Similarity=0.200  Sum_probs=147.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ++|+.+.+++.+.+..     ...|+ ..|..++|+++|+++      ++++++|++|+|+++++..++..+   +||+|
T Consensus        29 ~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la~~~------~~~~~~i~~t~G~~~~l~~~~~~~---~gd~v   93 (337)
T 3p1t_A           29 AVEPRVQAAIAAAAAR-----INRYP-FDAEPRVMRKLAEHF------SCPEDNLMLVRGIDECFDRISAEF---SSMRF   93 (337)
T ss_dssp             CCCHHHHHHHHHHGGG-----TTSCC-TTHHHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHS---TTSEE
T ss_pred             CCCHHHHHHHHHhhhh-----hccCC-CCchHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHhc---CCCeE
Confidence            6788898888877654     45685 468999999999998      467889999999999999999887   79999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..|...++..|++++.+++++  +|.+|+++|+++  .      +++++++++|+||||.+++.+++   .++
T Consensus        94 l~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~l---~~l  160 (337)
T 3p1t_A           94 VTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--S------RDDCVVLANPSNPTGQALSAGEL---DQL  160 (337)
T ss_dssp             EEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--C------TTEEEEEESSCTTTCCCCCHHHH---HHH
T ss_pred             EEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--c------CCCEEEEeCCCCCCCCCCCHHHH---HHH
Confidence            9999999999999999999999999875  378999999875  1      67899999999999999995554   555


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++++ +|+||+|+++.+.+.  . .     ..    ..+ ++|+++||||.|+ +|+|+||
T Consensus       161 ~~~~~~-~ivDea~~~~~~~~~--~-~-----~~----~~~-~~i~~~S~sK~~g~~G~r~G~  209 (337)
T 3p1t_A          161 RQRAGK-LLIDETYVDYSSFRA--R-G-----LA----YGE-NELVFRSFSKSYGLAGLRLGA  209 (337)
T ss_dssp             HHHCSE-EEEECTTGGGSSCSS--S-C-----CC----CBT-TEEEEEESSSTTCCTTTCCEE
T ss_pred             HHhCCc-EEEECCChhhccccc--c-c-----cc----cCC-CEEEEeeCchhccCcchheEE
Confidence            667776 566999998665432  1 1     00    112 5799999999997 8999998

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.95  E-value=4.2e-27  Score=225.08  Aligned_cols=199  Identities=16%  Similarity=0.234  Sum_probs=159.1

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      +++|+++.|+|.+                             ..|+.+++++.+.+.+... ....|+.. +..++|+++
T Consensus        26 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~-~~~~lr~~l   74 (360)
T 3hdo_A           26 ASWIKLNTNENPY-----------------------------PPSPEVVKAILEELGPDGA-ALRIYPSA-SSQKLREVA   74 (360)
T ss_dssp             TTSEECSSCCCSS-----------------------------CCCHHHHHHHHHHHTTTCG-GGGSCCCS-SCHHHHHHH
T ss_pred             cceeeccCCCCCC-----------------------------CCCHHHHHHHHHHHhcccc-hhhcCCCC-chHHHHHHH
Confidence            4789999988876                             5688999999888876321 24567665 579999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+++      ++++++|++|+|+++++..++.+++. +||+|+++.|+|..+...++..|++++.++++++  |.+  ++
T Consensus        75 a~~~------g~~~~~i~~t~g~~~al~~~~~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--~~~--~~  143 (360)
T 3hdo_A           75 GELY------GFDPSWIIMANGSDEVLNNLIRAFAA-EGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD--FRI--AG  143 (360)
T ss_dssp             HHHH------TCCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT--SSB--TT
T ss_pred             HHHh------CcCcceEEEcCCHHHHHHHHHHHHhC-CCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC--CCH--HH
Confidence            9998      36789999999999999999999984 9999999999999999999999999999998654  455  44


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +++.+        +++++++++|+||||.+++.   ++|.++|+++|+++|+||+|.++  .+. ...++   ...    
T Consensus       144 l~~~~--------~~~~v~i~~p~nptG~~~~~---~~l~~l~~~~~~~li~De~~~~~--~~~-~~~~~---~~~----  202 (360)
T 3hdo_A          144 FPERY--------EGKVFFLTTPNAPLGPSFPL---EYIDELARRCAGMLVLDETYAEF--AES-NALEL---VRR----  202 (360)
T ss_dssp             CCSSB--------CSSEEEEESSCTTTCCCCCH---HHHHHHHHHBSSEEEEECTTGGG--SSC-CCTHH---HHH----
T ss_pred             HHhhc--------CCCEEEEeCCCCCCCCCcCH---HHHHHHHHHCCCEEEEECChHhh--CCc-chhHH---hcc----
Confidence            43221        46799999999999999995   55666778899999999999995  332 12222   221    


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       .+ +++++.|+||.|+ +|+|+||
T Consensus       203 -~~-~~i~~~s~sK~~g~~G~r~G~  225 (360)
T 3hdo_A          203 -HE-NVVVTRTLSKSYSLAGMRIGL  225 (360)
T ss_dssp             -CS-SEEEEEESTTTTSCTTSCCEE
T ss_pred             -CC-CEEEEecchHhhcCCccceee
Confidence             12 5799999999996 7999998

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.95  E-value=2.1e-27  Score=226.09  Aligned_cols=179  Identities=17%  Similarity=0.191  Sum_probs=148.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+..     ...|++..+ .++|+++|+++      ++++++|++|+|+++++..+++.+.   ||+|
T Consensus        28 ~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~g~~~al~~~~~~l~---gd~V   92 (350)
T 3fkd_A           28 GDKDHLEKHLVENLNC-----IRHYPEPDA-GTLRQMLAKRN------SVDNNAILVTNGPTAAFYQIAQAFR---GSRS   92 (350)
T ss_dssp             SCCHHHHHHHHHTGGG-----GGSCCCTTC-HHHHHHHHHHT------TCCGGGEEEESHHHHHHHHHHHHTT---TCEE
T ss_pred             CCCHHHHHHHHHhHhH-----HhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHHHHHHHHHC---CCEE
Confidence            5688898888776632     567888876 89999999987      4678999999999999999999885   8999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeec-CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      +++.|+|..+...++..|++++.+++ ++++++  ++        +      ++++|++++|+||||.+++.+++.+|++
T Consensus        93 i~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~  156 (350)
T 3fkd_A           93 LIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA--DF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLN  156 (350)
T ss_dssp             EEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS--CC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEeCCCcHHHHHHHHHcCCeEEEEecCCccccC--cc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999 654433  33        2      7999999999999999999999888888


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++  ++|+||+|.++.+++.  ...  ....    . .+ ++|++.||||.|+ +|+|+||
T Consensus       157 ~~~~~--~li~Dea~~~~~~~~~--~~~--~~~~----~-~~-~~i~~~S~sK~~~~~G~r~G~  208 (350)
T 3fkd_A          157 DHPDT--TFVLDQSYVSFTTEEV--IRP--ADIK----G-RK-NLVMVYSFSHAYGIPGLRIGY  208 (350)
T ss_dssp             HCTTS--EEEEECTTTTSCSSCC--CCG--GGGT----T-CS-SEEEEEESHHHHSCGGGCCEE
T ss_pred             hCCCC--EEEEECchhhhccCcc--hhh--HHhh----c-CC-CEEEEecCchhccCcchheEe
Confidence            88765  9999999999887654  211  1111    1 22 5799999999998 8999998

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.94  E-value=4e-27  Score=223.18  Aligned_cols=181  Identities=20%  Similarity=0.295  Sum_probs=147.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ..|+.+++++.+.+...   ....|+.. |..++|+++|+++.++   .+++++|++|+|+++++..+++.+    ||+|
T Consensus        32 ~~~~~v~~a~~~~~~~~---~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~----gd~V  100 (335)
T 1uu1_A           32 PFPEDLVDEVFRRLNSD---ALRIYYDS-PDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLMF----DRSV  100 (335)
T ss_dssp             CCCHHHHHHHHHTCCGG---GGGSCCCS-SCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHHS----SEEE
T ss_pred             CCCHHHHHHHHHHhhhh---hhhcCCCC-chHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHHh----CCcE
Confidence            46888998888766322   25568654 6999999999999543   367889999999999999999987    7999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++ |+|+.|...++..|++++.+++++  +|.+|+++|     +      ++++|++++||||||.+++.+++++|+++
T Consensus       101 l~~-p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~  166 (335)
T 1uu1_A          101 FFP-PTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKT  166 (335)
T ss_dssp             ECS-SSCHHHHHHHHHHTCEEEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred             EEC-CCcHHHHHHHHHcCCeEEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            999 999999999999999999998864  367888777     2      68999999999999999998888888887


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |   | ++|+||+|.++.+.   +..   .....     .+ +++++.||||.|+ +|+|+||
T Consensus       167 ~---~-~li~De~~~~~~~~---~~~---~~~~~-----~~-~~i~~~s~sK~~g~~G~r~G~  213 (335)
T 1uu1_A          167 G---A-FVALDEAYYEFHGE---SYV---DFLKK-----YE-NLAVIRTFSKAFSLAAQRVGY  213 (335)
T ss_dssp             T---C-EEEEECTTHHHHCC---CCG---GGGGT-----CS-SEEEEEESTTTTTCGGGCCEE
T ss_pred             C---C-EEEEECcchhhcch---hHH---HHhhh-----CC-CEEEEecchhhcCCcccCeEE
Confidence            7   7 89999999986542   121   21111     12 4799999999998 8999998

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.94  E-value=6.3e-28  Score=234.30  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=131.2

Q ss_pred             CCCCCCCCcCc-----HHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCC----EEEEcCCCchHH
Q 018147          159 ATGAYSHSQGI-----KGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSEND----GILCPIPQYPLY  228 (360)
Q Consensus       159 ~~~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd----~Vlv~~P~y~~~  228 (360)
                      ....|++..|.     ++||+++|+++. .+|+.+++ ++|++|+|+++++..++++++. +||    +|+++.|+|+.|
T Consensus        55 ~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-~Gd~~~~~Vlv~~P~y~~~  132 (391)
T 3bwn_A           55 LMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSS-LARSQPVSVVAAAPFYSTY  132 (391)
T ss_dssp             TCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH-TSSSSSEEEEECSSCCTHH
T ss_pred             hhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcC-CCCCCcceEEEcCCCchhH
Confidence            36789999998     999999999997 56888887 5899999999999999999985 999    999999999999


Q ss_pred             HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ...++..|++++.++++.+   +++        .+      ++++|++++||||||.+++     +|++.+.+++++||+
T Consensus       133 ~~~~~~~g~~~~~~~~d~~---~l~--------~~------~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~  190 (391)
T 3bwn_A          133 VEETTYVRSGMYKWEGDAW---GFD--------KK------GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIH  190 (391)
T ss_dssp             HHHHHTTCBTTEEEEEEST---TCC--------CC------SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEE
T ss_pred             HHHHHHcCCeEEEecCCHH---HcC--------CC------CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEE
Confidence            9999999999999988764   333        12      6899999999999999996     344422223399999


Q ss_pred             ccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       309 DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ||+|.+    +.  +.++..    .    .+ ++|+++||||.|+ +|+|+||
T Consensus       191 De~y~~----~~--~~~l~~----~----~~-~~i~~~S~SK~~g~~GlRiG~  228 (391)
T 3bwn_A          191 DFAYYW----PH--YTPITR----R----QD-HDIMLFTFSKITGHAGSRIGW  228 (391)
T ss_dssp             ECTTCS----TT--TSCCCC----C----BC-CSEEEEEHHHHHSCGGGCEEE
T ss_pred             eCCCCC----CC--CCcccc----C----CC-CeEEEEechhhcCCCccceEE
Confidence            999973    11  222211    1    22 5799999999996 7999998

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.92  E-value=2.1e-24  Score=208.85  Aligned_cols=201  Identities=11%  Similarity=0.052  Sum_probs=158.7

Q ss_pred             CccccCcc-C-C-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 018147          129 SILDRSET-Q-G-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM  205 (360)
Q Consensus       129 ~~l~~~~~-~-~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~  205 (360)
                      +++|++.+ + . ..|+.+.+++.+.+..... ....|.+..|..++++++++++.+.+|.    +++++|+|+++++..
T Consensus        44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~  118 (398)
T 3a2b_A           44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYGT-GCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLG  118 (398)
T ss_dssp             EEEECSCSCTTCGGGCHHHHHHHHHHHHHHCS-CCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred             eEEEeecccccCCCCCHHHHHHHHHHHHHcCC-CCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHH
Confidence            34555544 2 1 2578888988888766432 2456777788889999999999988773    589999999999999


Q ss_pred             HHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      ++++++ ++||.|+++.|+|+.+...++..|++++.+++       +|+++|++++++...  .++++|++++|+||||.
T Consensus       119 ~~~~~~-~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~  188 (398)
T 3a2b_A          119 PLSCLM-GRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGD  188 (398)
T ss_dssp             HHHHSS-CTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCC
T ss_pred             HHHHHh-CCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCC
Confidence            999998 49999999999999999999999999999875       478999998875211  15889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +++   +++|+++|+++|+++|+||+|..+.|+..  ..++.... ++.   ++ -.++++||||.|++
T Consensus       189 ~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~---~~-~di~~~s~sK~~~~  247 (398)
T 3a2b_A          189 IVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK--GAGTASHF-GLN---DD-VDLIMGTFSKSLAS  247 (398)
T ss_dssp             BCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHH-TCG---GG-CSEEEEESSSTTCS
T ss_pred             ccC---HHHHHHHHHHcCcEEEEECCCcccccCCC--CCchHhhc-CCC---cC-CeEEEecccccccC
Confidence            998   89999999999999999999999877532  23443321 111   11 14999999999984

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.92  E-value=1.5e-24  Score=207.34  Aligned_cols=192  Identities=14%  Similarity=0.096  Sum_probs=148.7

Q ss_pred             CCCHHHHHHHHHHHHcCCC-----CCCCCCCCCcCcHHHHHH-HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          139 LFSADSIERAWQILDQIPG-----RATGAYSHSQGIKGLRDT-IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~-----~~~~~Y~~~~G~~~lr~~-ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      ..|+.+++++.+.+.....     .....|.+..+..++++. +++++    |  .+  +|++|+|+++|+..++.+++ 
T Consensus        20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~--~~--~v~~~~g~t~a~~~~~~~~~-   90 (371)
T 2e7j_A           20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----G--CD--VARVTNGAREAKFAVMHSLA-   90 (371)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----T--SS--EEEEESSHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----C--CC--EEEEeCChHHHHHHHHHHHh-
Confidence            5688899888877654310     012345567789999999 99987    3  23  99999999999999999998 


Q ss_pred             CCCCEEEEcCCCchHHHHHHHHcCCeEEEee--cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          213 SENDGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      .+||+|+++.|+|+.+...++..|++++.++  +++  ++.+|+++|++++++...+ .++++|++++|+||||.+++  
T Consensus        91 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~--  165 (371)
T 2e7j_A           91 KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD--  165 (371)
T ss_dssp             CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC--
T ss_pred             CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC--
Confidence            4999999999999999999999999999999  654  3689999999999753211 27899999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +++|.++|+++|+++|+||+|..+.+.     .++...    +   .+   +++.|+||.++++.|+||
T Consensus       166 -~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~----~---~d---i~~~s~sK~~~~~~~~G~  219 (371)
T 2e7j_A          166 -VKKIAKVCSEYDVPLLVNGAYAIGRMP-----VSLKEI----G---AD---FIVGSGHKSMAASGPIGV  219 (371)
T ss_dssp             -HHHHHHHHHTTTCCEEEECTTTBTTBC-----CCHHHH----T---CS---EEEEEHHHHSSCCSSCEE
T ss_pred             -HHHHHHHHHHcCCeEEEECccccCCCC-----CChhhc----C---CC---EEEecCCcCCCCCCCcEE
Confidence             799999999999999999999985432     222221    1   23   889999999888779997

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.92  E-value=2e-26  Score=226.41  Aligned_cols=179  Identities=17%  Similarity=0.134  Sum_probs=139.2

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCc-C---cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH------
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQ-G---IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL------  210 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~-G---~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l------  210 (360)
                      |+.+.+++.+.+..... ....|++.. |   .++||+++|+|+.++++..+++++|++|+|+++++.+++.+|      
T Consensus        71 ~~~v~~a~~~~l~~~~~-~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~  149 (427)
T 2hox_A           71 EYWKQHKEASAVLVSPW-HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTA  149 (427)
T ss_dssp             HHHTTSHHHHCEEECTT-TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTT
T ss_pred             CHHHHHhHHhhhhcCCc-ccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhcccc
Confidence            34455555555532221 233599988 9   999999999999988777788999999999999999999999      


Q ss_pred             --ccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          211 --IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       211 --~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                        + ++||+|+++.|+|+.|...++..|++++.        |.+|++.|++++++      ++|+|+++|||||||.+++
T Consensus       150 ~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~  214 (427)
T 2hox_A          150 TPD-APESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH  214 (427)
T ss_dssp             CTT-SCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC
T ss_pred             ccC-CCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcC------CceEEEEcCCCCCcccccH
Confidence              7 49999999999999999999999988764        35667778777655      6899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       +.+       +  ++..|.|++|.    ++   +.++..+.       .+ ++|+++||||.|+ +|+|+||
T Consensus       215 -~~l-------~--~~~~i~d~~~~----~~---~~s~~~~~-------~~-~~i~~~S~SK~~g~~G~RiG~  262 (427)
T 2hox_A          215 -AVI-------K--GCKSIYDMVYY----WP---HYTPIKYK-------AD-EDILLFTMSKFTGHSGSRFGW  262 (427)
T ss_dssp             -CSS-------T--TCEEEEECTTC----ST---TTSCCCSC-------BC-CSEEEEEHHHHTSCGGGCCEE
T ss_pred             -HHH-------c--CCCEEEeeccc----CC---CCCccccC-------CC-ceEEEEeChhcCCCCCceEEE
Confidence             422       2  56677777664    22   33332221       12 5799999999997 7999998

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.91  E-value=4.6e-24  Score=208.02  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=133.5

Q ss_pred             CCCCCCCcCcH---HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HH
Q 018147          160 TGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SI  232 (360)
Q Consensus       160 ~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~  232 (360)
                      .+.|+. .|.+   ++++++++++    |  .  +++++++|+++|+..++.+++. +||+|+++.|.|+.+..    .+
T Consensus        53 ~~~Y~~-~~~~~~~~l~~~ia~~~----g--~--~~~i~~~~g~~ai~~~~~~l~~-~gd~Vl~~~~~y~~~~~~~~~~~  122 (404)
T 1e5e_A           53 GYIYTR-LGNPTVSNLEGKIAFLE----K--T--EACVATSSGMGAIAATVLTILK-AGDHLISDECLYGCTHALFEHAL  122 (404)
T ss_dssp             SCCBTT-TCCHHHHHHHHHHHHHH----T--C--SEEEEESSHHHHHHHHHHHHCC-TTCEEEEESCCCHHHHHHHHTHH
T ss_pred             CccccC-CcChHHHHHHHHHHHHh----C--C--CcEEEeCChHHHHHHHHHHHhC-CCCEEEEeCCCchhHHHHHHHHH
Confidence            556877 5666   8999999987    3  2  3788888889999999999984 99999999999999888    78


Q ss_pred             HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH-cCCEEEEccC
Q 018147          233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEV  311 (360)
Q Consensus       233 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~-~~i~lI~Dea  311 (360)
                      +..|++++.++++       |+++|++++++      ++++|++++|+||||.+++   +++|+++|++ +|+++|+||+
T Consensus       123 ~~~g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~  186 (404)
T 1e5e_A          123 TKFGIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNT  186 (404)
T ss_dssp             HHTTCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECT
T ss_pred             HHcCCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECC
Confidence            8899999999865       67888888865      7999999999999999997   9999999999 9999999999


Q ss_pred             CCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       312 Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                      |..+.+..     ++ .    ++      ..|++.|+||.|++ |.|+ ||
T Consensus       187 ~~~~~~~~-----~~-~----~~------~di~~~S~sK~~~~~g~ri~G~  221 (404)
T 1e5e_A          187 FCSPMITN-----PV-D----FG------VDVVVHSATKYINGHTDVVAGL  221 (404)
T ss_dssp             TTCTTTCC-----GG-G----GT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             CchhhhCC-----cc-c----cC------CEEEEEcCccccCCCCCCeEEE
Confidence            99977641     11 1    11      35899999999874 9998 87

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.91  E-value=2.1e-24  Score=208.18  Aligned_cols=197  Identities=14%  Similarity=0.062  Sum_probs=156.8

Q ss_pred             CCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHH
Q 018147          127 HPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHM  205 (360)
Q Consensus       127 ~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~  205 (360)
                      .|..+.++.++...|+.+++++.+.+.       ..|++.  ..++++++++++.+.+|.  +++ +|++|+|+++|+..
T Consensus        32 ~~~~~l~~~~~~~~~~~v~~a~~~~~~-------~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~  100 (393)
T 1vjo_A           32 VPSRLLLGPGPSNAHPSVLQAMNVSPV-------GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEA  100 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHHSSCCC-------CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHH
T ss_pred             CccceeccCCCCCCCHHHHHHHhcccc-------cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHH
Confidence            344444455677788888877654322       145432  568889999999888775  567 89999999999999


Q ss_pred             HHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          206 MMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      ++.+++ ++||+|+++.|+|+.  |...++..|++++.++++++  +.+|+++|++++++.     ++++|++++|+|||
T Consensus       101 ~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~-----~~~~v~~~~~~npt  172 (393)
T 1vjo_A          101 TIANAV-EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETH-----RPAILALVHAETST  172 (393)
T ss_dssp             HHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTT
T ss_pred             HHHhcc-CCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHhhC-----CceEEEEeccCCCc
Confidence            999998 499999999999999  99999999999999998763  579999999999764     58899999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+++   +++|+++|+++|+++|+||+|..   +..  ...+    ...     + ..+++.|+||.++++.|+||
T Consensus       173 G~~~~---l~~i~~l~~~~~~~li~Dea~~~---g~~--~~~~----~~~-----~-~di~~~s~sK~l~~~~~~G~  231 (393)
T 1vjo_A          173 GARQP---LEGVGELCREFGTLLLVDTVTSL---GGV--PIFL----DAW-----G-VDLAYSCSQKGLGCSPGASP  231 (393)
T ss_dssp             TEECC---CTTHHHHHHHHTCEEEEECTTTT---TTS--CCCT----TTT-----T-CSEEECCSSSTTCSCSSCEE
T ss_pred             ceecc---HHHHHHHHHHcCCEEEEECCccc---cCc--CCcc----ccc-----C-ccEEEEcCcccccCCCceEE
Confidence            99998   88999999999999999999992   221  1111    111     1 24889999998877559987

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.91  E-value=2e-24  Score=207.57  Aligned_cols=191  Identities=19%  Similarity=0.150  Sum_probs=149.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCC---CCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccC
Q 018147          139 LFSADSIERAWQILDQIPGRAT---GAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRS  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~---~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~  213 (360)
                      ..|+.+++++.+.+........   ..|+. ..+..++|+++++++      ++++++|++|+|+++++..+++.+ + .
T Consensus        27 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~~~~-~   99 (390)
T 1elu_A           27 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITDNVTTGCDIVLWGLDW-H   99 (390)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEESSHHHHHHHHHHHSCC-C
T ss_pred             CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc------CCCHHHEEEeCChHHHHHHHHhCCCC-C
Confidence            3577888888887765310001   14544 367889999999987      356789999999999999999999 7 4


Q ss_pred             CCCEEEEcCCCchHHHHH----HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          214 ENDGILCPIPQYPLYSAS----IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      +||+|+++.|+|+.+...    ++..|++++.++++.+.++.+|+++|++++++      ++++|++++|+||||.+++ 
T Consensus       100 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~-  172 (390)
T 1elu_A          100 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP-  172 (390)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC-
T ss_pred             CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC-
Confidence            999999999999997654    46679999999987434578999999998865      7999999999999999999 


Q ss_pred             HHHHHHHHHHH----HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          290 ENQRAIVDFCK----KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~----~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +++|.++|+    ++|+++|+||+|.....     ...+    ...     + ..+++.|+||.+.|+.++||
T Consensus       173 --~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-----~~~~----~~~-----~-~d~~~~s~~K~~~~~~g~G~  230 (390)
T 1elu_A          173 --LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDF----SRL-----E-VDYYAFTGHKWFAGPAGVGG  230 (390)
T ss_dssp             --HHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCT----TTS-----C-CSEEEEESSSTTCCCTTCEE
T ss_pred             --HHHHHHHHhhhhhhcCcEEEEEcccccCCc-----CCCh----hhc-----C-CCEEEccccccccCCCceEE
Confidence              889999999    99999999999984211     1111    111     1 24889999997777778886

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.1e-23  Score=202.04  Aligned_cols=207  Identities=12%  Similarity=0.062  Sum_probs=158.3

Q ss_pred             HHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC
Q 018147          118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD  197 (360)
Q Consensus       118 ~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~  197 (360)
                      +|+.+...+...+++. .++...++.+++++.+.+.       ..|++.  ..++++++++++.+.+|.+ ++++|++|+
T Consensus        10 ~r~~f~~~~~~~~l~~-~~~~~~~~~v~~a~~~~~~-------~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~   78 (386)
T 2dr1_A           10 FKEVYEMVKPKYKLFT-AGPVACFPEVLEIMKVQMF-------SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPS   78 (386)
T ss_dssp             HHHHHHHHSCCSEECC-SSSCCCCHHHHHHTTSCCC-------CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESS
T ss_pred             HHHHHhhcCccceeec-CCCcCCcHHHHHHHhcccc-------cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeC
Confidence            3444443333333332 3355668877776543221       245432  4788999999998888865 467899999


Q ss_pred             ChHHHHHHHHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          198 GASPAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       198 Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      |+++|+..++.+++. +||+|+++.|+|+.  +...++..|++++.++++.  ++.+|+++|++++++    .+++++|+
T Consensus        79 g~t~a~~~~~~~l~~-~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~----~~~~~~v~  151 (386)
T 2dr1_A           79 SGTGIMEASIRNGVS-KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRK----NPDVEAVT  151 (386)
T ss_dssp             CHHHHHHHHHHHHSC-TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHH----CTTCCEEE
T ss_pred             ChHHHHHHHHHHhhc-CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhc----CCCCcEEE
Confidence            999999999999984 99999999999998  8899999999999999875  367999999999964    12689999


Q ss_pred             EecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       276 l~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      +++|+||||.+.+   +++|+++|+++|+++|+||+|..+.+.     .++    ...     + ..+++.|+||.++++
T Consensus       152 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~----~~~-----~-~di~~~s~sK~~~~~  213 (386)
T 2dr1_A          152 ITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-----IKF----DKW-----G-LDVVFSSSQKAFGVP  213 (386)
T ss_dssp             EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-----CCT----TTT-----T-CSEEEEETTSTTCCC
T ss_pred             EEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-----ccc----ccc-----C-CcEEEEeccccccCC
Confidence            9999999999988   899999999999999999999975442     111    111     1 358999999999865


Q ss_pred             ccccC
Q 018147          356 FFSKW  360 (360)
Q Consensus       356 ~RvGw  360 (360)
                      .++||
T Consensus       214 ~g~G~  218 (386)
T 2dr1_A          214 PGLAI  218 (386)
T ss_dssp             SSCEE
T ss_pred             CceEE
Confidence            55776

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.91  E-value=1.1e-23  Score=201.74  Aligned_cols=188  Identities=12%  Similarity=0.125  Sum_probs=148.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCCC----CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--
Q 018147          139 LFSADSIERAWQILDQIPGRA----TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--  212 (360)
                      ..|+.+++++.+.+.+.....    ...|....|..++++++++++      ++++++|++|+|+++++..+++++..  
T Consensus        12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~~~~~~   85 (384)
T 1eg5_A           12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTVAETF   85 (384)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEECCHHHHHHHHHHhhhhhc
Confidence            568999999988887531100    112444567788999999988      35678999999999999999999972  


Q ss_pred             -CCCCEEEEcCCCchHHHHHH---HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          213 -SENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       213 -~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                       ++||+|+++.|+|+.+...+   +..|++++.++++++  +.+|+++|++++++      ++++|++++|+||||.+++
T Consensus        86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~  157 (384)
T 1eg5_A           86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP  157 (384)
T ss_dssp             TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC
T ss_pred             cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC--CccCHHHHHHHhCC------CCeEEEEECCCCCcccccC
Confidence             38999999999999886665   678999999998753  67999999998875      7999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC--CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          289 EENQRAIVDFCKKEG--LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~--i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                         +++|.++|+++|  +++|+||+|.   |+..  ..++.    .+     + ..+++.|+||.+++ |  +||
T Consensus       158 ---~~~i~~l~~~~~~~~~li~Dea~~---~~~~--~~~~~----~~-----~-~di~~~s~sK~~g~~G--~G~  212 (384)
T 1eg5_A          158 ---VEDVTRIVKKKNKETLVHVDAVQT---IGKI--PFSLE----KL-----E-VDYASFSAHKFHGPKG--VGI  212 (384)
T ss_dssp             ---HHHHHHHHHHHCTTCEEEEECTTT---TTTS--CCCCT----TT-----C-CSEEEEEGGGGTSCTT--CEE
T ss_pred             ---HHHHHHHHHhcCCceEEEEEhhhh---cCCc--ccCch----hc-----C-CCEEEecHHHhcCCCc--eEE
Confidence               789999999999  9999999997   3221  11211    11     1 24889999998775 5  565

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.91  E-value=1.1e-23  Score=204.35  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=149.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCC--CcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHH--
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSH--SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL--  210 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga~~al~~~~~~l--  210 (360)
                      ..|+.+++++.+.+.+....   +...|++  ..+..++|+++++++      +. ++++|++|+|+++|+..++.++  
T Consensus        39 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~------~~~~~~~v~~~~g~t~a~~~~~~~~~~  112 (420)
T 1t3i_A           39 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI------NARSPREIVYTRNATEAINLVAYSWGM  112 (420)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT------TCSCGGGEEEESSHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc------CCCCCCeEEEcCChHHHHHHHHHHhhh
Confidence            35888999988888763210   1344654  467889999999987      23 5789999999999999999998  


Q ss_pred             --ccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          211 --IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       211 --~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                        + .+||+|+++.|+|+.    |...++..|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||
T Consensus       113 ~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG  183 (420)
T 1t3i_A          113 NNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QESFDLEHFKTLLSE------KTKLVTVVHISNTLG  183 (420)
T ss_dssp             HHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSSBCHHHHHHHCCT------TEEEEEEESBCTTTC
T ss_pred             ccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC--CCCcCHHHHHHhhCC------CceEEEEeCCccccc
Confidence              7 499999999999998    6777788999999999874  467999999999875      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      .+++   +++|.++|+++|+++|+|++|.....     ...+..    ++      ..+++.|+||.+++ |  +||
T Consensus       184 ~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~----~~------~di~~~s~sK~~~~~g--~G~  240 (420)
T 1t3i_A          184 CVNP---AEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQL----ID------CDWLVASGHKMCAPTG--IGF  240 (420)
T ss_dssp             BBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHH----HT------CSEEEEEGGGTTSCTT--CEE
T ss_pred             CcCC---HHHHHHHHHHcCCEEEEEhhhccCCc-----cCchhh----cC------CCEEEEehhhhcCCCc--eEE
Confidence            9999   89999999999999999999986432     112222    11      24889999997765 4  664

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.91  E-value=4.7e-23  Score=203.15  Aligned_cols=232  Identities=16%  Similarity=0.140  Sum_probs=167.1

Q ss_pred             cccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCcc--CCCCCHHHH
Q 018147           68 CEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSET--QGLFSADSI  145 (360)
Q Consensus        68 ~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~--~~~~p~~v~  145 (360)
                      ++.+....+..++.+++..+         .++++++.|++-                      +|+..+  +..+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~g---------~~~~~l~~~~~y----------------------lD~~~~~~~~~~~~~~~   61 (456)
T 2ez2_A           13 VETVSMIPRDERLKKMQEAG---------YNTFLLNSKDIY----------------------IDLLTDSGTNAMSDKQW   61 (456)
T ss_dssp             CCCCCCCCHHHHHHHHHHTT---------TCGGGSCGGGCS----------------------EECSCSSSCCCCCHHHH
T ss_pred             ecccCCCCHHHHHHHHHHCC---------CCcccCCcccce----------------------eeeccccCCccCCHHHH
Confidence            33343334556666665541         368888888762                      233322  334566666


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCc
Q 018147          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY  225 (360)
Q Consensus       146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y  225 (360)
                      +++.    .    ....|.+..|..+||+++++++    |    .+++++|+|+++|+..++.+++ ++||  +++.|+|
T Consensus        62 ~a~~----~----~~~~y~~~~~~~~l~~~la~~~----~----~~~~~~~~~gt~a~~~al~~l~-~~gd--i~~~~~~  122 (456)
T 2ez2_A           62 AGMM----M----GDEAYAGSENFYHLERTVQELF----G----FKHIVPTHQGRGAENLLSQLAI-KPGQ--YVAGNMY  122 (456)
T ss_dssp             HHHT----T----CCCCSSSCHHHHHHHHHHHHHH----C----CSEEEEESSHHHHHHHHHHHHC-CTTC--EEEESSC
T ss_pred             HHhh----c----chhhcccChhHHHHHHHHHHHh----C----CCcEEEeCCcHHHHHHHHHHhC-CCCC--Eeccccc
Confidence            5543    2    1346888888999999999998    2    3589999999999999999998 4999  7889999


Q ss_pred             -hHHHHHHHHcCCeEEEeecCCC----C----CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC-CcccCCCHHHHHHH
Q 018147          226 -PLYSASIALHGGTLVPYYLDEA----T----GWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQRAI  295 (360)
Q Consensus       226 -~~~~~~~~~~g~~~~~v~~~~~----~----~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N-PTG~~~~~~~l~~i  295 (360)
                       ..|...+...|++++.++++++    +    +|.+|+++|++++++..  ..++++|++++|+| |||.+++.+++++|
T Consensus       123 ~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i  200 (456)
T 2ez2_A          123 FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAV  200 (456)
T ss_dssp             CHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred             cchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHH
Confidence             8888999999999999988732    2    36899999999998631  01248999999999 99999999999999


Q ss_pred             HHHHHHcCCEEEEccCCCC----------CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          296 VDFCKKEGLVLLADEVYQE----------NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++|++||+++|+||+|..          +.|.+.    ++..+...++ .++|  ++++ |++|.++++ |.||
T Consensus       201 ~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~----~~~~~~~~~~-~~~d--~~~~-S~kk~~~~~-~gG~  266 (456)
T 2ez2_A          201 RELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK----SIAEIVHEMF-SYAD--GCTM-SGKKDCLVN-IGGF  266 (456)
T ss_dssp             HHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS----CHHHHHHHHH-TTCS--EEEE-ETTTTTCCS-SCEE
T ss_pred             HHHHHHcCCeEEEEccccccccccccccccccCCc----chhhhhhhhc-ccCC--EEEE-eCcccCCCC-ceeE
Confidence            9999999999999999986          445442    2211110111 1234  4555 788876656 7776

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.9e-23  Score=199.31  Aligned_cols=194  Identities=13%  Similarity=0.043  Sum_probs=155.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC----
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE----  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~----  214 (360)
                      ..++.+++++.+.+....    ..|....|..++++++++++.+.+|  +++++|++|+|+++|+..++..+.. +    
T Consensus        41 ~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~~-~~~~~  113 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNL----GDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIKN-IWREK  113 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCT----TSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHHH-HHHHH
T ss_pred             CCcHHHHHHHHHHHhhcC----CCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHHH-HHHhh
Confidence            456778888887776532    2222223567888888888888776  4678999999999999999999874 5    


Q ss_pred             ---------CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          215 ---------NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       215 ---------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                               ||+|+++.|+|+.+...++..|++++.++++++  +.+|+++|++++++.     ++++|++++|+||||.
T Consensus       114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~  186 (397)
T 3f9t_A          114 RRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED--YTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGT  186 (397)
T ss_dssp             HHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT--SSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCC
T ss_pred             hhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC--CcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCC
Confidence                     999999999999999999999999999998764  689999999999863     5889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC---------CCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK---------FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~---------~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      +.+   +++|.++|+++|+++|+||+|..+.+.....         ...+.    .      + ..+++.|++|.++++.
T Consensus       187 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~----~------~-~~~~~~s~~K~~~~~~  252 (397)
T 3f9t_A          187 IDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS----L------G-VDSITIDPHKMGHCPI  252 (397)
T ss_dssp             BCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG----G------T-CSEEECCTTTTTCCCS
T ss_pred             CCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc----c------c-CCeEEEccccccCCCC
Confidence            988   8889999999999999999998865532111         11110    0      1 2378899999998888


Q ss_pred             cccC
Q 018147          357 FSKW  360 (360)
Q Consensus       357 RvGw  360 (360)
                      |+||
T Consensus       253 ~~g~  256 (397)
T 3f9t_A          253 PSGG  256 (397)
T ss_dssp             SCEE
T ss_pred             CceE
Confidence            9986

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.90  E-value=4.8e-23  Score=198.72  Aligned_cols=206  Identities=13%  Similarity=0.071  Sum_probs=152.5

Q ss_pred             CCccccCcc-CCC--CCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          128 PSILDRSET-QGL--FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~-~~~--~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      .+++|++.+ +.+  .++.+.+++.+.+.+...   .....|+...+..++++.+++++    |  . +++|++++| ++
T Consensus        43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~--~-~~~i~~~sG-t~  114 (399)
T 3tqx_A           43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----G--T-DDTILYSSC-FD  114 (399)
T ss_dssp             EEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----T--C-SEEEEESCH-HH
T ss_pred             eeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----C--C-CcEEEECch-HH
Confidence            345566555 323  478899988888776321   01122334455788888888877    3  2 256666665 77


Q ss_pred             HHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       202 al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      ++..++..++ ++||.|+++.|+|+.+...++..|.+++.++.       .|+++|++.+++...++.++++|++++|+|
T Consensus       115 a~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~n  186 (399)
T 3tqx_A          115 ANGGLFETLL-GPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFS  186 (399)
T ss_dssp             HHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred             HHHHHHHHhc-CCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence            9999999998 49999999999999999999999999999875       367889999987655555799999999999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |||.+++   +++|+++|+++|+++|+||+|....++..  ..++.... ++.   ++ ..++++|+||.|+ |++.||
T Consensus       187 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~---~~-~di~~~s~sK~~~-g~~gG~  254 (399)
T 3tqx_A          187 MDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN--GRGTPEYC-GVA---DR-VDILTGTLGKALG-GASGGY  254 (399)
T ss_dssp             TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SCCHHHHH-TCT---TC-CSEEEEESSSSSC-SSCCEE
T ss_pred             CCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchHHhh-CCC---CC-CcEEEecchHhcc-cCceEE
Confidence            9999999   89999999999999999999974334332  33333332 111   12 3489999999998 567676

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.90  E-value=6.3e-23  Score=194.72  Aligned_cols=174  Identities=13%  Similarity=0.114  Sum_probs=143.2

Q ss_pred             CCCccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 018147          127 HPSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM  205 (360)
Q Consensus       127 ~p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~  205 (360)
                      .|.+++|+.+ ....|+.+++++.+.+.        .|....|..++++++++++.+.+|  +++++|++|+|+++++..
T Consensus        12 ~p~~i~l~~~~~~~~~~~v~~a~~~~~~--------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~   81 (359)
T 1svv_A           12 KPKPYSFVNDYSVGMHPKILDLMARDNM--------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLI   81 (359)
T ss_dssp             ---CEECSCSCSSCCCHHHHHHHHHHTT--------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHH
T ss_pred             CCeeEEecCCCcCCCCHHHHHHHHHHHh--------hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHH
Confidence            4555666555 33568888888877653        266666788899999999988887  567899999999999999


Q ss_pred             HHHHHccCCCCEEEEcCCCchHHHH--HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH-hcCCCccEEEEecCCCC
Q 018147          206 MMQLLIRSENDGILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK-AKGITVRALVVINPGNP  282 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~-~~g~~~k~iil~~P~NP  282 (360)
                      +++.++. +||+|+++.|+|+.+..  .++..|.+++.++.+   +|.+|+++|++++++.. +.+.++++|++++| ||
T Consensus        82 ~~~~~~~-~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~p  156 (359)
T 1svv_A           82 ACSLALR-PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TE  156 (359)
T ss_dssp             HHHHHCC-TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CT
T ss_pred             HHHHHhC-CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CC
Confidence            9999984 99999999999999987  478899999999975   46899999999998620 11223899999999 79


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      ||.+++.+++++|+++|+++|+++|+||+|.++
T Consensus       157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~  189 (359)
T 1svv_A          157 VGTQYTKQELEDISASCKEHGLYLFLDGARLAS  189 (359)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred             CceecCHHHHHHHHHHHHHhCCEEEEEccchhh
Confidence            999999999999999999999999999999554

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.89  E-value=8.8e-22  Score=191.36  Aligned_cols=196  Identities=12%  Similarity=0.041  Sum_probs=146.5

Q ss_pred             CCccccCccC---CCCCHHHHHHHHHHHHcCCCCCCCCC----CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          128 PSILDRSETQ---GLFSADSIERAWQILDQIPGRATGAY----SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       128 p~~l~~~~~~---~~~p~~v~~~~~~~l~~~~~~~~~~Y----~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ..++|++.+.   ...++.+++++.+.+.+.+. ....|    +......++++.+++++    |.  + +.+++ ++++
T Consensus        59 ~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~-~sGt  129 (409)
T 3kki_A           59 PDDIILQSNDYLALANHPLIKARLAKSLLEEQQ-SLFMSASFLQNDYDKPMIEKRLAKFT----GF--D-ECLLS-QSGW  129 (409)
T ss_dssp             TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCC-CCCSBGGGGCSTTTSCHHHHHHHHHH----TC--S-EEEEE-SCHH
T ss_pred             CceEEeeccCccCCcCCHHHHHHHHHHHHHcCC-CCCccccccCCcHHHHHHHHHHHHHh----CC--C-eEEEe-cchH
Confidence            4567776662   34588999999998887432 12223    32334566777777776    32  1 23444 5557


Q ss_pred             HHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       201 ~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +++..++.+++ ++||.|+++.|+|+.+...++..|++++.++.       .|+++|++++++.     ++++|++++|+
T Consensus       130 ~a~~~~l~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~-----~~~~vi~~~~~  196 (409)
T 3kki_A          130 NANVGLLQTIC-QPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH-----GPGIIVVDSIY  196 (409)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH-----CSCEEEEESBC
T ss_pred             HHHHHHHHHhc-CCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc-----CCeEEEECCCC
Confidence            99999999998 49999999999999999999999999988764       4799999999864     58999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      ||||.+.+   +++|+++|+++|++||+||+|....++..  ...+.... ++.   ++ ..|++.||||+|+++
T Consensus       197 nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~-~~~---~~-~di~~~s~sK~~~~~  261 (409)
T 3kki_A          197 STLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAEL-GLT---RE-VHFMTASLAKTFAYR  261 (409)
T ss_dssp             TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHH-TCG---GG-CSEEEEESSSTTCSS
T ss_pred             CCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhc-CCC---CC-CCEEEeecchhhCCC
Confidence            99999999   89999999999999999999998666432  22222221 111   12 248899999999875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=8.2e-23  Score=197.90  Aligned_cols=187  Identities=12%  Similarity=0.080  Sum_probs=143.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCC----CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---c
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---I  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l---~  211 (360)
                      ..|+.+++++.+.+..........|.    ...+..++|+++++++      ++++++|++|+|+++++..++.++   +
T Consensus        37 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~al~~~~~~l~~~~  110 (406)
T 3cai_A           37 LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV------NADPGGVVLGADRAVLLSLLAEASSSRA  110 (406)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESCHHHHHHHHHHHTGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCChHHHHHHHHHHHhhcc
Confidence            56889999998888763210112343    2345778888888887      356789999999999999999887   5


Q ss_pred             cCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 RSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                       .+||+|+++.|+|+.+...+..    .|++++.++++++ ++.+|+++|++++++      ++++|++++|+||||.++
T Consensus       111 -~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~  182 (406)
T 3cai_A          111 -GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISK------STRLVAVNSASGTLGGVT  182 (406)
T ss_dssp             -BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBC
T ss_pred             -CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccC
Confidence             4999999999999976554443    7999999998733 357899999998875      799999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      +   +++|.++|+++|+++|+|++|.....     ...+..    ++      ..+++.|+||.++++  +|
T Consensus       183 ~---l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~----~~------~d~~~~s~~K~~g~~--~G  234 (406)
T 3cai_A          183 D---LRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRE----TD------ADVVTVNAHAWGGPP--IG  234 (406)
T ss_dssp             C---CHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHH----HC------CSEEEEEGGGGTSCS--CE
T ss_pred             C---HHHHHHHHHHcCCEEEEEcccccCCC-----CCCchh----cC------CCEEEeehhhhcCCC--cC
Confidence            9   88999999999999999999974211     122222    21      237899999977654  77

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.89  E-value=4.6e-23  Score=198.82  Aligned_cols=196  Identities=10%  Similarity=0.069  Sum_probs=151.0

Q ss_pred             CCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--cCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHH
Q 018147          126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA  202 (360)
Q Consensus       126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~a  202 (360)
                      ..+..++++.++..+++.+++++.+.+.       ..|.+.  ....++|+++++++      +++++ +|++|+|++++
T Consensus        15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~------~~~~~~~v~~~~g~t~a   81 (396)
T 2ch1_A           15 IIPEKIMMGPGPSNCSKRVLTAMTNTVL-------SNFHAELFRTMDEVKDGLRYIF------QTENRATMCVSGSAHAG   81 (396)
T ss_dssp             CCCCCBCCSSSSCCCCHHHHHHTTSCCC-------CTTCHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHH
T ss_pred             CCCcceeecCCCCCCCHHHHHHhccccc-------cCCChhHHHHHHHHHHHHHHHh------CCCCCcEEEECCcHHHH
Confidence            3455677888888889988877644221       124331  23788899999887      34666 89999999999


Q ss_pred             HHHHHHHHccCCCCEEEEcCCCchHHH--HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          203 VHMMMQLLIRSENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       203 l~~~~~~l~~~~gd~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +..++.+++. +||+|+++.|+|+.|.  ..++..|++++.+++++  ++.+|+++|++++++.     ++++|++++|+
T Consensus        82 l~~~~~~~~~-~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~  153 (396)
T 2ch1_A           82 MEAMLSNLLE-EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELH-----QPKCLFLTHGD  153 (396)
T ss_dssp             HHHHHHHHCC-TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEE
T ss_pred             HHHHHHHhcC-CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCC
Confidence            9999999984 9999999999999985  47788999999999875  3679999999999864     68999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ||||.+++   +++|+++|+++|+++|+||+|..   +..  ...+    ..++   .|   +++.|++|.+++..++||
T Consensus       154 nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~---g~~--~~~~----~~~~---~d---~~~~s~~K~~~~~~g~g~  215 (396)
T 2ch1_A          154 SSSGLLQP---LEGVGQICHQHDCLLIVDAVASL---CGV--PFYM----DKWE---ID---AVYTGAQKVLGAPPGITP  215 (396)
T ss_dssp             TTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTB--CCCT----TTTT---CC---EEECCCC-CCCCCSSCEE
T ss_pred             CCCceecC---HHHHHHHHHHcCCEEEEEccccc---cCC--ccch----hhcC---cC---EEEEcCCccccCCCCeEE
Confidence            99999999   88999999999999999999983   211  1111    1111   23   566899998876555564

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.89  E-value=1.6e-22  Score=195.08  Aligned_cols=187  Identities=11%  Similarity=0.075  Sum_probs=146.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCC-CC----CCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHH--
Q 018147          139 LFSADSIERAWQILDQIPGR-AT----GAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL--  210 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~-~~----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-~~~~I~~t~Ga~~al~~~~~~l--  210 (360)
                      ..|+.+++++.+.+.+.... ..    ..|.+..+..++|+++++++    |  . ++++|++|+|+++|+..++.++  
T Consensus        34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~~v~~~~g~t~a~~~~~~~~~~  107 (406)
T 1kmj_A           34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----N--ARSAEELVFVRGTTEGINLVANSWGN  107 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----T--CSCGGGEEEESSHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----C--CCCCCeEEEeCChhHHHHHHHHHhhh
Confidence            35788999998888764210 01    11335567888999999887    2  3 5789999999999999999999  


Q ss_pred             --ccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          211 --IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       211 --~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                        + ++||+|+++.|+|+.    |...++..|++++.++++++  +.+|+++|++++++      ++++|++++|+||||
T Consensus       108 ~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~nptG  178 (406)
T 1kmj_A          108 SNV-RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPTLFDE------KTRLLAITHVSNVLG  178 (406)
T ss_dssp             HHC-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--SCBCGGGHHHHCCT------TEEEEEEESBCTTTC
T ss_pred             hcC-CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC--CCcCHHHHHHHhcc------CCeEEEEeCCCcccc
Confidence              7 499999999999864    45567778999999998753  67899999998875      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      .+++   +++|+++|+++|+++|+||+|.....     ...+..    .+      ..+++.|+||.|++ |  +||
T Consensus       179 ~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~~----~~------~d~~~~s~~K~~g~~G--~G~  235 (406)
T 1kmj_A          179 TENP---LAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQA----LD------CDFYVFSGHKLYGPTG--IGI  235 (406)
T ss_dssp             CBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHH----HT------CSEEEEEGGGTTSCTT--CEE
T ss_pred             CcCC---HHHHHHHHHHcCCEEEEEchhhcCCC-----CCcccc----cC------CCEEEEEchhccCCCC--cEE
Confidence            9999   89999999999999999999986321     112222    21      24889999999865 4  665

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.89  E-value=1.3e-22  Score=196.22  Aligned_cols=205  Identities=13%  Similarity=0.073  Sum_probs=151.6

Q ss_pred             CCCccccCcc-CCC--CCHHHHHHHHHHHHcCCCC-CCCCCC--CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          127 HPSILDRSET-QGL--FSADSIERAWQILDQIPGR-ATGAYS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       127 ~p~~l~~~~~-~~~--~p~~v~~~~~~~l~~~~~~-~~~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ...++|++.+ +.+  .|+.+++++.+.+...+.. ....|.  ...+..++|+++++++    |  ++ ++|++++| +
T Consensus        44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-s  115 (401)
T 1fc4_A           44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G--ME-DAILYSSC-F  115 (401)
T ss_dssp             SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T--CS-EEEEESCH-H
T ss_pred             CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----C--CC-cEEEeCCh-H
Confidence            4557787776 444  3889999998887763210 111232  2566889999999988    3  33 56666665 6


Q ss_pred             HHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       201 ~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      +++..++++++ ++||.|+++.|+|+.+...++..|++++.++.       .|+++|++.+++...++.++++|++++|+
T Consensus       116 ~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~  187 (401)
T 1fc4_A          116 DANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVF  187 (401)
T ss_dssp             HHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred             HHHHHHHHHHc-CCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            78988999998 49999999999999988889999999998862       47899999987654434468899999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCcc-CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVY-VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~-~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      ||||.+++   +++|.++|+++|+++|+||+|. ++.+ .+. .   +.... ++.   ++ ..|++.||||.|+|+. .
T Consensus       188 nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~-~---~~~~~-~~~---~~-~di~~~s~sK~~~~~~-g  254 (401)
T 1fc4_A          188 SMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR-G---SHEYC-DVM---GR-VDIITGTLGKALGGAS-G  254 (401)
T ss_dssp             TTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-C---HHHHT-TCT---TC-CSEEEEESSSTTCSSS-C
T ss_pred             CCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCC-c---cHHHc-CCC---cC-CcEEEecchhhccCCC-C
Confidence            99999999   8999999999999999999996 7654 232 1   11111 111   22 3589999999995543 3


Q ss_pred             cC
Q 018147          359 KW  360 (360)
Q Consensus       359 Gw  360 (360)
                      ||
T Consensus       255 G~  256 (401)
T 1fc4_A          255 GY  256 (401)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.88  E-value=4.3e-22  Score=190.13  Aligned_cols=191  Identities=12%  Similarity=0.036  Sum_probs=143.0

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc----cC
Q 018147          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI----RS  213 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~----~~  213 (360)
                      ...|+.+++++.+.+.+........|....+..++.+.+.+++.+.+|  +++++|++|+|+++++..++++++    . 
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~~~a~~~~~~~~~~~~~~-   86 (382)
T 4hvk_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN--GGGGTVVFTSGATEANNLAIIGYAMRNAR-   86 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEEESSHHHHHHHHHHHHHHHHGG-
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC--CCcCeEEEECCchHHHHHHHHHhhhhhcC-
Confidence            356888999998888763221111233223344555555555555555  467899999999999999999987    5 


Q ss_pred             CCCEEEEcCCCchHHHHHHHH---cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          214 ENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      +||+|+++.+.|+.+...+..   .|++++.++++++  +.+|+++|++++++      ++++|++++|+||||.+.+  
T Consensus        87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~--  156 (382)
T 4hvk_A           87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY--GEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP--  156 (382)
T ss_dssp             GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT--SCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC--
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC--CCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC--
Confidence            999999999999998776555   5999999998754  58999999999876      7899999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                       +++|+++|+++|+ +|+|++|.....     ...+..    .+      ..+++.|+||.+++ |+++
T Consensus       157 -~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~----~~------~d~~~~s~~K~~g~~g~g~  208 (382)
T 4hvk_A          157 -VEEISEVLAGKAA-LHIDATASVGQI-----EVDVEK----IG------ADMLTISSNDIYGPKGVGA  208 (382)
T ss_dssp             -HHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHH----HT------CSEEEEESGGGTSCTTCEE
T ss_pred             -HHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchh----cC------CCEEEEeHHHhcCCCceEE
Confidence             8899999999999 999999874211     112221    11      23889999997654 4443

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.88  E-value=2.1e-22  Score=196.92  Aligned_cols=189  Identities=14%  Similarity=0.134  Sum_probs=129.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCc----CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQ----GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--  212 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--  212 (360)
                      ..|+.+++++.+.+..........|....    ...++|+++++++    |  +++++|++|+|+++++..++..+++  
T Consensus        29 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~~~  102 (432)
T 3a9z_A           29 PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGTESNNLVIHSTVRCF  102 (432)
T ss_dssp             CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChHHHHHHHHHHHHhhh
Confidence            35888999998887653110112232211    2357888888876    3  5678999999999999999998851  


Q ss_pred             -----CCCCEEEEcCCCchHH-----------------HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          213 -----SENDGILCPIPQYPLY-----------------SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       213 -----~~gd~Vlv~~P~y~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                           .+||+|+++.|+|..|                 ....+..|++++.++++++ ++.+|+++|++++++      +
T Consensus       103 ~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~i~~------~  175 (432)
T 3a9z_A          103 HEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDILAAVRP------T  175 (432)
T ss_dssp             HHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHHHHTCCT------T
T ss_pred             hhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHHHHhccC------C
Confidence                 2899999999999765                 3344557999999998753 347899999998875      7


Q ss_pred             ccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC----------CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCc
Q 018147          271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEG----------LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI  340 (360)
Q Consensus       271 ~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~----------i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~  340 (360)
                      +++|++++|+||||.+++   +++|.++|++++          +++|+||+|....     ...++..    +.   .| 
T Consensus       176 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-----~~~~~~~----~~---~d-  239 (432)
T 3a9z_A          176 TCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-----RRVDVED----LG---VD-  239 (432)
T ss_dssp             EEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-----SCCCHHH----HC---CS-
T ss_pred             ceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC-----cccChhh----cC---CC-
Confidence            999999999999999999   677889999999          9999999997632     1223322    21   34 


Q ss_pred             eEEEEeccCcCccccccccC
Q 018147          341 SLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       341 ~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +++.|+||.++  .|+||
T Consensus       240 --~~~~s~~K~~g--~~~G~  255 (432)
T 3a9z_A          240 --FLTIVGHKFYG--PRIGA  255 (432)
T ss_dssp             --EEEEEGGGTTC--CSCEE
T ss_pred             --EEEEehhHhcC--CcceE
Confidence              56899999763  66886

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.88  E-value=6.1e-22  Score=189.66  Aligned_cols=187  Identities=12%  Similarity=0.057  Sum_probs=142.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCC----cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc---
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~---  211 (360)
                      ..|+.+++++.+.+.+........|...    .+..++++.+++++    |  +++++|++|+|+++|+..++.++.   
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~l~~~~   84 (382)
T 4eb5_A           11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV----N--GGGGTVVFTSGATEANNLAIIGYAMRN   84 (382)
T ss_dssp             CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence            5789999999888875321111124432    34566777777766    4  467899999999999999999987   


Q ss_pred             -cCCCCEEEEcCCCchHHHHHHHH---cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 -RSENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 -~~~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                       . +||+|+++.|+|+.+...+..   .|++++.++++++  +.+|+++|++++++      ++++|++++|+||||.++
T Consensus        85 ~~-~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~  155 (382)
T 4eb5_A           85 AR-KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY--GEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQ  155 (382)
T ss_dssp             GG-GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT--SCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBC
T ss_pred             cC-CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC--CccCHHHHHHHhcC------CCeEEEEeccCCCccccC
Confidence             5 899999999999988777654   6999999998753  57999999998875      789999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   +++|+++|+++|++ |+|++|..   +..  ..++..    ++      ..+++.|+||.+++ ..+||
T Consensus       156 ~---l~~i~~l~~~~~~~-i~D~a~~~---g~~--~~~~~~----~~------~di~~~s~sK~~g~-~g~G~  208 (382)
T 4eb5_A          156 P---VEEISEVLAGKAAL-HIDATASV---GQI--EVDVEK----IG------ADMLTISSNDIYGP-KGVGA  208 (382)
T ss_dssp             C---HHHHHHHHTTSSEE-EEECTTTB---TTB--CCCHHH----HT------CSEEEEETGGGTCC-SSCEE
T ss_pred             C---HHHHHHHHHHCCCE-EEEcchhc---CCc--ccCccc----cC------CCEEEeehHHhcCC-CceEE
Confidence            9   78999999999999 99999983   211  122222    11      23889999997654 12554

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.88  E-value=2e-22  Score=194.12  Aligned_cols=188  Identities=11%  Similarity=-0.028  Sum_probs=141.0

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      +...|+.+++++.+.+..     ...|....+..++|+.+++++    |  +++++|++|+|+++++..++++++ .+||
T Consensus        17 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~a~~~~~~~~~-~~gd   84 (392)
T 2z9v_A           17 PVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAM----R--LSNKPVILHGEPVLGLEAAAASLI-SPDD   84 (392)
T ss_dssp             CCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHT----T--CSSCCEEESSCTHHHHHHHHHHHC-CTTC
T ss_pred             CcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCCchHHHHHHHHHhc-CCCC
Confidence            345688888776554322     111222345677788887776    4  457899999999999999999998 4999


Q ss_pred             EEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHH
Q 018147          217 GILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       217 ~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      +|+++.|+|+.+  ...++..|++++.++++++  +.+|+++|++++++    .+++++|++++|+||||.+++   +++
T Consensus        85 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~  155 (392)
T 2z9v_A           85 VVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDA  155 (392)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHH
T ss_pred             EEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHH
Confidence            999999999875  3445668999999998764  36899999999964    126899999999999999998   889


Q ss_pred             HHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.++|+++|+++|+|++|.....     ...+.    .++   .   .+++.|+||.++|...+||
T Consensus       156 i~~l~~~~~~~li~D~a~~~g~~-----~~~~~----~~~---~---d~~~~s~sK~~~~~~g~G~  206 (392)
T 2z9v_A          156 IGALVSAHGAYLIVDAVSSFGGM-----KTHPE----DCK---A---DIYVTGPNKCLGAPPGLTM  206 (392)
T ss_dssp             HHHHHHHTTCEEEEECTTTBTTB-----SCCGG----GGT---C---SEEEECSSSTTCCCSCCEE
T ss_pred             HHHHHHHcCCeEEEEcccccCCc-----ccccc----ccc---c---eEEEecCcccccCCCceeE
Confidence            99999999999999999974211     11221    111   2   3788999998776555565

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.88  E-value=1.1e-22  Score=194.86  Aligned_cols=193  Identities=9%  Similarity=-0.008  Sum_probs=143.4

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      .++.++..+|+.+++++.+.+..     ...+.......++++.+++++    |.+.++++|++|+|+++++. ++..++
T Consensus         5 ~~~~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~-~~~~~~   74 (384)
T 3zrp_A            5 LLHVGPTTIKEDVLVAGLENNVG-----FTSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAME-SVTSLL   74 (384)
T ss_dssp             -CCSSCSCCCHHHHHHTTCCSCC-----TTSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred             eccCCCCCCCHHHHHHhhccccc-----cccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence            34555667888888876543321     111111233455566666655    53333388999999999999 888888


Q ss_pred             cCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          212 RSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                       .+||+|+++.|+|..  +...++..|++++.++++.+  +.+|+++|++++++.     ++++|++++|+||||.+++ 
T Consensus        75 -~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~-  145 (384)
T 3zrp_A           75 -KPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG--DYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP-  145 (384)
T ss_dssp             -CTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT--CCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC-
T ss_pred             -CCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC--CCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc-
Confidence             499999999999965  66667788999999998764  478999999999873     6899999999999999999 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +++|.++|+++|+++|+|++|.......     .+    ...     + ..+++.|+||.++|+..+||
T Consensus       146 --l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~----~~~-----~-~d~~~~s~~K~~~~~~g~g~  199 (384)
T 3zrp_A          146 --VKDVINKIRKYVELIVVDGVSSVGAEEV-----KA----EEW-----N-VDVYLTASQKALGSAAGLGL  199 (384)
T ss_dssp             --HHHHHHHHGGGEEEEEEECTTTTTTSCC-----CT----TTT-----T-CSEEEEETTSTTCCCSSEEE
T ss_pred             --HHHHHHHHHhcCCEEEEECcccccCccc-----cc----ccc-----C-CCEEEecCcccccCCCceEE
Confidence              8899999999999999999987532211     11    111     1 24889999999987666775

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.88  E-value=2.7e-21  Score=185.99  Aligned_cols=196  Identities=13%  Similarity=0.068  Sum_probs=145.3

Q ss_pred             CCccccCccC--C-CCCHHHHHHHHHHHHcCCC-C--CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          128 PSILDRSETQ--G-LFSADSIERAWQILDQIPG-R--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~~--~-~~p~~v~~~~~~~l~~~~~-~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..++|++.+.  . ..++.+.+++.+.+..... .  ....|+...+..++|+++++++    |  ++ +.|++++| ++
T Consensus        39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-t~  110 (384)
T 1bs0_A           39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G--YS-RALLFISG-FA  110 (384)
T ss_dssp             EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T--CS-EEEEESCH-HH
T ss_pred             ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----C--CC-cEEEeCCc-HH
Confidence            3455665542  1 3578899998888766321 0  1222355677899999999988    3  32 55666666 89


Q ss_pred             HHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       202 al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      ++..++.+++ ++||.|+++.|+|+.+...++..|.+++.+|.       .|+++|++.+++.   ..+++++++++|+|
T Consensus       111 a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~---~~~~~~v~~~~~~n  179 (384)
T 1bs0_A          111 ANQAVIAAMM-AKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEGVFS  179 (384)
T ss_dssp             HHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEESBCT
T ss_pred             HHHHHHHHhC-CCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhc---CCCCeEEEEeCCCC
Confidence            9999999998 49999999999999999999999999999873       4789999888641   11367888889999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      |||.+++   +++|+++|+++|+++|+||+|..+.++..  ..++...   ++ ..+|   ++++||||.+++
T Consensus       180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~---~~-~~~d---i~~~s~sK~~~~  240 (384)
T 1bs0_A          180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ--GRGSCWL---QK-VKPE---LLVVTFGKGFGV  240 (384)
T ss_dssp             TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG--GCCHHHH---TT-CCCS---EEEEESSSTTSS
T ss_pred             CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC--CCchHHh---cC-CCCc---EEEeeccchhhc
Confidence            9999999   88999999999999999999988765421  1122221   11 1133   889999999875

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.88  E-value=2.1e-22  Score=196.45  Aligned_cols=210  Identities=14%  Similarity=0.116  Sum_probs=150.2

Q ss_pred             CccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      .++|++.+    +.+ .++.+++++.+.+..... ....|.+..+..+||+++++++.   | . .+++|++|+|+++|+
T Consensus        42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~  115 (426)
T 1sff_A           42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH-TCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAV  115 (426)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC-CCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHH
T ss_pred             EEEEcccChhhcccCCCCHHHHHHHHHHHHhCCC-ccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHH
Confidence            45565444    222 478899998888765432 12356777889999999999872   3 2 358999999999999


Q ss_pred             HHHHH---HHccCCCCEEEEcCCCchHHH-HHHHHcCCe-------------EEEeecCC---CCCcCCCHHHHHHHHHH
Q 018147          204 HMMMQ---LLIRSENDGILCPIPQYPLYS-ASIALHGGT-------------LVPYYLDE---ATGWGLETSEVKKQLEA  263 (360)
Q Consensus       204 ~~~~~---~l~~~~gd~Vlv~~P~y~~~~-~~~~~~g~~-------------~~~v~~~~---~~~~~~d~~~L~~~i~~  263 (360)
                      ..+++   .+. ++| .|++++|+|+.+. ..+...|.+             ++.++++.   +.++.+|+++|++++++
T Consensus       116 ~~~~~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~  193 (426)
T 1sff_A          116 ENAVKIARAAT-KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN  193 (426)
T ss_dssp             HHHHHHHHHHH-TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence            99988   666 366 8999999998654 455666643             66677653   12345789999999874


Q ss_pred             HHhcCCCccEEEEe-cCCCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCce
Q 018147          264 AKAKGITVRALVVI-NPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS  341 (360)
Q Consensus       264 ~~~~g~~~k~iil~-~P~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  341 (360)
                      .. .+.++++|+++ +++| || .+.+.+++++|.++|+++|++||+||+|.++.+.+.  ..++. .   . +..++  
T Consensus       194 ~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~-~---~-~~~~d--  262 (426)
T 1sff_A          194 DA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAME-Q---M-GVAPD--  262 (426)
T ss_dssp             TC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG-G---T-TSCCS--
T ss_pred             cc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--hhhhh-h---c-CCCCC--
Confidence            10 00157777764 5688 99 888999999999999999999999999999766553  22221 1   1 11133  


Q ss_pred             EEEEeccCcCccccccccC
Q 018147          342 LVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       342 ~i~~~S~SK~~~g~~RvGw  360 (360)
                         +.||||+|++|+|+||
T Consensus       263 ---i~s~sK~~~~GlriG~  278 (426)
T 1sff_A          263 ---LTTFAKSIAGGFPLAG  278 (426)
T ss_dssp             ---EEEECGGGGTSSCCEE
T ss_pred             ---EEEEcccccCCCceEE
Confidence               3499999999999997

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.88  E-value=8.7e-23  Score=193.43  Aligned_cols=187  Identities=12%  Similarity=0.051  Sum_probs=141.6

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      +..++..+|+.+++++.+.+..     ...|....+..++|+++++++    |  +++++|++|+|+++++..++++++ 
T Consensus         5 ~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~-   72 (352)
T 1iug_A            5 LTPGPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLF-   72 (352)
T ss_dssp             CSSSSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred             ccCCCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhcc-
Confidence            4455667899988887654431     112222345678888888887    3  457899999999999999999998 


Q ss_pred             CCCCEEEEcCCCchHHH--HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          213 SENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      ++||+|+++.|+|+.+.  ..++..|++++.++++++  +.+|+++|++   +      ++++|++++|+||||.+++  
T Consensus        73 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~--  139 (352)
T 1iug_A           73 APGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG--DTPRPEDVAK---E------GYAGLLLVHSETSTGALAD--  139 (352)
T ss_dssp             CTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCTTTSCC---S------SCSEEEEESEETTTTEECC--
T ss_pred             CCCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHhc---c------CCcEEEEEEecCCcceecC--
Confidence            49999999999999875  445668999999998754  4688888876   2      7899999999999999999  


Q ss_pred             HHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~--~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +++|.++|+++  |+++|+||+|..   +..  ...+.    ..+   .   .+++.|+||.+.+..++||
T Consensus       140 -l~~i~~l~~~~~~~~~li~D~a~~~---~~~--~~~~~----~~~---~---d~~~~s~~K~~~~~~g~G~  195 (352)
T 1iug_A          140 -LPALARAFKEKNPEGLVGADMVTSL---LVG--EVALE----AMG---V---DAAASGSQKGLMCPPGLGF  195 (352)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTTB---TTB--CCCSG----GGT---C---SEEEEESSSTTCCCSCEEE
T ss_pred             -HHHHHHHHHhhCCCCEEEEECCccc---cCc--ceecc----ccC---e---eEEEecCcccccCCCceeE
Confidence             88999999999  999999999973   111  11111    111   2   3788999997665455665

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.88  E-value=5.5e-22  Score=192.48  Aligned_cols=154  Identities=14%  Similarity=0.170  Sum_probs=124.2

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEE
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVP  241 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~  241 (360)
                      ..+..++++.+++++    |.    +++++++++++|+..++.+++. +||+|+++.|.|+.+...+    +..|.+++.
T Consensus        63 ~~~~~~l~~~la~~~----g~----~~~i~~~sG~~a~~~~l~~~~~-~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~  133 (398)
T 2rfv_A           63 NPTTDALEKKLAVLE----RG----EAGLATASGISAITTTLLTLCQ-QGDHIVSASAIYGCTHAFLSHSMPKFGINVRF  133 (398)
T ss_dssp             CHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHHHCC-TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhC-CCCEEEEcCCCcccHHHHHHHHHHHcCCEEEE
Confidence            344566666666665    42    2555555566999999999984 9999999999999988776    778999999


Q ss_pred             eecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 018147          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (360)
Q Consensus       242 v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~  321 (360)
                      ++++       |+++|++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|..+.+... 
T Consensus       134 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-  196 (398)
T 2rfv_A          134 VDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQP-  196 (398)
T ss_dssp             ECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCG-
T ss_pred             eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCCc-
Confidence            8764       78999998875      7999999999999999998   99999999999999999999998665321 


Q ss_pred             CCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccc-cC
Q 018147          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFS-KW  360 (360)
Q Consensus       322 ~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~Rv-Gw  360 (360)
                          +     .++      ..+++.|+||.|+ +|.|+ ||
T Consensus       197 ----~-----~~~------~di~~~s~sK~~~~~g~~~~G~  222 (398)
T 2rfv_A          197 ----L-----QLG------ADIVVHSVTKYINGHGDVIGGI  222 (398)
T ss_dssp             ----G-----GGT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             ----h-----hhC------CcEEEEeCcccccCCCCceEEE
Confidence                1     111      2488999999986 49998 86

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.88  E-value=2.1e-22  Score=193.02  Aligned_cols=186  Identities=13%  Similarity=0.135  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---Hc---cC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LI---RS  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~---l~---~~  213 (360)
                      .++.+.+++.+.+.+... ....|+ ..+..++++++++++    |.   +++|++|+|+++++..++..   +.   . 
T Consensus        45 ~~~~v~~a~~~~~~~~~~-~~~~y~-~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~a~~~~~~~~~~~~~~~~-  114 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKLLH-VSNLYE-NPWQEELAHKLVKHF----WT---EGKVFFANSGTESVEAAIKLARKYWRDKG-  114 (375)
T ss_dssp             SCHHHHHHHHHHHHHCSC-CCTTBC-CHHHHHHHHHHHHTS----SS---CEEEEEESSHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHhccc-cCcccC-CHHHHHHHHHHHhhc----CC---CCeEEEeCchHHHHHHHHHHHHHHhccCC-
Confidence            578899998888876422 133574 456788888888875    43   48999999999999999875   33   4 


Q ss_pred             CC-CEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          214 EN-DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       214 ~g-d~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      +| |+|++++|+|+.+...+...+..             +..++.       .|+++|++++++      ++++|++++|
T Consensus       115 ~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~  181 (375)
T 2eh6_A          115 KNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDE------ETAGIIIEVI  181 (375)
T ss_dssp             CCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCT------TEEEEEECSE
T ss_pred             CCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcC------CeEEEEEeCc
Confidence            78 99999999999877655554322             222221       489999988865      7999999999


Q ss_pred             CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          280 GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       280 ~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      +||||.+. +.+++++|+++|+++|+++|+||+|.++.+.+.  ..++..    ++ .++|  ++   ||||.+++|+|+
T Consensus       182 ~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~----~~-~~~d--~~---s~SK~~~~g~~~  249 (375)
T 2eh6_A          182 QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE--FYAYQH----FN-LKPD--VI---ALAKGLGGGVPI  249 (375)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG----GT-CCCS--EE---EECGGGGTTSCC
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--chhhhh----cC-CCCC--EE---EEcccccCCCCe
Confidence            99999994 688899999999999999999999998655432  222221    11 1244  23   899999999999


Q ss_pred             cC
Q 018147          359 KW  360 (360)
Q Consensus       359 Gw  360 (360)
                      ||
T Consensus       250 G~  251 (375)
T 2eh6_A          250 GA  251 (375)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.87  E-value=3.4e-22  Score=192.49  Aligned_cols=193  Identities=10%  Similarity=0.020  Sum_probs=146.9

Q ss_pred             hhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCC--CCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCCh
Q 018147          123 ALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYS--HSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGA  199 (360)
Q Consensus       123 ~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga  199 (360)
                      ..+..+..++++.++...|+.+++++.+.+..       .|.  ...+..++++.+++++    |  ++++ +|++|+|+
T Consensus        13 ~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g--~~~~~~i~~~~g~   79 (393)
T 2huf_A           13 EPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLF----Q--TNNIATFCLSASG   79 (393)
T ss_dssp             SCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHH----T--CCCSEEEEESSCH
T ss_pred             cccCCCCeEEecCCCCCCCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHh----C--CCCCcEEEEcCcH
Confidence            33455666777777778899888876553321       232  2345677788887776    3  4555 89999999


Q ss_pred             HHHHHHHHHHHccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 018147          200 SPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (360)
Q Consensus       200 ~~al~~~~~~l~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~  277 (360)
                      ++|+..++.+++ .+||+|+++.|+|+.+  ...++..|++++.++++++  +.+|+++|++++++.     ++++|+++
T Consensus        80 t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~  151 (393)
T 2huf_A           80 HGGMEATLCNLL-EDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIH-----KPSVLFLT  151 (393)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred             HHHHHHHHHHHh-CCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhcc-----CCcEEEEE
Confidence            999999999998 4999999999999884  3445668999999998754  579999999999764     68999999


Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       278 ~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +|+||||.+++   +++|+++|+++|+++|+|++|..   ...  ...+    ...     + ..+++.|+||.++|
T Consensus       152 ~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~---~~~--~~~~----~~~-----~-~d~~~~s~sK~l~g  210 (393)
T 2huf_A          152 QGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL---GGA--PMFM----DRW-----E-IDAMYTGSQKVLGA  210 (393)
T ss_dssp             SEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTB--CCCT----TTT-----T-CSEEECCSSSTTCC
T ss_pred             ccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCC--Ccch----hhc-----C-ccEEEECCCccccc
Confidence            99999999999   88999999999999999999753   111  1111    111     1 24788999998653

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.87  E-value=8.2e-23  Score=202.79  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=130.2

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHc
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH  235 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~  235 (360)
                      ...|+ ..|.+ +++++++++.+.+|.    +++++++|+++|+..++. ++ ++||+|+++.|.|+.|...    ++..
T Consensus       124 ~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~  195 (464)
T 1ibj_A          124 PYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_dssp             SCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred             Ccccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHc
Confidence            45677 45666 788999999888773    477777888899998886 66 5999999999999998764    4567


Q ss_pred             CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       236 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |++++.++++       |+++|++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|...
T Consensus       196 G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g  259 (464)
T 1ibj_A          196 GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP  259 (464)
T ss_dssp             TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred             CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc
Confidence            9999998763       78999998865      7999999999999999997   899999999999999999999762


Q ss_pred             ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       316 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      ..     +.++ .    ++      ..|+++|+||.|+|  |+|+||
T Consensus       260 ~~-----~~~~-~----~~------~div~~S~sK~~~g~~Gl~~G~  290 (464)
T 1ibj_A          260 VL-----SRPL-E----LG------ADIVMHSATKFIAGHSDVMAGV  290 (464)
T ss_dssp             TT-----CCGG-G----TT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             cc-----CChh-h----cC------CEEEEECCcccccCCCCCcEEE
Confidence            21     1111 1    11      35899999999986  899997

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.87  E-value=6e-22  Score=188.23  Aligned_cols=193  Identities=12%  Similarity=0.019  Sum_probs=144.1

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~  209 (360)
                      +++.+|...|+.+++++.+.+       .+.|+.  ..+..++|+++++++    |.+.+++++++|+|+++|+..++++
T Consensus         7 ~~~~gp~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~~~~~~   75 (366)
T 1m32_A            7 LLTPGPLTTSRTVKEAMLFDS-------CTWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGS   75 (366)
T ss_dssp             ECSSSSCCCCHHHHHTTCCCC-------CTTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCcCCCHHHHHHHhhhh-------cCCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHHHHHHH
Confidence            333333356888887765421       112221  157899999999998    3222345899999999999999999


Q ss_pred             HccCCCCEEEEcC-CCchH-HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          210 LIRSENDGILCPI-PQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       210 l~~~~gd~Vlv~~-P~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++. +||+|+++. ++|+. +...++..|++++.++++++  +.+|+++|++++++.    .++++|++++|+||||.++
T Consensus        76 ~~~-~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~  148 (366)
T 1m32_A           76 ALG-PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV--ARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLN  148 (366)
T ss_dssp             SCC-TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT--SCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEEC
T ss_pred             hcC-CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhcC----CCeEEEEEecccCCcceec
Confidence            984 999988776 66664 67778888999999998753  579999999999761    1478999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   +++|.++|+++|+++|+||+|......     .++    ...     + ..+++.|+||.+++..++||
T Consensus       149 ~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~----~~~-----~-~di~~~s~~K~~~~~~g~G~  203 (366)
T 1m32_A          149 P---IDEVGALAHRYGKTYIVDAMSSFGGIP-----MDI----AAL-----H-IDYLISSANKCIQGVPGFAF  203 (366)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCT----TTT-----T-CSEEEEESSSTTCCCSSEEE
T ss_pred             C---HHHHHHHHHHcCCEEEEECCccccCcC-----ccc----ccc-----C-ccEEEecCcccccCCCceEE
Confidence            9   889999999999999999999853221     111    111     1 24889999998866666676

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.87  E-value=1.3e-21  Score=191.29  Aligned_cols=177  Identities=16%  Similarity=0.093  Sum_probs=146.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      ..|+.+++++.+.+...      .|++ ..+..++|+++++++.        .++|++|+|+++++..++.++.  +||+
T Consensus        29 ~~p~~~~~a~~~~~~~~------~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~--~gd~   92 (424)
T 2po3_A           29 IDRARLYERLDRALDSQ------WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG--LTGE   92 (424)
T ss_dssp             CCHHHHHHHHHHHHHHT------CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT--CCSE
T ss_pred             CChHHHHHHHHHHHhcC------CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC--CCCE
Confidence            45778888888877652      3777 7889999999999982        2589999999999999999984  7899


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++      ++++|+++|   |||...+   +++|++
T Consensus        93 Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~tG~~~~---l~~i~~  159 (424)
T 2po3_A           93 VIMPSMTFAATPHALRWIGLTPVFADIDPD-TGNLDPDQVAAAVTP------RTSAVVGVH---LWGRPCA---ADQLRK  159 (424)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCTT-TSSBCHHHHGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHH
T ss_pred             EEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhhCc------CCcEEEEEC---CCCCcCC---HHHHHH
Confidence            999999999999999999999999999763 578999999998865      788888864   8998765   899999


Q ss_pred             HHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCccccccccC
Q 018147          298 FCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYFHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~RvGw  360 (360)
                      +|+++|+++|+||+|. ++.+++. +   +    .    .++|   |++.|||  |.++| .|+||
T Consensus       160 la~~~~~~li~Dea~~~g~~~~~~-~---~----~----~~~d---i~~~S~sk~K~l~~-~~~G~  209 (424)
T 2po3_A          160 VADEHGLRLYFDAAHALGCAVDGR-P---A----G----SLGD---AEVFSFHATKAVNA-FEGGA  209 (424)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE-E---T----T----SSSS---EEEEECCTTSSSCC-SSCEE
T ss_pred             HHHHcCCEEEEECccccCCeECCe-e---c----c----cccC---EEEEeCCCCCCccC-CCCeE
Confidence            9999999999999999 5666542 1   1    1    1134   8899999  77877 78887

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.87  E-value=1.1e-21  Score=190.89  Aligned_cols=189  Identities=14%  Similarity=0.130  Sum_probs=138.8

Q ss_pred             CCCHHHHHHHHHHHH--cCCCCCCC-CCC----CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          139 LFSADSIERAWQILD--QIPGRATG-AYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~--~~~~~~~~-~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      ..|+.+++++.+.+.  ........ .|.    ...+..++++.+++++    |  +++++|++|+|+++|+..++.++.
T Consensus        33 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~v~~~~ggt~a~~~a~~~l~  106 (423)
T 3lvm_A           33 PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGATESDNLAIKGAA  106 (423)
T ss_dssp             CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----C--CCCCeEEEeCChHHHHHHHHHHHH
Confidence            458888888877665  21110000 111    1123455666666665    4  567899999999999999999886


Q ss_pred             c---CCCCEEEEcCCCchHHHHHHH---HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          212 R---SENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       212 ~---~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      .   ++||+|+++.|+|+.+...+.   ..|++++.++++++  +.+|+++|++++++      ++++|++++|+||||.
T Consensus       107 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~  178 (423)
T 3lvm_A          107 NFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRD------DTILVSIMHVNNEIGV  178 (423)
T ss_dssp             HHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCT------TEEEEECCSBCTTTCB
T ss_pred             HhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCC--CccCHHHHHHhcCC------CcEEEEEeCCCCCCcc
Confidence            2   379999999999999887774   45999999998763  68899999999876      7899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++   +++|+++|+++|++||+||+|......     ..+.    ..     + ..+++.|+||.+++. .+||
T Consensus       179 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~----~~-----~-~di~~~s~sK~~g~~-g~G~  234 (423)
T 3lvm_A          179 VQD---IAAIGEMCRARGIIYHVDATQSVGKLP-----IDLS----QL-----K-VDLMSFSGHKIYGPK-GIGA  234 (423)
T ss_dssp             BCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCTT----TS-----C-CSEEEEESTTTTSCS-SCEE
T ss_pred             ccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----cChh----hc-----C-CCEEEechHHhcCCC-CeEE
Confidence            999   888999999999999999998763221     1111    11     1 238899999976542 2554

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.87  E-value=6.8e-22  Score=191.35  Aligned_cols=198  Identities=9%  Similarity=-0.006  Sum_probs=149.0

Q ss_pred             CCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHH
Q 018147          126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVH  204 (360)
Q Consensus       126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-I~~t~Ga~~al~  204 (360)
                      ..|..+.++.+|..+++.+++++.+.+       ...|.+  ...++.+.+.+++.+.+|.  +.++ |++|+|+++++.
T Consensus        10 ~~~~~~~~~pgp~~~~~~v~~a~~~~~-------~~~~~~--~~~~~~~~~~~~la~~~~~--~~~~~v~~~~sgt~al~   78 (411)
T 3nnk_A           10 NPPSRLLMGPGPINADPRVLRAMSSQL-------IGQYDP--AMTHYMNEVMALYRGVFRT--ENRWTMLVDGTSRAGIE   78 (411)
T ss_dssp             CCCCCEEESSSCCCCCHHHHHHHTSCC-------CCTTCH--HHHHHHHHHHHHHHHHHTC--CCSEEEEEESCHHHHHH
T ss_pred             CCccceeecCCCCCCCHHHHHHhhccc-------cccccH--HHHHHHHHHHHHHHHHhCC--CCCcEEEECCCcHHHHH
Confidence            456667777888889999888765321       112221  2334444444444444453  3444 888999999999


Q ss_pred             HHHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          205 MMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       205 ~~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                      .++..++ .+||+|+++.|+|+.  +...++..|++++.++++.+  +.+|+++|++++++.     ++++|++++|+||
T Consensus        79 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~np  150 (411)
T 3nnk_A           79 AILVSAI-RPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG--EVFTPDQVEDAVKRI-----RPRLLLTVQGDTS  150 (411)
T ss_dssp             HHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETT
T ss_pred             HHHHHhc-CCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHhhC-----CCeEEEEeCCCCC
Confidence            9999998 499999999999977  88899999999999998644  578999999999864     7999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ||.+.+   +++|+++|+++|+++|+||+|......     ..+.    .     .+ ..+++.|++|.+++..++||
T Consensus       151 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~----~-----~~-~d~~~~s~~K~l~~~~g~g~  210 (411)
T 3nnk_A          151 TTMLQP---LAELGEICRRYDALFYTDATASLGGNP-----LETD----V-----WG-LDAVSAGMQKCLGGPSGTSP  210 (411)
T ss_dssp             TTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-----CCTT----T-----TT-CSEEECCSTTTTCCCSSEEE
T ss_pred             cceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-----cchh----c-----cC-CcEEEecCccccCCCCceEE
Confidence            999998   889999999999999999997652211     1110    0     11 24889999998777667775

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.87  E-value=3.8e-22  Score=189.15  Aligned_cols=167  Identities=14%  Similarity=0.175  Sum_probs=126.4

Q ss_pred             ccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 018147          130 ILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ  208 (360)
Q Consensus       130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~  208 (360)
                      +++++.+ ...+++.+++++.+..   .  ....|.+..+..+||+++|+++    |    .+++++++|+++++..++.
T Consensus         5 ~i~~~~~~~~~p~~~~~~a~~~~~---~--~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~~~~   71 (347)
T 1jg8_A            5 MIDLRSDTVTKPTEEMRKAMAQAE---V--GDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIM   71 (347)
T ss_dssp             CEECSCGGGCCCCHHHHHHHHTCC---C--CCGGGTCCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHH
T ss_pred             EEEeccccCCCCCHHHHHHHhcCC---C--CCcccCCChHHHHHHHHHHHHh----C----CceEEEecCcHHHHHHHHH
Confidence            3444444 1124566666654321   1  1336877888999999999998    2    2467888888899999999


Q ss_pred             HHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-c
Q 018147          209 LLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-G  284 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G  284 (360)
                      +++ ++||+|+++.|+|....   ..++..|++++.+ .++  ++.+|+++|++++++.....+++++|++++||||| |
T Consensus        72 ~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G  147 (347)
T 1jg8_A           72 AHT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGG  147 (347)
T ss_dssp             HHC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTS
T ss_pred             Hhc-CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCC
Confidence            988 49999999999997543   3567789999888 432  35689999999885310001258999999999999 9


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+++.+++++|+++|+++|+++|+|++|.
T Consensus       148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~  176 (347)
T 1jg8_A          148 RVVPLENIKEICTIAKEHGINVHIDGARI  176 (347)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCEEEEEETTH
T ss_pred             ccCcHHHHHHHHHHHHHCCCEEEeehhhh
Confidence            99999999999999999999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.87  E-value=2.5e-21  Score=187.39  Aligned_cols=197  Identities=11%  Similarity=0.030  Sum_probs=146.2

Q ss_pred             ccccCcc---CCCCCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          130 ILDRSET---QGLFSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      ++++..+   +.+.++.+++++.+.+.+...   .....|+...+..++|+++|+++    |  . +++|++|+|++ ++
T Consensus        48 ~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~-~~~i~~~sG~~-a~  119 (401)
T 2bwn_A           48 ITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q--K-EAALVFSSAYN-AN  119 (401)
T ss_dssp             EEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T--C-SEEEEESCHHH-HH
T ss_pred             EEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----C--C-CcEEEECCcHH-HH
Confidence            4555444   233577899998888876321   01234666678899999999987    3  2 57889988877 66


Q ss_pred             HHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       204 ~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                      ..++..+.. .+||.|+++.|+|+.+...++..|++++.++.+       |+++|++.++...  ..++++|++++|+||
T Consensus       120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~~v~~~~~~np  190 (401)
T 2bwn_A          120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADD--PAAPKLIAFESVYSM  190 (401)
T ss_dssp             HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSC--TTSCEEEEEESBCTT
T ss_pred             HHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhc--cCCceEEEEecCcCC
Confidence            666665531 389999999999999999999999999998864       6889998887420  026889999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      ||.+++   +++|+++|+++|+++|+||+|....|+..  ...+... .++.   ++ ..++++||||+|+
T Consensus       191 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--g~~~~~~-~~~~---~~-~~i~~~s~sK~~~  251 (401)
T 2bwn_A          191 DGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPR--GAGVAER-DGLM---HR-IDIFNGTLAKAYG  251 (401)
T ss_dssp             TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTT--SCCHHHH-HTCG---GG-CSEEEEESSSTTC
T ss_pred             CCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCC--Cceeeec-cCcc---cc-CcEEEeechhhcc
Confidence            999999   89999999999999999999997666532  2233321 2111   12 3588999999997

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.87  E-value=1.2e-21  Score=188.85  Aligned_cols=178  Identities=16%  Similarity=0.200  Sum_probs=143.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vl  219 (360)
                      ++++++++.+.+.+.    ...|.+..+..++|+++++++    |  . .++|++++| ++|+..++.++ + ++||+|+
T Consensus        16 ~~~~~~a~~~~l~~~----~~~~~~~~~~~~l~~~la~~~----~--~-~~~i~~~sG-t~al~~~l~~l~~-~~gd~Vi   82 (388)
T 1b9h_A           16 DDAERNGLVRALEQG----QWWRMGGDEVNSFEREFAAHH----G--A-AHALAVTNG-THALELALQVMGV-GPGTEVI   82 (388)
T ss_dssp             CHHHHHHHHHHHHTS----CCBTTTCSHHHHHHHHHHHHT----T--C-SEEEEESCH-HHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHHcC----CeeecCCHHHHHHHHHHHHHh----C--C-CeEEEeCCH-HHHHHHHHHHcCC-CCcCEEE
Confidence            488999998888763    235777778999999999998    2  2 256777777 89999999998 7 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++      ++++|+   |+||||.+.+   +++|.++|
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la  149 (388)
T 1b9h_A           83 VPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKIS  149 (388)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHH
Confidence            9999999999999999999999999864 478999999998865      677766   9999999987   89999999


Q ss_pred             HHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCccccccccC
Q 018147          300 KKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYFHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~RvGw  360 (360)
                      +++|+++|+|++|.. ..+.+.    .+    ..+    +   .|.+.|||  |.++|+ |.||
T Consensus       150 ~~~~~~li~D~a~~~g~~~~~~----~~----~~~----~---~i~~~S~s~~K~l~g~-~~G~  197 (388)
T 1b9h_A          150 ADTGVPLLQDAAHAHGARWQGK----RV----GEL----D---SIATFSFQNGKLMTAG-EGGA  197 (388)
T ss_dssp             HHHTCCBCEECTTCTTCEETTE----EG----GGS----S---SCEEEECCTTSSSCSS-SCEE
T ss_pred             HHcCCEEEEecchhcCCccCCe----ec----ccc----c---ceEEEEccCCCcccCC-CeEE
Confidence            999999999999986 334321    11    111    1   37889999  566664 7886

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.87  E-value=6.4e-22  Score=191.03  Aligned_cols=190  Identities=12%  Similarity=0.023  Sum_probs=139.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc----cCC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI----RSE  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~----~~~  214 (360)
                      ..|+.+++++.+.+.+........|....+..++.+.+.+++.+.+|  +++++|++|+|+++|+..++++++    . +
T Consensus        31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~~~~~l~~~~~~-~  107 (400)
T 3vax_A           31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNIALLGLAPYGER-T  107 (400)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHHHHHTTHHHHHH-H
T ss_pred             CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHHHHHHHHHhhcc-C
Confidence            46888999988877643110111222222333444555555555555  467899999999999999999886    5 8


Q ss_pred             CC-EEEEcCCCchHHHHHHHH---cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          215 ND-GILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       215 gd-~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      || +|+++.+.|+.+...+..   .|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+++  
T Consensus       108 gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~--  177 (400)
T 3vax_A          108 GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQP--  177 (400)
T ss_dssp             TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC--
T ss_pred             CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCc--
Confidence            99 999999999988766554   599999999875  368899999998876      7899999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS  358 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv  358 (360)
                       +++|+++|+++|+++|+|++|.....     ...       +... .+   +++.|+||.+++ |+++
T Consensus       178 -l~~i~~la~~~~~~li~D~a~~~~~~-----~~~-------~~~~-~d---~~~~s~~K~~g~~g~g~  229 (400)
T 3vax_A          178 -VAELAQQLRATPTYLHVDAAQGYGKV-----PGD-------LTTP-ID---MISISGHKIGAPKGVGA  229 (400)
T ss_dssp             -HHHHHHHHTTSSCEEEEECTTTTTTS-----GGG-------GGSC-CS---EEEEETGGGTSCSSCEE
T ss_pred             -HHHHHHHHHhcCCEEEEEhhhhcCCC-----CcC-------hhhc-Cc---EEEEeHHHhCCCCceEE
Confidence             78999999999999999999985221     111       1111 22   788999996554 3443

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.87  E-value=5.9e-22  Score=191.74  Aligned_cols=186  Identities=12%  Similarity=0.124  Sum_probs=138.8

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC-----C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----E  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~-----~  214 (360)
                      .++.+++++.+.+..... ....|     ..++++++++.+.+.+|    +++|++|+|+++|+..+++.+...     +
T Consensus        57 ~~~~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~  126 (397)
T 2ord_A           57 SHPRLVEAIKDQAEKLIH-CSNLF-----WNRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIARKYGKKKSE  126 (397)
T ss_dssp             TCHHHHHHHHHHHHHCSC-CCTTS-----EEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHhccc-Ccccc-----CCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhcCCC
Confidence            378899999888876422 11123     23445555555555545    589999999999999999987520     4


Q ss_pred             -CCEEEEcCCCchH-HHHHHHHcCCe------------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          215 -NDGILCPIPQYPL-YSASIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       215 -gd~Vlv~~P~y~~-~~~~~~~~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                       ++.|++++|+|.. +...++..|.+            ++.++.       .|+++|++++++      ++++|++++|+
T Consensus       127 ~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~  193 (397)
T 2ord_A          127 KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQ  193 (397)
T ss_dssp             TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEE
T ss_pred             CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEeccc
Confidence             4789999999965 44467777776            666654       278999998865      79999999999


Q ss_pred             CCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          281 NPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       281 NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      ||||. +++.+++++|+++|+++|+++|+||+|.++.+.+.  +.++..+    + ..+|  ++   ||||.|++|+|+|
T Consensus       194 nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~----~-~~~d--~~---s~sK~~~~G~r~G  261 (397)
T 2ord_A          194 GESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK--LFAYQKY----G-VVPD--VL---TTAKGLGGGVPIG  261 (397)
T ss_dssp             CTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHHHH----T-CCCS--EE---EECGGGGTTSCCE
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc--chhhhhh----C-CCCC--ee---eeccccCCCcCeE
Confidence            99999 99999999999999999999999999998766553  3332222    1 1245  23   8899999999999


Q ss_pred             C
Q 018147          360 W  360 (360)
Q Consensus       360 w  360 (360)
                      |
T Consensus       262 ~  262 (397)
T 2ord_A          262 A  262 (397)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.86  E-value=2.4e-21  Score=194.37  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHccCCC---
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIRSEN---  215 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l~~~~g---  215 (360)
                      .+.+.+.+.+.+..........|....+..++++++++++.+.+|.+.+++++  ++|+|+++++..+++++.. +|   
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~-~g~~~  187 (514)
T 3mad_A          109 DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRD-WARAT  187 (514)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHH-Hhhhh
Confidence            34455555554443222124456666678899999999999998877666888  9999999999999999974 66   


Q ss_pred             -----CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          216 -----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       216 -----d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                           |+|+++.|+|..+...++..|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+.+  
T Consensus       188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~--  257 (514)
T 3mad_A          188 KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP--  257 (514)
T ss_dssp             HCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC--
T ss_pred             cCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC--
Confidence                 9999999999999999999999999999876  478999999999976      7999999999999999988  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccC-----CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +++|.++|+++|+++|+|++|.++++.     +. +...+..       ...+ -.+++.|++|.+.++.++||
T Consensus       258 -l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~-~~~~~~~-------~~~g-~d~~~~s~~K~l~~~~~~g~  322 (514)
T 3mad_A          258 -IPEIAALAAEHGIGCHVDACLGGFILPWAERLGY-PVPPFDF-------RLEG-VTSVSADTHKYGYGAKGTSV  322 (514)
T ss_dssp             -HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC-CCCCCST-------TSTT-CCEEEECTTTTTCCCSSCEE
T ss_pred             -HHHHHHHHHHhCCeEEEecccccccchhHHhcCC-CCCcccc-------cCCC-CcEEEECchhccCCCCCeEE
Confidence             899999999999999999999987652     10 0111110       0122 24778999999888888886

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.86  E-value=6.7e-22  Score=186.98  Aligned_cols=192  Identities=15%  Similarity=0.039  Sum_probs=143.9

Q ss_pred             cccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCC-CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 018147          131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (360)
Q Consensus       131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~  209 (360)
                      +.++.++...|+.+++++.+.+..      +.|. ...+..++|+++++++    |.+.++++|++|+|+++++..+++.
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~   71 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMRG------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLAN   71 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCCC------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHT
T ss_pred             ccCCCCCCCCCHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHH
Confidence            456667778899888877654322      1222 1234667777777766    5444578899999999999999998


Q ss_pred             HccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          210 LIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       210 l~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++ +  |+|+++.|.|+.+  ...++..|++++.++++++  +.+|+++|++++++.     ++++|++++|+||||.++
T Consensus        72 ~~-~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~  141 (353)
T 2yrr_A           72 LD-R--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG--EPVDPEAVARALKRR-----RYRMVALVHGETSTGVLN  141 (353)
T ss_dssp             CS-C--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT--SCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEEC
T ss_pred             hc-C--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceec
Confidence            86 3  8999999999875  4556778999999998754  579999999999762     588999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   +++|.++|+++|+++|+||+|..   ...  ..++..    ++   .|   +++.|++|.+++...+||
T Consensus       142 ~---~~~i~~l~~~~~~~li~D~a~~~---~~~--~~~~~~----~~---~d---~~~~s~~K~~~~~~g~G~  196 (353)
T 2yrr_A          142 P---AEAIGALAKEAGALFFLDAVTTL---GML--PFSMRA----MG---VD---YAFTGSQKCLSAPPGLAP  196 (353)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTT---TTS--CCCHHH----HT---CS---EEECCTTSTTCCCSSCEE
T ss_pred             C---HHHHHHHHHHcCCeEEEEcCccc---ccc--cccccc----cC---ce---EEEecCcccccCCCceEE
Confidence            9   78999999999999999999963   211  223322    21   23   778899997664333565

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.86  E-value=5.1e-22  Score=192.26  Aligned_cols=184  Identities=14%  Similarity=0.140  Sum_probs=134.3

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC------C
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E  214 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~------~  214 (360)
                      ++.+++++.+.+.+... ....|..     ..++++++++.+.+|    .++|++|+|+++|+..+++.+...      +
T Consensus        57 ~p~v~~a~~~~~~~~~~-~~~~~~~-----~~~~~l~~~la~~~~----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~  126 (406)
T 4adb_A           57 HPELREALNEQASKFWH-TGNGYTN-----EPVLRLAKKLIDATF----ADRVFFCNSGAEANEAALKLARKFAHDRYGS  126 (406)
T ss_dssp             CHHHHHHHHHHHTTCSC-CCTTSCC-----HHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhccc-ccCCcCC-----HHHHHHHHHHHhhCC----CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            78899999888876322 1122322     234444555555444    459999999999999999988631      5


Q ss_pred             C-CEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          215 N-DGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       215 g-d~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      | |.|++++|+|+.+...+...+.             .+..++.       .|+++|++++++      ++++|+++ |+
T Consensus       127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~-p~  192 (406)
T 4adb_A          127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDD------STCAVIVE-PI  192 (406)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCST------TEEEEEEC-SE
T ss_pred             CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcC------CeEEEEEe-CC
Confidence            5 9999999999988665555554             2333322       379999988865      78888888 99


Q ss_pred             CCcccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          281 NPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       281 NPTG~~~--~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      ||||.++  +.+++++|+++|++||+++|+||+|.++.+.+.  ...+...  +   ..+|  ++   ||||+|++|+|+
T Consensus       193 np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~--~---~~~d--~~---t~sK~~~~G~r~  260 (406)
T 4adb_A          193 QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LYAYMHY--G---VTPD--LL---TTAKALGGGFPV  260 (406)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHHH--T---CCCS--EE---EECGGGGTTSCC
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hHHHHhc--C---CCCC--EE---EechhhcCCCCe
Confidence            9999998  999999999999999999999999998776653  2222111  1   1244  33   679999999999


Q ss_pred             cC
Q 018147          359 KW  360 (360)
Q Consensus       359 Gw  360 (360)
                      ||
T Consensus       261 G~  262 (406)
T 4adb_A          261 GA  262 (406)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.86  E-value=2e-21  Score=188.37  Aligned_cols=197  Identities=9%  Similarity=0.076  Sum_probs=146.4

Q ss_pred             CCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEE-EcCChHHHHHH
Q 018147          127 HPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF-LTDGASPAVHM  205 (360)
Q Consensus       127 ~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~-~t~Ga~~al~~  205 (360)
                      .+..+.+..+|..+++.+++++.+    .   ....|.+  ...++.+.+.+++.+.+|  +++++++ +++|+++++..
T Consensus         9 ~~~~~~~~p~p~~~~~~v~~a~~~----~---~~~~~~~--~~~~~~~~l~~~la~~~g--~~~~~~~~~~~s~t~al~~   77 (416)
T 3isl_A            9 TPLRTIMTPGPVEVDPRVLRVMST----P---VVGQFDP--AFTGIMNETMEMLRELFQ--TKNRWAYPIDGTSRAGIEA   77 (416)
T ss_dssp             CCCCEECSSSSCCCCHHHHHHTTS----C---CCCTTSH--HHHHHHHHHHHHHHHHTT--CCCSEEEEEESCHHHHHHH
T ss_pred             cccceeecCCCcCcCHHHHHHhcc----c---CCCCccH--HHHHHHHHHHHHHHHHhC--CCCCcEEEecCcHHHHHHH
Confidence            345556666677778887766533    1   1223332  224445555555555555  4566665 88999999999


Q ss_pred             HHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          206 MMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      ++..++ .+||+|+++.|+|+.  +...++..|++++.++++.+  +.+|+++|++++++.     ++++|++++|+|||
T Consensus        78 ~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~npt  149 (416)
T 3isl_A           78 VLASVI-EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKV-----KPKIVAMVHGETST  149 (416)
T ss_dssp             HHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTT
T ss_pred             HHHHhc-CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhC-----CCcEEEEEccCCCC
Confidence            999998 499999999999997  77788999999999998765  478999999999843     78999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+.+   +++|.++|+++|+++|+|++|......-     .+    ...     + ..+++.|++|.+.|..++||
T Consensus       150 G~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~----~~~-----~-~d~~~~s~~K~l~g~~g~g~  208 (416)
T 3isl_A          150 GRIHP---LKAIGEACRTEDALFIVDAVATIGGCEV-----KV----DEW-----K-IDAAIGGTQKCLSVPSGMAP  208 (416)
T ss_dssp             TEECC---CHHHHHHHHHTTCEEEEECTTTTTTSCC-----CT----TTT-----T-CSEEECCSSSTTCCCSSEEE
T ss_pred             ceecC---HHHHHHHHHHcCCEEEEECCccccCCCc-----ch----hhc-----C-CCEEEecCccccCCCCCeEE
Confidence            99999   8899999999999999999987422211     11    001     1 23889999998777666664

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.86  E-value=1.7e-21  Score=187.97  Aligned_cols=199  Identities=11%  Similarity=0.081  Sum_probs=141.9

Q ss_pred             CCCccccCcc--CCC---CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET--QGL---FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~--~~~---~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|++.+  +..   .++.+.+++.+.+.+... ....|.. .-..++++.+++++    |    ++++++|+|+++
T Consensus        35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~la~~~----g----~~~v~~~~~gt~  104 (392)
T 3ruy_A           35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL-TSRAFHS-DQLGPWYEKVAKLT----N----KEMVLPMNTGAE  104 (392)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC-CCTTSEE-TTHHHHHHHHHHHH----T----CSEEEEESSHHH
T ss_pred             CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc-cccccCC-HHHHHHHHHHHHhc----C----CCEEEEeCcHHH
Confidence            3456777766  222   478999999888876432 1111222 22456666666654    4    689999999999


Q ss_pred             HHHHHHHHHccC---------CCCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCCCHHHHHH
Q 018147          202 AVHMMMQLLIRS---------ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       202 al~~~~~~l~~~---------~gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      |+..+++.+...         .+|.|+++.|+|..+...+...+..             +..++.       .|+++|++
T Consensus       105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  177 (392)
T 3ruy_A          105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKA  177 (392)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHH
Confidence            999999987641         2689999999998766555444322             333332       17999999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccCCCHHH-HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~-l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      ++++      ++++|++++|+||||.+++.++ +++|+++|+++|+++|+||+|.++.+.+.  ...+. . .+   ..+
T Consensus       178 ~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~~-~-~~---~~~  244 (392)
T 3ruy_A          178 AITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK--VFACD-W-DN---VTP  244 (392)
T ss_dssp             HCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS--SSGGG-G-GT---CCC
T ss_pred             Hhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc--chhhh-c-cC---CCC
Confidence            8875      7999999999999999996665 99999999999999999999998766653  22211 1 11   124


Q ss_pred             CceEEEEeccCcCcccc-ccccC
Q 018147          339 DISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      |  +   .+|||+++|| +|+||
T Consensus       245 d--~---~~~SK~l~gG~~~~G~  262 (392)
T 3ruy_A          245 D--M---YILGKALGGGVFPISC  262 (392)
T ss_dssp             S--E---EEECGGGGTTTSCCEE
T ss_pred             C--E---EEEchhhhCChhhhEE
Confidence            4  2   3779999999 99997

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.86  E-value=1.3e-21  Score=187.89  Aligned_cols=197  Identities=13%  Similarity=0.074  Sum_probs=143.7

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM  207 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~  207 (360)
                      |..+.++.+|..+|+.+++++.+.+       ...|.+  +..++.+.+++++.+.+|.. .+++|++|+|+++++..++
T Consensus        22 ~~~~~~~p~p~~~~~~v~~a~~~~~-------~~~~~~--~~~~~~~~l~~~la~~~~~~-~~~~v~~~~gg~~al~~~~   91 (393)
T 3kgw_A           22 PTRLLLGPGPSNLAPRVLAAGSLRM-------IGHMQK--EMLQIMEEIKQGIQYVFQTR-NPLTLVVSGSGHCAMETAL   91 (393)
T ss_dssp             CCCEECSSSCCCCCHHHHHHTTCCC-------CCTTSH--HHHHHHHHHHHHHHHHHTCC-CSEEEEESCCTTTHHHHHH
T ss_pred             ccceeccCCCCCCCHHHHHHhcccc-------cCcccH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCcHHHHHHHH
Confidence            4455667778888999888765421       111221  12233344444444444532 3346999999999999999


Q ss_pred             HHHccCCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          208 QLLIRSENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       208 ~~l~~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      +.++ .+||+|+++.++|.  .+...++..|++++.++++++  +.+|+++|++++++.     ++++|++++|+||||.
T Consensus        92 ~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~  163 (393)
T 3kgw_A           92 FNLL-EPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGV  163 (393)
T ss_dssp             HHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTE
T ss_pred             HhcC-CCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhC-----CCcEEEEeccCCcchh
Confidence            9998 49999999998885  346778889999999998765  378999999999874     7999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++   +++|.++|+++|+++|+||+|......     ..+    ..     .+ ..+++.|+||.++|+..+||
T Consensus       164 ~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-----~~~----~~-----~~-~d~~~~s~sK~~~~~~g~g~  220 (393)
T 3kgw_A          164 VQP---LDGFGELCHRYQCLLLVDSVASLGGVP-----IYM----DQ-----QG-IDIMYSSSQKVLNAPPGISL  220 (393)
T ss_dssp             ECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-----CCT----TT-----TT-CCEEEEESSSTTCCCSSCEE
T ss_pred             hcc---HHHHHHHHHHcCCEEEEECCccccCcc-----cch----hh-----cC-CCEEEecCcccccCCCceeE
Confidence            999   889999999999999999998742111     111    00     11 23788899998877666765

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.86  E-value=2.7e-21  Score=185.13  Aligned_cols=189  Identities=13%  Similarity=0.056  Sum_probs=142.7

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~  209 (360)
                      .++++.+|..+|+++++++.+.+.       ..|.  .+..++.+++++++.+.+|.+.+.+.+++|+|+++++..++++
T Consensus        20 ~~~~~pgp~~~~~~v~~a~~~~~~-------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~   90 (376)
T 3f0h_A           20 MLNFTVGPVMSSEEVRAIGAEQVP-------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMN   90 (376)
T ss_dssp             CEECSSSSCCCCHHHHHHHTSCCC-------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHH
T ss_pred             ceeecCCCCCCcHHHHHHhcCCCC-------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHh
Confidence            445666677889999888754321       1122  2345677777777777777653334566699999999999999


Q ss_pred             HccCCCCEEEEcCCCchHHH--HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          210 LIRSENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       210 l~~~~gd~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++ ++||+|+++.|.|..+.  ..+...|++++.++.+.+  +.+|+++|++++++      +++++++++|+||||.++
T Consensus        91 ~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~  161 (376)
T 3f0h_A           91 CF-TKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG--KKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLY  161 (376)
T ss_dssp             HC-CTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT--CCCCHHHHHTTTTS------CCCEEEEESEETTTTEEC
T ss_pred             cc-CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHhhcc------CceEEEEecccCCcceec
Confidence            98 49999999998776543  356778999999998753  68999999987654      799999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       288 ~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +   +++|+++|+++|+++|+|++|......     ..+..    .+      ..+++.|+||.+++
T Consensus       162 ~---l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~----~~------~d~~~~s~~K~l~~  210 (376)
T 3f0h_A          162 D---TMMIGEFCKKNNMFFVCDCVSAFLADP-----FNMNE----CG------ADVMITGSQKVLAC  210 (376)
T ss_dssp             C---HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHHH----HT------CSEEEEETTTTTCC
T ss_pred             C---HHHHHHHHHHcCCEEEEEcCccccCcc-----ccccc----cC------ccEEEecCcccccC
Confidence            9   999999999999999999999864321     11211    11      13888999999984

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.86  E-value=7e-22  Score=187.46  Aligned_cols=172  Identities=15%  Similarity=0.149  Sum_probs=130.1

Q ss_pred             CCccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          128 PSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      |.++||+.+ +...++.+++++.+.+..    ....|+......++++.++++    +|   .+++|++|+|+++++..+
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~----~g---~~~~v~~~~~gt~a~~~a   75 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEI----FE---RDVEVFLVPTGTAANALC   75 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHH----HT---SCCEEEEESCHHHHHHHH
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHH----hC---CCCcEEEeCCccHHHHHH
Confidence            455565555 445688888887765421    133555444344555555544    45   245699999999999999


Q ss_pred             HHHHccCCCCEEEEcCCCchHHHHH--HHHc--CCeEEEeecCCCCCcCCCHHHHHH-HHHHHH-hcCCCccEEEEecCC
Q 018147          207 MQLLIRSENDGILCPIPQYPLYSAS--IALH--GGTLVPYYLDEATGWGLETSEVKK-QLEAAK-AKGITVRALVVINPG  280 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~-~~g~~~k~iil~~P~  280 (360)
                      +.+++ ++||.|+++.|+|..+...  +...  |++++.++.+   ++.+|+++|++ ++++.. ..+.++++|++++|+
T Consensus        76 l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~  151 (356)
T 1v72_A           76 LSAMT-PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT  151 (356)
T ss_dssp             HHTSC-CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC
T ss_pred             HHHhc-CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC
Confidence            99988 4999999999999877655  6777  9999998875   26899999998 875310 112358999999998


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      | ||.+++.+++++|+++|++||+++|+|++|..+
T Consensus       152 ~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~  185 (356)
T 1v72_A          152 E-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN  185 (356)
T ss_dssp             T-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred             C-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHh
Confidence            7 999999999999999999999999999999764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.86  E-value=2.2e-20  Score=182.89  Aligned_cols=201  Identities=12%  Similarity=0.103  Sum_probs=147.0

Q ss_pred             CccccCcc-CC--CCCHHHHHHHHHHHHcCCCCCCCCCCCCcC----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          129 SILDRSET-QG--LFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       129 ~~l~~~~~-~~--~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      +++|++.+ +.  ..++.+++++.+.+..... +...|....|    ..++++.+++++    |.    ++.++++++++
T Consensus        65 ~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sGs~  135 (427)
T 2w8t_A           65 DTILLGTYNYMGMTFDPDVIAAGKEALEKFGS-GTCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTGYM  135 (427)
T ss_dssp             EEEECSCCCTTCGGGCHHHHHHHHHHHHHHCS-CCCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCHHH
T ss_pred             eEEEEECcccccCCCCHHHHHHHHHHHHHhCC-CCcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCcHH
Confidence            45555555 21  3578899999888876321 2334444444    466677777666    42    24555555667


Q ss_pred             HHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       202 al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                      ++..++.+++ ++||.|+++.|+|..+...++..|++++.++.       .|+++|++++++...  .++++|++++++|
T Consensus       136 a~~~al~~l~-~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~--~~~~~v~~~~~~n  205 (427)
T 2w8t_A          136 ANLGIISTLA-GKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPK--EPAKLVVLEGVYS  205 (427)
T ss_dssp             HHHHHHHHHS-CTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESEET
T ss_pred             HHHHHHHHhc-CCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccC--CCCeEEEEcCCCC
Confidence            8988999988 49999999999999999999999999998863       489999998875211  1588999999999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |||.+.+   +++|+++|+++|+++|+||+|..+.++..  ..++.... ++   .++ ..|++.||||.++  ++.||
T Consensus       206 ~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~--g~~~~~~~-~~---~~~-~di~~~s~sK~~g--~~gG~  272 (427)
T 2w8t_A          206 MLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN--GRGVYEAQ-GL---EGQ-IDFVVGTFSKSVG--TVGGF  272 (427)
T ss_dssp             TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SCCHHHHT-TC---TTC-CSEEEEESSSTTC--SCCEE
T ss_pred             CCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchHhhc-CC---CcC-CcEEEecchhhhc--cCCCE
Confidence            9999998   89999999999999999999999888642  33333321 11   133 3699999999986  33354

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.86  E-value=5.1e-21  Score=186.99  Aligned_cols=212  Identities=10%  Similarity=0.069  Sum_probs=141.8

Q ss_pred             CCccccCcc----CCCC--CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          128 PSILDRSET----QGLF--SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~----~~~~--p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..++|++.+    +.++  |+.+++++.+.+....     .|+...+...++.++++.+.+.+|... +++|++|+|+++
T Consensus        42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~e  115 (419)
T 2eo5_A           42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-----HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTE  115 (419)
T ss_dssp             CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-----CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHH
T ss_pred             CEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-----cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHH
Confidence            345666554    2333  7999999998886532     122222333455666666666666443 789999999999


Q ss_pred             HHHHHHHHHccCCCCEEEEcCCCchHHHHHHH-HcC-------------CeEEEeecCCC--CCcC------------CC
Q 018147          202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG-------------GTLVPYYLDEA--TGWG------------LE  253 (360)
Q Consensus       202 al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~-~~g-------------~~~~~v~~~~~--~~~~------------~d  253 (360)
                      ++..+++.+..-+||+|++++|+|+++..... ..|             ..++.++.+..  ..|+            +|
T Consensus       116 a~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~  195 (419)
T 2eo5_A          116 AIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRV  195 (419)
T ss_dssp             HHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHH
Confidence            99999987653248999999999986544322 221             25667776432  1122            46


Q ss_pred             HHHHH-HHHHHHHhcC-CCccEEEEecCC-CCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          254 TSEVK-KQLEAAKAKG-ITVRALVVINPG-NPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       254 ~~~L~-~~i~~~~~~g-~~~k~iil~~P~-NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                      +++|+ +++++.  .+ .++ .+++++|+ ||||. +.+++++++|.++|++||+++|+||+|.+|.+.+.  ...+ ..
T Consensus       196 ~~~l~~~~i~~~--~~~~~~-~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~--~~~~-~~  269 (419)
T 2eo5_A          196 IEFIEDYIFVNL--VPPEEV-AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK--LFAI-EN  269 (419)
T ss_dssp             HHHHHHTHHHHT--CCGGGE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGG-GG
T ss_pred             HHHHHHHHHhhc--cCCCCE-EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc--hhhH-Hh
Confidence            88998 888741  01 134 45556775 57896 66888999999999999999999999999766543  2221 11


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                         . ...+|  ++   ||||+|++| +|+||
T Consensus       270 ---~-~~~~d--~~---t~sK~~~~G~~riG~  292 (419)
T 2eo5_A          270 ---F-NTVPD--VI---TLAKALGGGIMPIGA  292 (419)
T ss_dssp             ---G-TCCCS--EE---EECGGGGTTTSCCEE
T ss_pred             ---c-CCCCC--EE---EecccccCCccceEE
Confidence               1 11244  22   899999999 99997

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.85  E-value=2e-21  Score=188.40  Aligned_cols=176  Identities=19%  Similarity=0.221  Sum_probs=142.3

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vl  219 (360)
                      ++.+++++.+.+...      .|.+..+..++++++++++    |  .  +++++++|+++++..++.++ + .+||+|+
T Consensus        43 ~~~v~~a~~~~~~~~------~y~~~~~~~~l~~~la~~~----~--~--~~~v~~~~Gt~a~~~~l~~~~~-~~gd~vl  107 (399)
T 2oga_A           43 RAETDAAIARVLDSG------RYLLGPELEGFEAEFAAYC----E--T--DHAVGVNSGMDALQLALRGLGI-GPGDEVI  107 (399)
T ss_dssp             HHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHT----T--S--SEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHHHH----C--C--CeEEEecCHHHHHHHHHHHhCC-CCcCEEE
Confidence            477888888777642      4666678899999999987    2  2  26777788899999999998 7 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++      ++++|+   |+||||.+.+   +++|.++|
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~  174 (399)
T 2oga_A          108 VPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITP------RTRALL---PVHLYGHPAD---MDALRELA  174 (399)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHH
Confidence            9999999999999999999999998753 478999999998875      677776   5789999987   89999999


Q ss_pred             HHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCCceEEEEecc--CcCccc-cccccC
Q 018147          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGRYF-HFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g-~~RvGw  360 (360)
                      +++|+++|+||+|..+. +++. ..       .    .+.|   +++.|+  ||.+++ | |.||
T Consensus       175 ~~~~~~li~Dea~~~g~~~~~~-~~-------~----~~~d---i~~~S~~~sK~~~~~G-~~g~  223 (399)
T 2oga_A          175 DRHGLHIVEDAAQAHGARYRGR-RI-------G----AGSS---VAAFSFYPGKNLGCFG-DGGA  223 (399)
T ss_dssp             HHHTCEECEECTTCTTCEETTE-ET-------T----CTTC---EEEEECCTTSSSCCSS-CCEE
T ss_pred             HHcCCEEEEECcccccCccCCe-ec-------c----cccC---EEEEeCCCCccCCcCC-ceEE
Confidence            99999999999998753 3321 10       1    1123   788898  899988 8 8886

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.85  E-value=9.4e-21  Score=184.72  Aligned_cols=185  Identities=12%  Similarity=0.150  Sum_probs=145.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~  217 (360)
                      .+|+.+++++.+.+....   ...|++..|..++++++++.+.+.+|..    ++++++|+++++..++.++ + ++||+
T Consensus        13 ~~~~~~~~a~~~~~~~~~---~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~-~~gd~   84 (418)
T 2c81_A           13 QHSDRTRRKIEEVFQSNR---WAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI-GEGDE   84 (418)
T ss_dssp             CCCHHHHHHHHHHHHHTC---CSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred             CCCHHHHHHHHHHHhcCC---ccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC-CCcCE
Confidence            358899999988887631   3348777786666666666666555632    5666777789999999999 7 49999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.|+|..+...++..|++++.++++++ +|.+|+++|++++++      ++++|+++   ||||...+   +++|.+
T Consensus        85 Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~  151 (418)
T 2c81_A           85 VIVPSLTWIATATAVLNVNALPVFVDVEAD-TYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINE  151 (418)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHH
T ss_pred             EEECCCccHhHHHHHHHcCCEEEEEecCCC-CCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHH
Confidence            999999999999999999999999998753 578999999998865      68888765   58998766   899999


Q ss_pred             HHHHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCCceEEEEecc--CcCccccccccC
Q 018147          298 FCKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGRYFHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~RvGw  360 (360)
                      +|+++|++||+|++|..+. +++. +.       ..    ..+   +.+.||  ||.+++| |.||
T Consensus       152 ~~~~~~~~li~D~a~~~~~~~~~~-~~-------~~----~~~---~~~~s~s~~K~~~~g-~~g~  201 (418)
T 2c81_A          152 IAQEHNLFVIEDCAQSHGSVWNNQ-RA-------GT----IGD---IGAFSCQQGKVLTAG-EGGI  201 (418)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE-ET-------TS----SSS---EEEEECCTTSSSCSS-SCEE
T ss_pred             HHHHCCCEEEEECcccccCccCCE-ec-------cc----ccc---eEEEeccCCcccCCC-CeEE
Confidence            9999999999999999976 5432 11       11    123   677888  9999987 8886

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.85  E-value=9.5e-21  Score=187.07  Aligned_cols=201  Identities=13%  Similarity=0.173  Sum_probs=152.5

Q ss_pred             hhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHH
Q 018147           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (360)
Q Consensus        65 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v  144 (360)
                      +..++.+....+..++.+++..+         .+++++..|++-                      +|+..+..  .+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~g~~y----------------------lD~~~~~~--~~~v   57 (467)
T 1ax4_A           11 IKMVEKIRVPSREEREAALKEAG---------YNPFLLPSSAVY----------------------IDLLTDSG--TNAM   57 (467)
T ss_dssp             EEEEEECCCCCHHHHHHHHHHTT---------SCGGGSCGGGCS----------------------EECSCSSS--CCCE
T ss_pred             hceeecccccchhHHHHHHHhcC---------cCcccCCCCcee----------------------eecccCcC--CHHH
Confidence            44455554555677777776541         367888877652                      23333211  1445


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC----CCCE---
Q 018147          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----ENDG---  217 (360)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~----~gd~---  217 (360)
                      .+++.+.+...    ...|.+..+..+|++++++++    |    .++|++|+|+++|+..++.+++ .    +||+   
T Consensus        58 ~~a~~~~~~~~----~~~y~~~~~~~~l~~~la~~~----~----~~~v~~t~ggt~A~~~al~~~~-~~~~~~Gd~~~~  124 (467)
T 1ax4_A           58 SDHQWAAMITG----DEAYAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNP  124 (467)
T ss_dssp             EHHHHHHHHTC----CCCSSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSC
T ss_pred             HHHHHHHHhhc----ccccccCccHHHHHHHHHHHc----C----CCcEEEcCCcHHHHHHHHHHHH-HhhccCCCccce
Confidence            56666665542    346888888999999999998    2    3689999999999999999987 5    8999   


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCC----C----CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCC
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDE----A----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLA  288 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~----~----~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~  288 (360)
                      |+++.+.|..+...+...|.+++.++...    +    .++.+|+++|++++++..  ..++++|++++|+||| |.+++
T Consensus       125 viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~  202 (467)
T 1ax4_A          125 VFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVS  202 (467)
T ss_dssp             EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCC
T ss_pred             EEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCC
Confidence            99998888888888999999988876532    1    134689999999998631  1158999999999999 89999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+++++|+++|++||+++|+||++.
T Consensus       203 ~~~l~~i~~la~~~gi~li~De~~~  227 (467)
T 1ax4_A          203 MSNLKEVYEIAKQHGIFVVMDSARF  227 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             hhHHHHHHHHHHHcCCEEEEEchhh
Confidence            9999999999999999999999854

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.85  E-value=5.3e-21  Score=184.43  Aligned_cols=185  Identities=10%  Similarity=-0.020  Sum_probs=138.7

Q ss_pred             cceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHH
Q 018147           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (360)
Q Consensus        98 ~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia  177 (360)
                      ++||+++|.|..                             .+|+.+++++.    .     ...      ...+.+.++
T Consensus        29 ~v~~~~~~~~~~-----------------------------~~~~~v~~a~~----~-----~~~------~~~~~~~~~   64 (374)
T 2aeu_A           29 ALYDLSGLSGGF-----------------------------LIDEKDKALLN----T-----YIG------SSYFAEKVN   64 (374)
T ss_dssp             GCEECSSCCCCC-----------------------------CCCHHHHHHHT----S-----TTH------HHHHHHHHH
T ss_pred             ceeeecccCCCC-----------------------------CCCHHHHHHHH----H-----hcC------chHHHHHHH
Confidence            689999988765                             45888887764    1     111      134556777


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCH
Q 018147          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      +++.+.+|.. +++++++|+|+++++..++.++   +||+|+++.|+|+.+..   .++..|++++.+         .|+
T Consensus        65 ~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~  131 (374)
T 2aeu_A           65 EYGLKHLGGD-ENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKV  131 (374)
T ss_dssp             HHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCH
T ss_pred             HHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCH
Confidence            7776666643 4578999999999999999987   89999999997765332   677889999887         268


Q ss_pred             HHHHHHHHHHHhcCCCccE-EEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhh
Q 018147          255 SEVKKQLEAAKAKGITVRA-LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~-iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~  333 (360)
                      ++|+++ ++      ++++ |++++|+||||.  +..++++|.++|+++|+++|+||+|..+..... ...+...    .
T Consensus       132 ~~l~~~-~~------~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~----~  197 (374)
T 2aeu_A          132 GEILNK-ID------KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPALK----L  197 (374)
T ss_dssp             HHHHTT-CC------TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHHH----H
T ss_pred             HHHHhc-CC------CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCccc----c
Confidence            888776 33      7899 899999999997  778999999999999999999999988642111 0111221    1


Q ss_pred             CCCCCCceEEEEeccCcCccccccccC
Q 018147          334 GYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +   .   .+++.|+||.++| +|+||
T Consensus       198 ~---~---di~~~S~sK~l~g-~~~G~  217 (374)
T 2aeu_A          198 G---A---DLVVTSTDKLMEG-PRGGL  217 (374)
T ss_dssp             T---C---SEEEEETTSSSSS-CSCEE
T ss_pred             C---C---cEEEecCcccccC-cceEE
Confidence            1   2   3889999999765 79997

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.6e-21  Score=190.66  Aligned_cols=203  Identities=14%  Similarity=0.045  Sum_probs=160.8

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc----CCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SEN  215 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~----~~g  215 (360)
                      .++.+.+.+.+.+..........|....|..++++.+++++.+.+|.+.+++++++|+|+++++..++.+++.    .+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g  155 (497)
T 3mc6_A           76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG  155 (497)
T ss_dssp             CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            3467777777777764322344566777889999999999999999776788999999999999999998852    145


Q ss_pred             ---CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHH
Q 018147          216 ---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       216 ---d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                         |+|+++.|+|+.+...++..|++++.+++++ +++.+|+++|++++++      ++++|++++|+||||.+.+   +
T Consensus       156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l  225 (497)
T 3mc6_A          156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---I  225 (497)
T ss_dssp             CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---C
T ss_pred             CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---H
Confidence               8999999999999999999999999999876 3578999999999876      7999999999999999988   8


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccC-----CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|.++|+++|+++|+|++|..+...     +....+.+...       ..++ .+++.|++|.+.++.++||
T Consensus       226 ~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-------~~g~-d~~~~s~~K~l~~~~~~g~  290 (497)
T 3mc6_A          226 EGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-------VPGV-TSISCDTHKYGFAPKGSSV  290 (497)
T ss_dssp             TTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-------STTC-CEEEEETTTTTCCCSSCEE
T ss_pred             HHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccccc-------CCCC-cEEEECchhhcCCCCCcee
Confidence            89999999999999999999965432     10000011100       1222 3778899999888888886

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.85  E-value=2.7e-21  Score=185.41  Aligned_cols=198  Identities=10%  Similarity=-0.015  Sum_probs=144.2

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM  205 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~  205 (360)
                      ++.+.+..+|..+++.+++++.+.+.      . .|.+.  ....++++++++++....|  +++++|++|+|+++++..
T Consensus         4 ~~~~~~~p~p~~~~~~v~~a~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~   74 (385)
T 2bkw_A            4 SVDTLLIPGPIILSGAVQKALDVPSL------G-HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDI   74 (385)
T ss_dssp             CCCEECSSSSCCCCHHHHHTTSCCCC------C-TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHH
T ss_pred             ccceeecCCCcCchHHHHHHHhcccc------c-cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHH
Confidence            34456666677788888777543211      1 12221  1356677888887755333  467899999999999999


Q ss_pred             HHHHHc---cCCCCEEEEc-CCCchHHH-HHHHHcCCeEEEeec-CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          206 MMQLLI---RSENDGILCP-IPQYPLYS-ASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       206 ~~~~l~---~~~gd~Vlv~-~P~y~~~~-~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      +++++.   . +||+|+++ .|+|..+. ..++..|++++.+++ ++  ++.+|+++|++++++.     ++++|++++|
T Consensus        75 ~~~~~~~~~~-~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~  146 (385)
T 2bkw_A           75 FASNFILSKA-PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI--GESVPLELITEKLSQN-----SYGAVTVTHV  146 (385)
T ss_dssp             HHHHHSCTTC-SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST--TSCCCHHHHHHHHHHS-----CCSEEEEESE
T ss_pred             HHHHHhccCC-CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCC--CCCCCHHHHHHHHhcC-----CCCEEEEEcc
Confidence            999997   5 89999888 56776663 677888999999998 54  4679999999999762     5899999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF  357 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~--~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~R  357 (360)
                      +||||.+++   +++|+++|+++  |+++|+|++|.....     ...+    ..+     + ..+++.|+||.++|..-
T Consensus       147 ~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~~~----~~~-----~-~d~~~~s~~K~~~~~~G  208 (385)
T 2bkw_A          147 DTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEF----DEW-----G-VDFALTASQKAIGAPAG  208 (385)
T ss_dssp             ETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCT----TTT-----T-CSEEEEESSSTTCCCSC
T ss_pred             CCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-----cccc----ccc-----C-ceEEEecCccccccCCc
Confidence            999999998   88999999999  999999999974211     1111    111     1 23788999997764222


Q ss_pred             ccC
Q 018147          358 SKW  360 (360)
Q Consensus       358 vGw  360 (360)
                      +||
T Consensus       209 ~G~  211 (385)
T 2bkw_A          209 LSI  211 (385)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            354

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.84  E-value=7e-21  Score=183.78  Aligned_cols=189  Identities=15%  Similarity=0.199  Sum_probs=145.7

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCC-CCcCcHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~-~~~G~~~lr~~  175 (360)
                      +++++++.|.|..                               ++.+.+++.+.+...      .|. +..+..++|++
T Consensus        22 ~~~~~l~~~~p~~-------------------------------~~~~~~a~~~~~~~~------~~~~~~~~~~~l~~~   64 (391)
T 3dr4_A           22 SDLPRISVAAPRL-------------------------------DGNERDYVLECMDTT------WISSVGRFIVEFEKA   64 (391)
T ss_dssp             ------CCCCCCC-------------------------------CSSHHHHHHHHHHHT------CCSSCSHHHHHHHHH
T ss_pred             CCCceeccCCCCC-------------------------------CHHHHHHHHHHHHcC------CccCCChHHHHHHHH
Confidence            4788899998875                               566788887777652      244 66789999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCH
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      +++++.        .+++++++|+++|+..++.++ + .+||+|+++.|+|+.+...++..|++++.++++++ +|.+|+
T Consensus        65 la~~~~--------~~~~i~~~~gt~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~  134 (391)
T 3dr4_A           65 FADYCG--------VKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDA  134 (391)
T ss_dssp             HHHHHT--------CSEEEEESSHHHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCG
T ss_pred             HHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCH
Confidence            999982        237888999999999999999 7 49999999999999999999999999999999754 478999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhh
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSM  333 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~  333 (360)
                      ++|++++++      ++++|+   |+||||.+.+   +++|.++|+++|+++|+|++|.... +.+. +.       .. 
T Consensus       135 ~~l~~~~~~------~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~-------~~-  193 (391)
T 3dr4_A          135 AKLEALITP------RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK-KS-------GS-  193 (391)
T ss_dssp             GGSGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-ET-------TS-
T ss_pred             HHHHHhcCC------CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe-ee-------cc-
Confidence            999998865      688777   5689999887   8889999999999999999998633 3321 10       00 


Q ss_pred             CCCCCCceEEEEeccC--cCccccccccC
Q 018147          334 GYGEKDISLVSFQSVS--KGRYFHFFSKW  360 (360)
Q Consensus       334 ~~~~~~~~~i~~~S~S--K~~~g~~RvGw  360 (360)
                         ..|   +.+.|||  |.++|| |.||
T Consensus       194 ---~~d---i~~~S~s~~K~l~~g-~gg~  215 (391)
T 3dr4_A          194 ---LGD---CATFSFFGNAIITTG-EGGM  215 (391)
T ss_dssp             ---SSS---EEEEECBTTSSSCCB-SCEE
T ss_pred             ---cCC---EEEEECCCCCcCCcC-CeEE
Confidence               123   6777877  888774 4554

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.84  E-value=2e-20  Score=180.34  Aligned_cols=176  Identities=15%  Similarity=0.186  Sum_probs=144.2

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~V  218 (360)
                      +|+++++++.+.+.+.      .|.+..+..++++++++++    |    .+++++|+|+++|+..++.++ + .+||+|
T Consensus        18 ~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~~gt~al~~~~~~~~~-~~gd~V   82 (393)
T 1mdo_A           18 MGAEELAAVKTVLDSG------WITTGPKNQELEAAFCRLT----G----NQYAVAVSSATAGMHIALMALGI-GEGDEV   82 (393)
T ss_dssp             CCHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred             CCHHHHHHHHHHHhcC------CcCCChHHHHHHHHHHHHh----C----CCcEEEecChHHHHHHHHHHcCC-CCCCEE
Confidence            4788888888887663      1345578899999999998    2    247999999999999999999 7 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|+.+...++..|++++.++++++ ++.+|+++|++++++      ++++|+++   ||||.+.+   +++|.++
T Consensus        83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l  149 (393)
T 1mdo_A           83 ITPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYAL  149 (393)
T ss_dssp             EEESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHH
T ss_pred             EeCCCccHhHHHHHHHCCCEEEEEeccCC-cCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHH
Confidence            99999999999999999999999998754 478999999998875      68888876   48999877   8999999


Q ss_pred             HHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCccccccccC
Q 018147          299 CKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYFHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~RvGw  360 (360)
                      |+++|+++|+|++|.. ..+.+. +          ++.     ..+++.|||  |.++|+ |.||
T Consensus       150 ~~~~~~~li~D~a~~~g~~~~~~-~----------~~~-----~d~~~~S~~k~K~l~~~-~~g~  197 (393)
T 1mdo_A          150 GERYGIPVIEDAAHATGTSYKGR-H----------IGA-----RGTAIFSFHAIKNITCA-EGGI  197 (393)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTE-E----------TTS-----SSEEEEECCTTSSSCSS-SCEE
T ss_pred             HHHcCCeEEEECccccCCeECCe-e----------cCC-----CCeEEEeCCCCCccccc-cceE
Confidence            9999999999999996 344331 1          110     138889999  888775 7886

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.84  E-value=9.3e-21  Score=185.44  Aligned_cols=212  Identities=17%  Similarity=0.118  Sum_probs=135.6

Q ss_pred             CCccccCcc----CCCC-CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGLF-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|++.+    +.+. ++++++++.+.+....     .|....+..++++++++++.+.++  .++++|++|+|++++
T Consensus        29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea  101 (430)
T 3i4j_A           29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLP-----FVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEA  101 (430)
T ss_dssp             CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----CCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHH
T ss_pred             CEEEECCCchhccccCCCCHHHHHHHHHHHHhcc-----cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHH
Confidence            345566554    2233 8999999998887632     244444566788888888887765  457799999999999


Q ss_pred             HHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCCe---------------EEEeecCCCC-CcCCCHHHHHH
Q 018147          203 VHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGT---------------LVPYYLDEAT-GWGLETSEVKK  259 (360)
Q Consensus       203 l~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~~---------------~~~v~~~~~~-~~~~d~~~L~~  259 (360)
                      +..+++.++.       ..+|.|++.+|+|+.+...+...+..               +..++....- ....|+++|++
T Consensus       102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  181 (430)
T 3i4j_A          102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA  181 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence            9999998863       14789999999999887655554432               2222221100 01235688999


Q ss_pred             HHHHHHhcCCCccEEEEecC-CC-Cccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          260 QLEAAKAKGITVRALVVINP-GN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P-~N-PTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      ++++.   +++..++++++| +| ++|. +.+.+++++|.++|++||+++|+||+|.+|.+.+.  ..++... ++   .
T Consensus       182 ~l~~~---~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~--~~~~~~~-~~---~  252 (430)
T 3i4j_A          182 LLERE---GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS--PLALSRW-SG---V  252 (430)
T ss_dssp             HHHHH---CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT-TT---C
T ss_pred             HHHhc---CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhhhh-cC---C
Confidence            88752   112334555555 66 8886 66788899999999999999999999999876653  2222111 01   1


Q ss_pred             CCCceEEEEeccCcCcccc-ccccC
Q 018147          337 EKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      .++     +.+|||++++| +|+||
T Consensus       253 ~~d-----i~t~sK~l~~G~~r~G~  272 (430)
T 3i4j_A          253 TPD-----IAVLGKGLAAGYAPLAG  272 (430)
T ss_dssp             CCS-----EEEECGGGTTTSSCCEE
T ss_pred             CCc-----EEEEcccccCCccccEE
Confidence            244     23689999999 99997

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.84  E-value=4.6e-21  Score=185.17  Aligned_cols=205  Identities=11%  Similarity=0.056  Sum_probs=139.6

Q ss_pred             CccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      .++|++.+    +.+ .|+.+++++.+.+..... ....| +.....++++.++++    +|  +++++|++|+|+++|+
T Consensus        46 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~----~~--~~~~~v~~~~gg~~a~  117 (395)
T 1vef_A           46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQTL-PTPMRGEFYRTLTAI----LP--PELNRVFPVNSGTEAN  117 (395)
T ss_dssp             EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTS-CCHHHHHHHHHHHHT----SC--TTEEEEEEESSHHHHH
T ss_pred             EEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccccc-CCHHHHHHHHHHHHh----cC--CCcCEEEEcCcHHHHH
Confidence            45666554    333 788999999888876432 11224 233344555555544    44  4678999999999999


Q ss_pred             HHHHHHHc--cCCCCEEEEcCCCchH-HHHHHHHcCCeEEE---eecCCCCC-c-CCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          204 HMMMQLLI--RSENDGILCPIPQYPL-YSASIALHGGTLVP---YYLDEATG-W-GLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       204 ~~~~~~l~--~~~gd~Vlv~~P~y~~-~~~~~~~~g~~~~~---v~~~~~~~-~-~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      ..+++++.  . +||.|++++|+|+. +...+...|.+.+.   +|+..+.. + ..|+++|++++++      ++++|+
T Consensus       118 ~~al~~~~~~~-~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~------~~~~v~  190 (395)
T 1vef_A          118 EAALKFARAHT-GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE------ETAAVI  190 (395)
T ss_dssp             HHHHHHHHHHH-SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT------TEEEEE
T ss_pred             HHHHHHHHHHh-CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc------CEEEEE
Confidence            99998763  3 78999999999965 44566666765221   11111100 0 1489999998875      688887


Q ss_pred             EecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          276 VINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       276 l~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++.++||||.++ +.+++++|+++|+++|+++|+||+|.++.+.+.  ..++. . .++   .+|  ++   ||||.|++
T Consensus       191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~~~~~-~-~~~---~~d--~~---s~sK~~~~  258 (395)
T 1vef_A          191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAFE-H-FGI---VPD--IL---TLAKALGG  258 (395)
T ss_dssp             ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHH-H-HTC---CCS--EE---EECGGGGT
T ss_pred             EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--hhHhh-h-cCC---CCC--EE---EEcccccC
Confidence            666688999875 688899999999999999999999998654442  22221 1 111   244  23   88999999


Q ss_pred             cccccC
Q 018147          355 HFFSKW  360 (360)
Q Consensus       355 ~~RvGw  360 (360)
                      |+|+||
T Consensus       259 g~~~G~  264 (395)
T 1vef_A          259 GVPLGV  264 (395)
T ss_dssp             TSSCEE
T ss_pred             CCceEE
Confidence            999997

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.84  E-value=8.6e-21  Score=181.63  Aligned_cols=174  Identities=13%  Similarity=0.161  Sum_probs=139.7

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vl  219 (360)
                      ++ +.+++.+.+...      .|.+..+..++++++++++    |    .+++++++|+++|+..++..+ + .+||+|+
T Consensus        19 ~~-~~~~~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~   82 (374)
T 3uwc_A           19 EP-YLNDLREFIKTA------DFTLGAELEKFEKRFAALH----N----APHAIGVGTGTDALAMSFKMLNI-GAGDEVI   82 (374)
T ss_dssp             HH-HHHHHHHHHHHT------CCSSCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             hH-HHHHHHHHHHcC------CcccChhHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHcCC-CCCCEEE
Confidence            45 777777766542      4677788999999999997    2    237889999999999999998 7 4999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++.|+|+.+...++..|++++.++++  .++.+|+++|++++++      ++++|+   |+||||.+.+   +++|.++|
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~  148 (374)
T 3uwc_A           83 TCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIA  148 (374)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHH
Confidence            99999999999999999999999987  3578999999998865      677776   8999999987   88999999


Q ss_pred             HHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCccc-cccccC
Q 018147          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYF-HFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g-~~RvGw  360 (360)
                      +++|+++|+|++|..+. ++.. +.       .    ...|   +++.|+|  |.+++ |. .||
T Consensus       149 ~~~~~~li~D~~~~~g~~~~~~-~~-------~----~~~d---~~~~s~~~~K~l~~~g~-~g~  197 (374)
T 3uwc_A          149 KKHNLHIVEDACQTILGRINDK-FV-------G----SWGQ---FACFSLHPLKNLNVWSD-AGV  197 (374)
T ss_dssp             HHTTCEEEEECTTCTTCEETTE-ET-------T----SSSS---EEEEECSSSSSSCCSSC-CEE
T ss_pred             HHcCCEEEEeCCCccCceeCCe-ec-------c----cccc---EEEEeCCCCCcCCccce-eEE
Confidence            99999999999998743 2221 11       0    0123   6778866  99987 65 553

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.83  E-value=3.3e-20  Score=181.48  Aligned_cols=198  Identities=16%  Similarity=0.152  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc--C----
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S----  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~--~----  213 (360)
                      .++.+++++.+.+..........|... ...++++.++++    ++  +++++|++|+|+++|+..+++.+..  +    
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~la~~----~~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~  132 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFGGITHA-PAIELCRKLVAM----TP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEECH-HHHHHHHHHHHH----SC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcccccccccCCH-HHHHHHHHHHHh----CC--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            488999999988876421011234321 134455555544    44  4688999999999999999886531  1    


Q ss_pred             CCCEEEEcCCCchHHHHHHHHc-C-------------CeEEEeecCC---CCCc-CCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          214 ENDGILCPIPQYPLYSASIALH-G-------------GTLVPYYLDE---ATGW-GLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~-g-------------~~~~~v~~~~---~~~~-~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      |||+|++..|+|+.+....... |             ..+..++...   ++.| .+|+++|++++++.   ..++++ +
T Consensus       133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~-v  208 (429)
T 1s0a_A          133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAA-V  208 (429)
T ss_dssp             CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEE-E
T ss_pred             CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEE-E
Confidence            5899999999998765433221 1             1233444321   1234 48999999998742   114544 5


Q ss_pred             EecC--CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          276 VINP--GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       276 l~~P--~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                      +++|  +||||. +.+.+++++|+++|+++|+++|+||+|.+|.+.+.  ...+. .. +   ..+|  +   -||||++
T Consensus       209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~--~~~~~-~~-~---~~~d--~---~t~sK~l  276 (429)
T 1s0a_A          209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACE-HA-E---IAPD--I---LCLGKAL  276 (429)
T ss_dssp             EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG-GG-T---CCCS--E---EEECGGG
T ss_pred             EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch--HHHhh-hc-C---CCCC--E---EEecccc
Confidence            5566  589995 55788899999999999999999999998655442  21221 11 1   1244  2   2799999


Q ss_pred             ccc-ccccC
Q 018147          353 YFH-FFSKW  360 (360)
Q Consensus       353 ~g~-~RvGw  360 (360)
                      +|| +|+||
T Consensus       277 ~~G~~~iG~  285 (429)
T 1s0a_A          277 TGGTMTLSA  285 (429)
T ss_dssp             GTSSSCCEE
T ss_pred             cCCCccceE
Confidence            999 99997

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.83  E-value=5.1e-20  Score=180.14  Aligned_cols=152  Identities=16%  Similarity=0.184  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeecCCC
Q 018147          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEA  247 (360)
Q Consensus       172 lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~~~~  247 (360)
                      .++++++.+.+.+|    .+++++++|+++|+..++.++++ +||+|+++.|.|..+...++.    .|.+++.++++  
T Consensus        82 ~~~~l~~~la~~~g----~~~~~~~~sG~~Ai~~al~~l~~-~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--  154 (414)
T 3ndn_A           82 TVSVFEERLRLIEG----APAAFATASGMAAVFTSLGALLG-AGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD--  154 (414)
T ss_dssp             HHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHTTCC-TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred             HHHHHHHHHHHHHC----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence            44455555555445    36789999999999999999984 999999999999998777644    89999998764  


Q ss_pred             CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHH
Q 018147          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~  327 (360)
                           |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+...     + 
T Consensus       155 -----d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~-----~-  214 (414)
T 3ndn_A          155 -----DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQG-----F-  214 (414)
T ss_dssp             -----CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCC-----G-
T ss_pred             -----CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCCc-----h-
Confidence                 78999998876      7999999999999999988   88999999999999999999985432211     1 


Q ss_pred             HHHHhhCCCCCCceEEEEeccCcCccc-c-ccccC
Q 018147          328 KVSRSMGYGEKDISLVSFQSVSKGRYF-H-FFSKW  360 (360)
Q Consensus       328 ~~~~~~~~~~~~~~~i~~~S~SK~~~g-~-~RvGw  360 (360)
                          ..+      ..+++.|+||.|++ | +|.||
T Consensus       215 ----~~g------~div~~S~sK~l~~~G~~~~G~  239 (414)
T 3ndn_A          215 ----PLG------VDVVVYSGTKHIDGQGRVLGGA  239 (414)
T ss_dssp             ----GGT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             ----hcC------CCeEeccCCccccCCCCceEEE
Confidence                111      13889999999987 6 78875

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.83  E-value=4e-20  Score=179.52  Aligned_cols=182  Identities=15%  Similarity=0.116  Sum_probs=128.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCC-C-CCCC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc---
Q 018147          139 LFSADSIERAWQILDQIPGRAT-G-AYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~-~-~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~---  211 (360)
                      ..|+.+++++.+.+.+...... . .|..  .....++++.+++++    |  +++++|++|+|+++++..++..++   
T Consensus        39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~al~~al~~~~~~~  112 (416)
T 1qz9_A           39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----G--ARDGEVVVTDTTSINLFKVLSAALRVQ  112 (416)
T ss_dssp             CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----T--CCTTSEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----C--CCcccEEEeCChhHHHHHHHHhhcccc
Confidence            4577888998888865311000 0 1111  123455555555554    4  467899999999999998888775   


Q ss_pred             ---cCCCCE-EEEcCCCchHHHHHH----HHc--CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCC
Q 018147          212 ---RSENDG-ILCPIPQYPLYSASI----ALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (360)
Q Consensus       212 ---~~~gd~-Vlv~~P~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~N  281 (360)
                         . +||+ |+++.++|+.+...+    +..  |++++.+++         +++|++++++      ++++|++++|+|
T Consensus       113 ~~~~-~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~n  176 (416)
T 1qz9_A          113 ATRS-PERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNY  176 (416)
T ss_dssp             HHHS-TTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCT
T ss_pred             cccC-CCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCC------CceEEEEecccc
Confidence               5 8987 455556888655433    234  999988875         5677777764      789999999999


Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc-cC
Q 018147          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS-KW  360 (360)
Q Consensus       282 PTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv-Gw  360 (360)
                      |||.+++   +++|.++|+++|+++|+|++|..   +..  ...+..    .+   .+   +++.|++|.+.+|.|+ ||
T Consensus       177 ptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~--~~~~~~----~~---~d---~~~~s~~K~l~~g~~~~g~  238 (416)
T 1qz9_A          177 KTGYMHD---MQALTALSHECGALAIWDLAHSA---GAV--PVDLHQ----AG---AD---YAIGCTYKYLNGGPGSQAF  238 (416)
T ss_dssp             TTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTS--CCCHHH----HT---CS---EEEECSSSTTCCCTTCCCE
T ss_pred             CcccccC---HHHHHHHHHHcCCEEEEEccccc---cCc--CCChhh----cC---CC---EEEecCcccCCCCCCCeEE
Confidence            9999999   89999999999999999999974   111  122222    11   23   7889999999888887 86

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.83  E-value=1.8e-20  Score=177.95  Aligned_cols=192  Identities=12%  Similarity=0.102  Sum_probs=143.6

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCC-CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ  208 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~  208 (360)
                      ++.++.+|..+|+.+++++.+.+.+.    ...|. ...+..++.+.+.+++.+.+|.. ++++|++|+|+++++..++.
T Consensus         5 ~~~~~p~p~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~   79 (362)
T 3ffr_A            5 KIYFTPGPSELYPTVRQHMITALDEK----IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQ   79 (362)
T ss_dssp             CEEECSSSCCCCTTHHHHHHHHHHTT----TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHH
T ss_pred             ceeccCCCcCCCHHHHHHHHHHhcCC----ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHH
Confidence            45666677788999999988877653    21111 22334566777777777777753 56789999999999999999


Q ss_pred             HHccCCCCEEEEcCCCch-HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          209 LLIRSENDGILCPIPQYP-LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      ++.. + +.|++..+.|. .+...++..|++++.++.+.+  +.+|+++|+  +++      ++++|++++|+||||.++
T Consensus        80 ~l~~-~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~--~~~------~~~~v~~~~~~nptG~~~  147 (362)
T 3ffr_A           80 NCVE-K-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG--KGFYPADIT--VPA------DAEIICLTHNETSSGVSM  147 (362)
T ss_dssp             HHCS-S-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCGGGCC--CCT------TCCEEEEESEETTTTEEC
T ss_pred             hccC-C-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC--CCCCHHHHh--ccC------CccEEEEEcCCCCcceeC
Confidence            9984 6 55666666666 344567788999999998643  688999988  433      799999999999999999


Q ss_pred             CHHHHHHHHHHHHHc-CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc--ccccc
Q 018147          288 AEENQRAIVDFCKKE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY--FHFFS  358 (360)
Q Consensus       288 ~~~~l~~i~~la~~~-~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~--g~~Rv  358 (360)
                      +   +++|+++|+++ |+++|+|++|.......+     +       .    + ..+++.|+||.|+  +|+++
T Consensus       148 ~---l~~i~~la~~~p~~~li~D~a~~~~~~~~~-----~-------~----~-~d~~~~s~~K~~~~~~G~g~  201 (362)
T 3ffr_A          148 P---VEDINTFRDKNKDALIFVDAVSSLPYPKFD-----W-------T----K-IDSVFFSVQKCFGLPAGLGV  201 (362)
T ss_dssp             C---HHHHTTSGGGSTTSEEEEECTTTTTSSCCC-----T-------T----S-CSEEEEETTSTTCCCSCCEE
T ss_pred             C---HHHHHHHHHhCCCCEEEEecccccCCcccC-----h-------h----H-CcEEEEecccccCCCCceEE
Confidence            9   88899999999 999999999986432111     0       0    1 1278899999998  46544

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.83  E-value=2.8e-20  Score=182.57  Aligned_cols=210  Identities=13%  Similarity=0.094  Sum_probs=142.2

Q ss_pred             CCccccCcc-C---CC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHH
Q 018147          128 PSILDRSET-Q---GL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~-~---~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~  201 (360)
                      ..++|++.+ +   .+ .++.+++++.+.+...     ..|....|..++++++++++.+.++.  .. ++|++|+|+++
T Consensus        43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggse  115 (439)
T 3dxv_A           43 RELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-----AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSD  115 (439)
T ss_dssp             CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-----SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHH
T ss_pred             CEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHH
Confidence            345566555 1   23 5889999998888763     23555567778889999999887653  34 79999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCe-E--------------EEeecCCCCCcCC-----CHHHHHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGT-L--------------VPYYLDEATGWGL-----ETSEVKKQ  260 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~-~--------------~~v~~~~~~~~~~-----d~~~L~~~  260 (360)
                      |+..+++.+.. .+++.|++.+|.|..+.......+.. .              ..++....  +..     |+++|+++
T Consensus       116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~  193 (439)
T 3dxv_A          116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY--RNDPTGDAILTLLTEK  193 (439)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB--TTBTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc--cccccHHHHHHHHHHH
Confidence            99999998521 26788999999997655444443322 1              12222211  111     68999998


Q ss_pred             HHHHHhcCCCccEEEEecCCCCcccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCC
Q 018147          261 LEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       261 i~~~~~~g~~~k~iil~~P~NPTG~~~~~~-~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      ++.  ....++++|+++.++|++|.+.+.+ .+++|.++|++||+++|+||+|.+|.+.+.  ...+ ..    .+..+|
T Consensus       194 l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~--~~~~-~~----~~~~~d  264 (439)
T 3dxv_A          194 LAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR--LHCF-EH----EGFVPD  264 (439)
T ss_dssp             HHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS--SSGG-GG----TTCCCS
T ss_pred             HHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHH-Hh----cCCCCC
Confidence            851  0112577777777788888876544 599999999999999999999998655442  2111 11    112245


Q ss_pred             ceEEEEeccCcCccccccccC
Q 018147          340 ISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        ++   ||||+|++|+|+||
T Consensus       265 --i~---s~sK~~~~G~riG~  280 (439)
T 3dxv_A          265 --IL---VLGKGLGGGLPLSA  280 (439)
T ss_dssp             --EE---EECGGGGTTSCCEE
T ss_pred             --EE---EEcchhcCCcceEE
Confidence              22   99999999999997

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.82  E-value=1.6e-20  Score=181.61  Aligned_cols=188  Identities=14%  Similarity=0.061  Sum_probs=132.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCc---CcHH--HHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQ---GIKG--LRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~---G~~~--lr~~ia-~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~  214 (360)
                      |+.+++++.+.+.+..   ...|+...   |.+.  ++++++ +++.+.+|.  ++++|++++|+ +++..++.+++ .+
T Consensus        36 ~~~v~~a~~~~~~~~~---~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~~i~~~sGt-~a~~~~~~~~~-~~  108 (407)
T 2dkj_A           36 SKQVREAVGSVLTNKY---AEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWANVQPHSGS-QANMAVYMALM-EP  108 (407)
T ss_dssp             CHHHHHHHTSGGGGCC---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHH-HHHHHHHHHHC-CT
T ss_pred             CHHHHHHHHhhhhcCc---ccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--CcceEEecchH-HHHHHHHHHhc-CC
Confidence            7888888887775421   23455432   5443  444333 455555553  45567677765 59999999998 49


Q ss_pred             CCEEEEcCCCchHH---HHHHHHcCC--eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          215 NDGILCPIPQYPLY---SASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       215 gd~Vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      ||+|+++.|+|+.+   ...++..|.  ..+.+++++ ++|.+|+++|++++++.     ++++|++++|+||  .+.+ 
T Consensus       109 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~-  179 (407)
T 2dkj_A          109 GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEH-----RPKVIVAGASAYP--RFWD-  179 (407)
T ss_dssp             TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC-
T ss_pred             CCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhc-----CCeEEEEeccccC--CCCC-
Confidence            99999999999887   344455565  444444343 35789999999999853     6899999999998  5555 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        +++|.++|+++|+++|+||+|.. +.+.+.  ..+..   .       . ..+++.|+||+++ |.|+||
T Consensus       180 --l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~---~-------~-~di~~~s~sK~l~-g~~~G~  235 (407)
T 2dkj_A          180 --FKAFREIADEVGAYLVVDMAHFAGLVAAGL--HPNPL---P-------Y-AHVVTSTTHKTLR-GPRGGL  235 (407)
T ss_dssp             --HHHHHHHHHHHTCEEEEECTTTHHHHHTTC--SCCCT---T-------T-CSEEEEESSGGGC-CCSCEE
T ss_pred             --HHHHHHHHHHcCCEEEEEccccccccccCc--cCCcc---c-------c-ccEEEEeccccCC-CCCceE
Confidence              89999999999999999999998 655543  11110   1       1 2488999999776 567886

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.82  E-value=2.7e-19  Score=176.49  Aligned_cols=195  Identities=10%  Similarity=-0.059  Sum_probs=151.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC---CCEEEcCChHHHHHHHHHHHcc----
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQLLIR----  212 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~---~~I~~t~Ga~~al~~~~~~l~~----  212 (360)
                      .++.+.+.+.+.++..    ...|....|..++++++++++.+.+|.+.+.   ..+++|+|+++++..++.++..    
T Consensus        54 ~~~~v~e~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~  129 (452)
T 2dgk_A           54 DDENVHKLMDLSINKN----WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRK  129 (452)
T ss_dssp             CCHHHHHHHHHTTTCB----TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccC----CCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHH
Confidence            4566777776666542    3456666788999999999999998865332   2499999999999999888752    


Q ss_pred             ---CCC-----CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          213 ---SEN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       213 ---~~g-----d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                         .+|     ++|+++. +|..|...++..|++++.+++++ ++|.+|+++|+++|++      ++++|++++|+||||
T Consensus       130 ~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG  201 (452)
T 2dgk_A          130 RMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTG  201 (452)
T ss_dssp             HHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTC
T ss_pred             HHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCc
Confidence               044     6999999 99999999999999999999875 3579999999999976      789999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHc------CCEEEEccCCCCCcc---CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          285 QVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~------~i~lI~DeaY~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      .+.+   +++|+++|+++      |+++++|++|..++.   .+.. ...+ .        .+++ .++..|++|.+.++
T Consensus       202 ~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~-~--------~~~~-d~~~~~~hK~~~~~  267 (452)
T 2dgk_A          202 NYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VWDF-R--------LPRV-KSISASGHKFGLAP  267 (452)
T ss_dssp             BBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC-CCST-T--------STTE-EEEEEETTTTTCCC
T ss_pred             ccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccc-hhhc-C--------CCCC-cEEEECcccccCCC
Confidence            9987   88899999995      999999999998653   2210 0111 0        1232 34567889977778


Q ss_pred             ccccC
Q 018147          356 FFSKW  360 (360)
Q Consensus       356 ~RvGw  360 (360)
                      .|+||
T Consensus       268 ~~~G~  272 (452)
T 2dgk_A          268 LGCGW  272 (452)
T ss_dssp             SSCEE
T ss_pred             CCeEE
Confidence            88886

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.82  E-value=8.7e-20  Score=178.45  Aligned_cols=186  Identities=12%  Similarity=0.096  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC------
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~------  213 (360)
                      .++.+++++.+.+..... ....|     ..++++++++.+.+.+|    .++|++|+|+++|+..+++.+...      
T Consensus        74 ~~p~v~~ai~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~~~~~~~~~  143 (420)
T 2pb2_A           74 CHPALVEALKSQGETLWH-TSNVF-----TNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLARHYACVRHS  143 (420)
T ss_dssp             TCHHHHHHHHHHHTTCCC-CCTTS-----CCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhccc-ccCcc-----CCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHHHHhhhccC
Confidence            478899999888876421 11122     23566666666666655    579999999999999999988621      


Q ss_pred             CC-CEEEEcCCCchHHHH-HHHHcCCe------------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          214 EN-DGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       214 ~g-d~Vlv~~P~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      +| ++|++++|+|..+.. .+...|.+            +..++.       .|+++|++++++      ++++|+++.+
T Consensus       144 ~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~------~~~~vi~~p~  210 (420)
T 2pb2_A          144 PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDD------HTCAVVVEPI  210 (420)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCT------TEEEEEECSE
T ss_pred             CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhcc------CceEEEEeCC
Confidence            56 599999999987643 34445543            444442       279999998875      7888888888


Q ss_pred             CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          280 GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       280 ~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      +|++|. +++.+++++|.++|+++|+++|+||+|.++.+.+.  ...+ .. .++   .+|  ++   ||||++++|+|+
T Consensus       211 ~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~~~-~~-~~~---~~d--ii---t~sK~l~~G~~i  278 (420)
T 2pb2_A          211 QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LFAY-MH-YGV---TPD--IL---TSAKALGGGFPV  278 (420)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHH-HH-HTC---CCS--EE---EECGGGGTTSCC
T ss_pred             cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HHHH-Hh-cCC---CCC--eE---EecccccCCCce
Confidence            888884 68999999999999999999999999998766553  2222 11 111   255  33   789999999999


Q ss_pred             cC
Q 018147          359 KW  360 (360)
Q Consensus       359 Gw  360 (360)
                      ||
T Consensus       279 G~  280 (420)
T 2pb2_A          279 SA  280 (420)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.82  E-value=1.6e-20  Score=179.99  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=142.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~  217 (360)
                      .+++++.+++.+.+...      .|.+..+..++++.+++++    |    .+++++++|+++|+..++.++ + .+||+
T Consensus        13 ~~~~~v~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~sGt~al~~al~~~~~-~~gd~   77 (367)
T 3nyt_A           13 RIKDKIDAGIQRVLRHG------QYILGPEVTELEDRLADFV----G----AKYCISCANGTDALQIVQMALGV-GPGDE   77 (367)
T ss_dssp             HHHHHHHHHHHHHHHHC------CCSSCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred             ccCHHHHHHHHHHHhcC------CccCChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhCC-CCcCE
Confidence            34667777777777652      3556677999999999998    2    247999999999999999998 6 59999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.|+|..+...++..|++++.++++++ +|.+|+++|++++++      ++++|+   |+||||...+   +++|.+
T Consensus        78 Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~  144 (367)
T 3nyt_A           78 VITPGFTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINA  144 (367)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHH
T ss_pred             EEECCCccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHH
Confidence            999999999999999999999999999865 478999999998865      788777   8889998877   888999


Q ss_pred             HHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc--CcCccc-cccccC
Q 018147          298 FCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGRYF-HFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g-~~RvGw  360 (360)
                      +|+++|+++|+|++|.. ..+++. ....           +.|   +++.||  +|.+++ |. .||
T Consensus       145 la~~~~~~li~D~a~~~g~~~~~~-~~~~-----------~~d---i~~~Sf~~~K~l~~~g~-gg~  195 (367)
T 3nyt_A          145 IASKYGIPVIEDAAQSFGASYKGK-RSCN-----------LST---VACTSFFPSAPLGCYGD-GGA  195 (367)
T ss_dssp             HHHHTTCCBEEECTTTTTCEETTE-ETTS-----------SSS---EEEEECCTTSSSCCSSC-CEE
T ss_pred             HHHHcCCEEEEECccccCCeECCe-eccC-----------CCC---EEEEECCCCCcCCCcCc-eeE
Confidence            99999999999999985 333332 1100           123   788897  899987 65 553

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.82  E-value=1.4e-19  Score=178.93  Aligned_cols=203  Identities=14%  Similarity=0.038  Sum_probs=138.6

Q ss_pred             CCccccCccC-CCCCHHHHHHHHHHHHcC---CCC-CCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          128 PSILDRSETQ-GLFSADSIERAWQILDQI---PGR-ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       128 p~~l~~~~~~-~~~p~~v~~~~~~~l~~~---~~~-~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ++++.++.+. ...|+.+.+++.+.+...   ... ....|.. ..-..++++.+++++      ++++++|++|+|+++
T Consensus        66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~t~g~t~  139 (465)
T 3e9k_A           66 ENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV------GANEKEIALMNALTV  139 (465)
T ss_dssp             CBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH------TCCGGGEEECSCHHH
T ss_pred             CCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc------CCCcCCEEEECCHHH
Confidence            4566666663 344555655555544321   100 0112222 122355677777765      356889999999999


Q ss_pred             HHHHHHHHHccCCCC---EEEEcCCCchHHH----HHHHHcCCeEE----E-eecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          202 AVHMMMQLLIRSEND---GILCPIPQYPLYS----ASIALHGGTLV----P-YYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       202 al~~~~~~l~~~~gd---~Vlv~~P~y~~~~----~~~~~~g~~~~----~-v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      +++.++.++++ +||   +|+++.|+|+.+.    ..++..|++++    . ++.+  +++.+|+++|++++++..   +
T Consensus       140 al~~~~~~~~~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--~~~~~d~~~l~~~i~~~~---~  213 (465)
T 3e9k_A          140 NLHLLMLSFFK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--GEETLRIEDILEVIEKEG---D  213 (465)
T ss_dssp             HHHHHHHHHCC-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT--TCSSCCHHHHHHHHHHHG---G
T ss_pred             HHHHHHHHhcc-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC--CCCccCHHHHHHHHHhcC---C
Confidence            99999999974 554   5999999999744    36677898752    2 2332  346899999999997421   1


Q ss_pred             CccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC
Q 018147          270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (360)
Q Consensus       270 ~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S  349 (360)
                      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.....     ...+..    .+   .|   +++.|++
T Consensus       214 ~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~-----~~~~~~----~~---~D---~~~~s~~  275 (465)
T 3e9k_A          214 SIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV-----ELYLHD----WG---VD---FACWCSY  275 (465)
T ss_dssp             GEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHH----HT---CC---EEEECSS
T ss_pred             CeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-----CCchhh----cC---CC---EEEECcc
Confidence            6899999999999999999   88899999999999999999875221     122221    11   23   7889999


Q ss_pred             cCcc-ccccccC
Q 018147          350 KGRY-FHFFSKW  360 (360)
Q Consensus       350 K~~~-g~~RvGw  360 (360)
                      |.+. |..++||
T Consensus       276 K~l~~gp~~~g~  287 (465)
T 3e9k_A          276 KYLNAGAGGIAG  287 (465)
T ss_dssp             STTCCCTTCCCE
T ss_pred             cccccCCCceEE
Confidence            9984 4445664

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.82  E-value=3.2e-20  Score=180.12  Aligned_cols=191  Identities=13%  Similarity=0.017  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      +|+.+++++.+.+.+....   +...|.......++++.+++++.+.+|  +++++|++++| ++|+..++.+++ ++||
T Consensus        37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~-~~gd  112 (417)
T 3n0l_A           37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALI-NPGD  112 (417)
T ss_dssp             CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHS-CTTC
T ss_pred             CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhc-CCCC
Confidence            4888998887766432110   112233444456666666666666666  45667888888 799999999998 4999


Q ss_pred             EEEEcCCCchHHHH---HHHHc--CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          217 GILCPIPQYPLYSA---SIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~---~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      +|+++.|+|..+..   .+...  +..++.++++  .+|.+|+++|++++++.     ++++|++++|+|  |.+.+   
T Consensus       113 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~---  180 (417)
T 3n0l_A          113 KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKLIVCGASAY--ARVID---  180 (417)
T ss_dssp             EEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSEEEECCSSC--CSCCC---
T ss_pred             EEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeEEEECCccc--CccCC---
Confidence            99999999987654   33333  3445666665  45789999999999843     799999888886  77888   


Q ss_pred             HHHHHHHHHHcCCEEEEccCC-CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          292 QRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++|.++|+++|+++|+||+| .++.+.+. .+..+.           + ..|++.|+||+| +|.|.||
T Consensus       181 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~~~-----------~-~di~~~s~sK~l-~g~~~G~  236 (417)
T 3n0l_A          181 FAKFREIADEIGAYLFADIAHIAGLVVAGE-HPSPFP-----------Y-AHVVSSTTHKTL-RGPRGGI  236 (417)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCCTT-----------T-CSEEEEESSTTT-CSCSCEE
T ss_pred             HHHHHHHHHHcCCEEEEECccchhhhhccc-CCCccc-----------c-ceEEEeeCcccc-CCCCeeE
Confidence            899999999999999999996 44444432 111110           1 138899999999 6677886

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.82  E-value=1.6e-19  Score=175.13  Aligned_cols=152  Identities=18%  Similarity=0.153  Sum_probs=124.8

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEee
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYY  243 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~  243 (360)
                      ...++++.+|+++    |    .+++++++|+++|+..++..++. +||+|+++.|.|+.+...+    +..|.+++.++
T Consensus        67 ~~~~l~~~la~~~----g----~~~~~~~~sGt~A~~~al~~~~~-~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~  137 (392)
T 3qhx_A           67 TRTALEAALAAVE----D----AAFGRAFSSGMAAADCALRAMLR-PGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA  137 (392)
T ss_dssp             HHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred             HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence            4667788887775    3    24788999999999999999884 9999999999999877666    56799999987


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+       |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|........   
T Consensus       138 ~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~~---  198 (392)
T 3qhx_A          138 LA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQP---  198 (392)
T ss_dssp             TT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCCG---
T ss_pred             CC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCCh---
Confidence            64       78999999876      7999999999999999988   99999999999999999999986533211   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc-c-ccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-H-FFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~-~RvGw  360 (360)
                        +     .++   .|   ++++|+||.+++ | +|.||
T Consensus       199 --~-----~~~---~d---i~~~S~sK~lg~~g~~~~G~  224 (392)
T 3qhx_A          199 --L-----SLG---AD---VVLHSTTKYIGGHSDVVGGA  224 (392)
T ss_dssp             --G-----GGT---CS---EEEEETTTTTTCSSCCCCEE
T ss_pred             --H-----HhC---Cc---EEEEcCccccCCCCCceEEE
Confidence              0     111   23   889999999987 3 88886

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.82  E-value=1.7e-20  Score=179.90  Aligned_cols=176  Identities=15%  Similarity=0.120  Sum_probs=141.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~V  218 (360)
                      +++++++++.+.+...      .|.+..+..++|+.+++++.        .+++++++|+++|+..++.++ + .+||+|
T Consensus        15 ~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~-~~gd~V   79 (373)
T 3frk_A           15 IEYEIKFKFEEIYKRN------WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDI-GFGDEV   79 (373)
T ss_dssp             HHHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred             CCHHHHHHHHHHHHCC------CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCC-CCcCEE
Confidence            3667777777777652      36667789999999999982        248999999999999999999 7 499999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      +++.|+|..+...++..|++++.++++++ +|.+|+++|++++++      ++++|+   |+||||.+.+   +++|.++
T Consensus        80 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l  146 (373)
T 3frk_A           80 IVPSNTFIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRI  146 (373)
T ss_dssp             EEETTSCTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHH
Confidence            99999999999999999999999998754 478999999998865      688777   6789999887   8899999


Q ss_pred             HHHcCCEEEEccCCCCCc-cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCccc-ccccc
Q 018147          299 CKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYF-HFFSK  359 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g-~~RvG  359 (360)
                      |+++|+++|+|++|.... +++. .          ++ ...|   +++.|||  |.+++ |. .|
T Consensus       147 ~~~~~~~li~D~a~~~g~~~~~~-~----------~~-~~~d---~~~~S~~~~K~l~~~g~-gg  195 (373)
T 3frk_A          147 AKKYNLKLIEDAAQAHGSLYKGM-K----------VG-SLGD---AAGFSFYPAKNLGSLGD-GG  195 (373)
T ss_dssp             HHHHTCEEEEECTTCTTCEETTE-E----------TT-SSSS---EEEEECCTTSSSCCSSS-CE
T ss_pred             HHHcCCEEEEECCcccCCEECCE-e----------cc-cccc---EEEEeCcCCCccCccce-eE
Confidence            999999999999998633 3221 0          00 0123   7788988  99987 54 44

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.81  E-value=2.6e-19  Score=172.84  Aligned_cols=154  Identities=13%  Similarity=0.168  Sum_probs=124.6

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEE
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVP  241 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~  241 (360)
                      ..+..++++++++++.      .+ +.|++++| ++|+..+++.++. +||+|+++.|+|+.....    ++..|.+++.
T Consensus        51 ~~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~  121 (386)
T 1cs1_A           51 NPTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFLK-PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF  121 (386)
T ss_dssp             CHHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHhC-CCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence            3457899999999982      22 66777666 8999999999984 999999999999974443    3567899988


Q ss_pred             eecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 018147          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (360)
Q Consensus       242 v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~  321 (360)
                      ++.+       |+++|++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+..  
T Consensus       122 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~--  183 (386)
T 1cs1_A          122 VDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN--  183 (386)
T ss_dssp             ECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred             eCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            8753       78999999976      7999999999999999997   8999999999999999999999876532  


Q ss_pred             CCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccc-cC
Q 018147          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFS-KW  360 (360)
Q Consensus       322 ~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~Rv-Gw  360 (360)
                         ++     ..+      ..+++.|+||.++ ++.|+ ||
T Consensus       184 ---~~-----~~~------~di~~~s~sK~~~~~~~~~~G~  210 (386)
T 1cs1_A          184 ---PL-----ALG------ADLVLHSCTKYLNGHSDVVAGV  210 (386)
T ss_dssp             ---GG-----GGT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             ---cc-----ccC------ceEEEEcCcccccCCCCceeEE
Confidence               11     111      2488999999987 47776 75

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.81  E-value=3.4e-19  Score=172.51  Aligned_cols=177  Identities=15%  Similarity=0.223  Sum_probs=139.3

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcC--cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG  217 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G--~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~  217 (360)
                      ++++++++.+.+..       .|.+..|  ..++|+++|+++    |    .++|++|+|+++|+..++.++ + ++||+
T Consensus        11 ~~~v~~a~~~~~~~-------~~~~~~g~~~~~l~~~la~~~----~----~~~v~~~~ggt~al~~~~~~l~~-~~gd~   74 (394)
T 1o69_A           11 GGNELKYIEEVFKS-------NYIAPLGEFVNRFEQSVKDYS----K----SENALALNSATAALHLALRVAGV-KQDDI   74 (394)
T ss_dssp             -CCHHHHHHHHHHH-------TTTSCTTHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred             CHHHHHHHHHHHHc-------CCccCCChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHcCC-CCCCE
Confidence            55678888777764       2555557  899999999998    2    278999999999999999998 7 49999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |+++.|+|+.+...++..|++++.+++++  +|.+|+++|++++++.   ..++++|++++   |||...+   +++|.+
T Consensus        75 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~  143 (394)
T 1o69_A           75 VLASSFTFIASVAPICYLKAKPVFIDCDE--TYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVE  143 (394)
T ss_dssp             EEEESSSCGGGTHHHHHTTCEEEEECBCT--TSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHH
T ss_pred             EEECCCccHHHHHHHHHcCCEEEEEEeCC--CCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHH
Confidence            99999999999999999999999999873  4789999999998751   01488898885   8997665   999999


Q ss_pred             HHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEecc--CcCccccccccC
Q 018147          298 FCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGRYFHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~RvGw  360 (360)
                      +|+++|+++|+||+|. ++.+.+. +..+           +.+   +.+.||  +|.++| .|+||
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~-~~~~-----------~~~---~~~~s~s~~K~l~~-~~~G~  193 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK-ALGT-----------FGE---FGVYSYNGNKIITT-SGGGM  193 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE-ETTS-----------SSS---EEEEECCTTSSSCC-SSCEE
T ss_pred             HHHHcCCEEEEECcCcccceeCCc-cccc-----------ccC---cEEEEEeCCccCCC-CCceE
Confidence            9999999999999999 6666442 1111           112   445555  677765 57886

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.81  E-value=3.2e-19  Score=172.79  Aligned_cols=153  Identities=15%  Similarity=0.188  Sum_probs=124.3

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEEe
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPY  242 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v  242 (360)
                      ....++++.+++++    |  .  +++++++++++|+..++..++ .+||+|+++.|.|..+...    ++..|.+++.+
T Consensus        59 ~~~~~l~~~la~~~----g--~--~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v  129 (389)
T 3acz_A           59 PTVEQFEEMVCSIE----G--A--AGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI  129 (389)
T ss_dssp             HHHHHHHHHHHHHH----T--C--SEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHHHHHHh----C--C--CeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence            34678888888887    3  2  256666677899999999887 4999999999999986665    57789999998


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +.       .|++++++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|..+.+..   
T Consensus       130 ~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~---  190 (389)
T 3acz_A          130 DT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK---  190 (389)
T ss_dssp             CT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC---
T ss_pred             CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC---
Confidence            75       378999998876      7899999999999999998   8999999999999999999999865421   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                        ++     +++      ..++++|+||.+++ +.|+ ||
T Consensus       191 --~~-----~~~------~di~~~S~sK~~~~~~~~~~G~  217 (389)
T 3acz_A          191 --PL-----ELG------ADIALHSVSKYINGHGDVIGGV  217 (389)
T ss_dssp             --GG-----GTT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             --cc-----ccC------CeEEEECChhhccCCCCceeEE
Confidence              11     111      24899999998875 8898 76

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.81  E-value=3.8e-20  Score=181.11  Aligned_cols=210  Identities=11%  Similarity=0.057  Sum_probs=137.7

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|++.+    +.+ .++.+++++.+.+..... ....|     ..++++++++.+.+.++  +++++|++|+|+++|
T Consensus        43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea  114 (433)
T 1zod_A           43 RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEM-----LSRPVVDLATRLANITP--PGLDRALLLSTGAES  114 (433)
T ss_dssp             CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTC-----CCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHH
T ss_pred             CEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-ccccc-----CCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHH
Confidence            345566444    112 388999999888876421 11223     23455666666666555  357899999999999


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc--------------CCeEEEeecCCCCCcC--------CCHHHHHH
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALH--------------GGTLVPYYLDEATGWG--------LETSEVKK  259 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~--------------g~~~~~v~~~~~~~~~--------~d~~~L~~  259 (360)
                      +..+++.+.. ..+|.|++.+|+|+++.......              |...+.++......|+        +|+++|++
T Consensus       115 ~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~  194 (433)
T 1zod_A          115 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD  194 (433)
T ss_dssp             HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHH
Confidence            9999986531 24689999999998755433322              3333333321111122        46899999


Q ss_pred             HHHHHHhcCCCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          260 QLEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++++.  ...++++ ++++| +||||. +.+++++++|.++|++||+++|+||+|.+|.+.+.  ...+. .. +   ..
T Consensus       195 ~l~~~--~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~~~~~-~~-~---~~  264 (433)
T 1zod_A          195 LIDRQ--SSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQ-RD-G---VT  264 (433)
T ss_dssp             HHHHH--CCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHH-HH-T---CC
T ss_pred             HHHhc--CCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--HhHHh-hc-C---CC
Confidence            88752  1114544 55667 588995 57889999999999999999999999999765442  22221 11 1   12


Q ss_pred             CCceEEEEeccCcCccccccccC
Q 018147          338 KDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++     +.||||+|++|+|+||
T Consensus       265 ~d-----i~s~sK~~~~G~~ig~  282 (433)
T 1zod_A          265 PD-----ILTLSKTLGAGLPLAA  282 (433)
T ss_dssp             CS-----EEEECHHHHTTSSCEE
T ss_pred             CC-----EEEecccccCCCCeeE
Confidence            44     3489999999999997

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.81  E-value=6.4e-20  Score=178.74  Aligned_cols=156  Identities=17%  Similarity=0.212  Sum_probs=123.5

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCC
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGG  237 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~  237 (360)
                      .|+. .+..+|++++|+++    |  .. +.|++++| ++|+..++. ++ ++||+|+++.|.|......    ++..|.
T Consensus        63 r~~~-p~~~~l~~~la~~~----g--~~-~~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           63 RSGN-PTRNCLEKAVAALD----G--AK-YCLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             ---C-HHHHHHHHHHHHHH----T--CS-EEEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             CCCC-chHHHHHHHHHHHh----C--CC-cEEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence            4543 45789999999998    2  22 56777776 589999998 77 4999999999999975443    356799


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC-CEEEEccCCCCCc
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENV  316 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~-i~lI~DeaY~~~~  316 (360)
                      +++.++++       |+++|++++++      ++++|++++|+||||.+++   +++|+++|+++| +++|+|++|..+.
T Consensus       132 ~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~  195 (403)
T 3cog_A          132 KISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPY  195 (403)
T ss_dssp             EEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred             EEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccc
Confidence            99998764       78999988875      7999999999999999998   999999999999 9999999999876


Q ss_pred             cCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc--cccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF--HFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~RvGw  360 (360)
                      +...  . .       ++      ..|+++|+||.|+|  ++|+||
T Consensus       196 ~~~~--~-~-------~~------~div~~S~sK~~~g~~~~~~G~  225 (403)
T 3cog_A          196 FQRP--L-A-------LG------ADISMYSATKYMNGHSDVVMGL  225 (403)
T ss_dssp             TCCT--T-T-------TT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             cCCc--c-c-------cC------CeEEEEcChhhccCCCCCeEEE
Confidence            5321  1 0       11      24899999999874  568887

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.81  E-value=5.6e-19  Score=172.27  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=127.5

Q ss_pred             CCCCCCC--cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----H
Q 018147          160 TGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----A  233 (360)
Q Consensus       160 ~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~  233 (360)
                      .+.|+..  .+..++++.+++++    |    .+++++|+|+++|+..++.+++ .+||+|+++.|.|..+...+    +
T Consensus        47 ~~~y~~~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~  117 (412)
T 2cb1_A           47 GYVYARQKDPTAKALEERLKALE----G----ALEAVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLS  117 (412)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTT
T ss_pred             CcCcCCCCChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHH
Confidence            3456543  45778888888877    3    2489999999999999999988 49999999999998766553    4


Q ss_pred             HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      ..|.+++.++.        |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.
T Consensus       118 ~~g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~  180 (412)
T 2cb1_A          118 LMGVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG  180 (412)
T ss_dssp             TTTCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             HcCCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence            47899988865        37888888865      7999999999999999997   9999999999999999999998


Q ss_pred             CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       314 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+.+...    ..     ..+      ..+++.|+||.++ ++.|+||
T Consensus       181 ~~~~~~~----~~-----~~~------~di~~~S~~K~~~~~~~~~G~  213 (412)
T 2cb1_A          181 AAGALCR----PL-----AWG------AHVVVESLTKWASGHGSVLGG  213 (412)
T ss_dssp             TTTTSCC----GG-----GGT------CSEEEEETTTTTTCSSCCCCE
T ss_pred             cccccCC----cc-----ccC------CeEEEECCcccccCCCCcEEE
Confidence            8522111    11     111      2489999999996 5889986

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.81  E-value=1.8e-19  Score=178.12  Aligned_cols=217  Identities=12%  Similarity=0.033  Sum_probs=145.6

Q ss_pred             CCCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+    +.+ -|+.+++++.+.+...     ..|....+..+.++++++++.+.++.. ..++|++|+|++
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGs  135 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGA  135 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHH
Confidence            34568888876    233 3899999999988764     235544556677788888887776522 357999999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCC--------------eEEEeecC--CCCCcCCCH-HHHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG--------------TLVPYYLD--EATGWGLET-SEVKKQLE  262 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~--------------~~~~v~~~--~~~~~~~d~-~~L~~~i~  262 (360)
                      +|+..+++.+.. ..++.|++..++|..+...+...+.              .+..++..  ..+.++.+. +.++..++
T Consensus       136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  215 (453)
T 4ffc_A          136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS  215 (453)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence            999999987652 2458999999999977665554432              34444443  112234442 22322221


Q ss_pred             HHHhc-CCCccEEEEecCCCCccc--CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCC
Q 018147          263 AAKAK-GITVRALVVINPGNPTGQ--VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       263 ~~~~~-g~~~k~iil~~P~NPTG~--~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      ...+. ..+..++++++|.|++|.  +.+.+.+++|.++|++||+++|+||+|.+|.+.+.  ...+...  +   ..+|
T Consensus       216 ~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~a~~~~--~---~~pd  288 (453)
T 4ffc_A          216 RIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WFASEHE--G---IVPD  288 (453)
T ss_dssp             HHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--T---CCCS
T ss_pred             HHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cchhhhc--C---CCcc
Confidence            11110 114567888899888874  44778899999999999999999999999766553  2222211  1   1244


Q ss_pred             ceEEEEeccCcCccccccccC
Q 018147          340 ISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g~~RvGw  360 (360)
                           +.+|||++++|+|+||
T Consensus       289 -----i~t~sK~~~~G~~~G~  304 (453)
T 4ffc_A          289 -----IVTMAKGIAGGMPLSA  304 (453)
T ss_dssp             -----EEEECGGGGTTSSCEE
T ss_pred             -----hHhhhhhhcCCcCeEE
Confidence                 4479999999999997

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.81  E-value=1.8e-19  Score=172.23  Aligned_cols=174  Identities=13%  Similarity=0.194  Sum_probs=140.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---ccCCC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRSEN  215 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l---~~~~g  215 (360)
                      .+|+.+++++.+.+...    .  |.+..+..++++++++++    |  .  +++++|+|+++|+..++.++   + .+|
T Consensus        10 ~~~~~v~~a~~~~~~~~----~--~~~~~~~~~l~~~la~~~----~--~--~~v~~~~ggt~al~~~~~~~~~~~-~~g   74 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSK----Q--LTQGKRSLLFEEALCEFL----G--V--KHALVFNSATSALLTLYRNFSEFS-ADR   74 (375)
T ss_dssp             CCCHHHHHHHHHHHTSS----C--CSSSHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHSSCCC-TTS
T ss_pred             CCCHHHHHHHHHHHHcC----c--ccCChHHHHHHHHHHHHh----C--C--CeEEEeCCHHHHHHHHHHHhcccC-CCC
Confidence            46889999998887642    1  334556889999999998    2  2  28999999999999999999   7 499


Q ss_pred             CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHH
Q 018147          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i  295 (360)
                      |+|+++.|+|+.+...++..|++++.+++++++  .+|+++|++++++      ++++|++++|   ||.+.+   +++|
T Consensus        75 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i  140 (375)
T 2fnu_A           75 NEIITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESV  140 (375)
T ss_dssp             CEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHH
T ss_pred             CEEEECCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHH
Confidence            999999999999999999999999999987653  7899999988865      7888888877   999988   8899


Q ss_pred             HHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccC--cCcccc
Q 018147          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGRYFH  355 (360)
Q Consensus       296 ~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~  355 (360)
                      .++|+++|+++|+|++|........   .       .++ .+++   +.+.|||  |.+++|
T Consensus       141 ~~l~~~~~~~li~D~a~~~~~~~~~---~-------~~~-~~~~---i~~~s~s~~K~~~~g  188 (375)
T 2fnu_A          141 QKLCKKHSLSFLSDSSHALGSEYQN---K-------KVG-GFAL---ASVFSFHAIKPITTA  188 (375)
T ss_dssp             HHHHHHHTCEEEEECTTCTTCEETT---E-------ETT-SSSS---EEEEECCTTSSSCCS
T ss_pred             HHHHHHcCCEEEEECccccCCeECC---e-------ecc-ccCC---eEEEeCCCCCCcccc
Confidence            9999999999999999987543211   0       011 1123   7889999  999765

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.81  E-value=4e-19  Score=175.15  Aligned_cols=210  Identities=15%  Similarity=0.111  Sum_probs=142.6

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+    +. .-|+.+++++.+.+....    +  ....+..+.++++++++.+.++.  ..+ |++|+|+++
T Consensus        48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggse  118 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS----Y--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSE  118 (452)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC----C--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcC----C--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHH
Confidence            4456777665    22 237899999998887532    1  22234556777777777776653  334 999999999


Q ss_pred             HHHHHHHHHcc----C---CCCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCC-C-------
Q 018147          202 AVHMMMQLLIR----S---ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL-E-------  253 (360)
Q Consensus       202 al~~~~~~l~~----~---~gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~-d-------  253 (360)
                      |+..+++.+..    .   ++|.|++..|+|+.+.......+..             +..++....-.+.. |       
T Consensus       119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (452)
T 3n5m_A          119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV  198 (452)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence            99999998762    1   6799999999999876655554432             22333211100111 1       


Q ss_pred             --HHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          254 --TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       254 --~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                        +++|++++++.  ...++++|+++.+ +| ||.++ +++.+++|.++|++||+++|+||+|.+|.+.+.  ...+.  
T Consensus       199 ~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~~~~--  271 (452)
T 3n5m_A          199 ECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK--AFGFM--  271 (452)
T ss_dssp             HHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG--
T ss_pred             HHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc--cchhh--
Confidence              89999998721  1115667777766 89 99766 888899999999999999999999999766553  21111  


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                         ..+..+|     +.+|||++++| +|+||
T Consensus       272 ---~~~~~~d-----i~t~sK~l~~G~~~ig~  295 (452)
T 3n5m_A          272 ---NYDVKPD-----IITMAKGITSAYLPLSA  295 (452)
T ss_dssp             ---GTTCCCS-----EEEECGGGGTTSSCCEE
T ss_pred             ---hcCCCCC-----EEeecccccCCCcceEE
Confidence               1111244     33699999999 99997

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.81  E-value=2.1e-19  Score=173.67  Aligned_cols=198  Identities=12%  Similarity=0.065  Sum_probs=139.2

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|++.+    +.+ .++++++++.+.+.+..    +.|  ..+..++++++++++.+.+|    +++|++|+|+++|
T Consensus        36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea  105 (395)
T 3nx3_A           36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL----HTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTES  105 (395)
T ss_dssp             CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS----CCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHH
T ss_pred             CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc----ccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHH
Confidence            345666655    222 47899999988886532    122  12234566666666666655    5899999999999


Q ss_pred             HHHHHHHHcc------CCCCEEEEcCCCchHHHHHHHHcC-------------CeEEEeecCCCCCcCCCHHHHHHHHHH
Q 018147          203 VHMMMQLLIR------SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLETSEVKKQLEA  263 (360)
Q Consensus       203 l~~~~~~l~~------~~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~L~~~i~~  263 (360)
                      +..+++.+..      .++|.|++.+|+|..+.......+             ..+..++.       .|+++|++++++
T Consensus       106 ~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~  178 (395)
T 3nx3_A          106 IEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNE  178 (395)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCT
T ss_pred             HHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccC
Confidence            9999987752      157999999999987654444333             23444432       278999988865


Q ss_pred             HHhcCCCccEEEEecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceE
Q 018147          264 AKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (360)
Q Consensus       264 ~~~~g~~~k~iil~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  342 (360)
                            ++++|+++.++|++|.+ .+.+++++|.++|++||+++|+||+|.++...+.  ...+...  +   ..++   
T Consensus       179 ------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~~--~---~~~d---  242 (395)
T 3nx3_A          179 ------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFAYEHA--Q---ILPD---  242 (395)
T ss_dssp             ------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--T---CCCS---
T ss_pred             ------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chhHHhc--C---CCCC---
Confidence                  68888888777777776 6788899999999999999999999999755443  2211111  1   1133   


Q ss_pred             EEEeccCcCccccccccC
Q 018147          343 VSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       343 i~~~S~SK~~~g~~RvGw  360 (360)
                        +.||||++++|+|+||
T Consensus       243 --~~t~sK~~~~G~~~G~  258 (395)
T 3nx3_A          243 --IMTSAKALGCGLSVGA  258 (395)
T ss_dssp             --EEEECGGGTTTSCCEE
T ss_pred             --EEEecccccCCCceEE
Confidence              4479999999999997

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.81  E-value=4.3e-19  Score=175.52  Aligned_cols=214  Identities=13%  Similarity=-0.006  Sum_probs=145.6

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+    +. ..++.+++++.+.+.+..    ..|....+..++++++++++.+..+  .+.++|++|+|+++
T Consensus        50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGse  123 (460)
T 3gju_A           50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLA----YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSD  123 (460)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHS----CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHH
Confidence            3456777655    22 237999999988887642    2344444556778888888877643  46789999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCC---CCCcCCC-----
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGLE-----  253 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~~d-----  253 (360)
                      |+..+++.+..       .+++.|++.+|+|..+.......+.             .+..++...   .++++.+     
T Consensus       124 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  203 (460)
T 3gju_A          124 ANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFS  203 (460)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHH
Confidence            99999998863       2569999999999887655544422             234444221   0112334     


Q ss_pred             ---HHHHHHHHHHHHhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHH
Q 018147          254 ---TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (360)
Q Consensus       254 ---~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~  329 (360)
                         +++|++++++..  ..++++|+++.++|++|. +.+.+.+++|.++|++||+++|+||+|.+|.+.+.  ...+ ..
T Consensus       204 ~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~-~~  278 (460)
T 3gju_A          204 QHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT--MFGS-DH  278 (460)
T ss_dssp             HHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHH-HH
T ss_pred             HHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchH-hh
Confidence               578888886421  014555555544667776 67888899999999999999999999999766553  2222 11


Q ss_pred             HHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          330 SRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       330 ~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                       .+   ..+|     +.+|||++++| +|+||
T Consensus       279 -~~---~~pd-----i~t~sK~l~gG~~~lg~  301 (460)
T 3gju_A          279 -YG---IKPD-----LITIAKGLTSAYAPLSG  301 (460)
T ss_dssp             -HT---CCCS-----EEEECGGGTTTSSCCEE
T ss_pred             -cC---CCCC-----eeeeehhhcCCCCCeEE
Confidence             11   1245     33789999998 89997

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.80  E-value=2.8e-19  Score=173.59  Aligned_cols=154  Identities=15%  Similarity=0.164  Sum_probs=123.1

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEE
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVP  241 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~  241 (360)
                      .....++++.+++++    |  .  ++.++++++++|+..++.+++. +||+|+++.|.|+.+...+    ...|.+++.
T Consensus        64 ~~~~~~l~~~la~~~----g--~--~~~i~~~sG~~a~~~~l~~~~~-~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~  134 (398)
T 1gc0_A           64 NPTLNLLEARMASLE----G--G--EAGLALASGMGAITSTLWTLLR-PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH  134 (398)
T ss_dssp             CHHHHHHHHHHHHHH----T--C--SEEEEESSHHHHHHHHHHHHCC-TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred             ChHHHHHHHHHHHHh----C--C--CcEEEECCHHHHHHHHHHHHhc-CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence            345677888888776    3  2  2455555557999999999984 9999999999999887766    567999988


Q ss_pred             eecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 018147          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (360)
Q Consensus       242 v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~  321 (360)
                      ++..       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+... 
T Consensus       135 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~~-  197 (398)
T 1gc0_A          135 VDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRP-  197 (398)
T ss_dssp             ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCG-
T ss_pred             ECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCCc-
Confidence            8753       78999998875      7999999999999999997   99999999999999999999998655321 


Q ss_pred             CCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       322 ~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                          +     ..+      ..+++.|+||.|++ +.|+ ||
T Consensus       198 ----~-----~~~------~d~~~~S~sK~~~~~~~~~~G~  223 (398)
T 1gc0_A          198 ----L-----ELG------ADLVVHSATKYLSGHGDITAGI  223 (398)
T ss_dssp             ----G-----GGT------CSEEEEETTTTTTCSSSCCCEE
T ss_pred             ----h-----hhC------ceEEEECCccccCCCCCCeEEE
Confidence                1     111      24889999999984 8887 75

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.80  E-value=1.7e-19  Score=176.70  Aligned_cols=206  Identities=10%  Similarity=-0.006  Sum_probs=134.2

Q ss_pred             CCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+    +.+ .++.+++++.+.+....   ...|+ .....+|++.+++++    +   .+++|++|+|+++
T Consensus        54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~-~~~~~~l~~~la~~~----~---~~~~v~~~~sGse  122 (434)
T 3l44_A           54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---LYGTP-TALEVKFAKMLKEAM----P---ALDKVRFVNSGTE  122 (434)
T ss_dssp             CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---CCSSC-CHHHHHHHHHHHHHC----T---TCSEEEEESSHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---CCCCC-CHHHHHHHHHHHHhC----C---CCCEEEEeCchHH
Confidence            4557777766    223 48999999998887642   22343 333556666666654    3   5789999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCe-EEEeecCCCCCc--------C----CCHHHHHHHHHHHHhc
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGW--------G----LETSEVKKQLEAAKAK  267 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~-~~~v~~~~~~~~--------~----~d~~~L~~~i~~~~~~  267 (360)
                      ++..+++.+.. .+++.|++..|+|..+...+...+.. ...+.......+        .    -|+++|++++++..  
T Consensus       123 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--  200 (434)
T 3l44_A          123 AVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG--  200 (434)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG--
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCC--
Confidence            99999987752 26789999999998765433332221 111111000000        0    18999999987531  


Q ss_pred             CCCccEEEEecCC-CCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVINPG-NPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                       .++ ++++++|+ |++|.+. +++.+++|.++|++||+++|+||+|.+| ..+.  ...+ ... +   ..+|     +
T Consensus       201 -~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~--~~~~-~~~-~---~~~d-----i  265 (434)
T 3l44_A          201 -HEV-AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY--GGAQ-DLL-G---VTPD-----L  265 (434)
T ss_dssp             -GGE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS--SCHH-HHH-T---CCCS-----E
T ss_pred             -CCE-EEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc--cHHH-HHc-C---CCCC-----e
Confidence             134 45555564 4556555 8889999999999999999999999997 4432  2211 111 1   1244     4


Q ss_pred             eccCcCccccccccC
Q 018147          346 QSVSKGRYFHFFSKW  360 (360)
Q Consensus       346 ~S~SK~~~g~~RvGw  360 (360)
                      .+|||+|++|+|+||
T Consensus       266 ~t~sK~~~~G~~iG~  280 (434)
T 3l44_A          266 TALGKVIGGGLPIGA  280 (434)
T ss_dssp             EEEEGGGGTTSSCEE
T ss_pred             eehhhhhcCCcCeee
Confidence            589999999999997

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.80  E-value=7.9e-20  Score=182.17  Aligned_cols=194  Identities=12%  Similarity=0.028  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHHccCC
Q 018147          140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRSE  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~I~~t~Ga~~al~~~~~~l~~~~  214 (360)
                      .|+.+++++.+.+.+...   .+...|....+..++++.+++++.+.+|...+.  .+|++++|+ +++..++.+++ +|
T Consensus        56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all-~p  133 (483)
T 1rv3_A           56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV-EP  133 (483)
T ss_dssp             CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT-CT
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc-CC
Confidence            388899888777654321   011235555567888988989999988865222  348888888 88888888888 49


Q ss_pred             CCEEEEcCCCchHHHH--------HHHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          215 NDGILCPIPQYPLYSA--------SIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~~--------~~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      ||+|++++|.|..+..        .+...|  .++++++++++ +|.+|+++|++++++.     ++|+|++ +++||+ 
T Consensus       134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~-~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-  205 (483)
T 1rv3_A          134 HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-  205 (483)
T ss_dssp             TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-
T ss_pred             CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccC-CCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-
Confidence            9999999998887643        223334  55666655643 4789999999999843     8999999 999998 


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+++   +++|.++|+++|+++|+|++|. ++++.+.  ..+..   +     +.|   |++.|++|+|+ |.|.||
T Consensus       206 ~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~~~p~---~-----~~d---iv~~s~~K~l~-GprgG~  265 (483)
T 1rv3_A          206 RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF---E-----HCH---VVTTTTHKTLR-GCRAGM  265 (483)
T ss_dssp             SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG---G-----TCS---EEEEESSGGGC-CCSCEE
T ss_pred             CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--CCCCC---C-----CCc---EEEecCcccCC-CCCceE
Confidence            8887   8999999999999999999986 4444432  11111   1     123   78899999984 567776

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.80  E-value=2e-18  Score=173.26  Aligned_cols=191  Identities=12%  Similarity=0.041  Sum_probs=151.9

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC------------
Q 018147          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------------  213 (360)
Q Consensus       146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~------------  213 (360)
                      +.+...++.    ....|....+..++++++++|+.+.+|++.+++++++|+|+++|+..++.++...            
T Consensus       114 e~l~~~~~~----~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~  189 (511)
T 3vp6_A          114 EWLTSTANT----NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAA  189 (511)
T ss_dssp             HHHHHHHCC----CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGG
T ss_pred             HHHHHHhcc----CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCccc
Confidence            444455544    2567888889999999999999999998776789999999999999888776531            


Q ss_pred             -CCCEEEEcCCCchHHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          214 -ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       214 -~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                       +++.|+++.+.|..+...++.+|.   +++.++.+++  +.+|+++|+++|++..++|..+++|++++|+||||.+-+ 
T Consensus       190 ~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~--~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~-  266 (511)
T 3vp6_A          190 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNER--GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP-  266 (511)
T ss_dssp             SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTT--SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC-
T ss_pred             CCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCC--CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc-
Confidence             577899999999999999999998   8999998754  789999999999987666666899999999999999966 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        +++|+++|++||+|+++|++|+....... ++..   .+.++.  .-|   +++.+.+|.+++
T Consensus       267 --l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~~---~~~g~~--~aD---sv~~~~hK~l~~  320 (511)
T 3vp6_A          267 --IQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRH---KLNGIE--RAN---SVTWNPHKMMGV  320 (511)
T ss_dssp             --HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGG---GGTTGG--GCS---EEEECTTSTTCC
T ss_pred             --HHHHHHHHHHcCCEEEEEccchhhHhhCh-hhhh---hccCCc--cCC---EEEECcccccCC
Confidence              99999999999999999999998655332 1111   111111  023   556799998754

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.80  E-value=8e-21  Score=180.76  Aligned_cols=193  Identities=13%  Similarity=0.030  Sum_probs=133.6

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-HHHHHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-SPAVHMMM  207 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga-~~al~~~~  207 (360)
                      +++.++..+|+.+++++.+.+.+....+...|..   ..+..++.+++.+++.+.+|.. ++++|++|+|+ ++|+..++
T Consensus         6 ~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~   84 (360)
T 1w23_A            6 NFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLP   84 (360)
T ss_dssp             ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHH
T ss_pred             eecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHH
Confidence            3444444568999999888765421101222322   3445556666666666666753 46799999999 99999999


Q ss_pred             HHHcc--CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHH-HHHHHHhcCCCccEEEEecCCCCcc
Q 018147          208 QLLIR--SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       208 ~~l~~--~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      ..++.  ++||.|+++.++|..+ ..++..| +++.++++++++ .+|+++|++ ++++      ++|+|++++|+||||
T Consensus        85 ~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~------~~k~v~~~~~~nptG  155 (360)
T 1w23_A           85 MNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANS-YQSIPDFSEFQLNE------NDAYLHITSNNTIYG  155 (360)
T ss_dssp             HHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGT-SCSCCCGGGCCCCT------TEEEEEEESEETTTT
T ss_pred             HHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccC-cCCccchHhhccCC------CCCEEEEeCCCCCcc
Confidence            99884  1356677776666553 3457789 999999875333 378888888 7754      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+++  ++.      +++|+++|+|++|..+..     ..++.    .    + |   +++.|+||.|++. ++||
T Consensus       156 ~~~~--~i~------~~~~~~li~D~a~~~~~~-----~~~~~----~----~-d---i~~~s~sK~~~~~-G~G~  205 (360)
T 1w23_A          156 TQYQ--NFP------EINHAPLIADMSSDILSR-----PLKVN----Q----F-G---MIYAGAQKNLGPS-GVTV  205 (360)
T ss_dssp             EECS--SCC------CCCSSCEEEECTTTTTSS-----CCCGG----G----C-S---EEEEETTTTTSCT-TCEE
T ss_pred             eecc--ccc------ccCCceEEEechhhcCCC-----CcCcc----c----C-C---EEEEEcccccCCC-CcEE
Confidence            9987  332      379999999999987432     11221    1    1 3   7899999998753 4776

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.80  E-value=1.7e-18  Score=173.14  Aligned_cols=187  Identities=11%  Similarity=0.044  Sum_probs=148.7

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-------CCC-----C-EEEEcCCCch
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------SEN-----D-GILCPIPQYP  226 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-------~~g-----d-~Vlv~~P~y~  226 (360)
                      ...|....+..++++++.+++.+.+|.+.+++++++|+|+++|+..++.++..       .+|     + .|+++.+.|+
T Consensus       121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~  200 (504)
T 2okj_A          121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY  200 (504)
T ss_dssp             SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence            34577667778889999999999888765478999999999999999988752       146     6 7999999999


Q ss_pred             HHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          227 LYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       227 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      .+...++.+|.   +++.+|+++  ++.+|+++|++++++..++|.++++|++++|+||||.+.+   +++|+++|+++|
T Consensus       201 s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g  275 (504)
T 2okj_A          201 SIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN  275 (504)
T ss_dssp             HHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence            99999998887   899999864  4789999999999876666667899999999999999977   899999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|+++|++|..+.+... .+...   +.++.  ..|   +++.|++|.+++..++||
T Consensus       276 ~~lhvD~a~~~~~~~~~-~~~~~---~~g~~--~~D---~i~~~~hK~~~~p~~~g~  323 (504)
T 2okj_A          276 LWLHVDAAWGGGLLMSR-KHRHK---LNGIE--RAN---SVTWNPHKMMGVLLQCSA  323 (504)
T ss_dssp             CEEEEEETTGGGGGGCT-TTGGG---GTTGG--GCS---EEEECTTSTTCCCSCCEE
T ss_pred             CEEEEehhhhhHHHhCH-hhHhh---cCCcc--cCC---EEEECchhhcCCCcceEE
Confidence            99999999998776432 12111   11111  123   567789999886667765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.80  E-value=7.7e-19  Score=169.58  Aligned_cols=151  Identities=13%  Similarity=0.118  Sum_probs=124.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH-HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI-AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSEND  216 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i-a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd  216 (360)
                      ..++.+++++.+.+.+..   ...|+  ....+|++++ |+++    |   ..+++++++|+++|+..++.++ + ++||
T Consensus        13 ~~~~~i~~a~~~~~~~~~---~~~~~--~~~~~l~~~~~a~~~----g---~~~~~v~~~sgt~al~~al~~l~~-~~Gd   79 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHI---YTNYG--PINQRFEQTIMSGFF----Q---NRGAVTTVANATLGLMAAIQLKKR-KKGK   79 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTC---CSSSC--HHHHHHHHHHHHHTS----T---TCSEEEEESCHHHHHHHHHHHHSC-TTCC
T ss_pred             CCcHHHHHHHHHHHHcCC---cccCC--HHHHHHHHHHHHHHh----C---CCCeEEEeCCHHHHHHHHHHHcCC-CCcC
Confidence            456778888888887631   11133  3478999999 8886    2   2567899999999999999998 6 5999


Q ss_pred             EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC--ccEEEEecCCCCcccCCCHHHHHH
Q 018147          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~--~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      +|+++.|+|+.+...++..|++++.++++++ +|.+|++++++++...     +  +|+|+   |+||||.+.+   +++
T Consensus        80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~  147 (377)
T 3ju7_A           80 YALMPSFTFPATPLAAIWCGLEPYFIDISID-DWYMDKTVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEE  147 (377)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHH
T ss_pred             EEEECCCCcHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHH
Confidence            9999999999999999999999999999754 5899999999998332     5  88777   7789999988   788


Q ss_pred             HHHHHHHcCCEEEEccCCCCC
Q 018147          295 IVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~  315 (360)
                      |.++|+ +|++||+|++|...
T Consensus       148 i~~la~-~~~~vi~D~a~a~g  167 (377)
T 3ju7_A          148 YEELEK-KGVPVVVDAAPGFG  167 (377)
T ss_dssp             HHHHHH-TTCCBEEECTTCTT
T ss_pred             HHHHHh-cCCEEEEECCCccC
Confidence            888999 99999999999754

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.80  E-value=1.7e-19  Score=170.07  Aligned_cols=149  Identities=15%  Similarity=0.163  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEeecCC
Q 018147          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYLDE  246 (360)
Q Consensus       171 ~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~  246 (360)
                      ++++.+|+++    |  .+ +.|++++| ++|+..++.+++. +||+|+++.|+|+.+...+    +..|.+++.++.  
T Consensus         2 ~l~~~la~~~----g--~~-~~i~~~sG-~~a~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--   70 (331)
T 1pff_A            2 ALEGKIAKLE----H--AE-ACAATASG-MGAIAASVWTFLK-AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--   70 (331)
T ss_dssp             HHHHHHHHHH----T--CS-EEEEESSH-HHHHHHHHHHHCC-TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred             hHHHHHHHHh----C--CC-eEEEeCCh-HHHHHHHHHHhcC-CCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence            5888999987    2  23 55555555 8999999999884 9999999999999987765    457999998875  


Q ss_pred             CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCccCCCCCCCC
Q 018147          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHS  325 (360)
Q Consensus       247 ~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~-~~i~lI~DeaY~~~~~~~~~~~~s  325 (360)
                           .|++++++++++      ++++|++++|+||||.+++   +++|.++|++ +|+++|+|++|....+..     +
T Consensus        71 -----~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~-----~  131 (331)
T 1pff_A           71 -----AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN-----P  131 (331)
T ss_dssp             -----TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-----G
T ss_pred             -----CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC-----h
Confidence                 367888888865      7899999999999999998   9999999999 999999999999755421     1


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccc-ccc-ccC
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFF-SKW  360 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~R-vGw  360 (360)
                      +     ..     + ..+++.|+||.|++ |.| +||
T Consensus       132 ~-----~~-----~-~d~~~~s~~K~~~~~~~r~~G~  157 (331)
T 1pff_A          132 L-----DL-----G-VDIVVHSATKYINGHTDVVAGL  157 (331)
T ss_dssp             G-----GG-----T-CSEEEEETTTTTSSSSSCCCEE
T ss_pred             h-----hc-----C-CcEEEEECccccCCCCCceEEE
Confidence            1     11     1 35899999999875 888 676

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.80  E-value=5.2e-19  Score=173.79  Aligned_cols=159  Identities=16%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcC-CCchHHHHHH----------HHcCCeEE
Q 018147          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSASI----------ALHGGTLV  240 (360)
Q Consensus       172 lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~-P~y~~~~~~~----------~~~g~~~~  240 (360)
                      .++++++++.+.+|......+++++ |+++|+..++.++++ +||+|+++. |.|..+...+          +..|++++
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~-~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~  143 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILR-PGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN  143 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCC-TTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred             hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCC-CCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence            3666666666666644333344455 668999999999884 999999999 9999988665          34799999


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCcccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCcc
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVY  317 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~~~~~~~l~~i~~la~~--~~i~lI~DeaY~~~~~  317 (360)
                      .++++++  +.+|+++|++++++      ++++|+++ +||||+|..++.+++++|+++|++  +|+++|+|++|..+.+
T Consensus       144 ~v~~~~~--~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~  215 (431)
T 3ht4_A          144 AVPLTEG--GLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE  215 (431)
T ss_dssp             ECCBCTT--SSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred             EeCCCCC--CCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence            9998764  68999999999976      79999999 599999999999999999999999  9999999999999876


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      ...  ..       .++   .|   ++++|+||.++|+
T Consensus       216 ~~~--~~-------~~g---~D---i~~~S~sK~lgg~  238 (431)
T 3ht4_A          216 EQE--PC-------HVG---AD---LMAGSLIKNPGGG  238 (431)
T ss_dssp             SCC--GG-------GTT---CS---EEEEETTSGGGTT
T ss_pred             CCC--cc-------ccC---Ce---EEEcCccccCCCC
Confidence            543  11       111   13   8899999997763

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.80  E-value=8.5e-20  Score=177.22  Aligned_cols=151  Identities=15%  Similarity=0.092  Sum_probs=120.2

Q ss_pred             cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEEEe
Q 018147          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPY  242 (360)
Q Consensus       167 ~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v  242 (360)
                      .+..++|+++|+++    |  .+  ++++++++++|+..++. ++ .+||+|+++.|.|+....    .++..|.+++.+
T Consensus        55 ~~~~~lr~~la~~~----g--~~--~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v  124 (393)
T 1n8p_A           55 PNRENLERAVAALE----N--AQ--YGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT  124 (393)
T ss_dssp             HHHHHHHHHHHHHT----T--CS--EEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred             hhHHHHHHHHHHHh----C--CC--cEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEe
Confidence            35788999999887    2  22  45555555999999999 87 499999999999985444    345678999888


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc----CCEEEEccCCCCCccC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE----GLVLLADEVYQENVYV  318 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~----~i~lI~DeaY~~~~~~  318 (360)
                      +++       | ++|++++++      ++++|++++|+||||.+++   +++|+++|+++    |+++|+|++|..+.+.
T Consensus       125 ~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~  187 (393)
T 1n8p_A          125 NDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS  187 (393)
T ss_dssp             SSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred             CCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC
Confidence            764       6 788887765      7999999999999999998   89999999999    9999999999987653


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccc-cC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFS-KW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~Rv-Gw  360 (360)
                       .  .   ..    ++      ..+++.|+||.+++ |+|+ ||
T Consensus       188 -~--~---~~----~~------~di~~~S~sK~~g~~G~rigG~  215 (393)
T 1n8p_A          188 -N--P---LN----FG------ADIVVHSATKYINGHSDVVLGV  215 (393)
T ss_dssp             -C--G---GG----GT------CSEEEEETTTTTTCSSCCCCEE
T ss_pred             -C--H---HH----cC------CeEEEEECcccccCCCCceeEE
Confidence             1  1   11    11      24899999999986 8899 76

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.80  E-value=1.3e-18  Score=173.26  Aligned_cols=201  Identities=13%  Similarity=0.086  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHccC-
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRS-  213 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~I~~t~Ga~~al~~~~~~l~~~-  213 (360)
                      ..+.+.+...++.    ....|....+..++++++++++.+.+|.+.+       ..++++|+|+++|+..++.++... 
T Consensus        88 ~~~~~~~~~~~n~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~  163 (486)
T 1js3_A           88 AMLADMLCGAIGC----IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV  163 (486)
T ss_dssp             HHHHHHHHHHHCC----CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCc----CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHH
Confidence            3344555555533    2556777777899999999999999987632       356899999999998888776420 


Q ss_pred             -C------CC--------E--EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEE
Q 018147          214 -E------ND--------G--ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV  276 (360)
Q Consensus       214 -~------gd--------~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil  276 (360)
                       +      ||        .  |+++.+.|+.+...++..|++++.+++++  ++.+|+++|+++|++..++|..+.+|++
T Consensus       164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~p~~vv~  241 (486)
T 1js3_A          164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVA  241 (486)
T ss_dssp             HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCC--CCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence             1      43        3  88899999999999999999999999863  5789999999999886544444568899


Q ss_pred             ecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       277 ~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      ++|+||||.+-+   +++|+++|+++|+|+++|++|+.+.+... .+....   .++..  -|  .+ ..+++|.+++..
T Consensus       242 ~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~-~~~~~~---~g~~~--ad--si-~~~~hK~~~~p~  309 (486)
T 1js3_A          242 TLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLL---NGVEF--AD--SF-NFNPHKWLLVNF  309 (486)
T ss_dssp             EBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGG---TTGGG--CS--EE-EECHHHHSSCCS
T ss_pred             eCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCH-HHHHHh---cCccc--cC--ee-EEchhhhcCCCc
Confidence            999999998865   99999999999999999999998655321 122211   11110  12  34 467899877656


Q ss_pred             cccC
Q 018147          357 FSKW  360 (360)
Q Consensus       357 RvGw  360 (360)
                      ++||
T Consensus       310 ~~G~  313 (486)
T 1js3_A          310 DCSA  313 (486)
T ss_dssp             SCEE
T ss_pred             ceEE
Confidence            7765

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.80  E-value=5.6e-20  Score=174.98  Aligned_cols=183  Identities=15%  Similarity=0.118  Sum_probs=129.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE-
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG-  217 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~-  217 (360)
                      +.++.+++++.+.+      ....|.+..+..++++.+++++    |  .  +..++++|+++++..++..++. +||. 
T Consensus        26 g~~p~v~~ai~~~~------~~~~~~~~~~~~~l~~~la~~~----~--~--~~~i~~~~g~~a~~~a~~~~~~-~g~~~   90 (359)
T 3pj0_A           26 GVLTEALQNIDDNL------ESDIYGNGAVIEDFETKIAKIL----G--K--QSAVFFPSGTMAQQIALRIWAD-RKENR   90 (359)
T ss_dssp             HHHHHHTTTSCTTC------BCCBTTBSHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHHHH-HHTCC
T ss_pred             CCCHHHHHHHHhhc------ccCcccCCHHHHHHHHHHHHHh----C--C--CcEEEeCCHHHHHHHHHHHHHh-cCCCc
Confidence            44666666655421      2445777778899999999987    2  2  2235557788999999999885 8887 


Q ss_pred             -EEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHH
Q 018147          218 -ILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQ  292 (360)
Q Consensus       218 -Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l  292 (360)
                       |+++.+.|..+.   ......|++++.++.+   ++.+|+++|+++ .+      ++++|++++|+||| |.+++.+++
T Consensus        91 vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l  160 (359)
T 3pj0_A           91 RVAYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEEL  160 (359)
T ss_dssp             EEEECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHH
T ss_pred             EEEEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHH
Confidence             555555544332   2225579999998863   358999999887 33      79999999999998 799999999


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                      ++|+++|++||++||+|++|..+.....  ..+...+..     ..|   +++.|+||++++..
T Consensus       161 ~~l~~~~~~~~~~li~D~a~~~~~~~~~--~~~~~~~~~-----~~d---~~~~s~sK~~~~~~  214 (359)
T 3pj0_A          161 EKISEYCHEQGISLHLDGARLWEITPFY--QKSAEEICA-----LFD---SVYVSFYKGIGGIA  214 (359)
T ss_dssp             HHHHHHHHHHTCEEEEEETTCGGGHHHH--TCCHHHHHT-----TCS---EEEEESSSTTCCSS
T ss_pred             HHHHHHHHHcCCEEEEECcchhcchhhh--CCCHHHhhc-----cCC---EEEEeccccCCCcc
Confidence            9999999999999999999876432111  112323221     123   44569999887653

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.80  E-value=4.8e-19  Score=175.14  Aligned_cols=212  Identities=17%  Similarity=0.116  Sum_probs=144.4

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|++.+    +. .-++++++++.+.+.+..    ..|....+..++++++++++.+.++  .+.++|++|+|+++
T Consensus        49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggse  122 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP----FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSE  122 (459)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS----CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHH
T ss_pred             CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHH
Confidence            3456777665    22 237899999999888742    2344444556778888888887765  45779999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCC-------------eEEEeecCC--C-CCcCCC-----
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE--A-TGWGLE-----  253 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-----  253 (360)
                      |+..+++.+..       .+++.|++..|+|..+.......+.             .+..++...  . +.+ +|     
T Consensus       123 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~  201 (459)
T 4a6r_A          123 SVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFG  201 (459)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHH
Confidence            99999999873       2579999999999987766555432             223333211  0 112 34     


Q ss_pred             ---HHHHHHHHHHHHhcCCCccEEEEecCCC-Cccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          254 ---TSEVKKQLEAAKAKGITVRALVVINPGN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       254 ---~~~L~~~i~~~~~~g~~~k~iil~~P~N-PTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                         +++|++.+++.   +++..++++++|.| ++|. +.+++.+++|.++|++||+++|+||+|.+|.+.+.  ...+. 
T Consensus       202 ~~~~~~le~~i~~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~-  275 (459)
T 4a6r_A          202 VVAARWLEEKILEI---GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE--WFGHQ-  275 (459)
T ss_dssp             HHHHHHHHHHHHHH---CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHH-
T ss_pred             HHHHHHHHHHHHHc---CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHh-
Confidence               78888888642   11233555666654 4555 45889999999999999999999999999766653  22221 


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      . .+   ..+|     +.+|||++++| +|+||
T Consensus       276 ~-~~---~~pd-----i~t~sK~l~gg~~~lg~  299 (459)
T 4a6r_A          276 H-FG---FQPD-----LFTAAKGLSSGYLPIGA  299 (459)
T ss_dssp             H-HT---CCCS-----EEEECGGGGTTSSCCEE
T ss_pred             h-cC---CCCC-----eeehhhhhcCCCCCccc
Confidence            1 11   2245     23689999887 89996

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.80  E-value=4.4e-19  Score=173.10  Aligned_cols=161  Identities=15%  Similarity=0.172  Sum_probs=128.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccCCCCEEEEcC-CCchHHHHH----
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS----  231 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~~gd~Vlv~~-P~y~~~~~~----  231 (360)
                      .+.|+.. |...|++.+|+++    |    .+..++   ++|+++|+..++.++++ +||+|+++. |.|..+...    
T Consensus        53 ~~~y~~~-~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~-~GD~Vl~~~~~~y~~~~~~~~~~  122 (409)
T 3jzl_A           53 GYGYDDE-GRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGILR-PDDELLYITGQPYDTLEEIVGIR  122 (409)
T ss_dssp             TTCTTCH-HHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHCC-TTCEEEECSSSCCTTHHHHHTSS
T ss_pred             CCCCChh-HHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhcC-CCCEEEEeCCCCcHhHHHHHhcc
Confidence            3445554 5778888888877    3    344455   88999999999999985 999999998 999988754    


Q ss_pred             ------HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec----CCCCcccCCCHHHHHHHHHHHHH
Q 018147          232 ------IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       232 ------~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~----P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                            ++..|++++.++++++  +.+|++++++++++      ++++|++++    |+||||.+   .++++|+++|++
T Consensus       123 g~~~~~l~~~G~~~~~v~~~~~--g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~  191 (409)
T 3jzl_A          123 KQGQGSLKDFHIGYSSVPLLEN--GDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKN  191 (409)
T ss_dssp             SSSSSCTGGGTCEEEECCCCTT--SCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHH
T ss_pred             cchhhHHHHcCCEEEEeCCCCC--CCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHh
Confidence                  4567999999998754  57999999999876      799999999    99999977   459999999999


Q ss_pred             --cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccc
Q 018147          302 --EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHF  356 (360)
Q Consensus       302 --~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~  356 (360)
                        +|+++|+|++|..+++...  ..       ..+   .   .|+++|+||.++|+.
T Consensus       192 ~~~~~~livD~a~~~~~~~~~--p~-------~~g---~---Div~~S~sK~lgg~~  233 (409)
T 3jzl_A          192 INPEVIVFVDNCYGEFVEYQE--PP-------EVG---A---DIIAGSLIKNPGGGL  233 (409)
T ss_dssp             HCTTCEEEEECTTCTTTSSCC--SG-------GGT---C---SEEEEETTSGGGTTT
T ss_pred             hCCCCEEEEeCCcccccccCC--cc-------ccC---C---eEEEECccccCCccC
Confidence              9999999999998775432  11       111   1   388999999998753

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.79  E-value=2.2e-18  Score=169.93  Aligned_cols=151  Identities=17%  Similarity=0.230  Sum_probs=120.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  244 (360)
                      ..++++.+++++    |  .+ +.|++++|+ +|+..++..+++ +||+|+++.|.|..+...    ++..|++++.++.
T Consensus       116 ~~~l~~~lA~l~----g--~~-~~v~~~sG~-~Ai~~al~~l~~-~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  186 (445)
T 1qgn_A          116 TVVLEEKISALE----G--AE-STLLMASGM-CASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP  186 (445)
T ss_dssp             HHHHHHHHHHHH----T--CS-EEEEESCHH-HHHHHHHHHHSC-SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred             HHHHHHHHHHHh----C--CC-cEEEeCCHH-HHHHHHHHHHhC-CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence            557888888876    3  22 556666665 999999999885 999999999999987664    4567999999875


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCc-cEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~-k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      +       |+++|++++++      ++ ++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+..    
T Consensus       187 ~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~----  246 (445)
T 1qgn_A          187 A-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK----  246 (445)
T ss_dssp             S-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----
T ss_pred             C-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence            3       79999999987      77 99999999999999998   8899999999999999999998653321    


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCcccc--ccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH--FFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~--~RvGw  360 (360)
                       ++     .++   .|   ++++|+||.++|.  +|+||
T Consensus       247 -~~-----~~g---~D---iv~~S~sK~~gg~gd~~~G~  273 (445)
T 1qgn_A          247 -AL-----ALG---AD---LVLHSATKFLGGHNDVLAGC  273 (445)
T ss_dssp             -TT-----TTT---CS---EEEECTTTTTTCSSSCCCEE
T ss_pred             -cc-----ccC---CE---EEEECCcccccccccceEEE
Confidence             10     111   23   8899999999874  47886

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.79  E-value=4.7e-19  Score=174.40  Aligned_cols=197  Identities=17%  Similarity=0.154  Sum_probs=132.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCC-cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-------
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------  212 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-------  212 (360)
                      |+.+++++.+.+.+..      |... .+..++++++++.+.+.++  .++++|++|+|+++|+..+++.+..       
T Consensus        68 ~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~  139 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD------YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ  139 (449)
T ss_dssp             CHHHHHHHHHHTTTCS------CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhCC------CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            7889999888876531      1111 2334566667777766544  4678999999999999999988752       


Q ss_pred             CCCCEEEEcCCCchHHH-HHHHHcCC------------eEEEeecCC--CCCc-CCC--------HHHHHHHHHHHHhcC
Q 018147          213 SENDGILCPIPQYPLYS-ASIALHGG------------TLVPYYLDE--ATGW-GLE--------TSEVKKQLEAAKAKG  268 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~-~~~~~~g~------------~~~~v~~~~--~~~~-~~d--------~~~L~~~i~~~~~~g  268 (360)
                      .+||+|++.+|+|+.+. ..+...|.            .+..++...  ...| ++|        +++|++++++..  .
T Consensus       140 ~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~  217 (449)
T 3a8u_X          140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--A  217 (449)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--G
T ss_pred             CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--C
Confidence            16799999999998764 34444431            233443321  1111 246        999999987420  0


Q ss_pred             CCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEe
Q 018147          269 ITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (360)
Q Consensus       269 ~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~  346 (360)
                      .+++ +++++| +|+||. +.+++.+++|.++|++||+++|+||+|.+|.+.+.  ...+ ... +   ..+|  ++   
T Consensus       218 ~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~-~~~-~---~~~d--i~---  284 (449)
T 3a8u_X          218 SNIA-AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS--MFGA-DSF-G---VTPD--LM---  284 (449)
T ss_dssp             GGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHH-HHH-T---CCCS--EE---
T ss_pred             CCEE-EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc--chhh-hhc-C---CCCC--EE---
Confidence            1454 455666 567997 55789999999999999999999999988655442  2222 111 1   1245  22   


Q ss_pred             ccCcCcccc-ccccC
Q 018147          347 SVSKGRYFH-FFSKW  360 (360)
Q Consensus       347 S~SK~~~g~-~RvGw  360 (360)
                      ||||++++| +|+||
T Consensus       285 s~sK~l~~G~~~~G~  299 (449)
T 3a8u_X          285 CIAKQVTNGAIPMGA  299 (449)
T ss_dssp             EECGGGGTTSSCCEE
T ss_pred             EEcccccCCCCceEE
Confidence            899999998 99997

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.79  E-value=1e-18  Score=171.27  Aligned_cols=163  Identities=16%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccCCCCEEEEcC-CCchHHHHH------
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS------  231 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~~gd~Vlv~~-P~y~~~~~~------  231 (360)
                      .|+.. |..+|++.+|+++    |    .+..++   ++|+++|+..++.++++ +||+|+++. |.|..+...      
T Consensus        69 ~y~~~-~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~-pGD~Vl~~~~~~y~~~~~~~g~~~~  138 (427)
T 3i16_A           69 GYGDI-GRDSLDAVYARVF----N----TESALVRPHFVNGTHALGAALFGNLR-PGNTMLSVCGEPYDTLHDVIGITEN  138 (427)
T ss_dssp             CTTCH-HHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHHCC-TTCEEEESSSSCCGGGHHHHTCSCC
T ss_pred             CCCHH-HHHHHHHHHHHHh----C----CcceEEeCCCccHHHHHHHHHHHHhC-CCCEEEEeCCCccHHHHHHHhcccc
Confidence            34443 5778888888887    3    233355   78889999999999985 999999999 999987743      


Q ss_pred             -----HHHcCCeEEEeecCCCCCcCCCHHHHHHHHH--HHHhcCCCccEEEEec----CCCCcccCCCHHHHHHHHHHHH
Q 018147          232 -----IALHGGTLVPYYLDEATGWGLETSEVKKQLE--AAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       232 -----~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~--~~~~~g~~~k~iil~~----P~NPTG~~~~~~~l~~i~~la~  300 (360)
                           ++..|++++.++++++  +.+|+++|+++++  +      ++|+|++++    |+||||.+   .++++|+++|+
T Consensus       139 ~~~~~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~------~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~  207 (427)
T 3i16_A          139 SNMGSLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDE------SITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK  207 (427)
T ss_dssp             CSSCCTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCT------TEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred             chHHHHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCC------CCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence                 4567999999998755  4789999999997  4      799999998    99999866   56999999999


Q ss_pred             H--cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc--ccccC
Q 018147          301 K--EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH--FFSKW  360 (360)
Q Consensus       301 ~--~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~--~RvGw  360 (360)
                      +  +|+++|+|++|..+++...  ..       ..+   .   .|+++|+||.++|+  .+.||
T Consensus       208 ~~~~g~~livD~a~~~~~~~~~--p~-------~~g---a---Div~~S~sK~lgg~g~~~gG~  256 (427)
T 3i16_A          208 NIRKDIICFVDNCYGEFMDTKE--PT-------DVG---A---DLIAGSLIKNIGGGIAPTGGY  256 (427)
T ss_dssp             HHCTTSEEEEECTTTTTSSSSC--GG-------GGT---C---SEEEEETTSGGGTTTCCSCEE
T ss_pred             HhCCCCEEEEECCCccccccCC--cc-------ccC---C---eEEEecCcccCCCCCCceEEE
Confidence            9  9999999999998775432  11       111   1   38899999999874  34464

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.79  E-value=3.7e-19  Score=175.65  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=142.9

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~  146 (360)
                      .++.+....+..++.++++++         ..++++..|++-                      +|+..+...  +.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~y----------------------lD~~~~~~~--~~v~~   57 (467)
T 2oqx_A           11 VIEPVKRTTRAYREEAIIKSG---------MNPFLLDSEDVF----------------------IDLLTDSGT--GAVTQ   57 (467)
T ss_dssp             CCCCCCCCCHHHHHHHHHHTT---------SCGGGSCGGGCS----------------------EECSCCSSC--SCCCH
T ss_pred             eecccccccHHHHHHHHHHcC---------CCceeccCCCee----------------------EecccCCCc--HHHHH
Confidence            344444444566666666542         367888877652                      344333111  55666


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC-----C----CE
Q 018147          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-----N----DG  217 (360)
Q Consensus       147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~-----g----d~  217 (360)
                      ++.+.+..    +...|++..+..+|++++++++    |    .+++++|+|+++|+..++.+++. +     |    |+
T Consensus        58 a~~~~l~~----~~~~y~~~~~~~~l~~~la~~~----~----~~~v~~t~~gt~A~~~al~~~~~-~~~~~~G~~~~d~  124 (467)
T 2oqx_A           58 SMQAAMMR----GDEAYSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLIK-KREQEKGLDRSKM  124 (467)
T ss_dssp             HHHHHTTS----CCCCSSSCHHHHHHHHHHHHHH----C----CSEEEEEC--CCSHHHHHHHHHH-HHHHHHCCCTTTC
T ss_pred             HHHHHhcc----CcceeccCchhHHHHHHHHHHh----C----cCcEEEcCCcHHHHHHHHHHHhc-cccccCCCCccce
Confidence            76666543    2346888888999999999998    2    36899999999999999999884 7     8    99


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecC----CC----CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCC
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLD----EA----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLA  288 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~----~~----~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~  288 (360)
                      |++..+.|..|.......|+.++.....    .+    .++.+|+++|++++++..  ..++++|++++|+||| |.+++
T Consensus       125 Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~  202 (467)
T 2oqx_A          125 VAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVS  202 (467)
T ss_dssp             EEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCC
T ss_pred             EEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCC
Confidence            8888656666777777778877654221    11    235689999999998521  1268999999999998 89999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .+++++|+++|++||+++|+|+++.
T Consensus       203 ~~~l~~i~~la~~~gi~li~D~a~~  227 (467)
T 2oqx_A          203 LANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEchhh
Confidence            9999999999999999999996543

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.79  E-value=2.2e-19  Score=177.70  Aligned_cols=210  Identities=12%  Similarity=0.018  Sum_probs=141.4

Q ss_pred             CccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      .+||+..+    ..+ -++.+++++.+.+.+........|     ..+..+++++.+.+.++  ...++|++|+|+++|+
T Consensus        76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA~  148 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGL-----THEPAARLAKLLVDITP--AGLDTVFFSDSGSVSV  148 (457)
T ss_dssp             EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSE-----ECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHH
T ss_pred             EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcccccc-----CCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHHH
Confidence            67888776    222 589999999988877432111122     23344455555555443  4567999999999999


Q ss_pred             HHHHHHHccC------CC-CEEEEcCCCchHHHHHHHHcC--------------CeEEEeecCCCCCcCCCHHHHHHHHH
Q 018147          204 HMMMQLLIRS------EN-DGILCPIPQYPLYSASIALHG--------------GTLVPYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       204 ~~~~~~l~~~------~g-d~Vlv~~P~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      ..+++.+..-      +| +.|++.+++|..+.......+              ..+..++.........|+++|+++++
T Consensus       149 ~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~  228 (457)
T 3tfu_A          149 EVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA  228 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHH
Confidence            9999988631      44 589999999987654444432              12233333222111247899999997


Q ss_pred             HHHhcCCCccEEEEec-CCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCc
Q 018147          263 AAKAKGITVRALVVIN-PGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI  340 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~-P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~  340 (360)
                      +..   .++++|+++. ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|.+.+.  ...+...  +   ..+| 
T Consensus       229 ~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~~a~~~~--~---~~pd-  297 (457)
T 3tfu_A          229 QHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--LFAADHA--G---VSPD-  297 (457)
T ss_dssp             HHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--T---CCCS-
T ss_pred             hCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--hhHhHhc--C---CCce-
Confidence            421   1577777776 799999877 778899999999999999999999999766553  3222211  1   2355 


Q ss_pred             eEEEEeccCcCcccc-ccccC
Q 018147          341 SLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       341 ~~i~~~S~SK~~~g~-~RvGw  360 (360)
                       ++   ||||+++|| +|+||
T Consensus       298 -ii---t~sK~l~gG~~~lG~  314 (457)
T 3tfu_A          298 -IM---CVGKALTGGYLSLAA  314 (457)
T ss_dssp             -EE---EECGGGGTTSSCCEE
T ss_pred             -EE---EEChhhhCCCcceEE
Confidence             23   999999998 69997

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.79  E-value=1.3e-18  Score=171.00  Aligned_cols=200  Identities=12%  Similarity=0.095  Sum_probs=128.6

Q ss_pred             CCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+    +.+ .++.+++++.+.+..... ....|     ..+.++++++.+.+.+|    .++|++|+|+++
T Consensus        64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~sGse  133 (433)
T 1z7d_A           64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI-CSRAF-----FSVPLGICERYLTNLLG----YDKVLMMNTGAE  133 (433)
T ss_dssp             CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC-CCTTS-----EEHHHHHHHHHHHHHHT----CSEEEEESSHHH
T ss_pred             CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC-ccCCc-----CCHHHHHHHHHHHhhcC----CCeEEEeCCHHH
Confidence            4457787764    444 789999999988876421 11123     22334444444444444    579999999999


Q ss_pred             HHHHHHHHHcc--------CCC-CEEEEcCCCchHHHH-HHHHcC------------CeEEEeecCCCCCcCCCHHHHHH
Q 018147          202 AVHMMMQLLIR--------SEN-DGILCPIPQYPLYSA-SIALHG------------GTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       202 al~~~~~~l~~--------~~g-d~Vlv~~P~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      |+..+++.+..        .+| |+|++.+|+|..+.. .+...|            ..++.++.       .|+++|++
T Consensus       134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~  206 (433)
T 1z7d_A          134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEE  206 (433)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHH
Confidence            99999987531        267 999999999987654 333333            23344432       27999999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      +++.     .++++|+++..+|+||.+ ++.+++++|.++|+++|+++|+||+|.++.+.+.  ...+. . .+   ..+
T Consensus       207 ~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~~~~~-~-~~---~~~  274 (433)
T 1z7d_A          207 ELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVH-H-YN---VKP  274 (433)
T ss_dssp             HHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGG-G-GT---CCC
T ss_pred             HhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--chhhH-h-cC---CCC
Confidence            8842     167665544336678975 6888999999999999999999999998655442  22211 1 11   125


Q ss_pred             CceEEEEeccCcCcccc-ccccC
Q 018147          339 DISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      |  ++   ||||++++| +|+||
T Consensus       275 d--i~---t~sK~l~~G~~~~G~  292 (433)
T 1z7d_A          275 D--VI---LLGKALSGGHYPISA  292 (433)
T ss_dssp             S--EE---EECGGGGTTSSCCEE
T ss_pred             C--EE---EECccccCCCCCeEE
Confidence            5  22   899999999 99997

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.79  E-value=1.7e-18  Score=172.09  Aligned_cols=187  Identities=18%  Similarity=0.149  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc---cCC
Q 018147          141 SADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSE  214 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~---~~~  214 (360)
                      .+.+++++.+.+   .  ..+.|.+   .+|..++++++++++.+.+|.+.   .+++|+|+++++..++.++.   .++
T Consensus        79 ~p~v~~~~~~~~---~--~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~  150 (474)
T 1wyu_B           79 NPKLHEEAARLF---A--DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDR  150 (474)
T ss_dssp             CCHHHHHHHHTT---S--SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHH---H--hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhc
Confidence            445666655431   1  2345554   67889999999999999888642   46788999999987555431   137


Q ss_pred             CC-----EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          215 ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       215 gd-----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      ||     +|+++.|+|+.+...++..|++++.+++++  ++.+|+++|++++++      ++++|++++| ||||.+.  
T Consensus       151 Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--  219 (474)
T 1wyu_B          151 GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--  219 (474)
T ss_dssp             TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--
T ss_pred             CCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--
Confidence            87     999999999999999999999999999875  368999999999875      7899999998 6899883  


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-----cccccC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-----HFFSKW  360 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-----~~RvGw  360 (360)
                      +++++|+++|+++|+++|+|++|....++.    .+..    .++   .|   +++.|++|+|++     |.|+||
T Consensus       220 ~~l~~i~~l~~~~g~~li~Dea~~~~~~g~----~~~~----~~g---~d---i~~~s~~K~~~~p~g~gG~~~G~  281 (474)
T 1wyu_B          220 RRILEISRLCKEAGVQLYYDGANLNAIMGW----ARPG----DMG---FD---VVHLNLHKTFTVPHGGGGPGSGP  281 (474)
T ss_dssp             TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT----CCHH----HHT---CS---EEECCTTTTTCCCCTTSCCCCCC
T ss_pred             CCHHHHHHHHHHcCCEEEEeCchhhhhccC----CCcc----cCC---Cc---EEEEeCccccccCCCCCCCCeEE
Confidence            359999999999999999999998765431    1221    122   23   788899998863     469997

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.78  E-value=1.2e-18  Score=170.77  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=125.8

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHccCCCCEEEEcC-CCchHHHH------
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSA------  230 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~---t~Ga~~al~~~~~~l~~~~gd~Vlv~~-P~y~~~~~------  230 (360)
                      +.|+.. |...|++.+|+++    |    .+..++   ++|+++|+..++.++++ |||+|++++ |.|..+..      
T Consensus        69 y~Y~~~-g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all~-pGD~Vl~~~~~~y~~~~~~~g~~~  138 (427)
T 3hvy_A           69 YGYNDI-GRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNLR-PNDTMMSICGMPYDTLHDIIGMDD  138 (427)
T ss_dssp             TCTTCH-HHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTCC-TTCEEEECSSSCCGGGHHHHTCCT
T ss_pred             CCCCch-hHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhcC-CCCEEEEeCCCCchhHHHHhcccc
Confidence            345544 5788888888877    3    344466   78889999999999985 999999999 99987763      


Q ss_pred             -----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec----CCCCcccCCCHHHHHHHHHHHHH
Q 018147          231 -----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       231 -----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~----P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                           .++..|++++.+++ +  ++.+|++++++++++    ..++|+|++++    |+||||.+   .++++|+++|++
T Consensus       139 ~~~~~~l~~~G~~~~~v~~-~--~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~  208 (427)
T 3hvy_A          139 SKKVGSLREYGVKYKMVDL-K--DGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIRE  208 (427)
T ss_dssp             TCCSCCTGGGTCEEEECCC-B--TTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHH
T ss_pred             chhhhHHHHcCCEEEEecC-C--CCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHH
Confidence                 34567999999988 2  358999999999983    01799999999    99999866   569999999999


Q ss_pred             --cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          302 --EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       302 --~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                        +|+++|+|++|..+++...  .  +     ..+   .   .|+++|+||.++|+
T Consensus       209 ~~~g~~livD~a~~~~~~~~~--p--~-----~~g---a---Div~~S~sK~lgg~  249 (427)
T 3hvy_A          209 VNENVIVFVDNCYGEFVEEKE--P--T-----DVG---A---DIIAGSLIKNIGGG  249 (427)
T ss_dssp             HCSSSEEEEECTTCTTTSSSC--G--G-----GGT---C---SEEEEETTSGGGTT
T ss_pred             hCCCCEEEEECCccccccCCC--C--c-----ccC---C---eEEEECCccccccc
Confidence              8999999999998775432  1  1     111   1   38899999999875

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.78  E-value=2.3e-18  Score=169.67  Aligned_cols=184  Identities=13%  Similarity=0.070  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---HccCCCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LIRSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~---l~~~~gd  216 (360)
                      .|+.+++++.+.+....     .|+   +..++++++++++.++++   .+++|++|+|+++|+..+++.   +.  .++
T Consensus        74 ~~~~v~~a~~~~~~~~~-----~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~--~~~  140 (453)
T 2cy8_A           74 GHPRVNAAIAEALSHGV-----QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFT--GRR  140 (453)
T ss_dssp             TCHHHHHHHHHHHTTTC-----SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHH--CCC
T ss_pred             CCHHHHHHHHHHHHhCC-----CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh--CCC
Confidence            57889999988886521     222   356899999999988764   578999999999999999988   65  457


Q ss_pred             EEEEcCCCchHHHHHHHH-----------cCCe------EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          217 GILCPIPQYPLYSASIAL-----------HGGT------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~~~~~-----------~g~~------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      .|++.+|+|+++...+..           .|..      ++.++.       .|+++|++++++..   .++++| +++|
T Consensus       141 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~v-i~ep  209 (453)
T 2cy8_A          141 MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG---SDIAAF-IAEP  209 (453)
T ss_dssp             EEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG---GGEEEE-EECS
T ss_pred             EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC---CCEEEE-EECC
Confidence            899999999876553322           1221      222221       38999999997521   145554 5555


Q ss_pred             -CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccc
Q 018147          280 -GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF  357 (360)
Q Consensus       280 -~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~R  357 (360)
                       +||||.+. +++++++|.++|++||+++|+||+|.++ +.+.  ...+ .   ..+ ..+|     +.||||++++|+|
T Consensus       210 ~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~-~---~~~-~~~d-----i~s~sK~l~~G~~  276 (453)
T 2cy8_A          210 VGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN--HGMQ-A---LLD-VQPD-----LTCLAKASAGGLP  276 (453)
T ss_dssp             SEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT--THHH-H---HHT-CCCS-----EEEEEGGGGTTSS
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc--hhhh-H---HhC-CCCc-----EEEEChhhhCCcc
Confidence             57799765 6999999999999999999999999987 4432  1111 1   111 1245     2389999999999


Q ss_pred             ccC
Q 018147          358 SKW  360 (360)
Q Consensus       358 vGw  360 (360)
                      +||
T Consensus       277 ~G~  279 (453)
T 2cy8_A          277 GGI  279 (453)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            997

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.78  E-value=2.4e-18  Score=169.37  Aligned_cols=200  Identities=11%  Similarity=0.081  Sum_probs=138.6

Q ss_pred             CCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+    +.+ .++++++++.+.+..... ....|. .....++++.+++++    |    .++|++++|+++
T Consensus        75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~-~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGse  144 (439)
T 2oat_A           75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL-TSRAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVE  144 (439)
T ss_dssp             CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC-CCTTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHH
T ss_pred             CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc-ccCccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHH
Confidence            4567888775    334 789999999988876432 111232 223566677666665    3    578999999999


Q ss_pred             HHHHHHHHHcc--------CCC-CEEEEcCCCchHHH-HHHHHcC------------CeEEEeecCCCCCcCCCHHHHHH
Q 018147          202 AVHMMMQLLIR--------SEN-DGILCPIPQYPLYS-ASIALHG------------GTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       202 al~~~~~~l~~--------~~g-d~Vlv~~P~y~~~~-~~~~~~g------------~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      |+..+++.+..        .+| |.|++.+|+|+.+. ..+...|            ..++.++.       .|+++|++
T Consensus       145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~  217 (439)
T 2oat_A          145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER  217 (439)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHH
Confidence            99999988641        256 89999999997654 3444434            35555553       27899999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~  338 (360)
                      +++.     .++++|+++..+|++|. +++.+++++|.++|++||+++|+||+|.++.+.+.  ...+. . .+   ..+
T Consensus       218 ~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~--~~~~~-~-~~---~~~  285 (439)
T 2oat_A          218 ALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVD-Y-EN---VRP  285 (439)
T ss_dssp             HTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGG-G-GT---CCC
T ss_pred             HhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc--chhHH-H-hC---CCC
Confidence            8852     15655554433567896 56889999999999999999999999988655442  22111 1 11   125


Q ss_pred             CceEEEEeccCcCcccc-ccccC
Q 018147          339 DISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       339 ~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      |  ++   ||||++++| +|+||
T Consensus       286 D--i~---t~sK~l~~G~~~~G~  303 (439)
T 2oat_A          286 D--IV---LLGKALSGGLYPVSA  303 (439)
T ss_dssp             S--EE---EECGGGGTTSSCCEE
T ss_pred             c--EE---EecccccCCCCCeEE
Confidence            5  22   999999999 99997

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.78  E-value=1.6e-18  Score=170.84  Aligned_cols=210  Identities=11%  Similarity=0.072  Sum_probs=133.0

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+    .. ..++.+++++.+.+....     .|....+..+.++++++++.+.++  ...++|++|+|+++
T Consensus        43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse  115 (448)
T 3dod_A           43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA-----HSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAE  115 (448)
T ss_dssp             SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS-----CCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc-----CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHH
Confidence            3446666654    11 237899999998886532     233444566788888888888764  34589999999999


Q ss_pred             HHHHHHHHHccC---C----CCEEEEcCCCchHHHHHHHHcCCe-------------EEEeecCCCCCcCC---------
Q 018147          202 AVHMMMQLLIRS---E----NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL---------  252 (360)
Q Consensus       202 al~~~~~~l~~~---~----gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~---------  252 (360)
                      |+..+++.+...   +    +|+|++..|+|+.+.......+..             +..++..  ..|..         
T Consensus       116 A~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  193 (448)
T 3dod_A          116 AMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECR  193 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhh
Confidence            999999988631   4    499999999998876544443321             2223322  12222         


Q ss_pred             --CHHHHHHHHHHHHhcCCCccEEEEecCC-CCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          253 --ETSEVKKQLEAAKAKGITVRALVVINPG-NPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       253 --d~~~L~~~i~~~~~~g~~~k~iil~~P~-NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                        |+++|+++++...   .++++|++..++ |++| .+.+.+.+++|.++|++||+++|+||+|.+|.+.+.  ...+..
T Consensus       194 ~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~a~~~  268 (448)
T 3dod_A          194 DQCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK--MFACEH  268 (448)
T ss_dssp             HHHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG
T ss_pred             HHHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--hhhhhh
Confidence              4888999887321   145555554445 7787 456778899999999999999999999999766553  222111


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                        .+   ..++     +.+|||++++| +|+||
T Consensus       269 --~~---~~~d-----i~t~sK~l~~G~~~ig~  291 (448)
T 3dod_A          269 --EN---VQPD-----LMAAGKGITGGYLPIAV  291 (448)
T ss_dssp             --GT---CCCS-----EEEECGGGGTTSSCCEE
T ss_pred             --cC---CCCC-----EEEecccccCCcCceEE
Confidence              11   1244     33789999999 69997

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.78  E-value=1.6e-18  Score=169.36  Aligned_cols=199  Identities=10%  Similarity=0.016  Sum_probs=132.5

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|++.+    +.+ .|+.+++++.+.+....   .  |..   ..++++++++++.+.++   .+++|++|+|+++|
T Consensus        52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~--~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea  120 (427)
T 3fq8_A           52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT---S--FGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEA  120 (427)
T ss_dssp             CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---C--CSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHH
T ss_pred             CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC---C--cCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHH
Confidence            345555544    122 48999999998887632   2  322   34567777777777665   57899999999999


Q ss_pred             HHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CC-------------------eEEEeecCCCCCcCCCHHHHHHHH
Q 018147          203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------------TLVPYYLDEATGWGLETSEVKKQL  261 (360)
Q Consensus       203 l~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~~d~~~L~~~i  261 (360)
                      +..+++.... ..++.|++..|+|+.+...+... |.                   .++.++..       |+++|++++
T Consensus       121 ~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l  193 (427)
T 3fq8_A          121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALF  193 (427)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHH
Confidence            9999954321 24589999999997644322111 11                   12233221       799999998


Q ss_pred             HHHHhcCCCccEEEEecCCCCcccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCc
Q 018147          262 EAAKAKGITVRALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI  340 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P~NPTG~~~~-~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~  340 (360)
                      ++.   ..++++|+++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.++ +.+.  ....    . .....+| 
T Consensus       194 ~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~~----~-~~~~~~d-  261 (427)
T 3fq8_A          194 AEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY--GGVQ----E-KFGVTPD-  261 (427)
T ss_dssp             HHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--THHH----H-HTTCCCS-
T ss_pred             HhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chhh----H-hcCCCCC-
Confidence            752   114555555555677787776 556999999999999999999999987 4432  1111    1 1111244 


Q ss_pred             eEEEEeccCcCccccccccC
Q 018147          341 SLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       341 ~~i~~~S~SK~~~g~~RvGw  360 (360)
                          +.||||+|++|+|+||
T Consensus       262 ----i~t~sK~~~~G~~~G~  277 (427)
T 3fq8_A          262 ----LTTLGKIIGGGLPVGA  277 (427)
T ss_dssp             ----EEEECGGGGTTSSCEE
T ss_pred             ----hhhhhhhhhCCcceEE
Confidence                4689999999999997

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.78  E-value=3.2e-18  Score=169.00  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=145.2

Q ss_pred             CCCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+    +.+ -++.+++++.+.+...     ..|....+..+.++++++++.+..+. ...++|++|+|++
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGs  132 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-----THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSALFNSGS  132 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-----SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEEESSHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-----ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEEeCcHH
Confidence            34568888876    233 3899999999888653     23554455667888888888877652 1357899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCC--------------eEEEeecCCC--------CCcC---CCH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG--------------TLVPYYLDEA--------TGWG---LET  254 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~--------------~~~~v~~~~~--------~~~~---~d~  254 (360)
                      +|+..+++.+.. ..++.|++..++|..+...+...+.              .+..++....        +.-+   -++
T Consensus       133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  212 (451)
T 3oks_A          133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA  212 (451)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence            999999987652 2458999999999977665554422              3444544310        0001   124


Q ss_pred             HHHHHHHHHHHhcCCCccEEEEecCCCCcccC--CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHh
Q 018147          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQV--LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS  332 (360)
Q Consensus       255 ~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~--~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~  332 (360)
                      +.+++.+++..  +.+..++++++|.|++|.+  .+.+.+++|.++|++||+++|+||+|.++.+.+.  ...+...  +
T Consensus       213 ~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~~--~  286 (451)
T 3oks_A          213 KRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA--MFACEHE--G  286 (451)
T ss_dssp             HHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--T
T ss_pred             HHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc--chhhhhc--C
Confidence            45555555321  1134577778887777644  3667799999999999999999999999766553  2222111  1


Q ss_pred             hCCCCCCceEEEEeccCcCccccccccC
Q 018147          333 MGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       333 ~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                         ..+|     +-||||++++|+|+||
T Consensus       287 ---~~pd-----i~t~sK~l~~G~~iG~  306 (451)
T 3oks_A          287 ---IDPD-----LIVTAKGIAGGLPLSA  306 (451)
T ss_dssp             ---CCCS-----EEEECGGGGTTSSCEE
T ss_pred             ---CCCC-----eeeehhhhhCCcceEE
Confidence               1245     2389999999999997

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.78  E-value=7.3e-18  Score=169.15  Aligned_cols=185  Identities=15%  Similarity=0.128  Sum_probs=146.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc-------cCCCC------EEEEcCCCch
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSEND------GILCPIPQYP  226 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~-------~~~gd------~Vlv~~P~y~  226 (360)
                      ...|....+..++.+.+.+++.+.+|.+  ++++++|+|+++|+..++.++.       ..+||      .|+++.+.|+
T Consensus       137 ~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~  214 (515)
T 2jis_A          137 QYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHY  214 (515)
T ss_dssp             TTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred             CCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccH
Confidence            4467777778888888888888888864  7899999999999988888763       11465      8999999999


Q ss_pred             HHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          227 LYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       227 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      .+...++.+|.   +++.+|+++  ++.+|+++|++++++...+|.++++|++++|+||||.+.+   +++|+++|+++|
T Consensus       215 s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g  289 (515)
T 2jis_A          215 SIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG  289 (515)
T ss_dssp             HHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence            99999999888   899999874  4689999999999876666666899999999999999988   899999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|+++|++|..+.+..+ .+..   .+.++.  ..|   +++.|++|.+++..++||
T Consensus       290 ~~l~vD~a~~~~~~~~~-~~~~---~~~g~~--~aD---~v~~s~hK~l~~p~g~G~  337 (515)
T 2jis_A          290 LWLHVDAAWGGSVLLSQ-THRH---LLDGIQ--RAD---SVAWNPHKLLAAGLQCSA  337 (515)
T ss_dssp             CEEEEEETTGGGGGGCT-TTGG---GGTTGG--GCS---EEEECTTSTTCCCSCCEE
T ss_pred             CeEEEehhhhhHHHhCh-hhHh---hcCCCc--cCC---EEEECcccccCCCCCeeE
Confidence            99999999998776432 1211   112211  123   678899998876556664

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.78  E-value=1.5e-18  Score=168.46  Aligned_cols=191  Identities=12%  Similarity=0.021  Sum_probs=117.4

Q ss_pred             CHHHHHHHHHHHHcCCCCC--CCCCCCCcCcHHHHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          141 SADSIERAWQILDQIPGRA--TGAYSHSQGIKGLRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~--~~~Y~~~~G~~~lr~~ia-~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      |+.+++++.+.+.+....+  ...|.......+.++.++ +.+.+.+|.  +. ..++++|+++++..++.+++ ++||+
T Consensus        45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~~~al~~~~-~~gd~  120 (425)
T 3ecd_A           45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQANGAVMLALA-KPGDT  120 (425)
T ss_dssp             CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHHHHHHHHcc-CCCCE
Confidence            8889988877764321100  011111111112333333 555554452  22 23458888999999999998 49999


Q ss_pred             EEEcCCCchH---HHHHHHHcCC--eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHH
Q 018147          218 ILCPIPQYPL---YSASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       218 Vlv~~P~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                      |+++.|+|+.   +...+...|.  +++.++.+++ +|.+|+++|++++++.     ++++|++++|+||+  ..+   +
T Consensus       121 Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l  189 (425)
T 3ecd_A          121 VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD-TMLIDYDQVEALAQQH-----KPSLIIAGFSAYPR--KLD---F  189 (425)
T ss_dssp             EEEECC------------------CEEEEECCCTT-TSSCCHHHHHHHHHHH-----CCSEEEEECSCCCS--CCC---H
T ss_pred             EEEcccccccceecchhhhhcccceeeeecCCCcc-cCccCHHHHHHHHhhc-----CCcEEEEccccCCC--cCC---H
Confidence            9999999987   3333334454  5556665543 5789999999999753     79999999999975  333   7


Q ss_pred             HHHHHHHHHcCCEEEEccCC-CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          293 RAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ++|.++|+++|+++|+||+| .++.+.+.  +.+....        .|   |++.|+||++ +|.|.||
T Consensus       190 ~~i~~l~~~~~~~li~De~~~~g~~~~~~--~~~~~~~--------~d---i~~~s~sK~l-~g~~~g~  244 (425)
T 3ecd_A          190 ARFRAIADSVGAKLMVDMAHIAGVIAAGR--HANPVEH--------AH---VVTSTTHKTL-RGPRGGF  244 (425)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGGGT--------CS---EEEEESSGGG-CCCSCEE
T ss_pred             HHHHHHHHHcCCEEEEECcChHhhhhccc--ccCchhc--------Cc---EEEecCCccc-CCCCcEE
Confidence            89999999999999999995 44444432  2221111        23   7899999999 5568887

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.78  E-value=2e-18  Score=169.54  Aligned_cols=146  Identities=14%  Similarity=0.158  Sum_probs=118.5

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCCeEEEee
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYY  243 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~  243 (360)
                      ...+|++.+|+++    |    .+..++++++++|+..++.++++ +||+|+++.|.|..+..    .++..|++++.++
T Consensus        83 ~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~al~~-~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~  153 (430)
T 3ri6_A           83 TVEDLEQRLKNLT----G----ALGVLALGSGMAAISTAILTLAR-AGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD  153 (430)
T ss_dssp             HHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHhC-CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence            4677788887776    3    23355666668999999999985 99999999999998877    6678899999987


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+       |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+...   
T Consensus       154 ~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~~---  214 (430)
T 3ri6_A          154 VM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLEA---  214 (430)
T ss_dssp             TT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCCG---
T ss_pred             CC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCCh---
Confidence            65       78999998876      7999999999999999998   88999999999999999999987544211   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                             ...+      ..++++|+||.++|
T Consensus       215 -------~~~g------~div~~S~sK~l~g  232 (430)
T 3ri6_A          215 -------KRLG------VDIEVLSSTKFISG  232 (430)
T ss_dssp             -------GGGT------CSEEEEECCCEEET
T ss_pred             -------HHcC------CEEEEECCcccccC
Confidence                   0111      13889999999875

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.78  E-value=1.3e-18  Score=170.28  Aligned_cols=206  Identities=15%  Similarity=0.073  Sum_probs=134.1

Q ss_pred             CCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..++||+..+    +.+ .|+.+++++.+.+.+..   ...| +.....+|++.+++++    +   .+++|++|+|+++
T Consensus        52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~~~~-~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gse  120 (429)
T 3k28_A           52 GNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT---SFGA-PTEIENKLAKLVIERV----P---SIEIVRMVNSGTE  120 (429)
T ss_dssp             CCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS---CCSS-CCHHHHHHHHHHHHHS----T---TCSEEEEESSHHH
T ss_pred             CCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc---CcCC-CCHHHHHHHHHHHHhC----C---CCCEEEEeCChHH
Confidence            4557777766    233 48999999998887742   2233 3445667777777664    2   4789999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-CCeEEEeecCCCCCcC------------CCHHHHHHHHHHHHhc
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWG------------LETSEVKKQLEAAKAK  267 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~------------~d~~~L~~~i~~~~~~  267 (360)
                      ++..+++.+.. .+++.|++..|+|..+...+... |..+..+.......+.            -|+++|+++++...  
T Consensus       121 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--  198 (429)
T 3k28_A          121 ATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG--  198 (429)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG--
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC--
Confidence            99999987752 25789999999997654332222 2211111111111110            17999999987531  


Q ss_pred             CCCccEEEEecCC-CCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVINPG-NPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                       .++ ++++++|. |++|.+. +++.+++|.++|++||+++|+||+|.+| ..+.  .... ..   .+ ..+|     +
T Consensus       199 -~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~~-~~---~~-~~~d-----i  263 (429)
T 3k28_A          199 -DDI-ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY--NCGQ-GY---YG-VTPD-----L  263 (429)
T ss_dssp             -GGE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST--THHH-HH---HT-CCCS-----E
T ss_pred             -CCE-EEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chHH-HH---hC-CCCc-----e
Confidence             134 45555664 4455554 5788999999999999999999999997 4432  1111 11   11 1244     3


Q ss_pred             eccCcCccccccccC
Q 018147          346 QSVSKGRYFHFFSKW  360 (360)
Q Consensus       346 ~S~SK~~~g~~RvGw  360 (360)
                      .+|||+|++|+|+||
T Consensus       264 ~t~sK~~~~G~~iG~  278 (429)
T 3k28_A          264 TCLGKVIGGGLPVGA  278 (429)
T ss_dssp             EEECGGGGTTSCCEE
T ss_pred             ehhhhhhcCCCCeEE
Confidence            579999999999997

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.78  E-value=4.4e-19  Score=168.80  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC--EEEEcCCCchHHHH---HHHH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--GILCPIPQYPLYSA---SIAL  234 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd--~Vlv~~P~y~~~~~---~~~~  234 (360)
                      ...|++..+..+|++++++++    |  .  +..++++|+++++..++++++. +||  .|+++.++|..+..   ....
T Consensus        40 ~~~y~~~~~~~~l~~~la~~~----~--~--~~~i~~~~G~~a~~~al~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~  110 (357)
T 3lws_A           40 SDQYGTGAIIEPFEQKFADVL----G--M--DDAVFFPSGTMAQQVALRIWSD-ETDNRTVAYHPLCHLEIHEQDGLKEL  110 (357)
T ss_dssp             CEETTEETTHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred             cccccCChHHHHHHHHHHHHh----C--C--CcEEEecCcHHHHHHHHHHHhh-cCCCcEEEecccceeeeeccchhhhc
Confidence            456887778899999999987    2  2  3334557778899999999885 888  67777766554332   4556


Q ss_pred             cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 018147          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (360)
Q Consensus       235 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~~la~~~~i~lI~DeaY~  313 (360)
                      .|++++.++.+   ++.+|+++|+++  .      ++++|++++||||| |.+++.+++++|+++|++||++||+|++|.
T Consensus       111 ~g~~~~~v~~~---~~~~d~~~l~~~--~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~  179 (357)
T 3lws_A          111 HPIETILVGAA---DRLMTLDEIKAL--P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL  179 (357)
T ss_dssp             SSCEEEECSCT---TSCCCHHHHHTC--C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             cCcEEEEecCC---CCCcCHHHHhcC--c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence            79999888742   347999999876  1      48899999999998 999999999999999999999999999987


Q ss_pred             CC--ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          314 EN--VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       314 ~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ..  .+.+    .+...+..     ..+   +++.|+||+|++
T Consensus       180 ~~~~~~~~----~~~~~~~~-----~~d---~~~~s~sK~~~~  210 (357)
T 3lws_A          180 FEMLPYYE----KTAAEIAG-----LFD---SIYISFYKGLGG  210 (357)
T ss_dssp             HHHHHHHT----CCHHHHHT-----TSS---EEEEESSSTTCC
T ss_pred             hhhhhhcC----CChHHHHh-----cCC---EEEEeccccCCC
Confidence            21  1112    12222221     123   347899999843

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.78  E-value=4.7e-18  Score=170.14  Aligned_cols=196  Identities=11%  Similarity=0.030  Sum_probs=152.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEE---EcCChHHHHHHHHHHHccCC-
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF---LTDGASPAVHMMMQLLIRSE-  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~---~t~Ga~~al~~~~~~l~~~~-  214 (360)
                      ..++.+.+++.+.+...    ...|....+..++++.+++++.+.+|.+.++++++   +|+|+++++..++.++.. + 
T Consensus        67 ~~~~~v~~~l~~~~~~~----~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~-~~  141 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKN----YVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKR-KW  141 (502)
T ss_dssp             CCCHHHHHHHHHTTTCB----TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHH-HH
T ss_pred             CCCHHHHHHHHHHhccC----CCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHH-HH
Confidence            45777777777766543    33344555678899999999999999775566654   489999999999888763 4 


Q ss_pred             -------CC-----EEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          215 -------ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       215 -------gd-----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                             |+     .|+++.++|..|...++..|++++.++++++ ++.+|+++|++++++      ++++|++++|+||
T Consensus       142 ~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~------~t~~v~~~~~~n~  214 (502)
T 3hbx_A          142 QNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPQQAVDMVDE------NTICVAAILGSTL  214 (502)
T ss_dssp             HHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTT-BCSCCHHHHHHHCCT------TEEEEEEEBSCTT
T ss_pred             hHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCC-cCcCCHHHHHHHHhh------CCEEEEEecCCCC
Confidence                   76     9999999999999999999999999998753 478999999999977      7899999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHc------CCEEEEccCCCCCcc---CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          283 TGQVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~------~i~lI~DeaY~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      ||.+.+   +++|.++|+++      |+++++|++|..++.   .+.. ...+.         .+++ -++..|..|.+.
T Consensus       215 tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~-~~~~~---------~~~~-D~v~~s~hK~l~  280 (502)
T 3hbx_A          215 NGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL-EWDFR---------LPLV-KSINVSGHKYGL  280 (502)
T ss_dssp             TCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC-CCSTT---------STTE-EEEEEETTTTTC
T ss_pred             CCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccc-ccccC---------CCCc-eEEEECcccccC
Confidence            999988   88889999998      999999999997642   2211 11110         1232 355678889887


Q ss_pred             ccccccC
Q 018147          354 FHFFSKW  360 (360)
Q Consensus       354 g~~RvGw  360 (360)
                      +..++||
T Consensus       281 ~p~g~G~  287 (502)
T 3hbx_A          281 VYAGIGW  287 (502)
T ss_dssp             CCSSCEE
T ss_pred             CCCCeEE
Confidence            7777775

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.77  E-value=8e-18  Score=168.06  Aligned_cols=214  Identities=13%  Similarity=0.135  Sum_probs=157.9

Q ss_pred             CCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          127 HPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       127 ~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      .|.++++..++ ..++.+++++.....+.   ....|....+..++.+.+.+++.+.+|.+ ..+++++|+|+++++..+
T Consensus       100 ~~~yl~~~~~~-~~~~~v~~~~~~~~~n~---~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~a  174 (497)
T 2qma_A          100 HPDCIAHLHTP-PLMPAVAAEAMIAALNQ---SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMG  174 (497)
T ss_dssp             STTBCSSSCCC-CBHHHHHHHHHHHHHCC---CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHH
T ss_pred             CCCeeEeCCCC-CcHHHHHHHHHHHhhcc---cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHH
Confidence            34555554443 45677777765544432   24456666678889999999999988864 237899999999999998


Q ss_pred             HHHH----cc--------CC------CC-EEEEcCCCchHHHHHHHHcCC---eEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          207 MQLL----IR--------SE------ND-GILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       207 ~~~l----~~--------~~------gd-~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      +.++    +.        .+      |+ .|+++.+.|..+...++..|.   +++.+|+++  ++.+|+++|++++++.
T Consensus       175 l~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~  252 (497)
T 2qma_A          175 LMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQA  252 (497)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHH
Confidence            8873    20        02      46 799999999999999998876   799999864  4789999999999875


Q ss_pred             HhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       265 ~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                      .+++.++.+|++++++||||.+-+   +++|+++|+++|+|+++|++|..+.+...  +   .....++.  ..|   ++
T Consensus       253 ~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~---~~~~~gi~--~~D---~i  319 (497)
T 2qma_A          253 KAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--H---KSRLKGVE--RAH---SI  319 (497)
T ss_dssp             HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--T---GGGGTTGG--GCS---EE
T ss_pred             HHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--c---hHhhcCcc--cCC---EE
Confidence            444433558888899999999877   89999999999999999999998765332  1   11112221  133   56


Q ss_pred             EeccCcCccccccccC
Q 018147          345 FQSVSKGRYFHFFSKW  360 (360)
Q Consensus       345 ~~S~SK~~~g~~RvGw  360 (360)
                      +.|++|.+++..++||
T Consensus       320 ~~s~hK~l~~p~~~G~  335 (497)
T 2qma_A          320 SVDFHKLFYQTISCGA  335 (497)
T ss_dssp             EEETTTTTCCCSSCEE
T ss_pred             EEcchhccCCCcceEE
Confidence            7789998877778875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.77  E-value=6e-18  Score=168.29  Aligned_cols=213  Identities=16%  Similarity=0.088  Sum_probs=146.8

Q ss_pred             CCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+    ..+ .++.+++++.+.+....    ..|. ..+..+.++++++++.+.++  ...++|++++|+++
T Consensus        53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~----~~~~-~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse  125 (476)
T 3i5t_A           53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP----YASP-WYMATSPAARLAEKIATLTP--GDLNRIFFTTGGST  125 (476)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC----CCCT-TTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHH
T ss_pred             CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc----Cccc-CccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHH
Confidence            4456777655    122 48999999999887742    1122 14567788999999988765  34679999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCCe-------------EEEee--cCCCCCcCCC------
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGT-------------LVPYY--LDEATGWGLE------  253 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~--~~~~~~~~~d------  253 (360)
                      |+..+++.+..       ..++.|++..|.|.++...+...+..             +..++  ..... +..+      
T Consensus       126 A~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~  204 (476)
T 3i5t_A          126 AVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLD  204 (476)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHH
Confidence            99999998863       13679999999999887665554332             12222  21111 2223      


Q ss_pred             --HHHHHHHHHHHHhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       254 --~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                        +++|++.++...  ..++++|+++.++|++|. +.+++.+++|.++|++||+++|+||+|.+|.+.+.  ...+..  
T Consensus       205 ~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~--~~~~~~--  278 (476)
T 3i5t_A          205 DLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE--WFASEK--  278 (476)
T ss_dssp             HHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH--
T ss_pred             HHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC--ceeeec--
Confidence              778888886421  014666666666778885 77889999999999999999999999999766653  222210  


Q ss_pred             HhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          331 RSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                        .....||  +   -+|||++++| +|+||
T Consensus       279 --~~~v~pd--i---~t~sK~l~~G~~plg~  302 (476)
T 3i5t_A          279 --VFGVVPD--I---ITFAKGVTSGYVPLGG  302 (476)
T ss_dssp             --TTCCCCS--E---EEECGGGGTTSSCCEE
T ss_pred             --ccCCCcc--h---hhhhhhhcCCCcCeEE
Confidence              1112356  2   2689999999 99986

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.77  E-value=3e-18  Score=168.93  Aligned_cols=189  Identities=13%  Similarity=-0.014  Sum_probs=132.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCC---CcCcHHHH--HHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSH---SQGIKGLR--DTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr--~~ia-~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      +|+.+++++.+.+.+..   ..+|+.   ..|...++  ++++ +++.+.+|..  . ..++++|+++|+..++.++++ 
T Consensus        57 ~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~~-  129 (447)
T 3h7f_A           57 VPRAVLQAQGSVLTNKY---AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQANAAVLHALMS-  129 (447)
T ss_dssp             CCHHHHHHHTSGGGGCC---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHhcCCc---cccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhcC-
Confidence            48889998877665321   123332   12455554  5566 7777766632  2 233377788999999999984 


Q ss_pred             CCCEEEEcCCCchHH-HH----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCC
Q 018147          214 ENDGILCPIPQYPLY-SA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~-~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~  288 (360)
                      +||+|+++.|+|..+ ..    .+...+..++.++++++ ++.+|+++|+++++..     ++++|++++|+||++.   
T Consensus       130 ~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~~~~---  200 (447)
T 3h7f_A          130 PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEF-----RPKVIIAGWSAYPRVL---  200 (447)
T ss_dssp             TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHH-----CCSEEEEECSSCCSCC---
T ss_pred             CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhc-----CCeEEEEcCCCCCCcc---
Confidence            999999999998762 11    12224566777777654 4689999999999754     7889999999999986   


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          289 EENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       289 ~~~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        ++++|.++|+++|+++|+||+|. ++.+.+.  +.+..   +     ..|   |++.|+||+++ |.|.||
T Consensus       201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~~~~~---~-----~~d---i~~~s~sK~l~-G~~gG~  257 (447)
T 3h7f_A          201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--HPSPV---P-----HAD---VVSTTVHKTLG-GGRSGL  257 (447)
T ss_dssp             --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCST---T-----TCS---EEEEESSGGGC-CCSCEE
T ss_pred             --CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--CCCCC---C-----CCc---EEEecCCcCCC-CCCeEE
Confidence              48999999999999999999974 4444442  22211   1     123   77999999985 678886

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.76  E-value=2.7e-18  Score=167.92  Aligned_cols=151  Identities=18%  Similarity=0.147  Sum_probs=120.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~  244 (360)
                      ..++++.+|+++    |    .+++++++|+++|+..++.++++ +||+|+++.+.|......+    +..|+++..++.
T Consensus        84 ~~~le~~lA~l~----g----~~~~i~~ssGt~Ai~~al~~l~~-~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~  154 (415)
T 2fq6_A           84 HFSLQQAMCELE----G----GAGCVLFPCGAAAVANSILAFIE-QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP  154 (415)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCC-TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC
Confidence            567888888876    3    24577778889999999999884 9999999999999877654    456999988864


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~--~~i~lI~DeaY~~~~~~~~~~  322 (360)
                      +       |+++|++++++      ++++|++++|+||||.+.+   +++|+++|++  +|+++|+|++|....+..   
T Consensus       155 ~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~---  215 (415)
T 2fq6_A          155 L-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK---  215 (415)
T ss_dssp             T-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC---
T ss_pred             C-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC---
Confidence            3       67888888876      7999999999999999998   8999999999  999999999998753321   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cc-cccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HF-FSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~-RvGw  360 (360)
                        ++     .++   .   .+++.|++|.++| |. ..||
T Consensus       216 --p~-----~~g---~---Div~~S~sK~lg~~g~~~~G~  242 (415)
T 2fq6_A          216 --AL-----DFG---I---DVSIQAATKYLVGHSDAMIGT  242 (415)
T ss_dssp             --GG-----GGT---C---SEEEEETTTTTTCSSSCCCEE
T ss_pred             --cc-----ccC---C---eEEEEeCccccCCCCCceEEE
Confidence              11     111   2   3889999999987 43 3565

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.76  E-value=7.5e-19  Score=170.39  Aligned_cols=192  Identities=13%  Similarity=0.056  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHHHHHcCCC---CCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      .|+.+++++.+.+.+...   .+...|........+.+.+.+++.+.+|  +++++|++++| ++++..++.+++. +||
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~~-~gd  117 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALLQ-PGD  117 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHCC-TTC
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhcC-CCC
Confidence            388899888877744210   0112233333344555545466666555  35666767776 7899999999984 999


Q ss_pred             EEEEcCCCchHHH---HHHHH--cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          217 GILCPIPQYPLYS---ASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       217 ~Vlv~~P~y~~~~---~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      +|+++.|+|..+.   ..+..  .+...+.++.+  .++.+|+++|++++++.     ++++|++++|+||+  ..+   
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---  185 (420)
T 3gbx_A          118 TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---  185 (420)
T ss_dssp             EEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---
T ss_pred             EEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---
Confidence            9999999998743   22222  33456666666  34689999999999874     68999999999974  555   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +++|.++|++||+++|+||+|....+.... +....   .     ..|   |++.|+||+++ |.|.||
T Consensus       186 l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~---~-----~~d---i~~~s~sK~~~-g~~gg~  241 (420)
T 3gbx_A          186 WAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPNPV---P-----HAH---VVTTTTHKTLA-GPRGGL  241 (420)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCCST---T-----TSS---EEEEESSGGGC-SCSCEE
T ss_pred             HHHHHHHHHHcCCEEEEECCcchhceeccc-CCccc---c-----cCC---EEEeecccCCC-CCCceE
Confidence            889999999999999999998643332211 11111   1     123   88999999986 444564

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.75  E-value=1e-18  Score=166.63  Aligned_cols=188  Identities=12%  Similarity=0.050  Sum_probs=130.0

Q ss_pred             ccCccCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-C-EEEcCChHHHHH
Q 018147          132 DRSETQGLFSADSIERAWQILDQIPGRA-----TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-D-IFLTDGASPAVH  204 (360)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~-I~~t~Ga~~al~  204 (360)
                      .++.++..+|+.+++++.+.+.+....+     ...|  ..+..++++++++.+.+.+|.  +++ + +++|+|+++++.
T Consensus         7 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~   82 (362)
T 2c0r_A            7 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFA   82 (362)
T ss_dssp             ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHH
T ss_pred             eccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHH
Confidence            3344455779999999888765421100     1112  223566788888888887775  443 5 578899999999


Q ss_pred             HHHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          205 MMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       205 ~~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      .++.+++ ++||+|+++.+.+..  +...++..| +++.++++.+.++  .+|.++++  +++      ++|+|++++|+
T Consensus        83 ~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~  152 (362)
T 2c0r_A           83 MIPMNFL-KEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNE  152 (362)
T ss_dssp             HHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEE
T ss_pred             HHHHhcC-CCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCc
Confidence            9999998 499999988766444  246677789 9999988732223  34665553  433      79999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                      ||||.+++  ++++|      +|+++|+|++|..+..     ...+    .+     -|   +++.|+||.|++ |  +|
T Consensus       153 n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~-----~~~~----~~-----~d---~~~~s~~K~~g~~G--~G  205 (362)
T 2c0r_A          153 TIEGAQFK--AFPDT------GSVPLIGDMSSDILSR-----PFDL----NQ-----FG---LVYAGAQKNLGPSG--VT  205 (362)
T ss_dssp             TTTTEECS--SCCCC------TTSCEEEECTTTTTSS-----CCCG----GG-----CS---EEEEETTTTTCCSS--CE
T ss_pred             Cccceecc--ccccc------CCCEEEEEChhhccCC-----ccch----hH-----Cc---EEEEeccccccCcC--cE
Confidence            99999755  35555      8999999999987421     1121    11     12   777899999974 5  66


Q ss_pred             C
Q 018147          360 W  360 (360)
Q Consensus       360 w  360 (360)
                      |
T Consensus       206 ~  206 (362)
T 2c0r_A          206 V  206 (362)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.75  E-value=1.1e-17  Score=163.63  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=121.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEe-e
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPY-Y  243 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v-~  243 (360)
                      ..++++.+++++    |  .. +.|++++ +++|+..++..++ .+||+|+++.+.|..+...+    +..|++++.+ +
T Consensus        60 ~~~l~~~la~~~----g--~~-~~v~~~s-Gt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  130 (421)
T 2ctz_A           60 VDVLEKRLAALE----G--GK-AALATAS-GHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR  130 (421)
T ss_dssp             HHHHHHHHHHHH----T--CS-EEEEESS-HHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred             HHHHHHHHHHHh----C--CC-ceEEecC-HHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence            578888888887    2  12 3455555 5999999999988 49999999999999877665    7789999888 5


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+       |+++|++++++      ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..+.+...   
T Consensus       131 ~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~---  191 (421)
T 2ctz_A          131 EE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR---  191 (421)
T ss_dssp             TC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC---
T ss_pred             CC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCC---
Confidence            43       78999998876      7999999999999999999   89999999999999999999933223222   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                       .+     ..+   .|   +++.|++|.+++ |.|+||
T Consensus       192 -~~-----~~~---~D---i~~~s~~K~l~~~g~~~G~  217 (421)
T 2ctz_A          192 -PL-----AWG---AA---LVTHSLTKWVGGHGAVIAG  217 (421)
T ss_dssp             -GG-----GGT---CS---EEEEETTTTTTCSSCCCCE
T ss_pred             -cc-----ccC---Ce---EEEECCcccccCCCCcEEE
Confidence             11     111   33   889999999986 889886

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.75  E-value=1e-17  Score=163.07  Aligned_cols=149  Identities=16%  Similarity=0.134  Sum_probs=115.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH-----HHHcCCeEEEee
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-----IALHGGTLVPYY  243 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~-----~~~~g~~~~~v~  243 (360)
                      ..+|++.++++.    |    .+++++++++++|+..+ ..++ .+||+|+++.|.|......     ++..|.+++.++
T Consensus        69 ~~~l~~~la~l~----g----~~~~~~~~sG~~Ai~~~-~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~  138 (400)
T 3nmy_A           69 RFAYERCVAALE----G----GTRAFAFASGMAATSTV-MELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD  138 (400)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHHHh----C----CCCEEEecCHHHHHHHH-HHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence            566777777665    3    23567777779999984 5566 4999999999999955544     344699999887


Q ss_pred             cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       244 ~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                      .+       |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+...   
T Consensus       139 ~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~---  199 (400)
T 3nmy_A          139 LT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP---  199 (400)
T ss_dssp             TT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG---
T ss_pred             CC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh---
Confidence            64       78999998876      7999999999999999998   99999999999999999999986443321   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc-ccccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSK  359 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvG  359 (360)
                        +     .++      ..++++|+||.++| +.++|
T Consensus       200 --~-----~~g------~div~~S~sK~l~g~g~~~g  223 (400)
T 3nmy_A          200 --L-----SLG------ADLVVHSATKYLNGHSDMVG  223 (400)
T ss_dssp             --G-----GGT------CSEEEEETTTTTTCSSSCCC
T ss_pred             --h-----hcC------CcEEEecCccccCCCCCcce
Confidence              0     111      23889999999985 56665

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.75  E-value=1.5e-17  Score=162.89  Aligned_cols=196  Identities=14%  Similarity=-0.011  Sum_probs=131.4

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|++.+    +.+ .++.+++++.+.+....   ...|     ..++++++++.+.+.++   .+++|++|+|+++|
T Consensus        56 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~---~~~~-----~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA  124 (434)
T 2epj_A           56 ARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW---LYGA-----PGEAEVLLAEKILGYVK---RGGMIRFVNSGTEA  124 (434)
T ss_dssp             CEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS---CCSS-----CCHHHHHHHHHHHHHHC---TTCEEEEESSHHHH
T ss_pred             CEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC---CCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHH
Confidence            345566544    122 48899999998887631   2233     23344555555555443   46899999999999


Q ss_pred             HHHHHHH---HccCCCCEEEEcCCCchHHHHHHH--------------HcCC------eEEEeecCCCCCcCCCHHHHHH
Q 018147          203 VHMMMQL---LIRSENDGILCPIPQYPLYSASIA--------------LHGG------TLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       203 l~~~~~~---l~~~~gd~Vlv~~P~y~~~~~~~~--------------~~g~------~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      +..+++.   +.  +++.|++..|+|+.+...+.              ..|.      .++.++.       .|+++|++
T Consensus       125 ~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~  195 (434)
T 2epj_A          125 TMTAIRLARGYT--GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER  195 (434)
T ss_dssp             HHHHHHHHHHHH--CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHhh--CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence            9999987   54  56789999999986543221              1132      2444442       27999999


Q ss_pred             HHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          260 QLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++++..   .++++ ++++| +|+||.+. +.+.+++|.++|++||+++|+||+|.++ ..+.  ...+ .   ..+ ..
T Consensus       196 ~l~~~~---~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~-~---~~~-~~  263 (434)
T 2epj_A          196 VFAEYG---DRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL--EGAQ-G---YFN-IE  263 (434)
T ss_dssp             HHHHHG---GGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST--THHH-H---HHT-CC
T ss_pred             HHHhCC---CCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc--chhh-H---HhC-CC
Confidence            997521   14544 45556 56799876 6999999999999999999999999986 3332  1111 1   111 12


Q ss_pred             CCceEEEEeccCcCccccccccC
Q 018147          338 KDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|     +.||||++++|+|+||
T Consensus       264 ~d-----i~s~sK~l~~G~~~G~  281 (434)
T 2epj_A          264 GD-----IIVLGKIIGGGFPVGA  281 (434)
T ss_dssp             CS-----EEEEEGGGGTTSSCEE
T ss_pred             CC-----eeeecchhcCCcceee
Confidence            55     3499999999999997

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.75  E-value=2.2e-17  Score=164.08  Aligned_cols=213  Identities=16%  Similarity=0.138  Sum_probs=143.9

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+    +. .-++.+++++.+.+....    ..|....+..+.+.++++.+.+..+  ...++|++++|+++
T Consensus        54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGse  127 (472)
T 3hmu_A           54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP----YYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSE  127 (472)
T ss_dssp             CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS----CCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred             CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHH
Confidence            4567787766    22 247999999999888743    2333334455667777777777654  35679999999999


Q ss_pred             HHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCC------------eEEEeecCC--C-CCcCCC------
Q 018147          202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDE--A-TGWGLE------  253 (360)
Q Consensus       202 al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~~d------  253 (360)
                      |+..+++.+..       .+++.|++..|.|..+.......+.            .+..++...  . +.+ .|      
T Consensus       128 A~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~  206 (472)
T 3hmu_A          128 ANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGL  206 (472)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHH
Confidence            99999998863       1468999999999987765555443            233444221  0 111 33      


Q ss_pred             --HHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       254 --~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                        +++|++.+++...  .++++|++..++|++|.+. +++.+++|.++|+++|+++|+||+|.+|...+.  ...+. . 
T Consensus       207 ~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~a~~-~-  280 (472)
T 3hmu_A          207 ARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN--WFGTQ-T-  280 (472)
T ss_dssp             HHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHH-H-
T ss_pred             HHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc--cchhH-H-
Confidence              7788888864210  1344444444466777655 888999999999999999999999999766553  22221 1 


Q ss_pred             HhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          331 RSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                      .+   ..+|  +   -+|||++++| +|+||
T Consensus       281 ~~---v~pd--i---~t~sK~l~gg~~plG~  303 (472)
T 3hmu_A          281 MG---IRPH--I---MTIAKGLSSGYAPIGG  303 (472)
T ss_dssp             HT---CCCS--E---EEECGGGTTTSSCCEE
T ss_pred             hC---CCCc--e---eeechhhhcCCcceEE
Confidence            11   2356  2   2689999887 89996

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.73  E-value=3.3e-18  Score=168.79  Aligned_cols=164  Identities=12%  Similarity=0.011  Sum_probs=122.3

Q ss_pred             CCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEe
Q 018147          163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY  242 (360)
Q Consensus       163 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v  242 (360)
                      |.+.....++++.+|+ +    |  .+ +++++|+|+++++..++.+++. +||+|+++.|+|..+...+...|++++.+
T Consensus        53 ~~~~~~~~~~~~~la~-~----g--~~-~~v~~~~G~t~a~~~~~~a~~~-~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v  123 (446)
T 2x3l_A           53 HHPEEVILKSMKQVEK-H----S--DY-DGYFLVNGTTSGILSVIQSFSQ-KKGDILMARNVHKSVLHALDISQQEGHFI  123 (446)
T ss_dssp             TSCSSHHHHHHHHHCS-C----T--TE-EEEEESSHHHHHHHHHHHTTTT-SSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred             cCcchHHHHHHHHHHh-c----C--CC-ceEEEeCCHHHHHHHHHHHhcC-CCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence            3444446667776665 4    4  23 6899999999999999999984 99999999999999999999999999999


Q ss_pred             ecCCCCC----cCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-Ccc
Q 018147          243 YLDEATG----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVY  317 (360)
Q Consensus       243 ~~~~~~~----~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~  317 (360)
                      +...+.+    +.+|+++|   +.+      ++++|++++ +|+||.+.+   +++|+++|+++|+++|+||+|.. +.|
T Consensus       124 ~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f  190 (446)
T 2x3l_A          124 ETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL  190 (446)
T ss_dssp             EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred             eCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence            8832222    46788877   333      689999999 566999998   88999999999999999999997 334


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      .+.  ..+...    ++   .|   +++.|+||.+++..++||
T Consensus       191 ~~~--~~~~~~----~g---~D---i~~~S~~K~l~~~~g~g~  221 (446)
T 2x3l_A          191 QGF--PDSTLN----YQ---AD---YVVQSFHKTLPALTMGSV  221 (446)
T ss_dssp             TTS--CCCGGG----GT---CS---EEEECHHHHSSSCTTCEE
T ss_pred             CCC--CCChHH----cC---CC---EEEECCccccccccccEE
Confidence            442  222222    11   24   889999997776666665

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.72  E-value=3.5e-17  Score=160.04  Aligned_cols=206  Identities=11%  Similarity=-0.012  Sum_probs=127.8

Q ss_pred             CCCccccCccC----CC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSETQ----GL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~~----~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...++|+..+.    .+ .++++++++.+.+....   ...|+.     +.+.++++.+.+.++   .+++|++|+|+++
T Consensus        52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~~~~~~-----~~~~~la~~l~~~~~---~~~~v~~~~sGse  120 (429)
T 4e77_A           52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL---SFGAPT-----EMEVKMAQLVTDLVP---TMDMVRMVNSGTE  120 (429)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCSSCC-----HHHHHHHHHHHHHST---TCSEEEEESSHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---ccCCCC-----HHHHHHHHHHHhhCC---CCCEEEEeCcHHH
Confidence            45678887662    22 48999999998887632   223432     344445555555444   4789999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHH-HcCCeE--EEeecCCCC---------Cc-CCCHHHHHHHHHHHHhc
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHGGTL--VPYYLDEAT---------GW-GLETSEVKKQLEAAKAK  267 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~-~~g~~~--~~v~~~~~~---------~~-~~d~~~L~~~i~~~~~~  267 (360)
                      ++..+++.... ..++.|++..+.|..+...+. ..+...  ...+....-         .+ ..|+++|++++++.   
T Consensus       121 a~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---  197 (429)
T 4e77_A          121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY---  197 (429)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhc---
Confidence            99999985431 256889999999987654221 111111  111111000         00 11799999998752   


Q ss_pred             CCCccEEEEecCCCCcccCCC--HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEE
Q 018147          268 GITVRALVVINPGNPTGQVLA--EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF  345 (360)
Q Consensus       268 g~~~k~iil~~P~NPTG~~~~--~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~  345 (360)
                      + +..++++++|+|++|.++.  .+.+++|.++|++||+++|+||+|.+| ..+.  ...+ ..   . ...+|     +
T Consensus       198 ~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~--~~~~-~~---~-~~~pd-----i  263 (429)
T 4e77_A          198 P-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL--AGAQ-DY---Y-HVIPD-----L  263 (429)
T ss_dssp             T-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--TCHH-HH---T-TCCCS-----E
T ss_pred             C-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--chHH-Hh---c-CCCCC-----e
Confidence            1 2235666788777665544  445999999999999999999999987 4432  2111 11   1 12245     3


Q ss_pred             eccCcCccccccccC
Q 018147          346 QSVSKGRYFHFFSKW  360 (360)
Q Consensus       346 ~S~SK~~~g~~RvGw  360 (360)
                      .||||++++|+|+||
T Consensus       264 ~t~sK~~~~G~~~G~  278 (429)
T 4e77_A          264 TCLGKIIGGGMPVGA  278 (429)
T ss_dssp             EEEEGGGGTTSCCEE
T ss_pred             eeecccccCCCCeEE
Confidence            499999999999997

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.72  E-value=5.3e-17  Score=158.53  Aligned_cols=195  Identities=14%  Similarity=0.072  Sum_probs=133.3

Q ss_pred             CCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      ..++|+..+    +.+ .|+.+++++.+.+....   ...|     ..++++++++++.+.++   .+++|++++|+++|
T Consensus        52 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea  120 (424)
T 2e7u_A           52 NRYLDYVMSWGPLILGHAHPKVLARVRETLERGL---TFGA-----PSPLEVALAKKVKRAYP---FVDLVRFVNSGTEA  120 (424)
T ss_dssp             CEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS---CCSS-----CCHHHHHHHHHHHHHCT---TCCEEEEESSHHHH
T ss_pred             CEEEEccccccccccCCCCHHHHHHHHHHHHhCC---CCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHH
Confidence            345666554    223 48899999998887621   1222     34566777777766654   57899999999999


Q ss_pred             HHHHHHH---HccCCCCEEEEcCCCchHHHHHHHH--------------cCC------eEEEeecCCCCCcCCCHHHHHH
Q 018147          203 VHMMMQL---LIRSENDGILCPIPQYPLYSASIAL--------------HGG------TLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       203 l~~~~~~---l~~~~gd~Vlv~~P~y~~~~~~~~~--------------~g~------~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      +..+++.   +.  .++.|++.+|+|+.+...+..              .|.      .++.++.       .|+++|++
T Consensus       121 ~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~  191 (424)
T 2e7u_A          121 TMSALRLARGYT--GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLRE  191 (424)
T ss_dssp             HHHHHHHHHHHH--CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHH
Confidence            9999986   54  468899999999876543211              121      2344432       37999999


Q ss_pred             HHHHHHhcCCCccEEEEecCCCC-cccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          260 QLEAAKAKGITVRALVVINPGNP-TGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~NP-TG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++++..   .++ ++++++|+|+ ||.++ +.+.+++|.++ ++||+++|+||+|.++ ..+.  ...+ ..   .+ ..
T Consensus       192 ~l~~~~---~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~--~~~~-~~---~~-~~  258 (424)
T 2e7u_A          192 VLKRRG---EEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF--GGAT-EL---LG-LK  258 (424)
T ss_dssp             HHHHHG---GGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST--THHH-HH---HT-CC
T ss_pred             HHHhCC---CCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch--hHHH-HH---hC-CC
Confidence            987421   134 4566678665 89765 78999999999 9999999999999987 3332  1111 11   11 22


Q ss_pred             CCceEEEEeccCcCccccccccC
Q 018147          338 KDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      +|     +.||||+|++|+|+||
T Consensus       259 ~d-----i~s~sK~l~~G~~~G~  276 (424)
T 2e7u_A          259 PD-----LVTLGKILGGGLPAAA  276 (424)
T ss_dssp             CS-----EEEECGGGGTTSSCEE
T ss_pred             cc-----hhhhhhhhhCCcceEE
Confidence            55     2399999999999997

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.72  E-value=2.3e-17  Score=162.75  Aligned_cols=207  Identities=10%  Similarity=-0.001  Sum_probs=132.2

Q ss_pred             CCccccCcc----CCC-CCHHHH-H-HHHH---HHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcC
Q 018147          128 PSILDRSET----QGL-FSADSI-E-RAWQ---ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD  197 (360)
Q Consensus       128 p~~l~~~~~----~~~-~p~~v~-~-~~~~---~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~  197 (360)
                      ..++|+..+    ..+ .++.++ + ++.+   .+....     .|+. .+..+.+.++++.+.+.++ ...+++|++|+
T Consensus        54 ~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-----~~~~-~~~~~~~~~la~~la~~~~-~~~~~~v~~~~  126 (449)
T 2cjg_A           54 RRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-----PSNS-DVYSVAMARFVETFARVLG-DPALPHLFFVE  126 (449)
T ss_dssp             CEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-----CCTT-TCCCHHHHHHHHHHHHHHC-CTTCCEEEEES
T ss_pred             cEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-----CCCc-ccCCHHHHHHHHHHHHhcC-CCCCCEEEEeC
Confidence            346676544    223 388999 8 8888   665532     1221 1223344445555544444 24678999999


Q ss_pred             ChHHHHHHHHHHHc---c---------C-CCCEEEEcCCCchHHHHHHHH---------cCC-----eEEEeecCCCCCc
Q 018147          198 GASPAVHMMMQLLI---R---------S-ENDGILCPIPQYPLYSASIAL---------HGG-----TLVPYYLDEATGW  250 (360)
Q Consensus       198 Ga~~al~~~~~~l~---~---------~-~gd~Vlv~~P~y~~~~~~~~~---------~g~-----~~~~v~~~~~~~~  250 (360)
                      |+++|+..+++.+.   .         + +||+|++.+|.|+++......         .+.     .++.++..+....
T Consensus       127 ~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  206 (449)
T 2cjg_A          127 GGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLD  206 (449)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCC
T ss_pred             chHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhh
Confidence            99999999987542   1         1 289999999999875442211         122     4555555431001


Q ss_pred             --------CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 018147          251 --------GLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (360)
Q Consensus       251 --------~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~  321 (360)
                              ..++++|++++++.   +.++++|+++..+|||| .+.+++++++|.++|++||+++|+||+|.++.+.+. 
T Consensus       207 ~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-  282 (449)
T 2cjg_A          207 EPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-  282 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-
T ss_pred             ccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-
Confidence                    24566688887631   12566655444478999 589999999999999999999999999999776653 


Q ss_pred             CCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       322 ~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       +..+...  ++   .+|     +.||||+|    |+||
T Consensus       283 -~~~~~~~--~~---~~d-----i~t~sK~l----~iG~  306 (449)
T 2cjg_A          283 -AWAYQQL--DV---APD-----IVAFGKKT----QVCG  306 (449)
T ss_dssp             -SSTHHHH--TC---CCS-----EEEECGGG----SSEE
T ss_pred             -ceeeccc--CC---Cce-----EEEecCcc----cEEE
Confidence             3332211  11   245     23789998    7886

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.71  E-value=4e-17  Score=161.34  Aligned_cols=175  Identities=9%  Similarity=0.070  Sum_probs=129.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~-~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~  246 (360)
                      ..++.+++.+++.+.+|.+  ++ +++|+|++ .++..++..+.. .+|+.|+++.+.|+.+...++..|++++.+++.+
T Consensus       131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~  207 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL  207 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence            5667777888888877754  44 99999999 455545555431 1678899999999999999999999999988732


Q ss_pred             -CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCC
Q 018147          247 -ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS  325 (360)
Q Consensus       247 -~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s  325 (360)
                       ++++.+|+++|+++++....++ ++.+|++++|+||||.+.+   +++|+++|+++|+++++|++|..+.++-    .+
T Consensus       208 ~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~----~~  279 (456)
T 2z67_A          208 DGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY----LE  279 (456)
T ss_dssp             ETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HH
T ss_pred             cCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh----hH
Confidence             3357899999999993211111 5777888999999999987   8999999999999999999998865421    01


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                        .....+.. ..|   +++.|++|.+.++.++||
T Consensus       280 --~~~~~~~~-~~D---~~~~s~hK~~~~p~g~G~  308 (456)
T 2z67_A          280 --KLKKAFKY-RVD---AVVSSSDKNLLTPIGGGL  308 (456)
T ss_dssp             --HHHHHHTS-CCS---EEEEEHHHHHCCCSSCEE
T ss_pred             --HHHHhhCC-CCC---EEEEcCCCCcCCCCCeEE
Confidence              11111211 234   567899998777788886

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.70  E-value=3.3e-16  Score=150.98  Aligned_cols=148  Identities=15%  Similarity=0.215  Sum_probs=124.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-------c
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-------I  211 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-------~  211 (360)
                      .+++++++++.+.+.+.      .|.+..+..++++++|+++    |  .  +++++++++++|+..++.++       +
T Consensus        12 ~~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~--~--~~~i~~~sGt~a~~~al~~~~~~~~~~~   77 (390)
T 3b8x_A           12 TWDDLEYKAIQSVLDSK------MFTMGEYVKQYETQFAKTF----G--S--KYAVMVSSGSTANLLMIAALFFTKKPRL   77 (390)
T ss_dssp             CCCHHHHHHHHHHHHHT------CCSSCHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHTTSSSSCSC
T ss_pred             CCCHHHHHHHHHHHHcC------CCCCChHHHHHHHHHHHHH----C--C--CcEEEECCHHHHHHHHHHHHHhhhhcCC
Confidence            46899999988888652      2556778999999999998    2  2  25677777778999999998       6


Q ss_pred             cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       212 ~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                       .+||+|+++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++      ++++|+++|   ++|...+   
T Consensus        78 -~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---  143 (390)
T 3b8x_A           78 -KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---  143 (390)
T ss_dssp             -CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---
T ss_pred             -CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---
Confidence             48999999999999999999999999999998765 478999999999875      789999885   4454444   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCC
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +++|.++|+++|+++|+|++|..
T Consensus       144 ~~~i~~l~~~~~~~li~D~a~~~  166 (390)
T 3b8x_A          144 FDEINKIIGGRDIILLEDNCESM  166 (390)
T ss_dssp             HHHHHHHHTTSCCEEEEECTTCT
T ss_pred             HHHHHHHHHHcCCEEEEECcCcc
Confidence            99999999999999999999984

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.70  E-value=4.2e-16  Score=155.09  Aligned_cols=181  Identities=11%  Similarity=0.078  Sum_probs=141.9

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC--------CCEEEcCCh
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--------NDIFLTDGA  199 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--------~~I~~t~Ga  199 (360)
                      |.++.+-.++..+|..+.+.+...++.    ....|....+..++++.+++|+.+.+|.+...        ...++|+|+
T Consensus        79 p~~~~~~~~~~~~~~~~~~~~~~~~n~----~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~gg  154 (481)
T 4e1o_A           79 PHMHAYYPALTSWPSLLGDMLADAINC----LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTV  154 (481)
T ss_dssp             TTBCSSSCCCCCHHHHHHHHHHHHHCC----CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCH
T ss_pred             CCeeEeCCCCCCHHHHHHHHHHHHhCc----ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCch
Confidence            334333333333343343444555544    25578888889999999999999999876432        367899999


Q ss_pred             HHHHHHHHHHHcc------------------CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHH
Q 018147          200 SPAVHMMMQLLIR------------------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQL  261 (360)
Q Consensus       200 ~~al~~~~~~l~~------------------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i  261 (360)
                      ++++..++.+...                  .+++.|+++.+.|..+...++..|++++.+++++  ++.+|+++|+++|
T Consensus       155 t~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~Le~~i  232 (481)
T 4e1o_A          155 SESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD--NFSLRGEALQKAI  232 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCC--CCcCCHHHHHHHH
Confidence            9999888776542                  1578999999999999999999999999999864  4689999999999


Q ss_pred             HHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      ++...++..+.+|+++.++|+||.+-+   +++|+++|++||+|+++|++|....+
T Consensus       233 ~~~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~  285 (481)
T 4e1o_A          233 EEDKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAF  285 (481)
T ss_dssp             HHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGG
T ss_pred             HHHHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHH
Confidence            887666656788888999999998866   99999999999999999999988644

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.69  E-value=9e-17  Score=155.09  Aligned_cols=187  Identities=11%  Similarity=0.077  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHcCCCCC---CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                      |+.+++++.+.+.+....+   ...|.......++++.+++++.+.+|.  +++.|++++| ++++..++.+++ ++||+
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a~~~a~~~~~-~~gd~  111 (405)
T 2vi8_A           36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQANMAVYFTVL-EHGDT  111 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHHHHHHHHHhc-CCCCE
Confidence            7888888877764321000   011222222455655444555555553  3444555666 999999999998 49999


Q ss_pred             EEEcCCCchHHHH-H--HHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHH
Q 018147          218 ILCPIPQYPLYSA-S--IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (360)
Q Consensus       218 Vlv~~P~y~~~~~-~--~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l  292 (360)
                      |+++.|+|+.+.. .  +...|  .+++.++++++ ++.+|+++|++++++.     ++++|++ +|+|. |...+   +
T Consensus       112 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l  180 (405)
T 2vi8_A          112 VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---F  180 (405)
T ss_dssp             EEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---H
T ss_pred             EEEecccccchhcccchhhhccceeEEEecccccc-cCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---H
Confidence            9999999987743 1  12233  47888877533 4789999999999864     5788776 56554 44445   8


Q ss_pred             HHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       293 ~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++|.++|+++|+++|+||+|.............   + .     ..|   +++.|+||.|+|
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~-~-----~~d---i~~~s~sK~~~g  230 (405)
T 2vi8_A          181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---V-P-----YAH---FVTTTTHKTLRG  230 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---T-T-----TCS---EEEEESSSTTCC
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCcCCCc---c-c-----cCC---EEEEeccccCCC
Confidence            999999999999999999999533322111111   1 1     134   889999999974

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.68  E-value=6.2e-16  Score=153.69  Aligned_cols=152  Identities=13%  Similarity=0.028  Sum_probs=128.2

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-------CCEEEcCChHHHHHHHHHHHcc------------------CC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADP-------NDIFLTDGASPAVHMMMQLLIR------------------SE  214 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~I~~t~Ga~~al~~~~~~l~~------------------~~  214 (360)
                      ...|....+..++++.+++|+.+.+|.+.+.       ...++|+|++++...++.+...                  .+
T Consensus       102 ~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~  181 (475)
T 3k40_A          102 GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG  181 (475)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred             ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccC
Confidence            4568888889999999999999998875322       3689999999998877776531                  13


Q ss_pred             CCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHH
Q 018147          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~  294 (360)
                      ++.|+++...|..+...++..|++++.++++++  + +|+++|+++|++..+++..+.+|+++.++|+||.+-+   +++
T Consensus       182 ~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~--~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~  255 (475)
T 3k40_A          182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQSENH--R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDE  255 (475)
T ss_dssp             HEEEEEETTSCHHHHHHHHHHTCEEEEECCBTT--B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred             CeEEEECCCchHHHHHHHHHcCCceEEEECCCC--C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHH
Confidence            468999999999999999999999999998753  6 9999999999886666655778888999999999866   999


Q ss_pred             HHHHHHHcCCEEEEccCCCCCcc
Q 018147          295 IVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       295 i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      |+++|++||+++++|++|+...+
T Consensus       256 I~~la~~~~~~lhvD~A~~~~~~  278 (475)
T 3k40_A          256 CGPVGNKHNLWIHVDAAYAGSAF  278 (475)
T ss_dssp             HHHHHHHTTCEEEEECTTGGGGG
T ss_pred             HHHHHHHhCCeEEEeHHhHHHHH
Confidence            99999999999999999987544

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.66  E-value=7.4e-16  Score=161.08  Aligned_cols=169  Identities=17%  Similarity=0.145  Sum_probs=125.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      +.++++.+++++    |  .+ +.+++++|+++++..++.+++. +||.|+++.|+|..+...+...|++++.++.+.+ 
T Consensus       207 v~~~ee~la~l~----G--~d-~~i~~~~Gtt~a~~~~i~al~~-~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-  277 (755)
T 2vyc_A          207 FGESEKYAARVF----G--AD-RSWSVVVGTSGSNRTIMQACMT-DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-  277 (755)
T ss_dssp             HHHHHHHHHHHH----T--CS-EEEEESSHHHHHHHHHHHHHCC-TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-
T ss_pred             HHHHHHHHHHHh----C--CC-ceEEECCcHHHHHHHHHHHhcC-CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-
Confidence            556666676665    3  22 4588999999999999999995 9999999999999999889999999999987643 


Q ss_pred             CcC----C-----CHHHHHHHHHHH----HhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          249 GWG----L-----ETSEVKKQLEAA----KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       249 ~~~----~-----d~~~L~~~i~~~----~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      +|+    +     |++.|++++++.    .+++.++++++++|| ||||.+.+   +++|+++|+++|+++|+||+|...
T Consensus       278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchh
Confidence            344    4     999999999762    123445569999998 79999988   899999999999999999999864


Q ss_pred             c-cCCCC-CCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          316 V-YVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       316 ~-~~~~~-~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      . +.+.- +...+ ..  .. ....+.++|++.|++|+++|
T Consensus       354 ~~~~~~~~~~~~~-~g--~~-aD~~~~~~iv~~S~hK~L~g  390 (755)
T 2vyc_A          354 ARFNPIYADHYAM-RG--EP-GDHNGPTVFATHSTHKLLNA  390 (755)
T ss_dssp             GGGCGGGTTSSSS-CS--CC-CCCSSBEEEEEEETTTSSSC
T ss_pred             cccCcccCCcchh-cC--Cc-CCccCCCeEEEECccccccC
Confidence            2 33210 01111 00  00 01112268899999998753

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.64  E-value=2e-16  Score=152.96  Aligned_cols=190  Identities=12%  Similarity=0.104  Sum_probs=121.9

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMM  206 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~-t~Ga~~al~~~  206 (360)
                      |..++++.++..+|+.+++++.+......  ....+.+  ...++.+++.+.+.+.+|.+ ++++|++ |+|+++++..+
T Consensus        39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~  113 (398)
T 2fyf_A           39 PRDGRFGSGPSKVRLEQLQTLTTTAAALF--GTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAA  113 (398)
T ss_dssp             CSSCBCCSSSCCCCHHHHHGGGTTTTTTT--TSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHH
T ss_pred             cCCccccCCCCCCCHHHHHHHhhcCCCcc--CcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHH
Confidence            44566666677789999888765211110  1112221  22345555666666666754 4578998 99999999999


Q ss_pred             HHHHccCCCCEEEEcCCCchH-HHHHHHHc--CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          207 MQLLIRSENDGILCPIPQYPL-YSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      +.+++. +| .+++..+.|.. +...+...  |++++.++++.  ++..+.+     +++      ++++|++++|+|||
T Consensus       114 ~~~l~~-~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~~-----i~~------~~~~v~~~~~~npt  178 (398)
T 2fyf_A          114 AFGLID-KR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEPQ-----TDP------SVDVIAWAHNETST  178 (398)
T ss_dssp             HHHTCS-SC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCCC-----CCT------TCSEEEEESEETTT
T ss_pred             HHHhcC-CC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCcc-----ccC------CCCEEEEeCcCCCc
Confidence            999984 77 22333333421 12245555  88888888862  2333321     222      78999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      |.+++.+++.++      +|+++|+|++|..+...     ..+    .+     .|   +++.|+||.|+++-++||
T Consensus       179 G~~~~~~~i~~~------~~~~vivD~a~~~~~~~-----~~~----~~-----~d---i~~~s~sK~~~~~gg~g~  232 (398)
T 2fyf_A          179 GVAVAVRRPEGS------DDALVVIDATSGAGGLP-----VDI----AE-----TD---AYYFAPQKNFASDGGLWL  232 (398)
T ss_dssp             TEECCCCCCTTC------C-CEEEEECTTTTTTSC-----CCG----GG-----CS---EEEECTTSTTCSCSSEEE
T ss_pred             ceecchHHhhhh------cCCeEEEEeccccCCcc-----cCc----cc-----Cc---EEEEecCcccCCCCceEE
Confidence            999996665554      89999999999874321     111    11     23   788999999987656776

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.64  E-value=4.9e-15  Score=142.57  Aligned_cols=166  Identities=10%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH--HHHHHcC--CeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS--ASIALHG--GTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~--~~~~~~g--~~~~~v~~  244 (360)
                      ..++.+++++.+.+.+|..   +.|++|+|++++++.++..+  .+||+|+++.+.|..+.  ..++..|  .+++.++.
T Consensus        33 ~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  107 (379)
T 3ke3_A           33 FQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTA  107 (379)
T ss_dssp             HHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEec
Confidence            3456666666666666643   68999999999999998665  49999999999998653  4455566  47777776


Q ss_pred             CCC------CCc-CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          245 DEA------TGW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       245 ~~~------~~~-~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      +..      ..| .+|++++++++++.     ++++|++++++||||.+++.+++++|.++|+++|+++|+|+++. .  
T Consensus       108 ~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g--  179 (379)
T 3ke3_A          108 ERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G--  179 (379)
T ss_dssp             EESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T--
T ss_pred             cccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C--
Confidence            431      112 47999999999653     78999999999999999999999999999999999999999976 2  


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                       ..  ...+...    +   -|   +++.|++|.+++...+||
T Consensus       180 -~~--~~~~~~~----~---~d---~~~~s~~K~l~~~~g~g~  209 (379)
T 3ke3_A          180 -CV--WLDMKEL----G---ID---VLISAPQKGWSSTPCAGL  209 (379)
T ss_dssp             -TC--CCCHHHH----T---CS---EEEECTTTTTCSCCCEEE
T ss_pred             -Cc--ccccccc----C---CC---EEEecchhhcCCCCceEE
Confidence             21  2222221    1   12   778999999877555553

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.60  E-value=1.3e-15  Score=158.30  Aligned_cols=169  Identities=18%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH-HHHcCCeEEEeecCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTLVPYYLDEA  247 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~  247 (360)
                      +.++++.+|+++    |  .+ ..+++++|+++++..++.+++. +||.|+++.++|..+... ++..|++++.++...+
T Consensus       175 i~e~e~~lA~~~----g--ae-~~i~v~nGtt~an~~ai~al~~-pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~  246 (730)
T 1c4k_A          175 AVAAEKHAARVY----N--AD-KTYFVLGGSSNANNTVTSALVS-NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  246 (730)
T ss_dssp             HHHHHHHHHHHT----T--CS-EEEEESSHHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHH----C--CC-cEEEECCHHHHHHHHHHHHhcC-CCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence            577888888776    3  22 4588999999999999999995 999999999999988887 8889999998877533


Q ss_pred             CCcC----CCHHHH-----HHHHHHH-Hh--cCCCc-cEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          248 TGWG----LETSEV-----KKQLEAA-KA--KGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       248 ~~~~----~d~~~L-----~~~i~~~-~~--~g~~~-k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                       .|+    +|+++|     ++++++. .+  ...++ |++++++| ||+|.+.+   +++|+++|+++|+++|+||+|..
T Consensus       247 -~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~  321 (730)
T 1c4k_A          247 -PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG  321 (730)
T ss_dssp             -TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred             -ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccccc
Confidence             344    688888     6666531 00  01012 89999999 58999987   89999999999999999999975


Q ss_pred             C-ccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          315 N-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       315 ~-~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      . .|.+..+..+.... ..++  .++.++++++|+||+++
T Consensus       322 ~~~f~~~~~g~~~l~~-~~~g--~D~~~~iv~~S~hK~L~  358 (730)
T 1c4k_A          322 YEQFIPMMRNSSPLLI-DDLG--PEDPGIIVVQSVHKQQA  358 (730)
T ss_dssp             GGGSSGGGGGGCTTSC-CCCC--TTSCEEEEEECHHHHSS
T ss_pred             ccccCcccCCcCcccc-cccC--CCCCCEEEEECCCCCCC
Confidence            3 34321000011100 0011  12225799999999865

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.60  E-value=4e-15  Score=148.16  Aligned_cols=190  Identities=14%  Similarity=0.054  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCC------CcCcHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHH
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSH------SQGIKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLL  210 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~---I~~t~Ga~~al~~~~~~l  210 (360)
                      +++.|++++...+.+..   ..+|+.      ..-..++++.+.+++.+.+|.  +.++   .+++.++++|+..++.++
T Consensus        66 ~~~~V~eA~~~~l~~~y---~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt~An~~al~al  140 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKY---SEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGSPANLAVYTAL  140 (490)
T ss_dssp             CCHHHHHHHTSGGGTCC---CCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCC---ccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchHHHHHHHHHHH
Confidence            48889998877665432   112222      111346665566666666663  3432   345567899999999999


Q ss_pred             ccCCCCEEEEcCCCchHHHH--------HHHHcCCe--EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          211 IRSENDGILCPIPQYPLYSA--------SIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       211 ~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      ++ |||+|+++.+.|..+..        .+...|..  ++.++++++ ++.+|+++|++++++.     ++|+|+++.|+
T Consensus       141 ~~-pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~-~~~iD~d~le~~l~~~-----~~klIi~~~s~  213 (490)
T 2a7v_A          141 LQ-PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSA  213 (490)
T ss_dssp             CC-SCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSS
T ss_pred             cC-CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc-cCCcCHHHHHHHHhhc-----CCcEEEEcCCC
Confidence            95 99999999998865421        23345544  444555543 4689999999999754     68999888999


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccccccc
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      ||+  +.+   +++|.++|+++|+++++|+++. ++++.+.  .++..   .     +-|   +++.|++|+++| .|-|
T Consensus       214 ~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~--~~~~~---~-----~aD---iv~~S~hK~l~G-p~GG  274 (490)
T 2a7v_A          214 YAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPF---K-----HAD---IVTTTTHKTLRG-ARSG  274 (490)
T ss_dssp             CCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGG---G-----TCS---EEEEESSGGGCS-CSCE
T ss_pred             CCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCc--CCCCC---C-----CCC---EEEECCcccCcc-ccch
Confidence            985  444   8999999999999999999964 5555443  22211   1     123   788999999853 3444


Q ss_pred             C
Q 018147          360 W  360 (360)
Q Consensus       360 w  360 (360)
                      |
T Consensus       275 ~  275 (490)
T 2a7v_A          275 L  275 (490)
T ss_dssp             E
T ss_pred             h
Confidence            3

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.59  E-value=5.7e-15  Score=146.61  Aligned_cols=219  Identities=14%  Similarity=0.077  Sum_probs=140.8

Q ss_pred             CCCCccccCcc--C--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET--Q--GL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~--~--~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+  .  .+ -++.+++++.+.+..........|+. ....++++.+++.+.+..+  ...++|++++|++
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGs  137 (472)
T 1ohv_A           61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS  137 (472)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred             CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence            35668888776  1  23 48999999877653210000113443 2357899999997776543  3568999999999


Q ss_pred             HHHHHHHHHHc-------cC-----------------CC---CEEEEcCCCchHHHHHHH-HcCCe-------------E
Q 018147          201 PAVHMMMQLLI-------RS-----------------EN---DGILCPIPQYPLYSASIA-LHGGT-------------L  239 (360)
Q Consensus       201 ~al~~~~~~l~-------~~-----------------~g---d~Vlv~~P~y~~~~~~~~-~~g~~-------------~  239 (360)
                      +|+..+++.+.       ++                 +|   +.|++.++.|..+...+. ..|..             .
T Consensus       138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~  217 (472)
T 1ohv_A          138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI  217 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred             hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence            99999998873       11                 35   899999999987665443 22321             1


Q ss_pred             EEeecCCC---CC--c-----CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc-CCCHHHHHHHHHHHHHcCCEEEE
Q 018147          240 VPYYLDEA---TG--W-----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       240 ~~v~~~~~---~~--~-----~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~-~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +.+|....   ..  +     ..|+++|++++++....+.++++|++...+|+||. +.+.+.+++|.++|++||+++|+
T Consensus       218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~  297 (472)
T 1ohv_A          218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV  297 (472)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            12221100   00  0     12678898888764332235777776666888996 46789999999999999999999


Q ss_pred             ccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcC-cccccc
Q 018147          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG-RYFHFF  357 (360)
Q Consensus       309 DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~-~~g~~R  357 (360)
                      ||+|.++.+.+.  +..+...  ++. ..+|     +.||||+ ++||+.
T Consensus       298 DEv~~g~g~~g~--~~~~~~~--gv~-~~~D-----i~t~sK~~l~GG~~  337 (472)
T 1ohv_A          298 DEVQTGGGSTGK--FWAHEHW--GLD-DPAD-----VMTFSKKMMTGGFF  337 (472)
T ss_dssp             ECTTTTTTTTSS--SSGGGGG--CCS-SCCS-----EEEECGGGSSEEEE
T ss_pred             eCcccCCCCCCC--chhcccc--CCC-CCCC-----EEEEccccccCCcc
Confidence            999998665442  2232211  110 0134     3589999 677653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.56  E-value=8.2e-15  Score=143.78  Aligned_cols=124  Identities=23%  Similarity=0.269  Sum_probs=95.6

Q ss_pred             CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-ccCCCCEEEEcCCCchHHHHHHH----HcCCeEE
Q 018147          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIA----LHGGTLV  240 (360)
Q Consensus       166 ~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l-~~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~  240 (360)
                      .+|..++.+.+.+.+.+.+|.  ++++|++++|++.++..++.++ . .+||+|+++.+.|+.+...++    ..|++++
T Consensus       103 ~~g~~~~~~~~~~~la~~~g~--~~~~i~~~~g~taa~ea~~~a~~~-~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~  179 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAGL--EIANASMYDGATALAEGVLLALRE-TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL  179 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTS--SEECSCBSSHHHHHHHHHHHHHHH-HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCC--CccceEEeCcHHHHHHHHHHHHhc-CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence            567666666666666666664  5678999999994433333332 3 489999999999999886654    4799999


Q ss_pred             EeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEc
Q 018147          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (360)
Q Consensus       241 ~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~D  309 (360)
                      .++..   ++.+|+++    +++      ++++|++++| ||||.+.+   +++|+++|+++|+++|+|
T Consensus       180 ~v~~~---~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd  231 (438)
T 1wyu_A          180 TLPLE---GGRTPLPE----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAV  231 (438)
T ss_dssp             EECCB---TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEE
T ss_pred             EEcCc---CCccCHHH----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEE
Confidence            99872   24677665    433      7999999999 99999997   999999999999999966

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.31  E-value=4.9e-16  Score=153.83  Aligned_cols=200  Identities=11%  Similarity=-0.038  Sum_probs=133.3

Q ss_pred             CCCCccccCccCC-----CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~~~-----~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +..++||+..+..     --+|.+++++.+.+....   ...|... ...+|.+.+++++    +   ..+.++++++++
T Consensus        98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~---~~~~~~~-~~~~Lae~L~~~~----p---~~~~v~~~nSGs  166 (465)
T 2yky_A           98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL---NLSTQTE-NEALFAEAVCDRF----P---SIDLVRFTNSGT  166 (465)
Confidence            4566888877622     237889999888776631   2234322 2455666666554    2   357899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHH----HcCC--eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccE
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIA----LHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA  273 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~  273 (360)
                      +|+..+++.+.. ..++.|++.+++|..+...+.    ..|.  .++.++.       .|++.|++++++.   +.++++
T Consensus       167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~---~~~~aa  236 (465)
T 2yky_A          167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRH---GHDCAA  236 (465)
Confidence            999999987531 245899999999987665433    1222  2222221       2688899888742   126777


Q ss_pred             EEEecCCCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          274 LVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       274 iil~~P~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                      |++...+|+||.+. +.+.+++|.++|+++|+++|+||+|. +..+ .  ...+...  ++   .+|     +.+|||++
T Consensus       237 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~--~~a~~~~--gv---~pD-----i~t~sK~l  302 (465)
T 2yky_A          237 ILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-G--GGAQEML--GI---SAD-----LTTLGKYI  302 (465)
Confidence            77654456699655 57889999999999999999999999 6332 1  1111110  11   133     45899999


Q ss_pred             cccccccC
Q 018147          353 YFHFFSKW  360 (360)
Q Consensus       353 ~g~~RvGw  360 (360)
                      ++|+|+||
T Consensus       303 g~G~piG~  310 (465)
T 2yky_A          303 GGGMSFGA  310 (465)
Confidence            99999998

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.54  E-value=2.8e-14  Score=147.37  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=121.6

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCC
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA  247 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~  247 (360)
                      -+.++++.+|+++    |  . ...+++++|++.|+..++.+++. +||.|+++.++|.++...+...|++++.++.+.+
T Consensus       196 ~i~eaE~~lA~~f----G--a-~~a~~v~nGts~An~~ai~al~~-pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~  267 (715)
T 3n75_A          196 PHKEAEQYIARVF----N--A-DRSYMVTNGTSTANKIVGMYSAP-AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN  267 (715)
T ss_dssp             HHHHHHHHHHHHH----T--C-SEEEEESSHHHHHHHHHHHHHCC-TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC
T ss_pred             HHHHHHHHHHHHh----C--C-CCceEECcHHHHHHHHHHHHhCC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecccc
Confidence            3678888888887    3  1 24577888889999999999995 9999999999999999999999999999987643


Q ss_pred             CCcCC---------CHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc-c
Q 018147          248 TGWGL---------ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV-Y  317 (360)
Q Consensus       248 ~~~~~---------d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~-~  317 (360)
                       .|++         |++.|++++++..+ .+.++++++++| ||+|.+.+   +++|+++|+++  .+|+||+|.... |
T Consensus       268 -~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~livDEAH~~~~~f  339 (715)
T 3n75_A          268 -AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHFDSAWVPYTNF  339 (715)
T ss_dssp             -TTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEEECTTCTTGGG
T ss_pred             -ccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEEcccccccccc
Confidence             5664         89999999986210 012348999999 99999998   77778888765  379999998753 4


Q ss_pred             CCCCCCCCHHHHHHhhCCC-CCCceEEEEeccCcCccc
Q 018147          318 VPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~-~~~~~~i~~~S~SK~~~g  354 (360)
                      .+.-+..+      .+..+ ..|+-+++++|++|++++
T Consensus       340 ~~~~~~~~------al~~g~~aD~vii~~~S~hKtL~g  371 (715)
T 3n75_A          340 SPIYEGKC------GMSGGRVEGKVIYETQSTHKLLAA  371 (715)
T ss_dssp             SGGGTTSS------TTSSSCCTTCEEEEEECHHHHSSC
T ss_pred             CCcccccc------ccccCcCCCEEEEEEecccccccC
Confidence            32100011      11111 134324679999998764

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.17  E-value=2.9e-10  Score=111.24  Aligned_cols=140  Identities=9%  Similarity=0.028  Sum_probs=105.6

Q ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC---CCCEEEEcCCCchHHHHHHHHcCCeEEEeec
Q 018147          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYL  244 (360)
Q Consensus       168 G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~---~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~  244 (360)
                      +...+.+.+..++.+..|++ +....++++|+|.+...++.+.++.   +++.|+++.-.|....+++...|+.++.++.
T Consensus        95 ~~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~  173 (450)
T 3bc8_A           95 LLNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN  173 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence            35567778888888877864 2334688888874444444444431   3899999999999999999999999988865


Q ss_pred             CC-CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          245 DE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       245 ~~-~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .. ++.+.+|++.|+++|++...   +.+++++.+| .+.+|.+-+   +++|+++|++||+++++|+||+.
T Consensus       174 ~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~  239 (450)
T 3bc8_A          174 VLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGL  239 (450)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred             eecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCch
Confidence            21 23568999999999987521   2456677777 444566666   99999999999999999999997

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.07  E-value=2e-09  Score=104.68  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=98.5

Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC--C-CCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCCCcC
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--E-NDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWG  251 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~--~-gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~  251 (360)
                      +.+|++. .|++ .....++++|+|.++..++.+.++.  | ||.|+++...|-.....+...|++++.++.. .++.++
T Consensus       122 ~ld~L~~-~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~  199 (501)
T 3hl2_A          122 VLDIIKL-AGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR  199 (501)
T ss_dssp             HHHHHHH-TTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred             HHHHHHH-cCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence            3455544 4765 2345899999997777766666642  2 4999999999999999999999999998752 122578


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEEec-CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          252 LETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       252 ~d~~~L~~~i~~~~~~g~~~k~iil~~-P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      +|++.++++|++.   +.+..++++.+ +.|-.|.+-+   +++|+++|++||+++++|+||+..
T Consensus       200 id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah  258 (501)
T 3hl2_A          200 TDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQ  258 (501)
T ss_dssp             ECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTT
T ss_pred             CCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhh
Confidence            9999999999875   21233444444 4554445444   999999999999999999999884

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=98.90  E-value=1.8e-10  Score=111.30  Aligned_cols=162  Identities=12%  Similarity=-0.032  Sum_probs=108.7

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEE-cCChH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATG-------AYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFL-TDGAS  200 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~-t~Ga~  200 (360)
                      ...++.++...|+.|++++.+.+.+.......       ......-+.+.|+.+++++      +++. ++|++ |.|+|
T Consensus        28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll------~~~~~~evif~t~~~T  101 (386)
T 3qm2_A           28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL------NIPSNYKVLFCHGGGR  101 (386)
T ss_dssp             CEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH------TCCTTEEEEEEESCTT
T ss_pred             CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh------CCCCCceEEEEcCCch
Confidence            34456667788999999987655432110111       1111345788999999998      3433 47888 69999


Q ss_pred             HHHHHHHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecC--CCCCcCCCHHHHHHHHHHHHhcCCCccEEEE
Q 018147          201 PAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLD--EATGWGLETSEVKKQLEAAKAKGITVRALVV  276 (360)
Q Consensus       201 ~al~~~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil  276 (360)
                      +++++++..++. +||+|++..-.+..  +...++..| ++..++++  +. ++.+++++++.++++      ++++|.+
T Consensus       102 ~a~n~ai~~l~~-~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~-G~~~~~~~~~~~l~~------~t~lV~~  172 (386)
T 3qm2_A          102 GQFAGVPLNLLG-DKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVD-GKRAVKPMREWQLSD------NAAYLHY  172 (386)
T ss_dssp             HHHHHHHHHHCT-TCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEET-TEEEECCGGGCCCCT------TCSCEEE
T ss_pred             HHHHHHHHhccC-CCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccC-CCCCCchHHHhhcCC------CCcEEEE
Confidence            999999999984 99998755543333  334455668 88888877  33 223677777776665      7999988


Q ss_pred             ecCCCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          277 INPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       277 ~~P~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      +|-.|.||.+ .+   +++|.     +|+++++|.+..-
T Consensus       173 ~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~  203 (386)
T 3qm2_A          173 CPNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI  203 (386)
T ss_dssp             CSEETTTTEECCC---CCCCC-----TTCCEEEECTTTT
T ss_pred             ECCcCCcCEecCc---hhhhc-----CCCEEEEEccccc
Confidence            8888889996 66   55553     7999999998764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.83  E-value=3.1e-08  Score=97.45  Aligned_cols=198  Identities=13%  Similarity=0.044  Sum_probs=122.0

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|++++++.+++.....  ...+  ..-..++.    +.+.++..   ..+.++++++++
T Consensus        85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~--~~~~--~~~~~~la----e~l~~~~p---~~~~v~f~~SGs  153 (454)
T 4ao9_A           85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN--LTGH--NLLEGRLA----RLICERFP---QIEQLRFTNSGT  153 (454)
T ss_dssp             TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC--CCSE--ESSHHHHH----HHHHHHST---TCSEEEEESSHH
T ss_pred             CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC--ccCC--cHHHHHHH----HHHHHhCC---CCCEEEEeCchH
Confidence            45668887665     223489999999998876422  2222  22233444    44444432   367899999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc------CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccE
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH------GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA  273 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~------g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~  273 (360)
                      +|...+++.... ...++|+...-+|.......-..      ......+|.       -|++.+++.+++.   +.++.+
T Consensus       154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~---~~~iAa  223 (454)
T 4ao9_A          154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERH---GPEIAV  223 (454)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHT---GGGEEE
T ss_pred             HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhc---CCceEE
Confidence            999999887642 13467888887877543211100      112222221       2789999988763   123544


Q ss_pred             EEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcC
Q 018147          274 LVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG  351 (360)
Q Consensus       274 iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~  351 (360)
                       +|..| ..-.|.+. +++.+++|.++|++||+++|.||+..+  ..+.  .... .. -+   -.||     +-+++|+
T Consensus       224 -vIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~--~~a~-e~-~g---v~PD-----i~t~gK~  288 (454)
T 4ao9_A          224 -VLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAP--HGLA-NK-LG---IRSD-----LTTLGKY  288 (454)
T ss_dssp             -EEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGST--TCHH-HH-HT---CCCS-----EEEEEGG
T ss_pred             -EEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcc--ccch-hc-cC---CCCc-----EEEeccc
Confidence             44566 44467655 567799999999999999999999974  2221  1111 11 12   2367     3478899


Q ss_pred             cccccccc
Q 018147          352 RYFHFFSK  359 (360)
Q Consensus       352 ~~g~~RvG  359 (360)
                      ++||+-+|
T Consensus       289 lggG~Pig  296 (454)
T 4ao9_A          289 IGGGMSFG  296 (454)
T ss_dssp             GGTTSSCE
T ss_pred             cCCCCcce
Confidence            99887655

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=98.83  E-value=1e-09  Score=105.49  Aligned_cols=156  Identities=10%  Similarity=0.014  Sum_probs=106.6

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCC--CC-----CcCcHHHHHHHHHHHHhhcCCCCCC-CCEEE-cCChHHHHHHHH
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAY--SH-----SQGIKGLRDTIAAGIEARDGFPADP-NDIFL-TDGASPAVHMMM  207 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y--~~-----~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~-t~Ga~~al~~~~  207 (360)
                      ....|+.|++++.+.+.+........+  ..     ..-+.+.|+.+++++    |  +++ ++|++ |.|+|++++.++
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~--~~~~~evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL----A--VPDNYKVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEEcCchHHHHHHHH
Confidence            557799999999887654321111111  11     112455666666666    3  333 57888 689999999999


Q ss_pred             HHHcc-CCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcc
Q 018147          208 QLLIR-SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (360)
Q Consensus       208 ~~l~~-~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG  284 (360)
                      ..+.. .+||+|++..-++..  +...++..|..++.++.+.+  +..++++++.++++      ++++|.++|-.|.||
T Consensus        95 ~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~--~~~~~~~~~~~i~~------~t~lV~~~h~et~tG  166 (377)
T 3e77_A           95 LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS--YTKIPDPSTWNLNP------DASYVYYCANETVHG  166 (377)
T ss_dssp             HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS--SCSCCCGGGCCCCT------TCSCEEEESEETTTT
T ss_pred             HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC--cCCCCChHHhccCC------CccEEEEeCccCchh
Confidence            99984 138999877765543  33445566877776676543  35666666555544      789999998888999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       285 ~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .+.+.        +|+++|+++++|.+..-
T Consensus       167 ~~~pi--------i~~~~~~~~~vD~~q~~  188 (377)
T 3e77_A          167 VEFDF--------IPDVKGAVLVCDMSSNF  188 (377)
T ss_dssp             EECSS--------CCCCTTCCEEEECTTTT
T ss_pred             eEchh--------hhccCCCEEEEEccccc
Confidence            99983        36788999999998775

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.83  E-value=1.4e-09  Score=104.10  Aligned_cols=159  Identities=13%  Similarity=0.089  Sum_probs=106.4

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCC--CC-----CcCcHHHHHHHHHHHHhhcCCCCC-CCCEEE-cCChH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAY--SH-----SQGIKGLRDTIAAGIEARDGFPAD-PNDIFL-TDGAS  200 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y--~~-----~~G~~~lr~~ia~~l~~~~g~~~~-~~~I~~-t~Ga~  200 (360)
                      .++|+.+|...|+.|++++.+.+.+........|  ..     ..-+.+.|+.+++++    |  ++ +++|++ |+|+|
T Consensus         6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~--~~~~~~v~f~t~~~T   79 (361)
T 3m5u_A            6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY----E--LNDDYEVLFLQGGAS   79 (361)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHH
T ss_pred             eEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh----C--CCCCceEEEEcCcHH
Confidence            4566777778899999998876653211111111  11     122455666677666    3  33 457887 99999


Q ss_pred             HHHHHHHHHHccCCCCEEE-EcCCCch-HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          201 PAVHMMMQLLIRSENDGIL-CPIPQYP-LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       201 ~al~~~~~~l~~~~gd~Vl-v~~P~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      ++++.++..+.  +||+++ +..-.|. .+...++..|+++..++.++++.+.++++. +  +++      ++++|.++|
T Consensus        80 ~a~n~~~~~~~--~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~------~t~lv~~~~  148 (361)
T 3m5u_A           80 LQFAMIPMNLA--LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD------NADYAYICS  148 (361)
T ss_dssp             HHHHHHHHHHC--CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT------TSSEEEEES
T ss_pred             HHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC------CCCEEEEeC
Confidence            99999999987  677653 2222332 334456778999999999876433345554 3  554      799999998


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      ..|.||.+++.        +++ +|+++++|.+..-
T Consensus       149 ~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~  175 (361)
T 3m5u_A          149 NNTIYGTQYQN--------YPK-TKTPLIVDASSDF  175 (361)
T ss_dssp             EETTTTEECSS--------CCC-CSSCEEEECGGGT
T ss_pred             CCCCcceeCCc--------ccc-cCCEEEEEccccc
Confidence            88889998772        233 4999999987664

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.79  E-value=2.3e-07  Score=91.40  Aligned_cols=215  Identities=15%  Similarity=0.130  Sum_probs=124.1

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|++++++.+.+..... ....+.+.....+    +++.+.+... .-..+.++++++++
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~~~~----lae~L~~~~p-~~~~~~v~f~~sGs  135 (456)
T 4atq_A           62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH-TCFMVTPYEGYVA----VTEQLNRLTP-GDHAKRTVLFNSGA  135 (456)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-CTTTTSCCHHHHH----HHHHHHHHSS-CSSCEEEEEESSHH
T ss_pred             CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC-cccCccCcHHHHH----HHHHHHHhCC-CCCCcEEEEeCChH
Confidence            45667887665     223488999999888877532 1112222222233    4444444321 11245789999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHH-HcC-------------CeEEEeecCC----CCCcCCCHHHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHG-------------GTLVPYYLDE----ATGWGLETSEVKKQL  261 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~-~~g-------------~~~~~v~~~~----~~~~~~d~~~L~~~i  261 (360)
                      +|+..+++.... .....|+...-.|.+...... ..+             ..+..+|...    ......+.+.+++.+
T Consensus       136 EA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  215 (456)
T 4atq_A          136 EAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAI  215 (456)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHH
Confidence            999999986532 245788888888876543322 211             1233343321    111112345555544


Q ss_pred             HHHHh--cCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          262 EAAKA--KGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       262 ~~~~~--~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      +...+  .+.++ +.+|..| +.-.|.+ .+++-+++|.++|++||+++|.||+..++.-.+.  ...+..+     +-.
T Consensus       216 ~~~e~~~~~~~i-AAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~--~~a~e~~-----gv~  287 (456)
T 4atq_A          216 TMIEKQIGGDQV-AAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE--WFAVDHE-----GVV  287 (456)
T ss_dssp             HHHHHHTCGGGE-EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT-----TCC
T ss_pred             HHHHHhhcCCce-EEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc--ccccccc-----CCC
Confidence            43221  11234 4455556 4445655 4567899999999999999999999999654443  3222111     123


Q ss_pred             CCceEEEEeccCcCcccccccc
Q 018147          338 KDISLVSFQSVSKGRYFHFFSK  359 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~~RvG  359 (360)
                      ||     +-+++|+++||.-+|
T Consensus       288 PD-----ivt~gK~lggg~P~~  304 (456)
T 4atq_A          288 PD-----IITMAKGIAGGLPLS  304 (456)
T ss_dssp             CS-----EEEECGGGGTTSSCE
T ss_pred             Cc-----hhhhhhcccCcCCce
Confidence            77     346789998887554

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.66  E-value=3.2e-07  Score=90.67  Aligned_cols=212  Identities=18%  Similarity=0.142  Sum_probs=121.5

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|++++++.+.+.+...  ...+..  ...+....+|+.+.+...  .+.+.|+++++++
T Consensus        65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~--~~~~~~--~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGs  138 (473)
T 4e3q_A           65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPG--YHAFFG--RMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGS  138 (473)
T ss_dssp             TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCC--CCCCTT--EEEHHHHHHHHHHHHHSS--CSSCEEEEESSHH
T ss_pred             CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccc--cccccc--ccCHHHHHHHHHHHhhCC--CCccEEEEeCchH
Confidence            34556776555     123478999999998887542  111111  112334456666655432  3456899999999


Q ss_pred             HHHHHHHHHHcc-------CCCCEEEEcCCCchHHHHH-HHHcCC-----------eEEEeecCCC---CCcCCC-----
Q 018147          201 PAVHMMMQLLIR-------SENDGILCPIPQYPLYSAS-IALHGG-----------TLVPYYLDEA---TGWGLE-----  253 (360)
Q Consensus       201 ~al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~-~~~~g~-----------~~~~v~~~~~---~~~~~d-----  253 (360)
                      +|+..+++....       .....|+...-.|.+.... +...|.           ....++....   ....-.     
T Consensus       139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  218 (473)
T 4e3q_A          139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV  218 (473)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence            999999987431       1235688888777754332 222221           1222221100   000111     


Q ss_pred             ---HHHHHHHHHHHHhcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          254 ---TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       254 ---~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                         .+++++.+...   +.+.-+.+|.-| +.-.|.+. +++-+++|.++|++||+++|.||+..+|.-.+.  ...+..
T Consensus       219 ~~~~~~l~~~i~~~---~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~--~fa~e~  293 (473)
T 4e3q_A          219 ARLARELEETIQRE---GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN--TWGCVT  293 (473)
T ss_dssp             HHHHHHHHHHHHHH---CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS--SCHHHH
T ss_pred             HHHHHHHHHHHHhh---CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc--hhHHHh
Confidence               23444444432   223335566666 44456654 456899999999999999999999999654443  222211


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCcccc-ccc
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFH-FFS  358 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~-~Rv  358 (360)
                           .+..||     +-+++|++++| +-+
T Consensus       294 -----~gv~PD-----i~t~~K~l~gG~~Pl  314 (473)
T 4e3q_A          294 -----YDFTPD-----AIISSKNLTAGFFPM  314 (473)
T ss_dssp             -----TTCCCS-----EEEECGGGGTTSSCC
T ss_pred             -----cCCCCC-----hHHhcccccCCCCCc
Confidence                 122377     34678999887 444

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.66  E-value=1.6e-07  Score=98.99  Aligned_cols=212  Identities=13%  Similarity=0.088  Sum_probs=122.0

Q ss_pred             CccccCcc----CCCC--CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          129 SILDRSET----QGLF--SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       129 ~~l~~~~~----~~~~--p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      .+||+..+    ..+.  +|++++++.+.+..........+     ..+....+|+.+.+..+.+ ..+.+++++++++|
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~-----~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA  454 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPEN-----VYEPALKCAELLLDGVGKG-WASRVYFSDNGSTA  454 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTE-----ECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccccc-----CCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHH
Confidence            56777665    2222  68999999888877432111112     1233445666665543211 13689999999999


Q ss_pred             HHHHHHHHc----cCCC------------CEEEEcCCCchHH-HHHHHHcCCe---------------E-----------
Q 018147          203 VHMMMQLLI----RSEN------------DGILCPIPQYPLY-SASIALHGGT---------------L-----------  239 (360)
Q Consensus       203 l~~~~~~l~----~~~g------------d~Vlv~~P~y~~~-~~~~~~~g~~---------------~-----------  239 (360)
                      +..+++...    ...|            .+|+...-.|.+- ...+...|..               +           
T Consensus       455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  534 (831)
T 4a0g_A          455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN  534 (831)
T ss_dssp             HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred             HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence            999888762    1122            3688877777643 3333333310               0           


Q ss_pred             --EEeecCCC------C--CcCCC------------------HHHHHHHHHHHH--hcCCCccEEEEecC--CCCcccCC
Q 018147          240 --VPYYLDEA------T--GWGLE------------------TSEVKKQLEAAK--AKGITVRALVVINP--GNPTGQVL  287 (360)
Q Consensus       240 --~~v~~~~~------~--~~~~d------------------~~~L~~~i~~~~--~~g~~~k~iil~~P--~NPTG~~~  287 (360)
                        ..+++...      +  .|. +                  .+.|++.+++..  ....++. .+|..|  ++..|.+.
T Consensus       535 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~ia-avi~Epvvqg~gG~~~  612 (831)
T 4a0g_A          535 GSWNISLPESFSEIAPEYGTFT-SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVG-ALIIEPVIHGAGGMHM  612 (831)
T ss_dssp             TEEEEECCTTSCCCCSSTTEES-CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEE-EEEECCSEETTTTSEE
T ss_pred             CceEecCCcccccccccccccc-chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEE-EEEEecccccCCCCcc
Confidence              01111110      0  000 1                  245555554311  1112444 444555  67777765


Q ss_pred             -CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc-ccccC
Q 018147          288 -AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH-FFSKW  360 (360)
Q Consensus       288 -~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~-~RvGw  360 (360)
                       +.+.+++|.++|++||+++|+||++.+|...+.  ...+...  ++   .||     +-+|||+++|| +++||
T Consensus       613 ~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~--~fa~e~~--gv---~PD-----iitlsK~L~gG~~Plga  675 (831)
T 4a0g_A          613 VDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV--ETTTELL--GC---KPD-----IACFAKLLTGGMVPLAV  675 (831)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB--SSTHHHH--SS---CCS-----EEEECGGGGTTSSCCEE
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC--chhhHhc--CC---CCc-----EEEEecccccCccCcEE
Confidence             778899999999999999999999999766654  2222211  22   266     23799999998 78885

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.33  E-value=5.1e-06  Score=80.61  Aligned_cols=187  Identities=15%  Similarity=0.073  Sum_probs=108.2

Q ss_pred             CCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC----CEEEcCChHHHHHHHHHHHcc
Q 018147          140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN----DIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~----~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      .++.|++++-..+.+....   +..-|+-..-+.++.+...+..++.+|.  +..    ||-.-+ ++.|...++.+|++
T Consensus        66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a--~~A~w~VNVQP~S-Gs~AN~avy~All~  142 (490)
T 3ou5_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYS-GSPANLAVYTALLQ  142 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTC--CTTTEEEECCCSS-HHHHHHHHHHHHCC
T ss_pred             CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCC--CccccCCCCCcCC-HHHHHHHHHHHHcC
Confidence            4677777765555443211   1112333333455555555566666663  333    444445 45667788888885


Q ss_pred             CCCCEEEEcCCCchHHHHH--------HHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC
Q 018147          213 SENDGILCPIPQYPLYSAS--------IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP  282 (360)
                       |||+|+..+....++..-        +...|  .+.++|.+++++ ..+|.|++++...+.     ++|+|++---.+|
T Consensus       143 -PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t-~~IDyd~~~~~A~~~-----kPklIi~G~SaY~  215 (490)
T 3ou5_A          143 -PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT-GLIDYNQLALTARLF-----RPRLIIAGTSAYA  215 (490)
T ss_dssp             --CCCEECBC----------------------------CBCEETTT-TEECHHHHHHHHHHH-----CCSEEEECCSSCC
T ss_pred             -CCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCC-CcccHHHHHHHHhhc-----CCCeEEECCccCc
Confidence             999999998776655321        11112  345667777653 479999999998887     8999987655555


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      -  .++   ++++.++|.+.|.++++|.+|. +++-.+.  +++....        .|   |+..|.-|+|.|
T Consensus       216 r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~--~psP~~~--------AD---vVTtTTHKTLrG  270 (490)
T 3ou5_A          216 R--LID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPFKH--------AD---IVTTTTHKTLRG  270 (490)
T ss_dssp             S--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGGGT--------CS---EEEEESSSTTCS
T ss_pred             c--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccc--cCCcccc--------ce---EEeccccccccC
Confidence            2  445   8888888899999999999984 4444443  4443322        23   677888898865

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.03  E-value=1.1  Score=40.47  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++.+|++.+| ..+.+.|. ..|-.|++.+-.-......++..|.+...+.+|-.     |.+++++.++...++..+
T Consensus        30 KvalVTGas~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFV-AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSA-----NLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence            354444445555 44555666 48999998876656667777778888888877643     678888877765544345


Q ss_pred             ccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          271 VRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      +..++ +|. .++.+-  -++.++|+++.++
T Consensus       104 iDiLV-NNAG~~~~~~~~~~~~e~w~~~~~v  133 (273)
T 4fgs_A          104 IDVLF-VNAGGGSMLPLGEVTEEQYDDTFDR  133 (273)
T ss_dssp             EEEEE-ECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCChhhccHHHHHHHHHH
Confidence            65444 554 333332  3577899998875

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.59  E-value=4.5  Score=35.91  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCCCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          189 DPNDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      +-.-+++|.|+ .+| ..+.+.|. ..|..|++.+-.-.....   .++..|.++..+.+|-.     |.+++++.+++.
T Consensus         8 ~gKvalVTGas-~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~   80 (255)
T 4g81_D            8 TGKTALVTGSA-RGLGFAYAEGLA-AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVT-----DELAIEAAFSKL   80 (255)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT-----CHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-----CHHHHHHHHHHH
Confidence            33345555544 555 44555666 489999998755443333   34456888888877643     788898888887


Q ss_pred             HhcCCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          265 KAKGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       265 ~~~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      .++..++..++ +|. .++.+.  -++.++|+++.++
T Consensus        81 ~~~~G~iDiLV-NNAG~~~~~~~~~~~~e~~~~~~~v  116 (255)
T 4g81_D           81 DAEGIHVDILI-NNAGIQYRKPMVELELENWQKVIDT  116 (255)
T ss_dssp             HHTTCCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHHCCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence            77665776554 544 222222  3577888887763

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.81  E-value=3.4  Score=36.04  Aligned_cols=101  Identities=16%  Similarity=0.067  Sum_probs=60.7

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|-.|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..+
T Consensus         7 k~vlVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   80 (247)
T 3rwb_A            7 KTALVTGAAQGIGKAIAARLAA-DGATVIVSDINAEGAKAAAASIGKKARAIAADIS-----DPGSVKALFAEIQALTGG   80 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHHHCCC
Confidence            3455555544333445556664 8989998876655666666666878887776643     678888777765444335


Q ss_pred             ccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++-+--..+.+  .-.+.++++++.+
T Consensus        81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~  109 (247)
T 3rwb_A           81 IDILVNNASIVPFVAWDDVDLDHWRKIID  109 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            66555442222222  2346677776654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=88.84  E-value=4.9  Score=35.77  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       190 ~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ...+++|.|+..-=..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.++++++...++..
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAK-NGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVS-----SAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCC-----CHHHHHHHHHHHHHHcC
Confidence            34455555544333445566664 8889988876655555666667777777777633     67888877776544433


Q ss_pred             CccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          270 TVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       270 ~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      ++.+++ +|.. .+.+  ...+.++|+++.+
T Consensus       101 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~  130 (277)
T 4dqx_A          101 RVDVLV-NNAGFGTTGNVVTIPEETWDRIMS  130 (277)
T ss_dssp             CCCEEE-ECCCCCCCBCTTTSCHHHHHHHHH
T ss_pred             CCCEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence            566555 4442 2222  2356777776554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=88.42  E-value=5.7  Score=34.76  Aligned_cols=101  Identities=11%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|.+|++.+-.-.......+..+.++..+.+|-.     |.+.++++++...++..+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVR-EGATVAIADIDIERARQAAAEIGPAAYAVQMDVT-----RQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHSSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCC-----CHHHHHHHHHHHHHHcCC
Confidence            4466666554433455566664 8889988876655556666666777777776633     678888888766555446


Q ss_pred             ccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++-+--..+.+  .-.+.++++++.+
T Consensus        83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~  111 (259)
T 4e6p_A           83 LDILVNNAALFDLAPIVEITRESYEKLFA  111 (259)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence            66555442222222  2346677765444

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=87.68  E-value=1.5  Score=43.43  Aligned_cols=114  Identities=17%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             CCCCCCCCEEEcCChHHHHHHHHHHHcc--CC---------C-C-----EEEEcCCCch-------------------HH
Q 018147          185 GFPADPNDIFLTDGASPAVHMMMQLLIR--SE---------N-D-----GILCPIPQYP-------------------LY  228 (360)
Q Consensus       185 g~~~~~~~I~~t~Ga~~al~~~~~~l~~--~~---------g-d-----~Vlv~~P~y~-------------------~~  228 (360)
                      ...++++.|.++.+...++...++.|.+  ..         | .     ..+...|.|+                   .+
T Consensus       125 ~L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~  204 (525)
T 3gh5_A          125 DLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQ  204 (525)
T ss_dssp             EEEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHH
T ss_pred             EEEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHHHHH
Confidence            3456777898888776666665555432  11         1 0     1244446664                   24


Q ss_pred             HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      .+.+..++.++..+.+.++.+|.+..+.+.+.-..    |...      ......|..++++|+++|++.|+++||-||-
T Consensus       205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~----Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP  274 (525)
T 3gh5_A          205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI----GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP  274 (525)
T ss_dssp             HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT----TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHcCCcEEEEEeccCCccccccccchhhhhc----cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            55667778999999988887888877665543221    1111      1122346789999999999999999998775

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=87.29  E-value=4.8  Score=35.88  Aligned_cols=99  Identities=14%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++|.|+ .+| ..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..+
T Consensus        31 ~vlVTGas-~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           31 VAIVTGAG-AGIGLAVARRLAD-EGCHVLCADIDGDAADAAATKIGCGAAACRVDVS-----DEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             EEEETTTT-STHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred             EEEEECCC-cHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence            45555544 444 445556664 8889988876655556666666777777766533     677887777665444335


Q ss_pred             ccEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          271 VRALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      +.+++-+--..+.+.  -.+.++++++.+
T Consensus       104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~  132 (277)
T 3gvc_A          104 VDKLVANAGVVHLASLIDTTVEDFDRVIA  132 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence            665554322222222  346777776544

>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*

Probab=87.22  E-value=1.7  Score=42.80  Aligned_cols=108  Identities=12%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             CCCCCCEEEcCChHHHHHHHHHHHcc----CC-CC-----EEEEcCCCch-------------------HHHHHHHHcCC
Q 018147          187 PADPNDIFLTDGASPAVHMMMQLLIR----SE-ND-----GILCPIPQYP-------------------LYSASIALHGG  237 (360)
Q Consensus       187 ~~~~~~I~~t~Ga~~al~~~~~~l~~----~~-gd-----~Vlv~~P~y~-------------------~~~~~~~~~g~  237 (360)
                      .++++.|.++.....++...++.|.+    +. |.     ..+...|.|+                   .+.+.+..++.
T Consensus        97 ~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~mA~~Kl  176 (507)
T 2gjx_A           97 TINDDQCLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKL  176 (507)
T ss_dssp             EESSSCEEEEESSHHHHHHHHHHHHHHEEECTTCCEEEECEEEEECCSCSEEEEEEETTTSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEeCCeEEEEECCHHHHHHHHHHHHHHhhhccCCceeeccEEEeecCCcceeeeeeccCCCCCCHHHHHHHHHHHHHhCC
Confidence            45667788887766666555555432    11 21     1233336554                   24455666788


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      ++..+.+.++.+|.+..+.+.+.-+.    | .         ..|.|..++++|+++|++.|+++||-||-
T Consensus       177 N~lh~HltDdq~wr~ei~~~P~Lt~~----G-a---------~~~~~~~YT~~di~eiv~yA~~rgI~VIP  233 (507)
T 2gjx_A          177 NVFHWHLVDDPSFPYESFTFPELMRK----G-S---------YNPVTHIYTAQDVKEVIEYARLRGIRVLA  233 (507)
T ss_dssp             CEEEEECCCSSCCCBCCSSCTHHHHH----H-S---------SCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEecccCeeeeccccchhhhc----c-c---------cCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            88888887777787765544332221    0 0         12446789999999999999999998875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=87.21  E-value=6.3  Score=34.34  Aligned_cols=102  Identities=17%  Similarity=0.081  Sum_probs=59.7

Q ss_pred             CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       190 ~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ...+++|.|+...=..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAK-GGAKVVIVDRDKAGAERVAGEIGDAALAVAADIS-----KEADVDAAVEAALSKFG   82 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCC-----CHHHHHHHHHHHHHhcC
Confidence            34456665554433445556664 7889988876655666666667777777777643     67777777766544433


Q ss_pred             CccEEEEecC-CCCcc--cCCCHHHHHHHHH
Q 018147          270 TVRALVVINP-GNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       270 ~~k~iil~~P-~NPTG--~~~~~~~l~~i~~  297 (360)
                      ++..++.+-- ..+.+  ...+.++++++.+
T Consensus        83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~  113 (261)
T 3n74_A           83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVG  113 (261)
T ss_dssp             CCCEEEECCCCCCCSCCGGGSCHHHHHHHHH
T ss_pred             CCCEEEECCccCCCCCCcccCCHHHHHHHHH
Confidence            5665554422 12112  2246677666443

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=87.00  E-value=5.6  Score=35.12  Aligned_cols=100  Identities=11%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-.......+..|.++..+.+|-.     |.+.++++++...++..+
T Consensus        28 k~vlVTGas~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           28 RKALVTGATGGIGEAIARCFHA-QGAIVGLHGTREDKLKEIAADLGKDVFVFSANLS-----DRKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTT-----SHHHHHHHHHHHHHHHTS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecC-----CHHHHHHHHHHHHHHcCC
Confidence            4455555544333445556664 8889888776555556666677888888777643     677787777655444335


Q ss_pred             ccEEEEecCC-CCccc--CCCHHHHHHHHH
Q 018147          271 VRALVVINPG-NPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~-NPTG~--~~~~~~l~~i~~  297 (360)
                      +.+++ +|.. ...+.  -.+.++|+++.+
T Consensus       102 iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~  130 (266)
T 3grp_A          102 IDILV-NNAGITRDGLFVRMQDQDWDDVLA  130 (266)
T ss_dssp             CCEEE-ECCCCC-----CCCHHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence            66555 4432 22222  234556665443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=86.83  E-value=5.2  Score=34.55  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=56.0

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|+..-=..+.+.|.. .|..|++.+-.-.......+..+..+..+.+|-.     |.+.+++.++...++..++
T Consensus         5 ~vlVTGas~GIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~i   78 (235)
T 3l6e_A            5 HIIVTGAGSGLGRALTIGLVE-RGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLA-----HHEDVDVAFAAAVEWGGLP   78 (235)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT-----SHHHHHHHHHHHHHHHCSC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCCceEEECCCC-----CHHHHHHHHHHHHHhcCCC
Confidence            355555544333445556664 8889988776655555555555555666666533     6777877776654443356


Q ss_pred             cEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          272 RALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       272 k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      .+++-+--..+.+.  -.+.++++++.+
T Consensus        79 d~lvnnAg~~~~~~~~~~~~~~~~~~~~  106 (235)
T 3l6e_A           79 ELVLHCAGTGEFGPVGVYTAEQIRRVME  106 (235)
T ss_dssp             SEEEEECCCC------CCCHHHHHHHHH
T ss_pred             cEEEECCCCCCCCChHhCCHHHHHHHHH
Confidence            66654422222222  346777776654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=86.46  E-value=5.6  Score=34.84  Aligned_cols=100  Identities=14%  Similarity=0.058  Sum_probs=59.6

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..+
T Consensus         9 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            9 KKAIVIGGTHGMGLATVRRLVE-GGAEVLLTGRNESNIARIREEFGPRVHALRSDIA-----DLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCC-----CHHHHHHHHHHHHHHhCC
Confidence            4566666554433455566664 8889988876655556666666777777777643     677777776654333335


Q ss_pred             ccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++ +|.. .+.+  .-.+.++++++.+
T Consensus        83 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  111 (255)
T 4eso_A           83 IDLLH-INAGVSELEPFDQVSEASYDRQFA  111 (255)
T ss_dssp             EEEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence            55444 4442 2222  1246777777665

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.46  E-value=13  Score=31.99  Aligned_cols=101  Identities=10%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+...=..+.+.|.. .|.+|++..-.-....   ..++..|.++..+.+|-.     |.+.+++.++...++
T Consensus         6 k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            6 KVALVTGASRGIGFEVAHALAS-KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNIS-----DIESIQNFFAEIKAE   79 (247)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCC-----CHHHHHHHHHHHHHH
Confidence            3456665544333445556664 7888887765544333   334445777877777643     788888888776655


Q ss_pred             CCCccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          268 GITVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      ..++..++.+--..+.+  .-.+.+++++..+
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~  111 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVIN  111 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence            55677666442222222  1346666665544

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=86.23  E-value=6.7  Score=34.49  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=54.9

Q ss_pred             CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       190 ~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ...+++|.|+..-=..+.+.|.. .|..|++..-.-......++..+...+..++       -|.+.+++.++...++..
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~g   98 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLE-HGHRVIISYRTEHASVTELRQAGAVALYGDF-------SCETGIMAFIDLLKTQTS   98 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHH-TTCCEEEEESSCCHHHHHHHHHTCEEEECCT-------TSHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHhcCCeEEECCC-------CCHHHHHHHHHHHHHhcC
Confidence            34566666554433455566664 7888887765444445555556755544333       267778877776555444


Q ss_pred             CccEEEEecCC-CCcccCCCHHHHHHHHH
Q 018147          270 TVRALVVINPG-NPTGQVLAEENQRAIVD  297 (360)
Q Consensus       270 ~~k~iil~~P~-NPTG~~~~~~~l~~i~~  297 (360)
                      ++.+++-+--. .+.....+.++++++.+
T Consensus        99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~  127 (260)
T 3gem_A           99 SLRAVVHNASEWLAETPGEEADNFTRMFS  127 (260)
T ss_dssp             CCSEEEECCCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCccCCCCCCCCHHHHHHHHH
Confidence            66655544221 12223345566655554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=86.18  E-value=10  Score=33.55  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=59.8

Q ss_pred             CCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      ....+++|.|+..-=..+.+.|.. .|..|++..-.-......   ++..|.++..+.+|-     -|.+.+++.++...
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~   98 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAV-AGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDV-----TSESEIIEAFARLD   98 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCT-----TCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-----CCHHHHHHHHHHHH
Confidence            334455655544333455566664 899999887554443333   334577777777663     36888888887765


Q ss_pred             hcCCCccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          266 AKGITVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       266 ~~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      ++..++.+++-+--..+.+  .-.+.++|+++.+
T Consensus        99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~  132 (271)
T 4ibo_A           99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVID  132 (271)
T ss_dssp             HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHH
Confidence            5555666555442222212  2346777776654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=86.02  E-value=5.3  Score=35.42  Aligned_cols=100  Identities=8%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++.+|++.+|- .+.+.|. ..|..|++.+-.-....   ..++..|.++..+.+|-.     |.+++++.++...++
T Consensus         8 KvalVTGas~GIG~aiA~~la-~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFA-LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS-----KKKDVEEFVRRTFET   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence            3444445555554 4455666 48999988775544333   334556888888887743     688888888776555


Q ss_pred             CCCccEEEEecCC--CCcc--cCCCHHHHHHHHHH
Q 018147          268 GITVRALVVINPG--NPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P~--NPTG--~~~~~~~l~~i~~l  298 (360)
                      -.++.. +++|..  .+.+  .-++.++|+++.++
T Consensus        82 ~G~iDi-LVNNAGi~~~~~~~~~~~~e~~~~~~~v  115 (254)
T 4fn4_A           82 YSRIDV-LCNNAGIMDGVTPVAEVSDELWERVLAV  115 (254)
T ss_dssp             HSCCCE-EEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred             cCCCCE-EEECCcccCCCCChhhCCHHHHHHHHHH
Confidence            445654 456653  2333  24688899988774

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.92  E-value=5.3  Score=35.38  Aligned_cols=101  Identities=17%  Similarity=0.070  Sum_probs=57.6

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC------------ch---HHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ------------YP---LYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~------------y~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.            -.   .....++..|.++..+.+|-.     |.+
T Consensus        11 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~   84 (287)
T 3pxx_A           11 KVVLVTGGARGQGRSHAVKLAE-EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR-----DRA   84 (287)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT-----CHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC-----CHH
Confidence            3455555544333455566664 88888876432            11   122234455778888777643     678


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      .+++.++...++..++.++|-+--..+.+...+.++++++.+
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~  126 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD  126 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhh
Confidence            888777765444335665554422333334467788887665

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=85.68  E-value=7.4  Score=33.80  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|.+|++..-.-.......+..+.....+.+|-     -|.+.++++++...++..+
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAE-RGAKVIGTATSESGAQAISDYLGDNGKGMALNV-----TNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcccceEEEEeC-----CCHHHHHHHHHHHHHHcCC
Confidence            3456665544333445556664 898998877655555555555555566666653     3678888877765444335


Q ss_pred             ccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++ +|.. .+.+  .-.+.++++++.+
T Consensus        84 iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~  112 (248)
T 3op4_A           84 VDILV-NNAGITRDNLLMRMKEEEWSDIME  112 (248)
T ss_dssp             CSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence            66555 4432 2222  2346777776554

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=85.60  E-value=6.4  Score=34.75  Aligned_cols=100  Identities=13%  Similarity=0.076  Sum_probs=57.0

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|+..-=..+.+.|.. .|..|++..-.-..........+.++..+.+|-.     |.+.++++++...++..++
T Consensus         7 ~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            7 VWLVTGASSGFGRAIAEAAVA-AGDTVIGTARRTEALDDLVAAYPDRAEAISLDVT-----DGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCC-----CHHHHHHHHHHHHHhCCCC
Confidence            455555443333445556664 8889988776655666666666767777766533     6777877776654443356


Q ss_pred             cEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          272 RALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       272 k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      ..++-+--..+.+.  -.+.++++++.+
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~  108 (281)
T 3m1a_A           81 DVLVNNAGRTQVGAFEETTERELRDLFE  108 (281)
T ss_dssp             SEEEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence            65554322222222  345565554433

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=85.41  E-value=8.9  Score=33.84  Aligned_cols=99  Identities=14%  Similarity=0.001  Sum_probs=58.9

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|+...=..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.++++++.. ++..++
T Consensus        32 ~vlVTGas~GIG~aia~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~v~~~~~~~-~~~~~i  104 (281)
T 3ppi_A           32 SAIVSGGAGGLGEATVRRLHA-DGLGVVIADLAAEKGKALADELGNRAEFVSTNVT-----SEDSVLAAIEAA-NQLGRL  104 (281)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHH-TTSSEE
T ss_pred             EEEEECCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHH-HHhCCC
Confidence            456655544433445556664 8889988876655566666667777777777643     678888888765 333345


Q ss_pred             cEEEEecC-CCCcc-------cCCCHHHHHHHHH
Q 018147          272 RALVVINP-GNPTG-------QVLAEENQRAIVD  297 (360)
Q Consensus       272 k~iil~~P-~NPTG-------~~~~~~~l~~i~~  297 (360)
                      ..++.++. ..+.+       ...+.+++++..+
T Consensus       105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~  138 (281)
T 3ppi_A          105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTID  138 (281)
T ss_dssp             EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHH
T ss_pred             CeEEEccCcccccccccccccccCCHHHHHHHHH
Confidence            55554423 22222       2456666666554

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=85.39  E-value=4.8  Score=35.15  Aligned_cols=100  Identities=19%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|-.|++.+-.-.......+..+.++..+.+|-.     |.+.++++++...++..+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQ-EGATVLGLDLKPPAGEEPAAELGAAVRFRNADVT-----NEADATAALAFAKQEFGH   81 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESSCC------------CEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCceEEEEccCC-----CHHHHHHHHHHHHHHcCC
Confidence            3455555544333445556664 8888888765544444455555666666666533     677787777665444335


Q ss_pred             ccEEEEecCC-CCccc------CCCHHHHHHHHH
Q 018147          271 VRALVVINPG-NPTGQ------VLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~-NPTG~------~~~~~~l~~i~~  297 (360)
                      +..++ +|.. .+.+.      ..+.+++++..+
T Consensus        82 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~  114 (257)
T 3tpc_A           82 VHGLV-NCAGTAPGEKILGRSGPHALDSFARTVA  114 (257)
T ss_dssp             CCEEE-ECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCccccccccCCHHHHHHHHH
Confidence            66555 4432 22221      245677776554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.06  E-value=12  Score=32.55  Aligned_cols=99  Identities=18%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHH---HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-...   ...++..|.++..+.+|-.     |.+.+++.++...++
T Consensus         8 k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            8 ATVAVIGAGDYIGAEIAKKFAA-EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR-----NEDEVTAFLNAADAH   81 (252)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCC-----CHHHHHHHHHHHHhh
Confidence            3456665554433445556664 788888876544333   3334445778888877643     678888887765554


Q ss_pred             CCCccEEEEecCC-CCccc--CCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG-NPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG~--~~~~~~l~~i~~  297 (360)
                       .++..++ +|.. ...+.  -.+.++++++.+
T Consensus        82 -g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  112 (252)
T 3h7a_A           82 -APLEVTI-FNVGANVNFPILETTDRVFRKVWE  112 (252)
T ss_dssp             -SCEEEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             -CCceEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence             3565554 4442 22222  356677766544

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=85.03  E-value=9.3  Score=33.34  Aligned_cols=100  Identities=13%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-.....   .++..|.++..+.+|-.     |.+.+++.++...++
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           13 AVAIVTGAAAGIGRAIAGTFAK-AGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVT-----DEQHREAVIKAALDQ   86 (256)
T ss_dssp             CEEEECSCSSHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence            3455555544333445556664 78888887655443333   33445778887777643     677777777665444


Q ss_pred             CCCccEEEEecCC--CCcccCCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG--NPTGQVLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~--NPTG~~~~~~~l~~i~~  297 (360)
                      ..++..++ +|..  .+...-.+.++++++.+
T Consensus        87 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~  117 (256)
T 3gaf_A           87 FGKITVLV-NNAGGGGPKPFDMPMSDFEWAFK  117 (256)
T ss_dssp             HSCCCEEE-ECCCCCCCCCTTCCHHHHHHHHH
T ss_pred             cCCCCEEE-ECCCCCCCCCCCCCHHHHHHHHH
Confidence            33566555 4432  22222467777776654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=84.66  E-value=15  Score=32.25  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=58.9

Q ss_pred             CCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHH
Q 018147          187 PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       187 ~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      ......+++|.|+...=..+.+.|.. .|..|++..-.-..    ....++..|.++..+.+|-.     |.+.+++.++
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~   99 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAA-----SESDFIEAIQ   99 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCC-----CHHHHHHHHH
Confidence            44445566666554433455566664 78888876543222    23344556777877777643     6777877776


Q ss_pred             HHHhcCCCccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          263 AAKAKGITVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      ...++..++..++.+--....+  .-.+.++++++.+
T Consensus       100 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~  136 (271)
T 4iin_A          100 TIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVID  136 (271)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHH
Confidence            6544433566555442222212  2346677666544

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=84.59  E-value=14  Score=31.98  Aligned_cols=101  Identities=16%  Similarity=0.028  Sum_probs=54.0

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCc-hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.- ......++..|.++..+.+|-.     |.+.++++++...++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            8 KLAVITGGANGIGRAIAERFAV-EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS-----QPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecC-----CHHHHHHHHHHHHHHcC
Confidence            3456665544333455556664 788888765433 3333344556777777776633     67777777765443323


Q ss_pred             CccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          270 TVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       270 ~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      ++.+++-+--..+.+  .-.+.++++++.+
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~  111 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFE  111 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            566555332222222  1245666655443

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=84.38  E-value=12  Score=33.10  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      .+++.+|++.+| ..+...|.. .|-.|++.+-.-.  .....+...|.+...+.+|-.     |.+++++.+++..++-
T Consensus         8 KvalVTGas~GIG~aia~~la~-~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            8 KVVIVTGGASGIGGAISMRLAE-ERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQ-----DDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecC-----CHHHHHHHHHHHHHHh
Confidence            454444555556 444556664 8888877653322  233445556777777777643     6777777777655543


Q ss_pred             CCccEEEEecC--CCCcccCCCHHHHHHHHHH
Q 018147          269 ITVRALVVINP--GNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       269 ~~~k~iil~~P--~NPTG~~~~~~~l~~i~~l  298 (360)
                      .++..+ ++|.  +.+...-.+.++|+++.++
T Consensus        82 G~iDiL-VNnAGi~~~~~~~~~~e~~~~~~~v  112 (258)
T 4gkb_A           82 GRLDGL-VNNAGVNDGIGLDAGRDAFVASLER  112 (258)
T ss_dssp             SCCCEE-EECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCCEE-EECCCCCCCCCccCCHHHHHHHHHH
Confidence            456644 4555  2234455678888887764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=84.09  E-value=14  Score=32.03  Aligned_cols=99  Identities=15%  Similarity=0.043  Sum_probs=53.9

Q ss_pred             CCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          191 NDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       191 ~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ..+++|.| +.+| ..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.++++++...++..
T Consensus         7 k~vlVTGa-s~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g   79 (253)
T 1hxh_A            7 KVALVTGG-ASGVGLEVVKLLLG-EGAKVAFSDINEAAGQQLAAELGERSMFVRHDVS-----SEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             CEEEETTT-TSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTT-----CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCC-CcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCC-----CHHHHHHHHHHHHHHcC
Confidence            34555554 4444 445556664 7888888765544444444445666766666533     67777777766443333


Q ss_pred             CccEEEEecCCCCccc--CCCHHHHHHHH
Q 018147          270 TVRALVVINPGNPTGQ--VLAEENQRAIV  296 (360)
Q Consensus       270 ~~k~iil~~P~NPTG~--~~~~~~l~~i~  296 (360)
                      ++.+++-+--..+.+.  ..+.++++++.
T Consensus        80 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~  108 (253)
T 1hxh_A           80 TLNVLVNNAGILLPGDMETGRLEDFSRLL  108 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHH
Confidence            5665553322222221  24566665544

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=84.02  E-value=12  Score=32.88  Aligned_cols=98  Identities=22%  Similarity=0.192  Sum_probs=55.3

Q ss_pred             EEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          193 IFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       193 I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      +++.+|++.+| ..+.+.|.. .|..|++..-.-......   ++..|.++..+.+|-.     |.+.+++.++...++.
T Consensus         6 ~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            6 VILITGASGGIGEGIARELGV-AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT-----DRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHHc
Confidence            44444444555 444555664 888888876554433333   3445778877777633     6778877776654443


Q ss_pred             CCccEEEEecC-CCCccc--CCCHHHHHHHHH
Q 018147          269 ITVRALVVINP-GNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       269 ~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~  297 (360)
                      .++.++| +|. ..+.+.  -.+.++++++.+
T Consensus        80 g~iD~lV-nnAG~~~~~~~~~~~~~~~~~~~~  110 (264)
T 3tfo_A           80 GRIDVLV-NNAGVMPLSPLAAVKVDEWERMID  110 (264)
T ss_dssp             SCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             CCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence            3566555 444 222222  346677776554

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=83.83  E-value=13  Score=32.27  Aligned_cols=81  Identities=20%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-.......+..+.++..+.+|-.     |.+.++++++...++..+
T Consensus        13 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~   86 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLVG-QGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT-----SEKDVQTALALAKGKFGR   86 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHHHCCC
Confidence            4466665543333455556664 7888887664434444445555667777766533     677777777654433335


Q ss_pred             ccEEEEe
Q 018147          271 VRALVVI  277 (360)
Q Consensus       271 ~k~iil~  277 (360)
                      +.+||-+
T Consensus        87 id~li~~   93 (265)
T 2o23_A           87 VDVAVNC   93 (265)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            6655543

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=83.78  E-value=1.6  Score=42.96  Aligned_cols=112  Identities=16%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             CCCCCCEEEcCChHHHHHHHHHHHcc--CC---------CC-----EEEEcCCCch-------------------HHHHH
Q 018147          187 PADPNDIFLTDGASPAVHMMMQLLIR--SE---------ND-----GILCPIPQYP-------------------LYSAS  231 (360)
Q Consensus       187 ~~~~~~I~~t~Ga~~al~~~~~~l~~--~~---------gd-----~Vlv~~P~y~-------------------~~~~~  231 (360)
                      .++++.|.++.+...++...++.|.+  ..         |.     ..+...|.|+                   .+.+.
T Consensus       103 ~v~~~~i~I~a~~~~G~~~g~qTL~Ql~~~~~~~~~~~~~~~~lp~~~I~D~Prf~~RG~mLD~aR~f~~~~~ik~~id~  182 (512)
T 1jak_A          103 DSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDR  182 (512)
T ss_dssp             EEETTEEEEEESSHHHHHHHHHHHHHHSCGGGGCSSCCCCCCEECCEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHH
T ss_pred             EEeCCEEEEEEcCHHHHHHHHHHHHHHhhhhhcccccccCcccccceEEeecCCCCccceeeccCCCCCCHHHHHHHHHH
Confidence            45567788877666655555544421  11         11     1233446654                   24455


Q ss_pred             HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       232 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +..++.+...+-+.++.+|.+..+.+.+.-+.    |...      ......|..++++|+++|++.|+++||-||-
T Consensus       183 ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~----ga~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP  249 (512)
T 1jak_A          183 VARYKYNKLHLHLSDDQGWRIAIDSWPRLATY----GGST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP  249 (512)
T ss_dssp             HHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT----TTSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCcEEEEEeccCCCceehhhhhHHHHhh----cCcc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            66678888888888777788876655543221    1111      1122347889999999999999999998885

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.43  E-value=13  Score=32.75  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH----HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      ..+++|.|+..-=..+.+.|. ..|..|++..-.-.......+    ..|.++..+.+|-.     |.+.++++++...+
T Consensus        28 k~~lVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFM-RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR-----APPAVMAAVDQALK  101 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHH
Confidence            345555554433344555666 488888887655443333322    24777877777643     67788777776544


Q ss_pred             cCCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          267 KGITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++.+++ +|.. ...+  .-++.++++++.+
T Consensus       102 ~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  134 (277)
T 4fc7_A          102 EFGRIDILI-NCAAGNFLCPAGALSFNAFKTVMD  134 (277)
T ss_dssp             HHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HcCCCCEEE-ECCcCCCCCCcccCCHHHHHHHHH
Confidence            433566555 4442 1111  2356777777655

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=83.39  E-value=16  Score=32.41  Aligned_cols=101  Identities=10%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch----------HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP----------LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ  260 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~----------~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~  260 (360)
                      ..+++|.|+..-=..+.+.|.. .|.+|++..-.-.          .....++..|.++..+.+|-.     |.+.+++.
T Consensus        10 k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~   83 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVAA-DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIR-----DGDAVAAA   83 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHT-TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTT-----SHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHH
Confidence            4456665554433445566664 7888887653322          233445556888888877643     67888887


Q ss_pred             HHHHHhcCCCccEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          261 LEAAKAKGITVRALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       261 i~~~~~~g~~~k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      ++...++..++..++-+--....+.  -.+.++++++.+
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~  122 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNG  122 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            7765444335665554422222222  356777877655

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=83.19  E-value=9.5  Score=33.59  Aligned_cols=100  Identities=10%  Similarity=0.003  Sum_probs=57.8

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|.+|++.+-.-.......+..|.++..+.+|-.     |.+.++++++...++..+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLAR-AGARVVLADLPETDLAGAAASVGRGAVHHVVDLT-----NEVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCC-----CHHHHHHHHHHHHHHcCC
Confidence            3455555544333455566664 8889888776555555566666766666666533     677777777665444335


Q ss_pred             ccEEEEecCC-C-C-cc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPG-N-P-TG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~-N-P-TG--~~~~~~~l~~i~~  297 (360)
                      +..++ +|.. . + .+  .-++.+++++..+
T Consensus        86 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~  116 (271)
T 3tzq_B           86 LDIVD-NNAAHSDPADMLVTQMTVDVWDDTFT  116 (271)
T ss_dssp             CCEEE-ECCCCCCTTCCCGGGCCHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCCCccccCCHHHHHHHHH
Confidence            66555 4432 1 2 11  1346677776554

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=83.04  E-value=15  Score=32.20  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHH----HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-.......    +..|.++..+.+|-.     |.+.++++++...+
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~-----~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAE-AGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS-----NYEEVKKLLEAVKE   95 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCC-----CHHHHHHHHHHHHH
Confidence            3456665443333445556664 7888887765433333332    233777777766533     67778777765443


Q ss_pred             cCCCccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          267 KGITVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++.+++-+--....+  .-.+.++++++.+
T Consensus        96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~  128 (267)
T 1vl8_A           96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIE  128 (267)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence            323566555332222212  1246667766544

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=82.99  E-value=3.3  Score=40.76  Aligned_cols=108  Identities=7%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             CCCCCCCEEEcCChHHHHHHHHHHHcc----CC-CCE-----EEEcCCCch-------------------HHHHHHHHcC
Q 018147          186 FPADPNDIFLTDGASPAVHMMMQLLIR----SE-NDG-----ILCPIPQYP-------------------LYSASIALHG  236 (360)
Q Consensus       186 ~~~~~~~I~~t~Ga~~al~~~~~~l~~----~~-gd~-----Vlv~~P~y~-------------------~~~~~~~~~g  236 (360)
                      ..++++.|.++.....++...++.|.+    +. |..     .+...|.|+                   .+.+.+..++
T Consensus       102 L~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~ma~~K  181 (507)
T 1now_A          102 LLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNK  181 (507)
T ss_dssp             EEECSSEEEEEESSHHHHHHHHHHHHHHCEECTTSCEEEEEEEEEECCSCSEEEEEEESSSSCCCHHHHHHHHHHHHHTT
T ss_pred             EEEcCCeEEEEECCHHHHHHHHHHHHHHHhhccCceEEeccEEEEecCccceeeeeeccCCCCCCHHHHHHHHHHHHHhC
Confidence            346677888887766666555555432    11 111     233336554                   2445566678


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      .++..+.+.++.+|.+..+.+.+.-+.    | .-         .| |..++++|+++|++.|+++||-||-
T Consensus       182 lN~lh~HltDdq~wr~e~~~~P~Lt~~----G-a~---------~~-~~~YT~~di~eiv~yA~~rgI~VIP  238 (507)
T 1now_A          182 FNVLHWHIVDDQSFPYQSITFPELSNK----G-SY---------SL-SHVYTPNDVRMVIEYARLRGIRVLP  238 (507)
T ss_dssp             CCEEEEECCCSSCCCBCCSSCHHHHHH----H-SS---------ST-TSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEeeccCccceeeccchhhhhcc----c-Cc---------CC-CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            888888887777787765544443221    0 11         12 6789999999999999999998774

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=82.84  E-value=15  Score=32.79  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC------------chH---HHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ------------YPL---YSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~------------y~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.            -..   ....++..|.++..+.+|-.     |.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~  102 (299)
T 3t7c_A           29 KVAFITGAARGQGRSHAITLAR-EGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVR-----DFD  102 (299)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCC-----CHH
Confidence            4455655544333445556664 88888875432            111   22234456778888877643     678


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCC-CCcc---cCCCHHHHHHHHH
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPG-NPTG---QVLAEENQRAIVD  297 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~-NPTG---~~~~~~~l~~i~~  297 (360)
                      .++++++...++..++.++| +|.. ...+   .-++.++++++.+
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~  147 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVL-ANAALASEGTRLNRMDPKTWRDMID  147 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEE-ECCCCCCCCCCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEE-ECCCCCCCCCchhhCCHHHHHHHHH
Confidence            88887776544433566555 4442 2222   2346777777665

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=82.80  E-value=15  Score=32.85  Aligned_cols=100  Identities=13%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH---cC-CeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL---HG-GTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~---~g-~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      ..+++|.|+...=..+.+.|.. .|-.|++.+-.-.......+.   .+ .++..+.+|-.     |.+.++++++...+
T Consensus        42 k~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~  115 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFAR-AGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVS-----DPGSCADAARTVVD  115 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCC-----CHHHHHHHHHHHHH
Confidence            3455555544333445556664 888888877554444433333   33 46777766633     67787777766544


Q ss_pred             cCCCccEEEEecC-CCCccc--CCCHHHHHHHHH
Q 018147          267 KGITVRALVVINP-GNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~  297 (360)
                      +..++.++| +|. ..+.+.  -++.++|+++.+
T Consensus       116 ~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~  148 (293)
T 3rih_A          116 AFGALDVVC-ANAGIFPEARLDTMTPEQLSEVLD  148 (293)
T ss_dssp             HHSCCCEEE-ECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred             HcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence            433566555 443 222222  346777776655

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=82.78  E-value=9.9  Score=33.62  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++.+|++.+| ..+.+.|.. .|..|++.+-.-.......+..+.++..+.+|-.     |.+.+++.++...++..+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAG-AGYGVALAGRRLDALQETAAEIGDDALCVPTDVT-----DPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence            454545555555 344556664 8889988776655566666666666666666533     677787777665444335


Q ss_pred             ccEEEEecCC--CCcc--cCCCHHHHHHHHH
Q 018147          271 VRALVVINPG--NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       271 ~k~iil~~P~--NPTG--~~~~~~~l~~i~~  297 (360)
                      +.++| +|..  .+.+  .-++.++|+++.+
T Consensus       103 iD~lV-nnAg~~~~~~~~~~~~~~~~~~~~~  132 (272)
T 4dyv_A          103 VDVLF-NNAGTGAPAIPMEDLTFAQWKQVVD  132 (272)
T ss_dssp             CCEEE-ECCCCCCCSSCGGGCCHHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCCChhhCCHHHHHHHHH
Confidence            66555 4442  1212  2346677776554

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=82.50  E-value=10  Score=33.40  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             CCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCc-h---HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-P---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y-~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      ....+++|.|+..-=..+.+.|.. .|..|++..-.- .   .....++..|.++..+.+|-.     |.+.++++++..
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----d~~~v~~~~~~~  100 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAA-AGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVS-----QESEVEALFAAV  100 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHH
Confidence            334456665544333445566664 888887754322 2   223334455777877777643     678888777765


Q ss_pred             HhcCCCccEEEEecCCCCcc--cCCCHHHHHHHHH
Q 018147          265 KAKGITVRALVVINPGNPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       265 ~~~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~  297 (360)
                      .++..++.+++-+--..+.+  .-.+.++++++.+
T Consensus       101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~  135 (269)
T 4dmm_A          101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLD  135 (269)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            44433566555332222222  2346677776654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=82.31  E-value=13  Score=32.86  Aligned_cols=98  Identities=19%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++|.|+ .+| ..+.+.|.. .|..|++..-.-......   ++..|.++..+.+|-.     |.+.++++++...++
T Consensus        26 ~~lVTGas-~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           26 TAFVTGVS-SGIGLAVARTLAA-RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVT-----STDEVHAAVAAAVER   98 (279)
T ss_dssp             EEEEESTT-SHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             EEEEeCCC-CHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence            35555544 444 445556664 888888876554433333   3334777777777633     678888777765444


Q ss_pred             CCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      ..++.+++ +|.. .+.+  .-.+.++++++.+
T Consensus        99 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  130 (279)
T 3sju_A           99 FGPIGILV-NSAGRNGGGETADLDDALWADVLD  130 (279)
T ss_dssp             HCSCCEEE-ECCCCCCCSCGGGCCHHHHHHHHH
T ss_pred             cCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence            33566555 4432 2222  2346677765544

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=82.30  E-value=17  Score=31.89  Aligned_cols=101  Identities=13%  Similarity=0.048  Sum_probs=57.4

Q ss_pred             CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCc----------hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHH
Q 018147          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY----------PLYSASIALHGGTLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       190 ~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y----------~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      ...+++|.|+..-=..+.+.|.. .|.+|++..-.-          ......++..|.++..+.+|-.     |.+.+++
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~   79 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAAR-DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIR-----EEDQVRA   79 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTT-----CHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCC-----CHHHHHH
Confidence            34456665544333445556664 888888765332          2233344556888888887743     6788887


Q ss_pred             HHHHHHhcCCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          260 QLEAAKAKGITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      .++...++..++..++ +|.. ...+  .-.+.++++++.+
T Consensus        80 ~~~~~~~~~g~iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~  119 (274)
T 3e03_A           80 AVAATVDTFGGIDILV-NNASAIWLRGTLDTPMKRFDLMQQ  119 (274)
T ss_dssp             HHHHHHHHHSCCCEEE-ECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCEEE-ECCCcccCCCcccCCHHHHHHHHh
Confidence            7776544433566555 4442 1112  2356677776554

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=82.19  E-value=21  Score=33.85  Aligned_cols=108  Identities=13%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH-HHHccC-CCCEEEEcCCC------------chH--
Q 018147          164 SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM-QLLIRS-ENDGILCPIPQ------------YPL--  227 (360)
Q Consensus       164 ~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~-~~l~~~-~gd~Vlv~~P~------------y~~--  227 (360)
                      .++.|...-.+.-.+|.+....+. ....+++.+|++.+|-.++ ..|. . .|..|++..-.            |.+  
T Consensus        21 ~hp~gc~~~v~~qi~~~~~~~~~~-~~gKvaLVTGas~GIG~AiA~~LA-~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~   98 (405)
T 3zu3_A           21 AHPTGCEANVKKQIDYVTTEGPIA-NGPKRVLVIGASTGYGLAARITAA-FGCGADTLGVFFERPGEEGKPGTSGWYNSA   98 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCCT-TCCSEEEEESCSSHHHHHHHHHHH-HHHCCEEEEEECCCCCBTTBCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCcC-CCCCEEEEeCcchHHHHHHHHHHH-HhcCCEEEEEeCCchhhhhhcccccchhHH
Confidence            344566664444456776643321 3344555555555665443 3444 4 68787764311            111  


Q ss_pred             -HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          228 -YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       228 -~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                       ....++..|.++..+.+|-     -|.+.+++.++...++..++. ++++|.
T Consensus        99 ~~~~~~~~~G~~a~~i~~Dv-----td~~~v~~~v~~i~~~~G~ID-iLVNNA  145 (405)
T 3zu3_A           99 AFHKFAAQKGLYAKSINGDA-----FSDEIKQLTIDAIKQDLGQVD-QVIYSL  145 (405)
T ss_dssp             HHHHHHHHTTCCEEEEESCT-----TSHHHHHHHHHHHHHHTSCEE-EEEECC
T ss_pred             HHHHHHHhcCCceEEEECCC-----CCHHHHHHHHHHHHHHcCCCC-EEEEcC
Confidence             2334556788888887763     377888888877655544565 444554

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=82.13  E-value=10  Score=33.43  Aligned_cols=98  Identities=19%  Similarity=0.109  Sum_probs=58.5

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCcc
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR  272 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k  272 (360)
                      |++|.|++.-=..+.+.|.. .|-.|++.+-.-...... ...+.++..+.+|-.     |.+++++.++...++-.++.
T Consensus         5 vlVTGas~GIG~aia~~la~-~Ga~V~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~-----~~~~v~~~v~~~~~~~g~iD   77 (247)
T 3ged_A            5 VIVTGGGHGIGKQICLDFLE-AGDKVCFIDIDEKRSADF-AKERPNLFYFHGDVA-----DPLTLKKFVEYAMEKLQRID   77 (247)
T ss_dssp             EEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH-HTTCTTEEEEECCTT-----SHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH-HHhcCCEEEEEecCC-----CHHHHHHHHHHHHHHcCCCC
Confidence            55655554444455566664 899998877554333333 334566777766533     67888888776655444666


Q ss_pred             EEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          273 ALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       273 ~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      +++ +|. .++.+  .-++.++|+++.++
T Consensus        78 iLV-NNAG~~~~~~~~~~~~e~~~~~~~v  105 (247)
T 3ged_A           78 VLV-NNACRGSKGILSSLLYEEFDYILSV  105 (247)
T ss_dssp             EEE-ECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred             EEE-ECCCCCCCCCcccCCHHHHHHHHHH
Confidence            554 554 23323  23567888888774

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.96  E-value=16  Score=31.81  Aligned_cols=101  Identities=6%  Similarity=0.013  Sum_probs=58.3

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-.....   .+...|.++..+.+|-.     |.+.+++.++...++
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAE-QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDIT-----DDAQVAHLVDETMKA   85 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence            4456665554333445556664 88888887755443333   33445777888777643     678888888766555


Q ss_pred             CCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      ..++..++-+--. .+.+  .-.+.++++++.+
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~  118 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIE  118 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHH
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHH
Confidence            4466655543211 1222  2346677776554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=81.95  E-value=18  Score=31.40  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=55.9

Q ss_pred             CCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      ..+++|.| +.+| ..+.+.|.. .|..|++..-.-.....   .+...|.++..+.+|-.     |.+.++++++...+
T Consensus        30 k~vlITGa-s~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~  102 (262)
T 3rkr_A           30 QVAVVTGA-SRGIGAAIARKLGS-LGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLS-----HSDAIAAFATGVLA  102 (262)
T ss_dssp             CEEEESST-TSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEECC-CChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCC-----CHHHHHHHHHHHHH
Confidence            34555554 4444 344555664 78888887655444333   33345777777777643     67788877766544


Q ss_pred             cCCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          267 KGITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      +..++.+++.+--. .+.+  ...+.++++++.+
T Consensus       103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~  136 (262)
T 3rkr_A          103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA  136 (262)
T ss_dssp             HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHH
T ss_pred             hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHH
Confidence            43356666544222 2222  2346677666443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=81.28  E-value=17  Score=31.81  Aligned_cols=99  Identities=13%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC------------chH---HHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ------------YPL---YSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~------------y~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.            -..   ....+...|.++..+.+|-.     |.+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~   87 (278)
T 3sx2_A           14 KVAFITGAARGQGRAHAVRLAA-DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVR-----DRE   87 (278)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTT-----CHH
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCC-----CHH
Confidence            4456665544333455566664 88888876432            111   12233445778888877643     678


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      .+++.++...++..++.++|-+--..+.+.  +.++++++.+
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~  127 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVID  127 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHH
Confidence            888877765444335665553322222222  4677776554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=81.24  E-value=19  Score=31.03  Aligned_cols=101  Identities=14%  Similarity=0.058  Sum_probs=53.7

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-......   ++..|.++..+.+|-.     |.+.++++++...++
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAA-EGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVA-----DRQGVDAAVASTVEA   81 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence            3466665544333445556664 788888765443332222   2334667777776633     677887777654433


Q ss_pred             CCCccEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          268 GITVRALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      ..++.+++-+--..+.+.  -.+.++++++.+
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~  113 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMID  113 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence            335665554322222222  246666665543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.08  E-value=22  Score=31.44  Aligned_cols=101  Identities=14%  Similarity=0.032  Sum_probs=55.9

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCch-HHHHHHHH---c-CCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSASIAL---H-GGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~-~~~~~~~~---~-g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-. ......+.   . +.++..+.+|-.     |.+.++++++...
T Consensus        26 k~~lVTGas~GIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~   99 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAK-AGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMT-----KPSEIADMMAMVA   99 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTT-----CHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCC-----CHHHHHHHHHHHH
Confidence            4466666554433455556664 8889888765322 22222222   2 567777766633     6788888887665


Q ss_pred             hcCCCccEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          266 AKGITVRALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       266 ~~g~~~k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      ++..++.+++-+--..+.+.  -.+.++++++.+
T Consensus       100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~  133 (281)
T 3v2h_A          100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIA  133 (281)
T ss_dssp             HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            55445665554322222222  246677776554

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=80.89  E-value=11  Score=33.45  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC----------------chHHH---HHHHHcCCeEEEeecCCCCCcC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ----------------YPLYS---ASIALHGGTLVPYYLDEATGWG  251 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~----------------y~~~~---~~~~~~g~~~~~v~~~~~~~~~  251 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.                -....   ..++..+.++..+.+|-.    
T Consensus        12 k~~lVTGas~gIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~----   86 (286)
T 3uve_A           12 KVAFVTGAARGQGRSHAVRLAQ-EGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR----   86 (286)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT----
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC----
Confidence            4455665544333455566664 88888876432                11122   223345777887777643    


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEEecCC-CCccc---CCCHHHHHHHHH
Q 018147          252 LETSEVKKQLEAAKAKGITVRALVVINPG-NPTGQ---VLAEENQRAIVD  297 (360)
Q Consensus       252 ~d~~~L~~~i~~~~~~g~~~k~iil~~P~-NPTG~---~~~~~~l~~i~~  297 (360)
                       |.+.+++.++...++..++.++| +|.. ...+.   -.+.++++++.+
T Consensus        87 -~~~~v~~~~~~~~~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~  134 (286)
T 3uve_A           87 -DYDALKAAVDSGVEQLGRLDIIV-ANAGIGNGGDTLDKTSEEDWTEMID  134 (286)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCCEEE-ECCCCCCCCSCGGGCCHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHhCCCCEEE-ECCcccCCCCccccCCHHHHHHHHH
Confidence             67888887776544433566555 4442 22222   346777776665

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=80.84  E-value=11  Score=33.17  Aligned_cols=99  Identities=16%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             CCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCC-ch---HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          191 NDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQ-YP---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       191 ~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~-y~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      ..+++|.|+ .+| ..+.+.|.. .|..|++..-. -.   .....++..|.++..+.+|-.     |.+.+++.++...
T Consensus        19 k~~lVTGas-~gIG~aia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~   91 (270)
T 3is3_A           19 KVALVTGSG-RGIGAAVAVHLGR-LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIR-----QVPEIVKLFDQAV   91 (270)
T ss_dssp             CEEEESCTT-SHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred             CEEEEECCC-chHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHH
Confidence            345555544 444 445556664 88888875322 22   223334556778888877643     6788888777654


Q ss_pred             hcCCCccEEEEecCC-CCccc--CCCHHHHHHHHH
Q 018147          266 AKGITVRALVVINPG-NPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       266 ~~g~~~k~iil~~P~-NPTG~--~~~~~~l~~i~~  297 (360)
                      ++..++.+++ +|.. .+.+.  -++.++++++.+
T Consensus        92 ~~~g~id~lv-nnAg~~~~~~~~~~~~~~~~~~~~  125 (270)
T 3is3_A           92 AHFGHLDIAV-SNSGVVSFGHLKDVTEEEFDRVFS  125 (270)
T ss_dssp             HHHSCCCEEE-CCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HHcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence            4433565554 4432 22222  346777776655

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=80.81  E-value=21  Score=30.87  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             EEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          193 IFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       193 I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      +++|.| +.+| ..+.+.|.. .|..|++..-.-.....   .++..|.++..+.+|-.     |.+.++++++...++.
T Consensus         5 vlVTGa-s~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~   77 (256)
T 1geg_A            5 ALVTGA-GQGIGKAIALRLVK-DGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS-----DRDQVFAAVEQARKTL   77 (256)
T ss_dssp             EEEETT-TSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHHHT
T ss_pred             EEEECC-CChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-----CHHHHHHHHHHHHHHh
Confidence            555544 4444 445555664 78888876543322222   22334667777776533     6788888877654444


Q ss_pred             CCccEEEEecCCCCccc--CCCHHHHHHHHH
Q 018147          269 ITVRALVVINPGNPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       269 ~~~k~iil~~P~NPTG~--~~~~~~l~~i~~  297 (360)
                      .++..++-+--..+.+.  -++.++++++.+
T Consensus        78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~  108 (256)
T 1geg_A           78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYN  108 (256)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence            45665554322222221  245666655443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=80.69  E-value=15  Score=31.95  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=52.4

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++..-.-.......+..|.++..+.+|-.     |.+.++++++...++..+
T Consensus         6 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g~   79 (254)
T 1hdc_A            6 KTVIITGGARGLGAEAARQAVA-AGARVVLADVLDEEGAATARELGDAARYQHLDVT-----IEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence            3456665443333445556664 7888887664433344444444556666666533     677777777654433235


Q ss_pred             ccEEEEecCC-CCcc--cCCCHHHHHHHH
Q 018147          271 VRALVVINPG-NPTG--QVLAEENQRAIV  296 (360)
Q Consensus       271 ~k~iil~~P~-NPTG--~~~~~~~l~~i~  296 (360)
                      +.+++ +|.. .+.+  .-.+.++++++.
T Consensus        80 iD~lv-~nAg~~~~~~~~~~~~~~~~~~~  107 (254)
T 1hdc_A           80 VDGLV-NNAGISTGMFLETESVERFRKVV  107 (254)
T ss_dssp             CCEEE-ECCCCCCCSCGGGSCHHHHHHHH
T ss_pred             CCEEE-ECCCCCCCCChhhCCHHHHHHHH
Confidence            66555 4332 1111  124566665443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=80.69  E-value=18  Score=32.35  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=56.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.-......   ++..|.++..+.+|-.     |.+.++++++...++
T Consensus        32 k~vlVTGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFAR-RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVR-----HLDEMVRLADEAFRL  105 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCC-----CHHHHHHHHHHHHHh
Confidence            3456665544333445556664 888888877554444333   3344777777777643     678888777665444


Q ss_pred             CCCccEEEEecCC-CCccc--CCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG-NPTGQ--VLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG~--~~~~~~l~~i~~  297 (360)
                      ..++.++| +|.. ...+.  -.+.++++++.+
T Consensus       106 ~g~id~lv-nnAg~~~~~~~~~~~~~~~~~~~~  137 (301)
T 3tjr_A          106 LGGVDVVF-SNAGIVVAGPLAQMNHDDWRWVID  137 (301)
T ss_dssp             HSSCSEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred             CCCCCEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence            33566555 4432 22222  356677766554

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=80.24  E-value=24  Score=30.61  Aligned_cols=100  Identities=16%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEc-CCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCP-IPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~-~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++. ...-....   ..++..|.++..+.+|-.     |.+.++++++...+
T Consensus         9 k~vlVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~   82 (259)
T 3edm_A            9 RTIVVAGAGRDIGRACAIRFAQ-EGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLT-----NAAEVEAAISAAAD   82 (259)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCC-----CHHHHHHHHHHHHH
Confidence            4456665544333445556664 78888876 43333332   233445667777766633     67788877776544


Q ss_pred             cCCCccEEEEecCC-C-Ccc--cCCCHHHHHHHHH
Q 018147          267 KGITVRALVVINPG-N-PTG--QVLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~-N-PTG--~~~~~~~l~~i~~  297 (360)
                      +..++..++ +|.. . +.+  .-.+.++|+++.+
T Consensus        83 ~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~  116 (259)
T 3edm_A           83 KFGEIHGLV-HVAGGLIARKTIAEMDEAFWHQVLD  116 (259)
T ss_dssp             HHCSEEEEE-ECCCCCCCCCCTTTCCHHHHHHHHH
T ss_pred             HhCCCCEEE-ECCCccCCCCChhhCCHHHHHHHHH
Confidence            433565554 4432 1 222  2456777777665

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=80.19  E-value=23  Score=31.13  Aligned_cols=100  Identities=11%  Similarity=0.063  Sum_probs=56.0

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC------------ch---HHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ------------YP---LYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~------------y~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ..+++|.|+..-=..+.+.|.. .|..|++.+-.            -.   .....++..|.++..+.+|-.     |.+
T Consensus        11 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~   84 (281)
T 3s55_A           11 KTALITGGARGMGRSHAVALAE-AGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVK-----DRA   84 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCC-----CHH
Confidence            3455555544333445566664 88888876542            11   122234456778888777643     678


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      .+++.++...++..++..++ +|.. .+.+  .-.+.++++++.+
T Consensus        85 ~v~~~~~~~~~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  128 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAI-TNAGISTIALLPEVESAQWDEVIG  128 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEE-ECCCCCCCCCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence            88887776544433566555 4432 2222  2356777776554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=80.18  E-value=22  Score=30.88  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHH---cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++|.| +.+| ..+.+.|.. .|..|++.+-.-.......+.   .+.++..+.+|-.     |.+.++++++...++
T Consensus         8 ~vlVTGa-s~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            8 VVIITGG-SSGMGKGMATRFAK-EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVR-----NTDDIQKMIEQIDEK   80 (257)
T ss_dssp             EEEETTT-TSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             EEEEECC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence            3555554 4455 445556664 888888876554444433333   3567777776643     677887777665444


Q ss_pred             CCCccEEEEecCC-CCcc--cCCCHHHHHHHHH
Q 018147          268 GITVRALVVINPG-NPTG--QVLAEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~  297 (360)
                      ..++.+++ +|.. ...+  .-++.++|+++.+
T Consensus        81 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~  112 (257)
T 3imf_A           81 FGRIDILI-NNAAGNFICPAEDLSVNGWNSVIN  112 (257)
T ss_dssp             HSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             cCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence            33566555 4432 1111  2356677776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-26
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	3e-26
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	6e-24
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-21
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	5e-19
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	3e-18
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	5e-16
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	6e-16
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-14
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	2e-14
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	6e-14
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	7e-14
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	2e-12
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	4e-12
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	4e-12
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	1e-09
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	2e-08
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	3e-08
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	2e-07
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-06
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	8e-05
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	9e-05
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	8e-04
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	0.002
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	0.002

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  106 bits (266), Expect = 1e-26
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G+  LR+ IA  ++ ++G  ADP    +    +    +M       + + +L P 
Sbjct: 58  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 117

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P NP
Sbjct: 118 PAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNP 171

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG VL +++   I DF  +  L++++DEVY E+    + + +S   +    G  E+ I++
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVY-EHFIYDDARHYSIASL---DGMFERTITV 227

Query: 343 VSFQSVSK 350
             F   SK
Sbjct: 228 NGF---SK 232

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score =  105 bits (264), Expect = 3e-26
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD-PGDEVIVLS 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E         S      E  +++
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-------HFSPGRVAPEHTLTV 229

Query: 343 VSFQSVSK 350
                 +K
Sbjct: 230 NGA---AK 234

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 99.5 bits (247), Expect = 6e-24
 Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 13/188 (6%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   LR+ IA  ++  +G     ++I +T+G   ++  +M  +I    D ++ P 
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE-PGDEVIIPA 121

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   + L  GT V       T + +   ++++ +          + LV   P NP
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNP 175

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V   +  RAI     + GL +L+DE+Y E +   + +  S    S      E+ +  
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASPEA--YERSVVC 232

Query: 343 VSFQSVSK 350
             F   +K
Sbjct: 233 SGF---AK 237

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score = 90.8 bits (224), Expect = 7e-21
 Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 10/207 (4%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            ++  A   L+  P  A+  Y   +G+   R  IA  +   D        +        +
Sbjct: 47  QAVAEAEARLNAQPHGASL-YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105

Query: 203 VHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
             + +            G+    P +  + A  A  G  +  Y   +    G        
Sbjct: 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG---VRFND 162

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            L   K        L+     NPTG  L  +   A+++  K   L+   D  YQ      
Sbjct: 163 LLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM 222

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQ 346
           E+  ++ + +      G   +   SF 
Sbjct: 223 EEDAYAIRAI---ASAGLPALVSNSFS 246

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (210), Expect = 5e-19
 Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 8/213 (3%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGAS 200
            S+++A Q L +     T  Y    GI          +  +     +        T G +
Sbjct: 47  TSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT 104

Query: 201 PAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
            A+ +    L ++ +   +    P +P + +     G  +  Y   +A    L+   +  
Sbjct: 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALIN 164

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            L  A+A       L      NPTG     E  + +     ++G + L D  YQ      
Sbjct: 165 SLNEAQAG---DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL 221

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR 352
           E+     +  +          S      +   R
Sbjct: 222 EEDAEGLRAFAAMHKELIVASSYSKNFGLYNER 254

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 83.1 bits (204), Expect = 3e-18
 Identities = 29/227 (12%), Positives = 58/227 (25%), Gaps = 12/227 (5%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGAS 200
             + +  Q +          Y    G+   R   +      D             + G +
Sbjct: 51  PVVRKVEQRIANNSSLNHE-YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109

Query: 201 PAVHMMMQLLIR------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254
            A+ +  + L R      +++  +    P +  ++      G   +  Y    T      
Sbjct: 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLD 169

Query: 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
             ++  L   +        ++     NPTG     E  + I    K+  L    D  YQ 
Sbjct: 170 --LQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG 227

Query: 315 NVYV-PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW 360
                 EK   + +             S      +   R  +     
Sbjct: 228 FASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA 274

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 76.6 bits (187), Expect = 5e-16
 Identities = 26/206 (12%), Positives = 53/206 (25%), Gaps = 9/206 (4%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
           + + +A  ++          Y    G+       A      +             G S  
Sbjct: 49  NCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT 106

Query: 203 VHMMMQLLIR----SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
             + +           +  +  P P +  ++      G  L  Y   +     L+ +   
Sbjct: 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAM 166

Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318
           + +     K      L+     NPTG    +E  + +    KK  L+   D  YQ     
Sbjct: 167 EDISKIPEK---SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASG 223

Query: 319 PEKKFHSFKKVSRSMGYGEKDISLVS 344
              +     +     G         +
Sbjct: 224 DINRDAWALRHFIEQGIDVVLSQSYA 249

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 76.1 bits (186), Expect = 6e-16
 Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 56/288 (19%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 7   RALSVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54

Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C     +                               Y  S+G+  LR  I    + +
Sbjct: 55  YCKA---IKEGHNY-------------------------YGDSEGLPELRKAIVEREKRK 86

Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++    +    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFG-ALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 145

Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E   W  +  +++K++          +A+ VINP NPTG +  ++    I++   +  
Sbjct: 146 TIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEEILNIAGEYE 199

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG 351
           + +++DE+Y    Y  E                 KD+ ++    +SK 
Sbjct: 200 IPVISDEIYDLMTYEGEHISPGSL---------TKDVPVIVMNGLSKV 238

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.3 bits (176), Expect = 1e-14
 Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 6/215 (2%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            ++  A Q + +     T  Y+   G    +  +   I            +    G    
Sbjct: 47  RAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104

Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
              +    + + +  +    P +P + + +   G  +  Y   +A   G++   +K  L 
Sbjct: 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164

Query: 263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322
           AAK        L+     NPTG  L  +    I    +K G + L D  YQ       ++
Sbjct: 165 AAKKG---DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EE 220

Query: 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFF 357
             +  ++  S        +  S             
Sbjct: 221 DAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCL 255

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   R  IA  +E   G     DP  + +  GA+ A   ++  L     D  L 
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD-PGDAFLV 137

Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  L ++  ++++ F  +  + L+ DE+Y   V+   +     + +          
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257

Query: 340 ISLVSFQSVSKGRYFH 355
             +    S+SK     
Sbjct: 258 DLVHIVYSLSKDMGLP 273

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 70.0 bits (170), Expect = 6e-14
 Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   +  +   +    G     DPN + LT GA+ A    +  L     + +L 
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD-PGEAVLI 138

Query: 221 PIPQYPLYSASIALHGGTLV-PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP +   +    G  + P +   + G+ +  + +++  + A+ + + V+ ++V NP
Sbjct: 139 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 198

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG--- 336
            NP G  +       ++ F + +G+ L++DE+Y    +     F S  +V +        
Sbjct: 199 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDENS 257

Query: 337 EKDISLVSFQSVSK 350
           E    +    S+SK
Sbjct: 258 EVWQRVHVVYSLSK 271

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 70.0 bits (170), Expect = 7e-14
 Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 8/211 (3%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            S++ A +++          Y    G+  L    A  I          + +      S  
Sbjct: 50  PSVKAAEKLIHNDSSYNHE-YLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGT 108

Query: 203 VHMMMQLLI---RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
             + +          +  +    P +  + A     G     Y         L+ +    
Sbjct: 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN 168

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            ++ A    I    ++     NPTG     E    IVD    +  + L D  YQ      
Sbjct: 169 AIQKAPEGSI---FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD 225

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
                ++                V       
Sbjct: 226 -LDKDAYAVRLGVEKLSTVSPVFVCQSFAKN 255

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 11/224 (4%)

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYSHSQGIKG 171
               + E + L     +++  +    F      +E     +          Y+ + G   
Sbjct: 11  DYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYTKTFGYPP 68

Query: 172 LRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230
           L   +A+      G   DP   + +T G   A+    Q L+  E D ++   P +  Y  
Sbjct: 69  LTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEPFFDCYEP 127

Query: 231 SIALHGGTLVPYYLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQV 286
              + GG  V   L       G    +S  +        K  +    +V+N  N   G+V
Sbjct: 128 MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV 187

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            + E    +   C++  +V + DEVYQ  VY    +  S   + 
Sbjct: 188 FSREELELVASLCQQHDVVCITDEVYQWMVY-DGHQHISIASLP 230

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 33/258 (12%), Positives = 80/258 (31%), Gaps = 6/258 (2%)

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYS 164
           P+       + + E + L      L+  +    + A    +       +     A   Y+
Sbjct: 5   PKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQ-YT 63

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
              G   L   ++           +P   + +T GA  A++  +Q  +   ++ I+   P
Sbjct: 64  RGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIE-P 122

Query: 224 QYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
            +  Y   +   GG      L    TG  + +++        +A       +++IN  + 
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
               + +  +  +V    K+  VL   +   E++     +      +           S 
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSA 242

Query: 343 VSFQSVSKGRYFHFFSKW 360
               S++  +    +   
Sbjct: 243 GKTFSLTGWKIGWAYGPE 260

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 12/209 (5%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGL 172
           RE+L L +   ++  +   G      F  ++I++   ++L++   +A   Y  ++G   L
Sbjct: 20  RELLKLVETSDVISLA--GGLPAPETFPVETIKKIAVEVLEEHADKALQ-YGTTKGFTPL 76

Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
           R  +A  +E R   P    +I    G+  A+ ++ ++ +    D I+   P Y     + 
Sbjct: 77  RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN-PGDPIVVEAPTYLAAIQAF 135

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
             +    +   LD+         E  ++L     +   V  +       P G  ++ + +
Sbjct: 136 KYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQN--PAGVTMSVDRR 193

Query: 293 RAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           + +++   +   +++ D  Y E  Y  E 
Sbjct: 194 KKLLELANEYDFLIVEDGPYSELRYSGEP 222

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 43/181 (23%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQ 224
           L  TI    E      A    I    G +  +H ++  L  +           ++   P 
Sbjct: 105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164

Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284
           YP++             +  + A                           +V +P NP G
Sbjct: 165 YPVFREQTKYFDKKGYVWAGNAA------------NYVNVSNPE--QYIEMVTSPNNPEG 210

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
            +              +  ++     +Y    Y P   +             ++DI L +
Sbjct: 211 LL--------------RHAVIKGCKSIYDMVYYWPH--YTPI------KYKADEDILLFT 248

Query: 345 F 345
            
Sbjct: 249 M 249

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           + F  +  L      ++    QG  S        + + +  GR    Y+   G+  LR+ 
Sbjct: 13  SIFPRMSGLAQRLGAVNLG--QGFPSNPPPPFLLEAVRRALGRQDQ-YAPPAGLPALREA 69

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           +A      + F  +P  + +T GA+ A+++++Q  +    D ++   P + +Y     L 
Sbjct: 70  LA------EEFAVEPESVVVTSGATEALYVLLQS-LVGPGDEVVVLEPFFDVYLPDAFLA 122

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           G       LD                   KA     RAL++  P NPTG V  E    AI
Sbjct: 123 GAKARLVRLDLTPEGFRLDLS-----ALEKALTPRTRALLLNTPMNPTGLVFGERELEAI 177

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
               +   L L++DEVY E  Y    +        R+   
Sbjct: 178 ARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTV 217

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHS GI  LR+  A+  + R      P ++ L         +    +I +  D IL   
Sbjct: 60  YSHSAGIWELREAFASYYKRRQRVDVKPENV-LVTNGGSEAILFSFAVIANPGDEILVLE 118

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P Y  Y+A   + G  L+P       G+ +  +      E  K   ++       NP NP
Sbjct: 119 PFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLS-------NPCNP 171

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
           TG V  ++  R +V+  ++ GL L+ DEVY E V+  E    
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA 213

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 25/175 (14%), Positives = 47/175 (26%), Gaps = 7/175 (4%)

Query: 114 PITFFREVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQG 168
             +  RE+L        +      G      F    +    + + +     T  YS ++G
Sbjct: 24  KSSIIREILKFAADKDAISFG--GGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEG 81

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
              L+  I   +E   G      D  +    S     ++  L   +    +   P Y   
Sbjct: 82  DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGA 141

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283
             +   +    V   L++             + +            VV N  NP 
Sbjct: 142 INAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPA 196

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+      L+    D ++   
Sbjct: 61  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD-PGDEVIVFS 119

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   I L GGT+       +  +     E  + L   K K +     ++ +P NP
Sbjct: 120 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVGKTKAV-----LINSPNNP 173

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V   E    +V   KK    +++DEVY   VY        F  +       ++ + +
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-----TDEFTSILDVSEGFDRIVYI 228

Query: 343 VSF 345
             F
Sbjct: 229 NGF 231

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 107 PQS-LGQQPITFFREVLALCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYS 164
           PQS L Q   T F ++ AL      ++ S+    F     ++    +   +   A   Y+
Sbjct: 4   PQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQER--LAHHVAQGANQ-YA 60

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
              G++ LR+ IA   E   G+  D  +DI +T GA+ A++  +  L+R+ ++ I     
Sbjct: 61  PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPS 120

Query: 224 QYPLY 228
                
Sbjct: 121 YDSYA 125

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS  +  +     IA     +     D   +         V  +++    +    +    
Sbjct: 32  YSRWKNDE-FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVV-IHT 89

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGW 250
           P Y  +  +I  +  T++P  L++    
Sbjct: 90  PAYDAFYKAIEGNQRTVMPVALEKQADG 117

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 29/212 (13%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN 215
           AY+ S+    L+D         + F  D   I        A +++  +L++         
Sbjct: 70  AYAGSRNYYDLKDKAK------ELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAK 121

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATG-------WGLETSEVKKQLEAAKAKG 268
           + +      +   +A + L+G   +    ++A          G    +  K+  A     
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181

Query: 269 ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
             V  +  +   +  GQ ++  N + + +  K+ G+ ++ D           K       
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKA------ 235

Query: 329 VSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW 360
             R   Y    I  V F            +K 
Sbjct: 236 --RDPKYKNATIKEVIFDMYKYADALTMSAKK 265

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 5/200 (2%)

Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
               ++   +  + T+   ++ R  +    + I  T G  PAV   ++   +  +  I+ 
Sbjct: 60  TVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIII 119

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
               YP + A        +    L++   + ++  +++K  +    K     AL+  +P 
Sbjct: 120 TPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNK-----ALLFCSPH 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NP G+V  ++  + I D   K  L+L +DE++ + +    +         +         
Sbjct: 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFT 234

Query: 341 SLVSFQSVSKGRYFHFFSKW 360
           +     +++     +   K 
Sbjct: 235 APSKTFNIAGMGMSNIIIKN 254

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 15/161 (9%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADP----NDIFLTDGASPAVHMMMQLLIRSENDG 217
           A+S S+    L +++      +   P         I++       +    Q      +  
Sbjct: 69  AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI----PVLIKKREQEKGLDRSKM 124

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEAT-----GWGLETSEVKKQLEAAKAKGITVR 272
           +      +        ++G T+   Y+ EA             +++      +  G    
Sbjct: 125 VAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV 184

Query: 273 ALVVINPGNPT--GQVLAEENQRAIVDFCKKEGLVLLADEV 311
             +V    + +  GQ ++  N +A+    KK  + ++ D  
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSA 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.97
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.96
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.96
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.9
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.88
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.8
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.79
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.73
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.65
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.6
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.56
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.56
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.52
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.51
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.5
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.48
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.48
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.45
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.42
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.42
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.41
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.41
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.4
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.38
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.38
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.37
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.36
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.36
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.34
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.32
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.3
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.25
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.23
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.23
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.23
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.21
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.2
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.19
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.17
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.12
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.09
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.02
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	98.99
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.93
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.91
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.76
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.74
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.7
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.66
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.65
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.61
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.58
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.56
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.55
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.42
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.42
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.4
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.36
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.36
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.32
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.16
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	96.9
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	96.16
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.59
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.23
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.06
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.98
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.68
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.26
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.22
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.88
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.8
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.66
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.41
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.04
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.92
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.84
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.73
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.55
d2d13a1	226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	86.03
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.32
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.31
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.15
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.09
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.77
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.68
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.52
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.53
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.47
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.21
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.37
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.98
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.9
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.6
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.56
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	81.5
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	80.74

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-45  Score=353.81  Aligned_cols=244  Identities=21%  Similarity=0.348  Sum_probs=219.7

Q ss_pred             ccccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccC
Q 018147           58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (360)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~  137 (360)
                      |..+++++.+++++...++..+|+++++++         .+||+|++|+|++                            
T Consensus         1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G---------~~vi~l~~g~p~~----------------------------   43 (382)
T d1b5pa_           1 MRGLSRRVQAMKPSATVAVNAKALELRRQG---------VDLVALTAGEPDF----------------------------   43 (382)
T ss_dssp             CCCCCHHHHHCCCCHHHHHHHHHHHHHHTT---------CCCEECCCSSCSS----------------------------
T ss_pred             ChHHHHHHHhCCCCHHHHHHHHHHHHHhCC---------CCeEECCCCCCCC----------------------------
Confidence            356789999999888888999999988762         4799999999997                            


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCE
Q 018147          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~  217 (360)
                       .+|+.+++++.+.+.+    +..+|++..|.++||+++++++.+++|+.+++++|++|+|+++++..++++++. +||.
T Consensus        44 -~~p~~i~~a~~~~~~~----~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~-~gd~  117 (382)
T d1b5pa_          44 -DTPEHVKEAARRALAQ----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD-PGDE  117 (382)
T ss_dssp             -CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC-TTCE
T ss_pred             -CCCHHHHHHHHHHHhc----CCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCC-CCCE
Confidence             5688999999888876    366899999999999999999999999999999999999999999999999994 9999


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |++++|+|+.|...++.+|.+++.+++.++++|.+|++++++++++      ++++++++|||||||.+++.+++++|++
T Consensus       118 vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~  191 (382)
T d1b5pa_         118 VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALAR  191 (382)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHH
Confidence            9999999999999999999999999998888899999999998866      7999999999999999999999999999


Q ss_pred             HHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++|++||+||+|.++.|++.  +.+.....       ++ ++|+++||||.|+ +|+|+||
T Consensus       192 ~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-------~~-~~i~~~s~SK~~~~~GlR~G~  245 (382)
T d1b5pa_         192 LAVEHDFYLVSDEIYEHLLYEGE--HFSPGRVA-------PE-HTLTVNGAAKAFAMTGWRIGY  245 (382)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSC--CCCGGGTC-------TT-TEEEEEESTTTTTCGGGCCEE
T ss_pred             HHHHcCeEEEEEccccceecCCC--CCCHHHcC-------CC-CEEEEecchhhccCcHhheEE
Confidence            99999999999999999999875  33322221       34 6899999999997 8999999

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=5.4e-45  Score=352.20  Aligned_cols=245  Identities=22%  Similarity=0.328  Sum_probs=220.3

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++..+++++..+|..+|+++++++         .+||+|++|+|++                             ..
T Consensus         3 ~~~~~~~~~~s~~~~i~~~a~~~~~~g---------~~vi~l~~G~p~~-----------------------------~~   44 (388)
T d1j32a_           3 LAARVESVSPSMTLIIDAKAKAMKAEG---------IDVCSFSAGEPDF-----------------------------NT   44 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTTT---------CCCEECCCSSCSS-----------------------------CC
T ss_pred             hhhHhhcCCcCHHHHHHHHHHHHHHCC---------CCeEECCCCCCCC-----------------------------CC
Confidence            567888899888888999999987762         4899999999997                             55


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+++++.+.+++    +..+|++..|.++||+++|+++.+++|..+++++|++|+|+++++..++++++ ++||+|++
T Consensus        45 p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vlv  119 (388)
T d1j32a_          45 PKHIVEAAKAALEQ----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII  119 (388)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh-CCCCEEEE
Confidence            88899999888876    36689999999999999999999999999999999999999999999999999 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|+.|...++..|++++.+++..+++|.+|+++|++++++      ++++++++|||||||.+++.+++++|+++|+
T Consensus       120 ~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~  193 (388)
T d1j32a_         120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV  193 (388)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccc
Confidence            9999999999999999999999998888899999999998876      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++|++||+||+|.++.|++. ++.++....+...    + ++|+++||||.|+ +|+|+||
T Consensus       194 ~~~~~iI~De~Y~~~~~~~~-~~~s~~~~~~~~~----~-~~i~~~S~SK~~~~~GlRvG~  248 (388)
T d1j32a_         194 EAGLWVLSDEIYEKILYDDA-QHLSIGAASPEAY----E-RSVVCSGFAKTYAMTGWRVGF  248 (388)
T ss_dssp             HHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHH----H-TEEEEEESTTTTTCTTTCCEE
T ss_pred             cCCeEEEchhhhhcccccCC-CCCCHHHhCcccc----c-ceeEecCChhhhhcchhHeEE
Confidence            99999999999999999875 4667655443221    1 5899999999997 8999999

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.7e-43  Score=337.06  Aligned_cols=243  Identities=24%  Similarity=0.449  Sum_probs=209.1

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++++..++|++|. +...|+++++++         .+||+|++|+|...+.                          .+|
T Consensus         5 s~r~~~~~~~ir~-i~~~a~~l~~~G---------~~vi~l~~G~P~~~df--------------------------~~p   48 (395)
T d1xi9a_           5 SKRALSVEYAIRD-VVLPARELEKKG---------IKVIRLNIGDPVKFDF--------------------------QPP   48 (395)
T ss_dssp             CHHHHTCCC--------CHHHHHHTT---------CCCEECCCCCGGGTTC--------------------------CCC
T ss_pred             hhccccCcHHHHH-HHHHHHHHHHCC---------CCeEECCCCCCCCCCC--------------------------CCC
Confidence            4778888898776 778899988762         4799999999954221                          457


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      +.+++++.+.+++    +.++|++..|.++||+++|+++++++|+.+++++|++|+|+++++.+++.+++ ++||+|+++
T Consensus        49 ~~i~~a~~~a~~~----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~-~~Gd~vlv~  123 (395)
T d1xi9a_          49 EHMKEAYCKAIKE----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVP  123 (395)
T ss_dssp             HHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc-CCCCEEEEc
Confidence            8888998888876    36679999999999999999999999999999999999999999999999999 499999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      +|+|+.|...++..|++++.+++..+++|.+|++++++.+.+      ++++++++|||||||.+++.+++++|+++|++
T Consensus       124 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~  197 (395)
T d1xi9a_         124 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGE  197 (395)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhh
Confidence            999999999999999999999988888899999999998876      79999999999999999999999999999999


Q ss_pred             cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++||+||+|.++.|++.  ..+......      .+ ++|+++||||.|+ +|+|+||
T Consensus       198 ~~~~ii~De~y~~~~~~~~--~~~~~~~~~------~~-~vi~~~S~SK~~~~~GlRvG~  248 (395)
T d1xi9a_         198 YEIPVISDEIYDLMTYEGE--HISPGSLTK------DV-PVIVMNGLSKVYFATGWRLGY  248 (395)
T ss_dssp             HTCCEEEECTTTTCBSSSC--CCCHHHHCS------SS-CEEEEEESTTTTCCGGGCCEE
T ss_pred             cCeeEEecccccccccccc--ccchhhcCC------CC-CEEEEeCcchhcccchhhcEe
Confidence            9999999999999999764  555544422      23 6899999999997 7999998

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.1e-41  Score=328.11  Aligned_cols=217  Identities=25%  Similarity=0.418  Sum_probs=193.6

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ++||+|++|+|++                             .+|+.+++++.+.+++    +..+|++..|.++||+++
T Consensus        25 ~dvi~l~~g~p~~-----------------------------~~p~~v~~~~~~a~~~----~~~~Y~~~~G~~~lr~ai   71 (388)
T d1gdea_          25 KDVISLGIGEPDF-----------------------------DTPQHIKEYAKEALDK----GLTHYGPNIGLLELREAI   71 (388)
T ss_dssp             TTCEECCCCSCCS-----------------------------CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHH
T ss_pred             CCeEECCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CccCCCCCcCCHHHHHHH
Confidence            4799999999987                             5688899999888876    366899999999999999


Q ss_pred             HHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~-~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+|+.++++.. ..+++|++|+|+++++..++.+++. +||+|+++.|+|+.|...++.+|++++.++++++++|++|++
T Consensus        72 a~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~-~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  150 (388)
T d1gdea_          72 AEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVD  150 (388)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCC-TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHH
T ss_pred             HHHHHhhccccCCChheeeeccCcchHHHHHHHHhcC-CCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHH
Confidence            99998877654 5567899999999999999999994 999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      +|++++++      ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. ++.++.....    
T Consensus       151 ~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~-~~~~~~~~~~----  219 (388)
T d1gdea_         151 ELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLDG----  219 (388)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTT----
T ss_pred             HHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC-CCCChhhccC----
Confidence            99998876      799999999999999999999999999999999999999999999998875 4666654421    


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                       ..+ ++|+++||||.|+ +|+|+||
T Consensus       220 -~~~-~~i~~~S~SK~~~~~GlR~G~  243 (388)
T d1gdea_         220 -MFE-RTITVNGFSKTFAMTGWRLGF  243 (388)
T ss_dssp             -CGG-GEEEEEESTTTTTCGGGCCEE
T ss_pred             -CCC-eEEEEeCChhhccCccccEEE
Confidence             123 6899999999997 8999999

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-40  Score=319.59  Aligned_cols=243  Identities=25%  Similarity=0.366  Sum_probs=214.4

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++|+.+++-+...++..+|+++++.+         ++||+|++|+|++                             .+
T Consensus         1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G---------~~vI~l~~G~p~~-----------------------------~~   42 (375)
T d1o4sa_           1 VSRRISEIPISKTMELDAKAKALIKKG---------EDVINLTAGEPDF-----------------------------PT   42 (375)
T ss_dssp             CCHHHHHSCCCSSHHHHHHHHHHHHTT---------CCCEECCCSSCSS-----------------------------CC
T ss_pred             CchhhhhCCCCHHHHHHHHHHHHHHCC---------CCeEECCCcCCCC-----------------------------CC
Confidence            467788888888888889998888662         4799999999997                             45


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+++++.+.+.+    +..+|++..|.++||+++++++.+++|..+++++|++|+|+++|+..++.+|+. +||+|++
T Consensus        43 p~~i~~~~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~vlv  117 (375)
T d1o4sa_          43 PEPVVEEAVRFLQK----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD-PGDEVIV  117 (375)
T ss_dssp             CHHHHHHHHHHHTT----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC-TTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhC-CCCEEEE
Confidence            88899998888765    356899999999999999999999999999999999999999999999999994 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~  300 (360)
                      ++|+|+.|...+...|...+.+++++++.|.+|.+.++....+      ++++++++|||||||.+++.+++++|+++|+
T Consensus       118 ~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~  191 (375)
T d1o4sa_         118 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK  191 (375)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ccCccccchhhhhccccccccccccccccccchhHHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHH
Confidence            9999999999999999999999999888899999998876655      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       301 ~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++||+||+|.++.++..  .........    . .+ ++|+++||||.|+ +|+|+||
T Consensus       192 ~~~~~ii~De~y~~~~~~~~--~~~~~~~~~----~-~~-~~i~~~S~SK~~~l~G~R~G~  244 (375)
T d1o4sa_         192 KRNFYIISDEVYDSLVYTDE--FTSILDVSE----G-FD-RIVYINGFSKSHSMTGWRVGY  244 (375)
T ss_dssp             HHTCEEEEECTTTTSBCSSC--CCCHHHHCS----S-ST-TEEEEEESTTTTTCGGGCCEE
T ss_pred             HcCCceehHhhhcccccccc--ccccccccC----C-CC-CEEEEeechhhccCCcccccc
Confidence            99999999999999888765  444433321    1 23 6899999999998 8999998

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=9.6e-40  Score=318.02  Aligned_cols=243  Identities=18%  Similarity=0.258  Sum_probs=209.1

Q ss_pred             ccChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCC
Q 018147           60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (360)
Q Consensus        60 ~~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~  139 (360)
                      +++.++..++.++..++...+.+              .++|||++|+|++                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~I~L~~G~Pd~-----------------------------~   39 (418)
T d2r5ea1           3 DLPKRYQGSTKSVWVEYIQLAAQ--------------YKPLNLGQGFPDY-----------------------------H   39 (418)
T ss_dssp             CCCGGGTTCCCCHHHHHHHHHHH--------------HCCEECSSSCCSS-----------------------------C
T ss_pred             chhhhhcCCCCCHHHHHHHHhcC--------------CCCEEccCCCCCC-----------------------------C
Confidence            35678888899988777654443              3799999999997                             4


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      .|+.+++++.+.+.+... ..++|++..|.++||++||+++.+++|..+++ ++|++|+|+++|+..+++.++ ++||.|
T Consensus        40 ~p~~i~eal~~a~~~~~~-~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-~~gd~v  117 (418)
T d2r5ea1          40 APKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEV  117 (418)
T ss_dssp             CCHHHHHHHHHHHTCSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEE
T ss_pred             CCHHHHHHHHHHHhCCCc-cCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc-ccccce
Confidence            578888888888876543 46789999999999999999999999999985 789999999999999999999 599999


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCC--------CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEAT--------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      ++++|+|+.|...+...|++++.+++++++        .|.++.+++.+....      +++++++++||||||.+++.+
T Consensus       118 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e  191 (418)
T d2r5ea1         118 IIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRA  191 (418)
T ss_dssp             EEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred             eccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc------cccceecCCcCccccccccHH
Confidence            999999999999999999999999987543        367788888877655      799999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++|+++|++++++||+||+|.++.|++. +..++..+..      ...++|+++|+||.|+ +|+||||
T Consensus       192 ~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~s~~~~~~------~~~~~i~~~S~SK~~~~pGlRiG~  255 (418)
T d2r5ea1         192 ELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTLPG------MWERTITIGSAGKTFSLTGWKIGW  255 (418)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTT------TGGGEEEEEEHHHHTTCGGGCCEE
T ss_pred             HHHHHhhhhhcCCeeeecccchhhhccCCC-cccccccccc------ccceeeeeecCCccccCCCccccc
Confidence            999999999999999999999999999875 4556554422      1126899999999997 8999998

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.7e-39  Score=315.42  Aligned_cols=225  Identities=20%  Similarity=0.307  Sum_probs=192.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ++||+|++|+|+...                         +...++.+++++.+.+...   ...+|++..|.++||+++
T Consensus        30 ~~vI~L~~G~p~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~LReai   81 (412)
T d1bw0a_          30 KPIIKLSVGDPTLDK-------------------------NLLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAV   81 (412)
T ss_dssp             SCCEECCCCCTTTTS-------------------------CSCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHH
T ss_pred             CCcEECcCCCCCCCC-------------------------CccccHHHHHHHHHHhhCC---CCCCCCCCcCCHHHHHHH
Confidence            579999999998621                         1134677888888777653   367899999999999999


Q ss_pred             HHHHHhhcC------CCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCc
Q 018147          177 AAGIEARDG------FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW  250 (360)
Q Consensus       177 a~~l~~~~g------~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  250 (360)
                      |+|++++++      ..+++++|++|+|+++++..++++++. +||+|++++|+|+.|...++.+|++++.++++++++|
T Consensus        82 a~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~-~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~  160 (412)
T d1bw0a_          82 ATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW  160 (412)
T ss_dssp             HHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC-TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             HHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhc-cccceeeeeccchhhhhhhhccCcccccccccccccc
Confidence            999998864      458899999999999999999999994 9999999999999999999999999999999988889


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHH
Q 018147          251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS  330 (360)
Q Consensus       251 ~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~  330 (360)
                      .++++++++.+.+      ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++.. +.+.....
T Consensus       161 ~~~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~-~~~~~~~~  233 (412)
T d1bw0a_         161 EADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKD-PNATFTSV  233 (412)
T ss_dssp             EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSC-TTCCCCCT
T ss_pred             chhhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCC-Cccccccc
Confidence            9999999988766      7999999999999999999999999999999999999999999999998753 22222111


Q ss_pred             HhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          331 RSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       331 ~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..+   ....++++++||||.|+ +|+|+||
T Consensus       234 ~~~---~~~~~~~~~~s~SK~~~~~G~RvG~  261 (412)
T d1bw0a_         234 ADF---ETTVPRVILGGTAKNLVVPGWRLGW  261 (412)
T ss_dssp             TSS---CCSCCEEEEEESTTTTSCGGGCCEE
T ss_pred             ccc---ccccccccccccCccCccCCCCccc
Confidence            111   12336899999999986 7999998

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=1.7e-38  Score=306.86  Aligned_cols=217  Identities=19%  Similarity=0.265  Sum_probs=189.3

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      ++||+|++|+|++                             ..|+.+++++.+.+++.    .++|++  |.++||+++
T Consensus        31 ~~vi~l~~g~pdf-----------------------------~~p~~v~~al~~~~~~~----~~~Y~~--g~~~Lr~ai   75 (394)
T d1c7na_          31 NEVVPLSVADMEF-----------------------------KNPPELIEGLKKYLDET----VLGYTG--PTEEYKKTV   75 (394)
T ss_dssp             TTCCCCCSSSCSS-----------------------------CCCHHHHHHHHHHHHHC----CCSSBC--CCHHHHHHH
T ss_pred             CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC----CcCCCC--CCHHHHHHH
Confidence            5899999999998                             56899999999988762    567864  689999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC-CCCcCCCHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~  255 (360)
                      |+|+++++|+.+++++|++|+|+++++..++++++. |||+|+++.|.|++|...++..|++.+.++... +..|.+|.+
T Consensus        76 a~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~-pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~  154 (394)
T d1c7na_          76 KKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTK-PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQ  154 (394)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHH
T ss_pred             HHHHHHhcCCCCCCcceEeeccchhhhhhhhccccc-cccccccccCcccchhhHHhhhhhcccccccccccccccchhh
Confidence            999999999999999999999999999999999994 999999999999999999999999999988653 446778999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      .++..+..     +++++++++|||||||.+++.+++++|+++|++++++||+||+|.+++|++. .+.+.......+. 
T Consensus       155 ~~~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~-  227 (394)
T d1c7na_         155 KLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQLA-  227 (394)
T ss_dssp             HHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHHH-
T ss_pred             hhhhhhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCc-cccchhhhhcccc-
Confidence            88877643     2799999999999999999999999999999999999999999999999875 3445444333332 


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         + +++++.|+||+|+ +|+|+||
T Consensus       228 ---~-~~i~~~s~SK~~~~~G~R~g~  249 (394)
T d1c7na_         228 ---D-KTITFTAPSKTFNIAGMGMSN  249 (394)
T ss_dssp             ---T-TEEEEECSHHHHTCGGGCCEE
T ss_pred             ---c-ceeeccccccccccccccccc
Confidence               2 5899999999997 7999998

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.7e-39  Score=308.66  Aligned_cols=238  Identities=28%  Similarity=0.388  Sum_probs=201.8

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      ++|+...+.++..++...+++.++++         .+||+|++|+|++                             .+|
T Consensus         2 ~~r~~~~~~~~i~~l~~~a~~~~~~g---------~~vi~l~~G~p~~-----------------------------~~p   43 (389)
T d2gb3a1           2 SDRVLLTEESPIRKLVPFAEMAKKRG---------VRIHHLNIGQPDL-----------------------------KTP   43 (389)
T ss_dssp             CHHHHSCCCCTTGGGHHHHHHHHHTT---------CEEEECSSCCCCS-----------------------------CCC
T ss_pred             ChhhhcCCCCHHHHHHHHHHHHHHcC---------CCEEECCCCCCCC-----------------------------CCC
Confidence            57888888888888999988887762         5899999999997                             457


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEc
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~  221 (360)
                      +.+++++.+..   .  ...+|++..|.++||+++|+|+.+++|+.+++++|++|+|+++++..++..++ ++||.|+++
T Consensus        44 ~~~~~al~~~~---~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~-~~gd~V~i~  117 (389)
T d2gb3a1          44 EVFFERIYENK---P--EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL  117 (389)
T ss_dssp             THHHHHHHHTC---C--SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHhcC---C--CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc-cCCCeEEEe
Confidence            77777765432   1  37789999999999999999999999999999999999999999999999999 599999999


Q ss_pred             CCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 018147          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       222 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~  301 (360)
                      .|+|+.|...++..|+.++.++.++++. ..+.+.+...+.+      ++++++++|||||||.+++.+++++|+++|++
T Consensus       118 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~  190 (389)
T d2gb3a1         118 EPFYANYNAFAKIAGVKLIPVTRRMEEG-FAIPQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER  190 (389)
T ss_dssp             ESCCTHHHHHHHHHTCEEEEEECCGGGT-SCCCTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCccccccccccCccccccccccccc-cchhhhhhhhccc------CccEEEeCCCCccccccchHHHHHHHHhhccc
Confidence            9999999999999999999999876543 3444555544444      78999999999999999999999999999999


Q ss_pred             cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++||+||+|.++.+++.  +.+.....       .+ +++++.|+||.++ +|+|+||
T Consensus       191 ~~~~iI~De~y~~~~~~~~--~~~~~~~~-------~~-~~~v~~s~sK~~~~~GlRiG~  240 (389)
T d2gb3a1         191 HGLFLIVDEVYSEIVFRGE--FASALSIE-------SD-KVVVIDSVSKKFSACGARVGC  240 (389)
T ss_dssp             TTCEEEEECTTTTCBCSSC--CCCGGGSC-------CT-TEEEEEESTTTTTCGGGCCEE
T ss_pred             CCEEEEEeccccccccccc--cccccccc-------cc-cccccccccccccCcccceee
Confidence            9999999999999999875  44433221       23 5788999999875 6999998

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=308.84  Aligned_cols=240  Identities=23%  Similarity=0.345  Sum_probs=200.7

Q ss_pred             ChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCC
Q 018147           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (360)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p  141 (360)
                      .+|+..+.....-++...+    ++          .+||+|++|+|++                             ..|
T Consensus         4 ~~r~~~~~~~~~~~~~~~~----~~----------~dvI~l~~G~p~~-----------------------------~~p   40 (418)
T d1w7la_           4 ARRLDGIDYNPWVEFVKLA----SE----------HDVVNLGQGFPDF-----------------------------PPP   40 (418)
T ss_dssp             CGGGTTCCCCTHHHHHHHH----HT----------SCCEECCCCSCSS-----------------------------CCC
T ss_pred             CccccCCCCCHHHHHHHHh----CC----------CCCEECCCCCCCC-----------------------------CCC
Confidence            3566666766665443332    22          4899999999997                             457


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      +.+++++.+.+.+..  ..++|++..|.++||+++|+++.+++|+.+++ ++|++|+|+++++..++++++ ++||.|++
T Consensus        41 ~~v~~a~~~al~~~~--~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~g~~vlv  117 (418)
T d1w7la_          41 DFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVII  117 (418)
T ss_dssp             HHHHHHHHHHTSSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc-cCCceeec
Confidence            888888888776533  36689999999999999999999999998885 689999999999999999999 49999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCC----------CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDE----------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      ++|+|+.|...+...|++++.+++.+          +.+|.+|.+++.....+      +++++++++||||||.+++.+
T Consensus       118 ~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~  191 (418)
T d1w7la_         118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSRE  191 (418)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred             cccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc------cccceeccCcCCcccccccHH
Confidence            99999999999999999999888653          23577888877766554      788999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++++|+++|++++++||+||+|.++.|++. ++.++..+. +.    .+ ++|++.|+||.|+ +|+|+||
T Consensus       192 ~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~-~~~~~~~~~-~~----~~-~~i~~~S~SK~~~~pG~RvG~  255 (418)
T d1w7la_         192 ELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLP-GM----WE-RTLTIGSAGKTFSATGWKVGW  255 (418)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGST-TT----GG-GEEEEEEHHHHTTCGGGCCEE
T ss_pred             HHHHHHHHHHhcCCCchhhhhhHHhhcCCC-CCCCHHHcc-cc----cc-ccceecccCccccCCCCcccc
Confidence            999999999999999999999999999875 466666542 11    23 6899999999876 7999999

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-37  Score=294.64  Aligned_cols=213  Identities=18%  Similarity=0.287  Sum_probs=188.3

Q ss_pred             ceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHH
Q 018147           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (360)
Q Consensus        99 vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~  178 (360)
                      +|+|+||+||+                             +.|+.+.+++.+.+.+    +..+|++..| +++|+++++
T Consensus         1 ~~~~~~~~~df-----------------------------~~p~~i~eal~~~~~~----~~~~Y~~~~g-~~lr~~ia~   46 (361)
T d1d2fa_           1 LLPFTISDMDF-----------------------------ATAPCIIEALNQRLMH----GVFGYSRWKN-DEFLAAIAH   46 (361)
T ss_dssp             CEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTT----CCCCCCCSCC-HHHHHHHHH
T ss_pred             CcCcCCCCCCC-----------------------------CCCHHHHHHHHHHHhC----CCCCCCCCCC-HHHHHHHHH
Confidence            58999999998                             5689999999888865    3568999888 689999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCC-CCCcCCCHHHH
Q 018147          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEV  257 (360)
Q Consensus       179 ~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L  257 (360)
                      ++.+++|.++++++|++|+|+++++..++.+++ ++||+|++++|+|+.|...++..|.+++.++.+. +++|.+|++++
T Consensus        47 ~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~  125 (361)
T d1d2fa_          47 WFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL  125 (361)
T ss_dssp             HHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHH
T ss_pred             HHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-ccccccccccccccchhHHHHhhcceEEeecccccccccccccccc
Confidence            999999999999999999999999999999999 4999999999999999999999999999998764 34678999999


Q ss_pred             HHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       258 ~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      ++.+.+.     ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ...++....       
T Consensus       126 ~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~-------  192 (361)
T d1d2fa_         126 EAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNVA-------  192 (361)
T ss_dssp             HHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGTC-------
T ss_pred             hhhcccC-----CceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc-ccccccccc-------
Confidence            9988543     799999999999999999999999999999999999999999999999875 344443321       


Q ss_pred             CCceEEEEeccCcCcc-ccccccC
Q 018147          338 KDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      .+ ++|++.|+||.|+ +|+|+||
T Consensus       193 ~~-~~v~~~s~SK~~~~~g~R~g~  215 (361)
T d1d2fa_         193 RG-DWALLTSGSKSFNIPALTGAY  215 (361)
T ss_dssp             CS-SEEEEECSHHHHTCGGGCCEE
T ss_pred             cc-cccccccccccccccccccee
Confidence            23 5899999999986 7999998

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=1e-36  Score=294.64  Aligned_cols=223  Identities=18%  Similarity=0.333  Sum_probs=182.5

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~-~~~~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      +++|+|++|+|+.                            ..+|.+.+++ +.+.+..... ...+|++..|.++||++
T Consensus        29 ~~~i~l~~G~P~~----------------------------~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lR~a   79 (403)
T d1wsta1          29 SDVISLAGGLPAP----------------------------ETFPVETIKKIAVEVLEEHAD-KALQYGTTKGFTPLRLA   79 (403)
T ss_dssp             SSCEECCCCCCCG----------------------------GGSCHHHHHHHHHHHHHHSHH-HHHSCCCSSCCHHHHHH
T ss_pred             CCcEECCCCCCCc----------------------------cccCHHHHHHHHHHHHHhCcc-cccCCCCCcCCHHHHHH
Confidence            4799999999975                            1346666654 5555554322 35689999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       176 ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      +|+|+++++|.++++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...++.+|++++.++.+++   ..+..
T Consensus        80 ia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~---~~~~~  155 (403)
T d1wsta1          80 LARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-NPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDK---GMRVD  155 (403)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHH
T ss_pred             HHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh-hcCCccccCCCcchhhhHHHhhccccceeEeeccc---CCccc
Confidence            999999999999999999999999999999999999 49999999999999999999999999999999876   44444


Q ss_pred             HHHHHHHHHHhcC-CCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhC
Q 018147          256 EVKKQLEAAKAKG-ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (360)
Q Consensus       256 ~L~~~i~~~~~~g-~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~  334 (360)
                      .+.........+. ....++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. +..++.....   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~-~~~~~~~~~~---  231 (403)
T d1wsta1         156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE-PTPPIKHFDD---  231 (403)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGGCS---
T ss_pred             cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC-CCCcccccCC---
Confidence            4444443333222 2444666679999999999999999999999999999999999999999875 4555443211   


Q ss_pred             CCCCCceEEEEeccCcCccccccccC
Q 018147          335 YGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       335 ~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                         .+ ++++++||||.+++|+|+||
T Consensus       232 ---~~-~~i~~~S~SK~~~~G~RiG~  253 (403)
T d1wsta1         232 ---YG-RVIYLGTFSKILAPGFRIGW  253 (403)
T ss_dssp             ---SS-CEEEEEESTTTTCGGGCCEE
T ss_pred             ---CC-cEEEEccccceecCcccccc
Confidence               23 68999999999999999998

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-36  Score=288.96  Aligned_cols=216  Identities=22%  Similarity=0.338  Sum_probs=189.0

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|||++|+|++                             ..|+.+.+++.+.+.+    +.++|++..|.++||+++
T Consensus        26 ~~~i~l~~G~Pd~-----------------------------~~p~~i~~a~~~~~~~----~~~~Y~~~~G~~~LReai   72 (382)
T d1u08a_          26 HQAINLSQGFPDF-----------------------------DGPRYLQERLAHHVAQ----GANQYAPMTGVQALREAI   72 (382)
T ss_dssp             TTCEECCCSSCSS-----------------------------CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHH
T ss_pred             CCCEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCcCCHHHHHHH
Confidence            3899999999997                             4578888888888875    367899999999999999


Q ss_pred             HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       177 a~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      |+|+++++|+.++++ +|++|+|+++++.+++++++ ++||.|++++|+|+.|...+...|+.++.++++++ +|.+|++
T Consensus        73 a~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~  150 (382)
T d1u08a_          73 AQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQ  150 (382)
T ss_dssp             HHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHH
T ss_pred             HHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEecccccchhhhhhhccccceecccccc-cccCCHH
Confidence            999999999998887 59999999999999999999 59999999999999999999999999888887654 6789999


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~  335 (360)
                      ++++.+.+      ++++++++|||||||.+++.+++++|+++|++++++++.|++|..+.+.+.. ..+.... ...  
T Consensus       151 ~l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~-~~~~~~~-~~~--  220 (382)
T d1u08a_         151 EFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG-HASVLAH-PQL--  220 (382)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC-CCCGGGS-HHH--
T ss_pred             HHhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccc-ccccccc-ccc--
Confidence            99988776      8999999999999999999999999999999999999999999998887642 3333222 111  


Q ss_pred             CCCCceEEEEeccCcCcc-ccccccC
Q 018147          336 GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       336 ~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                        .+ ++|++.|+||.++ +|+|+||
T Consensus       221 --~~-~~i~~~s~SK~~~~pG~RiG~  243 (382)
T d1u08a_         221 --RE-RAVAVSSFGKTYHMTGWKVGY  243 (382)
T ss_dssp             --HT-TEEEEEEHHHHTTCGGGCCEE
T ss_pred             --cC-cEEEEeeccccccCCcccchh
Confidence              12 6899999999885 8999999

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=1.7e-36  Score=293.28  Aligned_cols=248  Identities=13%  Similarity=0.096  Sum_probs=194.4

Q ss_pred             cccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHH
Q 018147           68 CEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER  147 (360)
Q Consensus        68 ~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~  147 (360)
                      ++.+...+|...+++++++        |.+++|||++|.+.....+|                        ..++.|.++
T Consensus         7 ~~~~p~d~i~~~~~~~~~d--------~~~~~InL~iG~~~d~~~~~------------------------~~~~~V~~a   54 (401)
T d7aata_           7 VEMGPPDPILGVTEAFKRD--------TNSKKMNLGVGAYRDDNGKP------------------------YVLNCVRKA   54 (401)
T ss_dssp             CCCCCCCHHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCC------------------------CCCHHHHHH
T ss_pred             CCCCCCChHHHHHHHHhCC--------CCCCcEEccCCCCcCCCCCC------------------------CCCHHHHHH
Confidence            4444455677777777765        33678999999654322222                        124556666


Q ss_pred             HHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-----HHHHHHHHHHHccCCCCEEEEcC
Q 018147          148 AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-----SPAVHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       148 ~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga-----~~al~~~~~~l~~~~gd~Vlv~~  222 (360)
                      ..+.+.+.   ..++|++..|+++||+++++++.++++..+.+++|+++.|+     .+++..+++.++ +|||+|++++
T Consensus        55 ~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~-~pGd~Vlv~~  130 (401)
T d7aata_          55 EAMIAAKK---MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-KFSRDVYLPK  130 (401)
T ss_dssp             HHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEEEEEE
T ss_pred             HHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc-CCCceEEEec
Confidence            55555543   25589999999999999999999998888888888776543     357778888888 5999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.|...++.+|++++.+++.++++|.++++.+.+.+...   ..+++++++++||||||.+++.+++++|+++|++|
T Consensus       131 P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~  207 (401)
T d7aata_         131 PSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR  207 (401)
T ss_dssp             SCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             CCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc
Confidence            999999999999999999999988888999999988877532   23688999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHH-HHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFK-KVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++||+||+|.++.|++.. ..+.. .......    + +++++.|+||.++ +|+|+||
T Consensus       208 ~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~~~----~-~~~~~~s~sk~~~~~G~RiG~  261 (401)
T d7aata_         208 NLLAYFDMAYQGFASGDIN-RDAWALRHFIEQG----I-DVVLSQSYAKNMGLYGERAGA  261 (401)
T ss_dssp             TCEEEEEESCTTTTTSCHH-HHTHHHHHHHHTT----C-CCEEEEECTTTSCCGGGCEEE
T ss_pred             eEEEEEeccchhhhcCCcc-cchhhhhhhhhhh----c-ccceeEeccccceeeccccce
Confidence            9999999999999998742 22221 1112211    2 5789999999876 7999998

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=4.7e-36  Score=292.76  Aligned_cols=198  Identities=24%  Similarity=0.430  Sum_probs=176.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH-cC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HG  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~-~g  236 (360)
                      ...|++..|.++||++||+|+.+++|.  .+++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+.. .|
T Consensus        76 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~g  154 (428)
T d1iaya_          76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG  154 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred             hccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHHHhcC
Confidence            346999999999999999999999885  4678999999999999999999999 5999999999999999887775 48


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      +++++++++.+++|.+|++.++.+++...+.++++++++++|||||||.+++.+++++|+++|++||++||+||+|.+++
T Consensus       155 ~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~  234 (428)
T d1iaya_         155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence            99999999988899999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHhhCC--CCCCceEEEEeccCcCcc-ccccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGY--GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~--~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++. ++.++.++......  ...+ ++++++||||.|+ +|+|+||
T Consensus       235 ~~~~-~~~s~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~GlRiG~  279 (428)
T d1iaya_         235 FDTP-QFVSIAEILDEQEMTYCNKD-LVHIVYSLSKDMGLPGFRVGI  279 (428)
T ss_dssp             CSSS-CCCCHHHHHTSGGGTTSCTT-SEEEEEESTTTSSCGGGCEEE
T ss_pred             cCcc-cccccccccchhhccccccc-eEEEEecCCCcccCCCccccc
Confidence            9875 58888776543211  1133 6899999999985 7999998

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=6e-36  Score=292.30  Aligned_cols=198  Identities=21%  Similarity=0.392  Sum_probs=177.1

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH-cC
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HG  236 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~-~g  236 (360)
                      ...|++..|.++||+++|+|+++++|.  ++++++|++|+|+++++..++.+++ +|||+|+++.|+|+.+...++. .|
T Consensus        77 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~~~~g  155 (431)
T d1m7ya_          77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTG  155 (431)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTC
T ss_pred             hcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHhcC
Confidence            346999999999999999999999874  5778999999999999999999999 5999999999999999888875 58


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      +++++++++++++|.+|++.+++++.+..+++.++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+++
T Consensus       156 ~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~  235 (431)
T d1m7ya_         156 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA  235 (431)
T ss_dssp             CEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred             ceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccc
Confidence            99999999998899999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHhhCC----CCCCceEEEEeccCcCcc-ccccccC
Q 018147          317 YVPEKKFHSFKKVSRSMGY----GEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       317 ~~~~~~~~s~~~~~~~~~~----~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |++. .+.++.++.+....    ...+ ++|+++||||.|+ +|+|+||
T Consensus       236 ~~~~-~~~s~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~RiG~  282 (431)
T d1m7ya_         236 FSSP-SFISVMEVLKDRNCDENSEVWQ-RVHVVYSLSKDLGLPGFRVGA  282 (431)
T ss_dssp             CSSS-CCCCHHHHTTTTTCSSSSSGGG-GEEEEEESSSSSCCGGGCEEE
T ss_pred             cCCC-CCCCHHHHhhhcccccccccCc-eEEEEecCcccccCCCCccce
Confidence            9885 58888776543211    0112 6899999999998 8999998

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-36  Score=294.23  Aligned_cols=250  Identities=16%  Similarity=0.071  Sum_probs=194.7

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~  146 (360)
                      ++++....+|...+++++++        |.+++|||++|.+.....+|                        ..++.+.+
T Consensus         4 ~~~~~~~dpi~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~------------------------p~~~~V~~   51 (397)
T d3tata_           4 KVDAYAGDPILTLMERFKED--------PRSDKVNLSIGLYYNEDGII------------------------PQLQAVAE   51 (397)
T ss_dssp             CCCCCCCCTTTTHHHHHHHS--------CCSSCEECSCCSCCCTTSSC------------------------CCCHHHHH
T ss_pred             cCCCCCCCcHHHHHHHHhcC--------CCCCcEEccCCCCcCCCCCC------------------------CCcHHHHH
Confidence            45556566777777777765        44578999999643311111                        12445555


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH----HHHHHHHHccCCCCEEEEcC
Q 018147          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA----VHMMMQLLIRSENDGILCPI  222 (360)
Q Consensus       147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a----l~~~~~~l~~~~gd~Vlv~~  222 (360)
                      + .+.+...+. ..+.|++..|+++||+++|+++.++++..+++++|+++.|++++    +.+++..++ +|||+|++++
T Consensus        52 A-~~~l~~~~~-~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~pgd~Vlv~~  128 (397)
T d3tata_          52 A-EARLNAQPH-GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSD  128 (397)
T ss_dssp             H-HHHHTTSCC-SSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHH-CSSCCCEECS
T ss_pred             H-HHHHHhCcc-cCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhc-CCCCcceecc
Confidence            4 444444332 47789999999999999999999999988889999988877664    555566666 5999999999


Q ss_pred             CCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHc
Q 018147          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (360)
Q Consensus       223 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~  302 (360)
                      |+|+.|...++.+|++++.+|++.+++|..|.+.+.+.+...   ..+++++++++||||||.+++.+++++|+++|+++
T Consensus       129 P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~  205 (397)
T d3tata_         129 PTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR  205 (397)
T ss_dssp             SCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT
T ss_pred             cCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc
Confidence            999999999999999999999999888899998888776532   23677888999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       303 ~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +++||+||+|.++.|+++. ..+........    .+ ++|++.|+||.|+ +|+|+||
T Consensus       206 ~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~----~~-~~i~~~s~SK~~~~~G~RiG~  258 (397)
T d3tata_         206 ELIPFLDIAYQGFGAGMEE-DAYAIRAIASA----GL-PALVSNSFSKIFSLYGERVGG  258 (397)
T ss_dssp             TCCCEECBSCTTSSSCHHH-HHHHHHHHHTT----TC-CCEECBCCHHHHTBTTTCCBC
T ss_pred             CeeEEeehhhhhhccCCcc-cchhhhhhhhc----CC-ceEEEecCcccccccCccccc
Confidence            9999999999999998642 22222222222    22 6899999999875 5999999

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.7e-36  Score=289.50  Aligned_cols=223  Identities=20%  Similarity=0.274  Sum_probs=184.8

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCcCcHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIPGRATGAYSHSQGIKGLRDT  175 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~-~~~~l~~~~~~~~~~Y~~~~G~~~lr~~  175 (360)
                      +++|+|++|+|+.                            ..+|.+.+.+ +.+.+++... ...+|++..|.++||++
T Consensus        38 ~~~I~l~~G~Pd~----------------------------~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~a   88 (420)
T d1vp4a_          38 KDAISFGGGVPDP----------------------------ETFPRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQ   88 (420)
T ss_dssp             TTCEECCCCSCCG----------------------------GGSCHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHH
T ss_pred             CCcEecCCcCCCC----------------------------ccCCHHHHHHHHHHHHhhCCc-cccCCCCCcCCHHHHHH
Confidence            4788888888874                            1356655554 4555554322 35689999999999999


Q ss_pred             HHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCH
Q 018147          176 IAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (360)
Q Consensus       176 ia~~l~~~~g~~-~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  254 (360)
                      ||+|+++++|+. +++++|++|+|+++++.+++.+++ ++||.|++++|+|+.|...++..|++++.++++++   ++++
T Consensus        89 ia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~~~~  164 (420)
T d1vp4a_          89 ILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDL  164 (420)
T ss_dssp             HHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECH
T ss_pred             HHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh-ccccccccccccccchhHHHHHHhhhccccccccc---cccc
Confidence            999999999986 799999999999999999999999 59999999999999999999999999999999876   7899


Q ss_pred             HHHHHHHHHHHhcC--CCcc-EEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHH
Q 018147          255 SEVKKQLEAAKAKG--ITVR-ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR  331 (360)
Q Consensus       255 ~~L~~~i~~~~~~g--~~~k-~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~  331 (360)
                      +.++..+.+.....  .+++ ++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++. ...+......
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~~~  243 (420)
T d1vp4a_         165 NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIGG  243 (420)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHHHC
T ss_pred             chhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc-cccccccccc
Confidence            99888776543332  2334 445669999999999999999999999999999999999999999875 3445443321


Q ss_pred             hhCCCCCCceEEEEeccCcCccccccccC
Q 018147          332 SMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       332 ~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                            ++ ++++++|+||.+.+|+|+||
T Consensus       244 ------~~-~~i~~~s~sk~~~~G~RiG~  265 (420)
T d1vp4a_         244 ------PE-RVVLLNTFSKVLAPGLRIGM  265 (420)
T ss_dssp             ------TT-TEEEEEESTTTTCGGGCEEE
T ss_pred             ------cc-ceeEEecccccccccccccc
Confidence                  34 68999999999999999998

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.4e-35  Score=279.74  Aligned_cols=229  Identities=24%  Similarity=0.395  Sum_probs=192.1

Q ss_pred             cChhhhccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCC
Q 018147           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (360)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~  140 (360)
                      +++++.+++.+++.++...|++              ..+|||++|+|++                             .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~la~~--------------~~~I~ls~g~p~~-----------------------------~~   39 (368)
T d1v2da_           3 LHPRTEAAKESIFPRMSGLAQR--------------LGAVNLGQGFPSN-----------------------------PP   39 (368)
T ss_dssp             CCGGGGGC---CHHHHHHHHHH--------------HTCEECCCCSCSS-----------------------------CC
T ss_pred             CChhhhhcCCCHHHHHHHHhcc--------------CCCEEecCCCCCC-----------------------------CC
Confidence            5688888999887776655443              2689999999987                             45


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE
Q 018147          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (360)
Q Consensus       141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv  220 (360)
                      |+.+++++.+.+.+     ..+|++..|.++||++||+++      .+++++|++|+|+++++..++..++. +||.|++
T Consensus        40 p~~i~~al~~~l~~-----~~~Y~~~~G~~elr~aiA~~~------~~~~~~Iiit~G~~~al~~~~~~l~~-~~d~v~~  107 (368)
T d1v2da_          40 PPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVLLQSLVG-PGDEVVV  107 (368)
T ss_dssp             CHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHHHHHHCC-TTCEEEE
T ss_pred             CHHHHHHHHHHhhc-----ccCCCCCcCCHHHHHHHHhhc------ccCCcceeeccchHHHHHHHhhcccc-ccccccc
Confidence            88899988887654     468999999999999999998      57899999999999999999999995 9999999


Q ss_pred             cCCCchHHHHHHHHcCCeEEEeecCC-CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          221 PIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       221 ~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      +.|+|+.+...++..|.+++.++++. .++|.+|++.+++++++      ++++++++|||||||.+++.+++++|+++|
T Consensus       108 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a  181 (368)
T d1v2da_         108 LEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLA  181 (368)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             cCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHH
Confidence            99999999999999999999988753 34688999999998876      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++||+++|+||+|..+.+...  ........       .+ +.+++.|+||.++ +|+|+||
T Consensus       182 ~~~~i~ii~D~~~~~~~~~~~--~~~~~~~~-------~~-~~~~~~~~sk~~~~~G~R~g~  233 (368)
T d1v2da_         182 RAHDLFLISDEVYDELYYGER--PRRLREFA-------PE-RTFTVGSAGKRLEATGYRVGW  233 (368)
T ss_dssp             HHTTCEEEEECTTTTCBSSSC--CCCHHHHC-------TT-TEEEEEEHHHHTTCGGGCCEE
T ss_pred             HHcCCeeeechhhhhhccccc--cccccccc-------cc-ccceeeccccccccccccccc
Confidence            999999999999998776654  33322221       22 4688999998664 5999998

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=278.77  Aligned_cols=249  Identities=14%  Similarity=0.062  Sum_probs=183.8

Q ss_pred             chhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHH
Q 018147           71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ  150 (360)
Q Consensus        71 ~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~  150 (360)
                      ....+|...+++++++        |.+++|||++|.+.....+|.                        .++.|.+ +.+
T Consensus        11 ~~~d~i~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~~------------------------~~~~V~~-A~~   57 (412)
T d1yaaa_          11 LPPDALFGIKQRYGQD--------QRATKVDLGIGAYRDDNGKPW------------------------VLPSVKA-AEK   57 (412)
T ss_dssp             CCCCTTHHHHHHHHTC--------CCSSCEECSSCCCBCTTSCBC------------------------CCHHHHH-HHH
T ss_pred             CCCChHHHHHHHHhcC--------CCCCcEEeecCCCcCCCCCCC------------------------CcHHHHH-HHH
Confidence            3333567777777665        335789999994322112221                        2344544 444


Q ss_pred             HHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHH--HHccCCCCEEEEcCCCch
Q 018147          151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQ--LLIRSENDGILCPIPQYP  226 (360)
Q Consensus       151 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~--t~Ga~~al~~~~~--~l~~~~gd~Vlv~~P~y~  226 (360)
                      .+..... ..++|++..|.++||+++++++.++++..+.++.++.  +.|+..++..++.  .++ ++||+|++++|+|+
T Consensus        58 ~l~~~~~-~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~Vlip~P~~~  135 (412)
T d1yaaa_          58 LIHNDSS-YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWA  135 (412)
T ss_dssp             HHHTCTT-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCT
T ss_pred             HHHhCcc-cCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-CCCCEEecccccCc
Confidence            4544332 4678999999999999999999888776555555544  3455555544443  344 59999999999999


Q ss_pred             HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEE
Q 018147          227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL  306 (360)
Q Consensus       227 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~l  306 (360)
                      .|...++..|++++.+++..++++.++.+.+++.+...   .++++++++++||||||.+++++++++|+++|++++++|
T Consensus       136 ~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~i  212 (412)
T d1yaaa_         136 NHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIA  212 (412)
T ss_dssp             THHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             hhHHHHHHcCCceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEE
Confidence            99999999999999999988888899999998887652   225668888899999999999999999999999999999


Q ss_pred             EEccCCCCCccCCCCCCCCHHHH-HHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          307 LADEVYQENVYVPEKKFHSFKKV-SRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       307 I~DeaY~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+||+|.++.|++. ...+.... ....... .+ ++|++.|+||.|+ +|+|+||
T Consensus       213 i~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~-~~-~~i~~~s~SK~~~~~G~RiG~  265 (412)
T d1yaaa_         213 LFDTAYQGFATGDL-DKDAYAVRLGVEKLST-VS-PVFVCQSFAKNAGMYGERVGC  265 (412)
T ss_dssp             EEEESCTTTSSSCH-HHHTHHHHHHHHHTTT-TC-CEEEEEECTTTSCCGGGCEEE
T ss_pred             eecceeeecccCCc-ccchhhhhhhhhcccc-CC-CeEEEEecCCccccCcCceEE
Confidence            99999999999874 22232211 1111111 22 6899999999987 7999998

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=3.1e-34  Score=278.32  Aligned_cols=243  Identities=15%  Similarity=0.078  Sum_probs=179.2

Q ss_pred             chHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHH
Q 018147           74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILD  153 (360)
Q Consensus        74 ~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~  153 (360)
                      ..|...+++++++        |.+++|||+||.......+|                        ..++.|.++......
T Consensus        15 ~~i~~l~~~~~~d--------~~~~~Inl~iG~~~d~~g~~------------------------~~~~~V~~a~~~~~~   62 (412)
T d1ajsa_          15 VLVFKLIADFRED--------PDPRKVNLGVGAYRTDDCQP------------------------WVLPVVRKVEQRIAN   62 (412)
T ss_dssp             CHHHHHHHHHHTC--------CCTTCEECCSCCCCCTTSCC------------------------CCCHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHhcC--------CCCCcEEeeCCCCcCCCCCC------------------------CCcHHHHHHHHHHHh
Confidence            3567777777654        33578999999432211112                        124555554443333


Q ss_pred             cCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHHHH-------ccCCCCEEEEcCCC
Q 018147          154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQLL-------IRSENDGILCPIPQ  224 (360)
Q Consensus       154 ~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~--~t~Ga~~al~~~~~~l-------~~~~gd~Vlv~~P~  224 (360)
                      +..  ..++|++..|+++||+++++++.++++..+.+++++  .|.|++.++..+...+       + +|||+|++++|+
T Consensus        63 ~~~--~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~pGd~Vlv~~P~  139 (412)
T d1ajsa_          63 NSS--LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTN-NKDTPVYVSSPT  139 (412)
T ss_dssp             CTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSS-CCCSCEEEEESC
T ss_pred             CCC--cCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcC-CCCCEEEEeCCc
Confidence            332  367899999999999999999999888777777654  4566666665555443       4 599999999999


Q ss_pred             chHHHHHHHHcCCeEEEee-cCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcC
Q 018147          225 YPLYSASIALHGGTLVPYY-LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       225 y~~~~~~~~~~g~~~~~v~-~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~  303 (360)
                      |+.|...++.+|++.+.++ ..+++.+..|++.+++.+...   .++++++++++||||||.+++++++++|+++|++||
T Consensus       140 y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~  216 (412)
T d1ajsa_         140 WENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF  216 (412)
T ss_dssp             CTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCC
Confidence            9999999999999876554 455566788999888776542   236788888999999999999999999999999999


Q ss_pred             CEEEEccCCCCCccCCCCCCCCHHHH-HHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          304 LVLLADEVYQENVYVPEKKFHSFKKV-SRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       304 i~lI~DeaY~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ++||+||+|.++.|++.. ..++... ....    .+ +++++.|+||.++ +|+|+||
T Consensus       217 ~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~~----~~-~~~~~~s~sk~~~~~G~R~G~  269 (412)
T d1ajsa_         217 LFPFFDSAYQGFASGNLE-KDAWAIRYFVSE----GF-ELFCAQSFSKNFGLYNERVGN  269 (412)
T ss_dssp             CEEEEEESCTTTTTSCHH-HHTHHHHHHHHT----TC-CEEEEEECTTTSCCGGGCEEE
T ss_pred             EEEEecHhhhhhhcCCcc-cchhhhhhhhhh----cc-cccccccccccccCCCCCccc
Confidence            999999999999998742 2222111 1221    22 5789999999875 5999998

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-34  Score=274.82  Aligned_cols=241  Identities=15%  Similarity=0.096  Sum_probs=177.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHc
Q 018147           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (360)
Q Consensus        75 ~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~  154 (360)
                      +|...+++++++        +.+++|||++|.+.....+|                        ..++.|.++..+.+++
T Consensus        12 ~i~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~------------------------p~~~~V~~A~~~~~~~   59 (396)
T d2q7wa1          12 PILGLADLFRAD--------ERPGKINLGIGVYKDETGKT------------------------PVLTSVKKAEQYLLEN   59 (396)
T ss_dssp             ------------------------CEESSCCSCCCTTSCC------------------------CCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcc--------CCCCcEEeeCCCccCCCCCC------------------------CCCHHHHHHHHHHhhC
Confidence            445555555544        22478999999543322222                        2356777777776665


Q ss_pred             CCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHH--ccCCCCEEEEcCCCchHHHH
Q 018147          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLL--IRSENDGILCPIPQYPLYSA  230 (360)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I--~~t~Ga~~al~~~~~~l--~~~~gd~Vlv~~P~y~~~~~  230 (360)
                      .   ..++|++..|+++||+++++++.++++..+.++.+  ++|.|+..++.+++..+  + ++||.|++++|+|+.|..
T Consensus        60 ~---~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~gd~Vlvp~P~y~~y~~  135 (396)
T d2q7wa1          60 E---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNPSWPNHKS  135 (396)
T ss_dssp             C---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEESCCTHHHH
T ss_pred             C---CCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhc-ccceEEEEecCCCccchH
Confidence            3   25689999999999999999999988876666654  45777777766655443  4 599999999999999999


Q ss_pred             HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       231 ~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      .++.+|++++.+++..++++..+.+.+.+....   ...+++++++++||||||.+++.+++++|+++|++|+++||+||
T Consensus       136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De  212 (396)
T d2q7wa1         136 VFNSAGLEVREYAYYDAENHTLDFDALINSLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF  212 (396)
T ss_dssp             HHHHTTCEEEEEECEETTTTEECHHHHHHHHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHcCCeeEecccccccccccccchHHHHHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEec
Confidence            999999999999998887788888887776543   22367788889999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       311 aY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      +|+++.|++. ...+......+..    + +++++.|+||.|+ +|+|+||
T Consensus       213 ~Y~~l~~~~~-~~~~~~~~~~~~~----~-~~~~~~s~sk~~~~~G~R~G~  257 (396)
T d2q7wa1         213 AYQGFARGLE-EDAEGLRAFAAMH----K-ELIVASSYSKNFGLYNERVGA  257 (396)
T ss_dssp             SCTTSSSCHH-HHTHHHHHHHHHC----S-CEEEEEECTTTTTCGGGCCEE
T ss_pred             cccccccCCc-cCchHhhhhhhhc----c-cccccccccccccccCCCccc
Confidence            9999999864 2333333333332    2 5788999999875 6999998

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=7.3e-34  Score=273.81  Aligned_cols=249  Identities=14%  Similarity=0.100  Sum_probs=188.0

Q ss_pred             ccccchhchHHHHHHHHHHHHhcCCCCCCcccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHH
Q 018147           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (360)
Q Consensus        67 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~p~~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~  146 (360)
                      .++.+...+|...+++++++        |.+++|||+||.+.....+|.                        .++.|.+
T Consensus         4 ~~~~~~~d~i~~l~~~~~~d--------~~~~~InL~iG~~~d~~g~~~------------------------~~~~V~~   51 (394)
T d2ay1a_           4 NLKPQAPDKILALMGEFRAD--------PRQGKIDLGVGVYKDATGHTP------------------------IMRAVHA   51 (394)
T ss_dssp             GCCCCCCCSHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCCC------------------------CCHHHHH
T ss_pred             CCCCCCCChHHHHHHHHhCC--------CCCCCEEccCCCccCCCCCCC------------------------CCHHHHH
Confidence            34555555778888888765        335789999997544323332                        3566777


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHHccCCCCEEEEcCCCc
Q 018147          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSENDGILCPIPQY  225 (360)
Q Consensus       147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~G-a~~al~~~~~~l~~~~gd~Vlv~~P~y  225 (360)
                      ++.+.+++..   .++|++..|+++||+++++++.++++....++.+++++| +..++...+..+. ++||.|++++|+|
T Consensus        52 A~~~~~~~~~---~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gd~V~~p~p~~  127 (394)
T d2ay1a_          52 AEQRMLETET---TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA-NPDLRVFVSDPTW  127 (394)
T ss_dssp             HHHHHHHHCC---CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCC
T ss_pred             HHHHHhhCCC---CCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc-CCceEEEEecccc
Confidence            7777666532   568999999999999999999887765444444444443 2444556666666 5999999999999


Q ss_pred             hHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCE
Q 018147          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (360)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~  305 (360)
                      +.|...++.+|++++.+++..++.+..+.+.+++.....   ..+++++++++||||||.+++.+++++|+++|++++++
T Consensus       128 ~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~  204 (394)
T d2ay1a_         128 PNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGAL  204 (394)
T ss_dssp             HHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             cchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEE
Confidence            999999999999999999987777788888887766542   22466777779999999999999999999999999999


Q ss_pred             EEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       306 lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ||+||+|.++.|++. ...++........    . +++++.|+||.++ +|+|+||
T Consensus       205 ii~De~Y~~l~~~~~-~~~~~~~~~~~~~----~-~~~~~~s~sk~~~~~G~R~G~  254 (394)
T d2ay1a_         205 PLIDLAYQGFGDGLE-EDAAGTRLIASRI----P-EVLIAASCSKNFGIYRERTGC  254 (394)
T ss_dssp             EEEEECCTTSSSCHH-HHHHHHHHHHHHC----S-SEEEEEECTTTTTCGGGCEEE
T ss_pred             EEEeccchhhccccc-ccchhhhhhhhhc----c-cccccccccccccCCcccccc
Confidence            999999999999864 2333333222221    2 5789999999876 6999998

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.97  E-value=5e-31  Score=250.36  Aligned_cols=190  Identities=19%  Similarity=0.268  Sum_probs=156.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEE
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~V  218 (360)
                      ++|+.+++++.+.+.+     ...|++. |..+||+++|+++      ++++++|++|+|+++++..++..+   .++.+
T Consensus        35 ~~p~~~~~a~~~~~~~-----~~~Yp~~-~~~~Lr~aia~~~------~v~~~~I~~~~g~~~~~~~~~~~~---~~~~~   99 (355)
T d1lc5a_          35 GMPVSVKRALIDNLDC-----IERYPDA-DYFHLHQALARHH------QVPASWILAGNGETESIFTVASGL---KPRRA   99 (355)
T ss_dssp             CCCHHHHHHHHHTGGG-----GGSCCCT-TCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHHHHHH---CCSEE
T ss_pred             CCCHHHHHHHHHHHHH-----hccCCCC-ChHHHHHHHHHHh------CCCHHHEEecccHHHHHHHHHhhh---ccccc
Confidence            5688888888776544     5568554 5789999999998      578999999999999999887765   45677


Q ss_pred             EEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHH
Q 018147          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       219 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~l  298 (360)
                      ++..|.|+.|.......++.++.++++.+++|.++ +++++++.+      ++++|+++|||||||.+++.+++++|+++
T Consensus       100 ~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~  172 (355)
T d1lc5a_         100 MIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADR  172 (355)
T ss_dssp             EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             cccCCccceeccccccccccceeeeeeccCCccce-eeeeecccc------ccceeeeecccCcccccchhhhhhhhhhh
Confidence            78889999999999999999999999888778777 445555544      79999999999999999999999999999


Q ss_pred             HHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       299 a~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      |+++++++|+||+|.++.+.+.. ...+.   .     ..+ ++|+++||||.|+ +|+|+||
T Consensus       173 a~~~~~~li~De~y~~~~~~~~~-~~~~~---~-----~~~-~~i~~~S~SK~~~l~GlR~G~  225 (355)
T d1lc5a_         173 CKSLNINLILDEAFIDFIPHETG-FIPAL---K-----DNP-HIWVLRSLTKFYAIPGLRLGY  225 (355)
T ss_dssp             HHHHTCEEEEECTTGGGSTTCCC-SGGGC---T-----TCT-TEEEEEESTTTTTCTTTCCEE
T ss_pred             ccccccccccccceeeeeeeccc-ccccc---c-----ccc-cceeecccccccccccccccc
Confidence            99999999999999998776542 11111   1     122 5899999999998 9999998

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7e-30  Score=242.48  Aligned_cols=172  Identities=20%  Similarity=0.351  Sum_probs=145.4

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC-EEEEcCCCchHHHHHHHHcCCe
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-GILCPIPQYPLYSASIALHGGT  238 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd-~Vlv~~P~y~~~~~~~~~~g~~  238 (360)
                      ...|++.. ..+||+++|+++      ++++++|++|+|++++|..++++++. ||| .|+++.|+|+.|...++..|.+
T Consensus        50 l~rYPd~~-~~~Lr~~ia~~~------gv~pe~I~it~Gs~eai~~~~~~~~~-pgd~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          50 LNRYPECQ-PKAVIENYAQYA------GVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             TTSCCCSS-CHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHCC-TTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             HhcCCCCc-HHHHHHHHHHHh------CCChHHeeeccCchHHHHHHHHHhhc-cccccccccccccccchhhhhccCce
Confidence            56797664 689999999998      57899999999999999999999994 998 5889999999999999999999


Q ss_pred             EEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 018147          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       239 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~  318 (360)
                      ++.+++++  +|.+|+++++.++.       ++++|++++||||||.+++.++++.+.+.++ ++.++|+||+|.+|.++
T Consensus       122 v~~~~~~~--~~~~d~~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~  191 (354)
T d1fg7a_         122 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ  191 (354)
T ss_dssp             EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred             eecccccc--ccccchhhhhhccc-------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccc
Confidence            99988764  58999999987653       6899999999999999999999999888776 57888999999987655


Q ss_pred             CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       319 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..  ....       ...++  ++|+++||||.|+ +|+|+||
T Consensus       192 ~~--~~~~-------~~~~~--~~iv~~S~SK~~~laGlRiGy  223 (354)
T d1fg7a_         192 AS--LAGW-------LAEYP--HLAILRTLSKAFALAGLRCGF  223 (354)
T ss_dssp             GC--SGGG-------TTTCT--TEEEEEESSSTTCCGGGCCEE
T ss_pred             cc--cchh-------hcccc--cceEEeCCccccCCCcccccc
Confidence            43  1111       11123  4789999999998 8999998

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.2e-29  Score=236.27  Aligned_cols=194  Identities=18%  Similarity=0.181  Sum_probs=152.9

Q ss_pred             ccceeccCCCCcCCCCCChhHHHHHHhhcCCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHH
Q 018147           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (360)
Q Consensus        97 ~~vi~l~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i  176 (360)
                      .++|+|++|++.+                             ++|+.+++++.+.+...    ...|.+..|.++||+++
T Consensus        19 ~d~~~l~~~enp~-----------------------------~~p~~i~~~~~~~~~~~----~~~~yp~~g~~~Lr~ai   65 (334)
T d2f8ja1          19 RDKTYLALNENPF-----------------------------PFPEDLVDEVFRRLNSD----ALRIYYDSPDEELIEKI   65 (334)
T ss_dssp             CCSEECSSCCCSS-----------------------------CCCHHHHHHHHHHCCTT----GGGSCCCSSCHHHHHHH
T ss_pred             CCceEEECCCCCC-----------------------------CCCHHHHHHHHHHhhcc----hhcCCCCCCcHHHHHHH
Confidence            5899999996555                             56889999888777552    44455778999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHH
Q 018147          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (360)
Q Consensus       177 a~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  256 (360)
                      |+|+.++   .+++++|++|+|++++|.++++     +||+|++++|+|+.|...++.+|++++.+|++++..+  + + 
T Consensus        66 a~~~~~~---~v~~d~I~it~G~~~~l~~l~~-----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~--~-~-  133 (334)
T d2f8ja1          66 LSYLDTD---FLSKNNVSVGNGADEIIYVMML-----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--P-E-  133 (334)
T ss_dssp             HHHHTCS---SCCGGGEEEEEHHHHHHHHHHH-----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCC--C-C-
T ss_pred             HHHhccc---CCCcceEEecCcchhHHHHHhh-----hccccccccccccccccchhccCCccccccccccccc--c-c-
Confidence            9999654   3789999999999999877543     5799999999999999999999999999999876432  1 1 


Q ss_pred             HHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       257 L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                         +.      ..++++++++|||||||.+++.+++.++    .++++++|+||+|.++.+...  ....    .     
T Consensus       134 ---~~------~~~~~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~--~~~~----~-----  189 (334)
T d2f8ja1         134 ---VN------VGEGDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY--VDFL----K-----  189 (334)
T ss_dssp             ---CC------CCTTEEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC--GGGG----G-----
T ss_pred             ---cc------cccceEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhccccc--cccc----c-----
Confidence               11      1268899999999999999997776553    468999999999988654432  1111    1     


Q ss_pred             CCCceEEEEeccCcCcc-ccccccC
Q 018147          337 EKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                      ..+ ++|+++||||.|+ +|+|+||
T Consensus       190 ~~~-~~i~~~S~SK~~~~~G~R~G~  213 (334)
T d2f8ja1         190 KYE-NLAVIRTFSKAFSLAAQRVGY  213 (334)
T ss_dssp             TCS-SEEEEEESTTTSSCTTTCEEE
T ss_pred             cCc-eEEEEecCccccchhhhhhhh
Confidence            123 6899999999987 7999998

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.90  E-value=4.4e-25  Score=213.96  Aligned_cols=152  Identities=18%  Similarity=0.193  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-------CCCCEEEEcCCCchHHHHHHHHcCCeEEEe
Q 018147          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGTLVPY  242 (360)
Q Consensus       170 ~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v  242 (360)
                      ++|+++|+++.....+...+..+|++++|++++|+.++.+|..       +|||+|+++.|+|+.|...++..+.+... 
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~-  181 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV-  181 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE-
T ss_pred             HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc-
Confidence            8999999998876655545556799999999999999999931       48999999999999999999998876554 


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                             |.+|.+.+++++++      ++++++|+|||||||.+..          +..+++.+|.||+|.+..|.+   
T Consensus       182 -------~~~D~~~~~~~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~---  235 (425)
T d2hoxa1         182 -------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP---  235 (425)
T ss_dssp             -------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC---
T ss_pred             -------cCCCHHHHHhhCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccc---
Confidence                   45566666666655      7999999999999998742          233689999999997644432   


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCcc-ccccccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRY-FHFFSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~-g~~RvGw  360 (360)
                         +.    ..   ++  ++|+++||||.|+ +|+|+||
T Consensus       236 ---~~----~~---~~--~~Ivl~S~SK~fglaGlRiGw  262 (425)
T d2hoxa1         236 ---IK----YK---AD--EDILLFTMSKFTGHSGSRFGW  262 (425)
T ss_dssp             ---CC----SC---BC--CSEEEEEHHHHTSCGGGCCEE
T ss_pred             ---hh----hh---cC--CeEEEEeCHHhccCcchheee
Confidence               11    11   12  5799999999998 7999999

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=4.6e-22  Score=187.53  Aligned_cols=164  Identities=15%  Similarity=0.125  Sum_probs=134.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCC
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  248 (360)
                      ...+++.+|+++    |    .+++++|+|+++|+..++.++++ +||.|+++.++|......++..|++++.+|+++..
T Consensus        49 ~~~~~~~~A~~~----g----~e~~~~t~g~t~a~~~~~~al~~-~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~  119 (364)
T d2e7ja1          49 HDFIHNQLPKFL----G----CDVARVTNGAREAKFAVMHSLAK-KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP  119 (364)
T ss_dssp             HHHHHTHHHHHT----T----SSEEEEESSHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT
T ss_pred             HHHHHHHHHHHh----C----cCEEEEECcHHHHHHHHHHHHhC-CCcEEEeecccccccchHHHhccceEEEeeecccc
Confidence            345677777765    3    47899999999999999999994 99999999999998888899999999999998877


Q ss_pred             CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHH
Q 018147          249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (360)
Q Consensus       249 ~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~  328 (360)
                      +|.+|++++++++++..++ .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|....+.     ....+
T Consensus       120 ~~~i~~~~l~~~i~~~~k~-~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~-----~~~~~  190 (364)
T d2e7ja1         120 DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-----VSLKE  190 (364)
T ss_dssp             TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC-----CCHHH
T ss_pred             ccccCHHHHHhhhhhhccc-CCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh-----hcccc
Confidence            8899999999999875332 25678899999999999998   889999999999999999999753322     12222


Q ss_pred             HHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          329 VSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                          ++   .|   +++.|++|.|++.-++||
T Consensus       191 ----~g---~D---~~~~S~~K~~~~~g~~g~  212 (364)
T d2e7ja1         191 ----IG---AD---FIVGSGHKSMAASGPIGV  212 (364)
T ss_dssp             ----HT---CS---EEEEEHHHHSSCCSSCEE
T ss_pred             ----cc---cc---eeeeccccccCCCCCEEE
Confidence                22   23   778899999987557776

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=8.4e-20  Score=173.40  Aligned_cols=160  Identities=14%  Similarity=0.124  Sum_probs=125.4

Q ss_pred             CCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEE-c-CCCchHHHHHHHHcCCeEEEe
Q 018147          165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC-P-IPQYPLYSASIALHGGTLVPY  242 (360)
Q Consensus       165 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv-~-~P~y~~~~~~~~~~g~~~~~v  242 (360)
                      +..+.+++++..++++..     ...+++++|+|+++|+..++.++.  +||.|++ + .|+|+.|...++..|++++..
T Consensus        48 ~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~~~l~al~--~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~  120 (366)
T d2aeua1          48 SSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAILATILALK--PKKVIHYLPELPGHPSIERSCKIVNAKYFES  120 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHC--CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE
T ss_pred             chhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHHHHHHHHhC--CCCEEEEecCCCcchhHHHHHHhcCCeEECC
Confidence            444667788877777632     245789999999999999999875  5666654 3 589999999999999986532


Q ss_pred             ecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 018147          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (360)
Q Consensus       243 ~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~  322 (360)
                        +       |+++|++++++      ++|+|++++|+||+  +++.+++++|+++|++||+++|+||+|+..+|+... 
T Consensus       121 --~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~-  182 (366)
T d2aeua1         121 --D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-  182 (366)
T ss_dssp             --S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-
T ss_pred             --C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccccc-
Confidence              1       78999998887      89999999999986  467889999999999999999999999988776432 


Q ss_pred             CCCHHHHHHhhCCCCCCceEEEEeccCcCccccccccC
Q 018147          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFSKW  360 (360)
Q Consensus       323 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~RvGw  360 (360)
                      ..+...    ++   -+   +++.|+||+++ |+|+||
T Consensus       183 ~~~~~~----~~---~d---i~~~S~sK~~~-g~~~G~  209 (366)
T d2aeua1         183 QPPALK----LG---AD---LVVTSTDKLME-GPRGGL  209 (366)
T ss_dssp             CCCHHH----HT---CS---EEEEETTSSSS-SCSCEE
T ss_pred             CCCHhh----cC---ce---EEEeccccccc-ccceeE
Confidence            222221    11   12   78899999775 689998

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.2e-18  Score=166.29  Aligned_cols=158  Identities=15%  Similarity=0.204  Sum_probs=127.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCCC------------cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAYSHS------------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~------------~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      ..+.++.+++++.+.+....     .|+++            .-+.++|+.+|+++      ++++++|++|+|++++++
T Consensus        11 ~~p~~~~v~ea~~~~~~~~~-----~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l------g~~~~~I~~~~~~t~~l~   79 (391)
T d1p3wa_          11 TTPVDPRVAEKMMQFMTMDG-----TFGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVFTSGATESDN   79 (391)
T ss_dssp             CCCCCHHHHHHHHTTTSTTS-----CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESSHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHhcc-----ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHH
Confidence            34668899999887765432     22221            11346788888887      578999999999999999


Q ss_pred             HHHHHHc---cCCCCEEEEcCCCchHHHHHHH---HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          205 MMMQLLI---RSENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       205 ~~~~~l~---~~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      .++.++.   .++||+|++.++.|+.+...++   ..|+++..++.+.+  ..+|++++++++++      ++++|++++
T Consensus        80 ~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~~~~~i~~------~T~lv~is~  151 (391)
T d1p3wa_          80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRD------DTILVSIMH  151 (391)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCT------TEEEEECCS
T ss_pred             HHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC--CeEcHHHHHHhCCC------CcEEEEEEC
Confidence            9888753   1499999999999998765544   45999999998764  47899999999987      899999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 018147          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~  316 (360)
                      ++||||.+++   +++|+++|+++|+++++|.+|....
T Consensus       152 ~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~  186 (391)
T d1p3wa_         152 VNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGK  186 (391)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTT
T ss_pred             CCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCC
Confidence            9999999999   8889999999999999999987643

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.73  E-value=1.3e-17  Score=158.27  Aligned_cols=190  Identities=19%  Similarity=0.166  Sum_probs=131.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCCcC----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCC
Q 018147          139 LFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~  214 (360)
                      ..|..+++++.+.+......+...|.....    +.++|+.+|+++      ++++++|++|+|++++++.++.++...+
T Consensus        18 ~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~i~~~~g~t~a~~~~~~~l~~~~   91 (381)
T d1elua_          18 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITDNVTTGCDIVLWGLDWHQ   91 (381)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEESSHHHHHHHHHHHSCCCT
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh------CCCcccEEEECChHHHhhhcchhhhhcC
Confidence            567788888877765432101222222222    334566666665      4678999999999999999999985469


Q ss_pred             CCEEEEcCCCchHHH----HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          215 NDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       215 gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      ||+|+++++.|+...    ...+..|++++.++.+.......+.+.+++++++      +++++++++++||||.+++  
T Consensus        92 g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~------~t~~v~i~~~~n~tG~~~~--  163 (381)
T d1elua_          92 GDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP--  163 (381)
T ss_dssp             TCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC--
T ss_pred             CceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc------cccccccccccccccccch--
Confidence            999999999998644    3455579999999877553323335556655554      8999999999999999999  


Q ss_pred             HHHHHHHHHHHc----CCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccccccc
Q 018147          291 NQRAIVDFCKKE----GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       291 ~l~~i~~la~~~----~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                       +++|.++|+++    ++++++|.++.-....     ..+    ..+   ..|   +++.|+.|.+++...+
T Consensus       164 -~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~-----~~~----~~~---~~D---~~~~s~~K~~~~p~G~  219 (381)
T d1elua_         164 -LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-----LDF----SRL---EVD---YYAFTGHKWFAGPAGV  219 (381)
T ss_dssp             -HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-----CCT----TTS---CCS---EEEEESSSTTCCCTTC
T ss_pred             -hhHHHHHHhhccccccccccccccccccccc-----ccc----ccc---ccc---cccccccccccccchh
Confidence             67778888874    6999999998753221     111    111   123   7788889987754433

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=1.9e-15  Score=142.90  Aligned_cols=192  Identities=12%  Similarity=0.135  Sum_probs=137.8

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCC----CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--
Q 018147          137 QGLFSADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--  210 (360)
Q Consensus       137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l--  210 (360)
                      ...+|+.+++++.+.+.+........|..    ...+.+.|+.+|+++      ++++++|++++|+|+++..++..+  
T Consensus        10 ~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~------~~~~~~i~~~~~~T~~l~~~~~~~~~   83 (376)
T d1eg5a_          10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTVAE   83 (376)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHhhhhcccc
Confidence            34668889999888887642111111111    112345678888887      578999999999999999988653  


Q ss_pred             -ccCCCCEEEEcCCCchHHHHHH---HHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          211 -IRSENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       211 -~~~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                       ...+|+.|++....|+.+....   +..|++++.+|++++  +.+|++++++++++      ++++|++++++|+||..
T Consensus        84 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~--~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~  155 (376)
T d1eg5a_          84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDE------DTFLVSIMAANNEVGTI  155 (376)
T ss_dssp             HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCT------TEEEEEEESBCTTTCBB
T ss_pred             cccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC--CeECHHHHHHhcCC------CceEEEEECCcccccee
Confidence             2247889999998888766544   556999999999865  48999999999987      89999999999999999


Q ss_pred             CCHHHHHHHHHHHH--HcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc-cccccC
Q 018147          287 LAEENQRAIVDFCK--KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF-HFFSKW  360 (360)
Q Consensus       287 ~~~~~l~~i~~la~--~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~RvGw  360 (360)
                      ++   ++++.++++  +.++++++|.++.-....-+     +.    .++   .|   +++.|+.|.+++ |..++|
T Consensus       156 ~~---~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d-----~~----~~~---~D---~~~~s~~K~~gp~G~~~l~  214 (376)
T d1eg5a_         156 QP---VEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-----LE----KLE---VD---YASFSAHKFHGPKGVGITY  214 (376)
T ss_dssp             CC---HHHHHHHHHHHCTTCEEEEECTTTTTTSCCC-----CT----TTC---CS---EEEEEGGGGTSCTTCEEEE
T ss_pred             ee---ehhhhhhhhhcccCceeEEEeeecccccccc-----cc----ccC---cc---ceecccceeecCCCceeEE
Confidence            99   555555554  44899999988866332211     11    111   23   788999998765 666554

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.7e-14  Score=137.99  Aligned_cols=193  Identities=12%  Similarity=0.087  Sum_probs=140.9

Q ss_pred             cccCcc-CCCCCHHHHHHHHHHHHcCCCC-CCCCCCCC----cCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          131 LDRSET-QGLFSADSIERAWQILDQIPGR-ATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~-~~~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      +.|+.+ ....|..+++++.+.+.+.... +...|...    .-+.+.|+.+|+++    | ...+++|++|.|+|++++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~-~~~~~~i~~~~~~T~~~~   98 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----N-ARSAEELVFVRGTTEGIN   98 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----T-CSCGGGEEEESSHHHHHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----C-CCCcccccccCcHHHHHH
Confidence            344444 3467899999998877764210 01111111    12456677777776    3 134689999999999999


Q ss_pred             HHHHHHc---cCCCCEEEEcCCCchH----HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 018147          205 MMMQLLI---RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (360)
Q Consensus       205 ~~~~~l~---~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~  277 (360)
                      .++..+.   ..+||+|++..-.|+.    +....+..|++++.+|+++++  .+|++.+++++++      ++++++++
T Consensus        99 ~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~~~~~~~~~i~~------~t~lv~~~  170 (405)
T d1jf9a_          99 LVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLPTLFDE------KTRLLAIT  170 (405)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CBCGGGHHHHCCT------TEEEEEEE
T ss_pred             HHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cCCHHHHHHhccC------CcEEEEEe
Confidence            8887632   2589999999999986    445556779999999998764  6889999988877      89999999


Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       278 ~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +.+|.||.++|   +++|+++|+++|+++++|.++.--..     ...+..    ++   .|   +++.|.-|.++|
T Consensus       171 ~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~-----~id~~~----~~---~D---~~~~s~hK~~Gp  229 (405)
T d1jf9a_         171 HVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQA----LD---CD---FYVFSGHKLYGP  229 (405)
T ss_dssp             SBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHH----HT---CS---EEEEEGGGTTSC
T ss_pred             cCCCcccccCc---hHHhhhHHHHcCCeeecccceecccc-----ccchhh----cC---Cc---eeeccccccccC
Confidence            99999999999   99999999999999999998876322     222222    21   34   788999998654

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.3e-13  Score=131.71  Aligned_cols=200  Identities=13%  Similarity=0.079  Sum_probs=146.9

Q ss_pred             CCCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCC----CCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 018147          127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAY----SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA  199 (360)
Q Consensus       127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y----~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga  199 (360)
                      ..+++||+++   ...-+|++++++.+.++..+. +....    +...-..+|.+.+|+|+    |    .+.+++++++
T Consensus        44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~-~~~~sr~~~g~~~~~~~lE~~lA~~~----g----~e~al~~~SG  114 (401)
T d1fc4a_          44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGF-GMASVRFICGTQDSHKELEQKLAAFL----G----MEDAILYSSC  114 (401)
T ss_dssp             SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCS-CCCSCHHHHCCBHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred             CCEEEEEEccccccccCCHHHHHHHHHHHHHhCC-CcccceeeccCcHHHHHHHHHHHHhh----c----CCceEEecch
Confidence            4567888887   334589999999999887543 12111    12223456777777766    3    5778999999


Q ss_pred             HHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       200 ~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      ..|...++..++. ++|.|++..-.|..+...+...++++..++.       .|.+.+++.++.....+....+|++...
T Consensus       115 ~~An~~~i~~l~~-~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~liv~egv  186 (401)
T d1fc4a_         115 FDANGGLFETLLG-AEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGV  186 (401)
T ss_dssp             HHHHHTTHHHHCC-TTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred             hhhhHHHHHHhcC-CCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEEEEcCC
Confidence            9999999999994 9999999999999999999999998887653       3778888887776555545555555555


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcc
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRY  353 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~  353 (360)
                      .+..|.+.+   +++|.++|++||+++|+||++...+++...  ........    ..++ ..|++.||||+++
T Consensus       187 ~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G--~G~~~~~~----~~~~-~dii~~tl~Ka~g  250 (401)
T d1fc4a_         187 FSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RGSHEYCD----VMGR-VDIITGTLGKALG  250 (401)
T ss_dssp             ETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CCHHHHTT----CTTC-CSEEEEESSSTTC
T ss_pred             CCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCC--Cccchhcc----CCCC-CeEEEeecccccc
Confidence            666787777   999999999999999999999999887642  22322221    1123 2478999999995

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=2.4e-14  Score=134.87  Aligned_cols=149  Identities=15%  Similarity=0.195  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      ++.+.++++.+.+++.    .  |.......+|.+.+|+++    |    .+++++++++|.|+.+++.++..++||+|+
T Consensus        10 ~~~~~~~~~~~~~~~~----~--~~~G~~v~~~E~~la~~~----g----~~~ai~~~sgt~Al~~al~al~~~~gdeVi   75 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSG----W--ITTGPKNQELEAAFCRLT----G----NQYAVAVSSATAGMHIALMALGIGEGDEVI   75 (376)
T ss_dssp             CCHHHHHHHHHHHHHT----C--CSSSHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCHHHHHHHHHHHhcC----C--CcCCHHHHHHHHHHHHHH----C----cCeEEEeCCHHHHHHHHHHHhCCCCCCEEE
Confidence            4677778888888763    2  333345788999999988    2    356788888899999999998325999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      ++..+|.....++...|++++.++++.+ +|.+|++.|++++++      ++++|+++|   ..|...+   +++|.++|
T Consensus        76 ~~~~~~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~------~tkaIi~~h---~~G~~~~---~~~i~~i~  142 (376)
T d1mdoa_          76 TPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPVH---YAGAPAD---LDAIYALG  142 (376)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHH
T ss_pred             Eecccccccccchhccccceeeeccccc-ccCCCHHHHHHhcCC------CCeEEEEeC---CCCCccc---hhHHHHHH
Confidence            9999999999999999999999999876 578999999999987      799999775   4677666   88999999


Q ss_pred             HHcCCEEEEccCCCCC
Q 018147          300 KKEGLVLLADEVYQEN  315 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~  315 (360)
                      +++|++||+|+++...
T Consensus       143 ~~~~i~vIeD~a~a~g  158 (376)
T d1mdoa_         143 ERYGIPVIEDAAHATG  158 (376)
T ss_dssp             HHHTCCBCEECTTCTT
T ss_pred             HhcCceEEeccchhcc
Confidence            9999999999998764

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=7.3e-14  Score=132.21  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~  244 (360)
                      ...|.+.+|+..    |    .+..+++++++.|+..++..+++ +||+|+++...|.+....++.    .|.++..++.
T Consensus        61 ~~~LE~~la~LE----g----~~~a~~~~SGmaAi~~~l~~l~~-~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~  131 (392)
T d1gc0a_          61 LNLLEARMASLE----G----GEAGLALASGMGAITSTLWTLLR-PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM  131 (392)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHh----C----CcceeehhhHHHHHHHHHHhhcc-CCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence            455566666554    3    46788899999999999999995 999999999999877666554    5888888753


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                             .|++++++++++      ++|+|++.+|.|||..+.+   +++|+++|+++|+++++|..|..-++...    
T Consensus       132 -------~d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~P----  191 (392)
T d1gc0a_         132 -------ADLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRP----  191 (392)
T ss_dssp             -------TCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCG----
T ss_pred             -------cCHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccCh----
Confidence                   278999999887      8999999999999999999   99999999999999999999986444321    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       +     +++   -|   |+++|.+|.++|
T Consensus       192 -l-----~~G---aD---ivihS~TKyi~G  209 (392)
T d1gc0a_         192 -L-----ELG---AD---LVVHSATKYLSG  209 (392)
T ss_dssp             -G-----GGT---CS---EEEEETTTTTTC
T ss_pred             -H-----HhC---CC---EEEEecceeecC
Confidence             1     222   24   899999999876

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=5.2e-13  Score=126.71  Aligned_cols=199  Identities=13%  Similarity=0.032  Sum_probs=148.5

Q ss_pred             cCCCCccccCcc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCC
Q 018147          125 CDHPSILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG  198 (360)
Q Consensus       125 ~~~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~G  198 (360)
                      +++.+++||+++   ...-.|++++++.+.+++.+..   ....++...-..+|.+.+|+|+    |    .+..+++++
T Consensus        35 ~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g----~e~al~~~S  106 (383)
T d1bs0a_          35 ADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G----YSRALLFIS  106 (383)
T ss_dssp             ETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T----CSEEEEESC
T ss_pred             ECCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----C----CCceEEecc
Confidence            356678888887   3345889999999999875320   1122333333567777777776    3    567888888


Q ss_pred             hHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       199 a~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      +..+...++.++.. ++|.|++..-.|..+...++..+.+++.++.       .|++++++.+...   ..+.++|++..
T Consensus       107 G~~an~~~i~al~~-~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~---~~~~~~vv~e~  175 (383)
T d1bs0a_         107 GFAANQAVIAAMMA-KEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEG  175 (383)
T ss_dssp             HHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEES
T ss_pred             cchhhHHHHHhhcC-CCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhccc---CCCceEEEecC
Confidence            88999999999995 9999999999999999999999999988763       3788998887642   22455677778


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +.+.+|.+.+   +++|.++|++||+++++||+|...+++...  ..+....   + . .  ..+++.++||+++.
T Consensus       176 v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g--~G~~~~~---~-~-~--~~~~~~t~~ka~g~  239 (383)
T d1bs0a_         176 VFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG--RGSCWLQ---K-V-K--PELLVVTFGKGFGV  239 (383)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGG--CCHHHHT---T-C-C--CSEEEEESSSTTSS
T ss_pred             CCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcc--cchHHHc---C-C-c--cccccccccccccc
Confidence            8999999999   888889999999999999999998887542  2222221   1 1 1  23677899998864

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.50  E-value=2.1e-13  Score=123.14  Aligned_cols=172  Identities=13%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             CccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccC
Q 018147          134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      |+++.+.+|++++++.+....    ...+|++..+.+++|+.+|+++      ++++++|++|+|+++++..++..+.. 
T Consensus         6 nd~~~g~~P~v~eAl~~~~~~----~~~~y~~~~~~~~lr~~ia~~~------g~~~~~v~~tsggtean~~a~~~~~~-   74 (340)
T d1svva_           6 NDYSVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELL------ERPDADVHFISGGTQTNLIACSLALR-   74 (340)
T ss_dssp             CSCSSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHH------TCTTSEEEEESCHHHHHHHHHHHHCC-
T ss_pred             cCCCCCCCHHHHHHHHHHhhc----CCCCCCCCHHHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHHhh-
Confidence            556667899999998876544    2456888888889999999998      46778999999999999999999985 


Q ss_pred             CCCEEEEcCCCchHHHHHHHH--cCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          214 ENDGILCPIPQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      +++.+++..+.+..+......  .+...........   ..+.+....+.............++++.+.|.+|.+...++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (340)
T d1svva_          75 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG---KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE  151 (340)
T ss_dssp             TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTS---CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHH
T ss_pred             hccccccccccceeeeecccccccceeeeecccccc---cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHH
Confidence            999999999988876543333  3344443332222   34455555544432222223344555555555778889999


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCCCccCC
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQENVYVP  319 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~~~~~~  319 (360)
                      +..+.+.|.+++.+++.|++|.......
T Consensus       152 ~~~~~~~~~~~g~~~~~d~a~~~~~~~~  179 (340)
T d1svva_         152 LEDISASCKEHGLYLFLDGARLASALSS  179 (340)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTHHHHHTS
T ss_pred             hhhhhcccccccceeeeeccceeeeecc
Confidence            9999999999999999999997644443

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.48  E-value=8.6e-13  Score=124.87  Aligned_cols=154  Identities=16%  Similarity=0.251  Sum_probs=118.2

Q ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHH----HHHHcCC
Q 018147          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGG  237 (360)
Q Consensus       162 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~----~~~~~g~  237 (360)
                      .|+.. |.+ .++.+.+.+....|    .+..+++++++.|+..++..+++ +||+|+++...|.....    .+...|.
T Consensus        56 ~Y~R~-~nP-T~~~LE~~la~LEg----g~~a~~~sSGmaAi~~~l~~ll~-~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi  128 (397)
T d1y4ia1          56 IYTRL-GNP-TTDALEKKLAVLER----GEAGLATASGISAITTTLLTLCQ-QGDHIVSASAIYGCTHAFLSHSMPKFGI  128 (397)
T ss_dssp             CCCTT-SCH-HHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred             eeeCC-CCH-HHHHHHHHHHHHhC----CccceeehHHHHHHHHHHhhccC-CCCeeeeecccccccchhhhcccCCCce
Confidence            45543 232 34444444444433    45678888999999999999995 99999999999986544    4556799


Q ss_pred             eEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       238 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      ++..++..       |++.+++++++      ++|+|++..|.|||..+.+   +++|+++|+++|+++|+|..+..-.+
T Consensus       129 ~~~~vd~~-------d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~  192 (397)
T d1y4ia1         129 NVRFVDAG-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC  192 (397)
T ss_dssp             EEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred             EeeccCCC-------CHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc
Confidence            99887532       68999999876      8999999999999999999   99999999999999999999886433


Q ss_pred             CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       318 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ..     ++     +++   -|   |+++|.+|.++|
T Consensus       193 ~~-----Pl-----~~G---aD---ivihS~TKyi~G  213 (397)
T d1y4ia1         193 QQ-----PL-----QLG---AD---IVVHSVTKYING  213 (397)
T ss_dssp             CC-----GG-----GGT---CS---EEEEETTTTTTC
T ss_pred             Cc-----ch-----hcC---CC---EEEEehhhhcCC
Confidence            22     11     222   24   899999999887

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=7.2e-13  Score=125.06  Aligned_cols=145  Identities=16%  Similarity=0.203  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHH----HcCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~  244 (360)
                      ...|.+.+|++-    |    .+..+++++++.|+..++.++++ +||.|++....|......+.    ..|..+..+. 
T Consensus        52 ~~~le~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~-~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d-  121 (384)
T d1cs1a_          52 RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLK-PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-  121 (384)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC-
T ss_pred             HHHHHHHHHHHh----C----CCceEEecChHHHHHHHHhhccc-ccceecccccccchhhhhhhhhhccccccccccc-
Confidence            445566666554    3    46788999999999999999995 99999999999976644433    3466666554 


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                            ..|.+++++++.+      ++++|++..|.|||..+.+   +++|+++|+++|+++|+|+.+..-.+...    
T Consensus       122 ------~~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~P----  182 (384)
T d1cs1a_         122 ------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQNP----  182 (384)
T ss_dssp             ------TTCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCG----
T ss_pred             ------CCCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccccc----
Confidence                  2378899998887      8999999999999999999   99999999999999999999965333221    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       +     +++   -|   |+++|.+|.++|
T Consensus       183 -l-----~~G---aD---iVvhS~TKyi~G  200 (384)
T d1cs1a_         183 -L-----ALG---AD---LVLHSCTKYLNG  200 (384)
T ss_dssp             -G-----GGT---CS---EEEEETTTTTTC
T ss_pred             -c-----ccC---CC---EEEEcccccccc
Confidence             1     122   24   899999999886

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=5.9e-13  Score=125.59  Aligned_cols=144  Identities=17%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~  244 (360)
                      ...|.+.+|++-    |    .+..+++++++.|+..+ ..++ .+||+|++..+.|......++.    .|.++..+..
T Consensus        51 ~~~le~~la~LE----~----~~~a~~fsSGMaAisal-l~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~  120 (380)
T d1ibja_          51 RDALESLLAKLD----K----ADRAFCFTSGMAALSAV-THLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  120 (380)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHc----C----CceEEehhhHHHHHHHH-HHhh-CCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence            345555555543    3    46678888889999755 4566 4999999999999987766655    5777777642


Q ss_pred             CCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCC
Q 018147          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~  324 (360)
                             .+.+++++++++      ++|+|++..|.|||..+.+   +++|+++|+++|+++|+|+.+...+....    
T Consensus       121 -------~~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~P----  180 (380)
T d1ibja_         121 -------TKLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSRP----  180 (380)
T ss_dssp             -------TSHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCCG----
T ss_pred             -------chHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccccc----
Confidence                   268889888866      8999999999999999999   99999999999999999999976443321    


Q ss_pred             CHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          325 SFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       325 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       +     .++   -|   |+++|++|.++|
T Consensus       181 -l-----~~G---aD---iVvhS~TKyi~G  198 (380)
T d1ibja_         181 -L-----ELG---AD---IVMHSATKFIAG  198 (380)
T ss_dssp             -G-----GTT---CS---EEEEETTTTTTC
T ss_pred             -c-----ccC---CC---EEEecccceecc
Confidence             1     111   24   899999999887

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=7e-14  Score=128.10  Aligned_cols=171  Identities=13%  Similarity=0.141  Sum_probs=128.0

Q ss_pred             cccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 018147          131 LDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (360)
Q Consensus       131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~  209 (360)
                      +||.+. ...++|++++++.+..   .  +...|++.....+|++.+|+++    |    .+++++++|+++|+..++++
T Consensus         2 ~~~~~~~~t~p~p~v~~A~~~a~---~--g~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a   68 (343)
T d1m6sa_           2 IDLRSDTVTKPTEEMRKAMAQAE---V--GDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMA   68 (343)
T ss_dssp             EECSCGGGCCCCHHHHHHHHTCC---C--CCGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHhhh---c--CCcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHH
Confidence            444333 2345778888875431   1  3456888777899999999886    3    35788999999999999999


Q ss_pred             HccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEe-cCCCCccc
Q 018147          210 LIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQ  285 (360)
Q Consensus       210 l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~-~P~NPTG~  285 (360)
                      +.. +||.+++..+.+..+..   .....+..+..++...   ...|++.+++.+........++..+++. .++|+.|.
T Consensus        69 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  144 (343)
T d1m6sa_          69 HTQ-RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR  144 (343)
T ss_dssp             HCC-TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEET---TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred             Hhc-cCCceeccccccceeeecccccccccceeecccccc---CccCHHHHHHhhhhhhcccccccccccccccccCCce
Confidence            995 99999999998876643   3334455666665443   3679999999887644444456655555 66899999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~  318 (360)
                      +.+.+++++|+++|+++|++++.|++|..+...
T Consensus       145 ~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~  177 (343)
T d1m6sa_         145 VVPLENIKEICTIAKEHGINVHIDGARIFNASI  177 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHH
T ss_pred             ecCHHHHHHHHHHHHhcCeEEEecccccccccc
Confidence            999999999999999999999999999876543

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.42  E-value=4.5e-12  Score=120.96  Aligned_cols=192  Identities=18%  Similarity=0.179  Sum_probs=136.3

Q ss_pred             cccCcc-CCCCCHHHHHHHHHHHHcCCCC-CCCCCCCC----cCcHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHH
Q 018147          131 LDRSET-QGLFSADSIERAWQILDQIPGR-ATGAYSHS----QGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAV  203 (360)
Q Consensus       131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~-~~~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~-~~~I~~t~Ga~~al  203 (360)
                      +.|+.+ ....|+.+++++.+.+.+.... ....|...    .-+++.|+.+|+++      +++ ++.|++++++++++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll------ga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI------NARSPREIVYTRNATEAI   97 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT------TCSCGGGEEEESSHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCcccEEeecchHHHH
Confidence            334333 3356889999998887764220 01112111    12345677777776      354 57799999999999


Q ss_pred             HHHHHHH---ccCCCCEEEEcCCCchHH----HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEE
Q 018147          204 HMMMQLL---IRSENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV  276 (360)
Q Consensus       204 ~~~~~~l---~~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil  276 (360)
                      +.++..+   ...+||+|++.+-.|+..    ....+..|.++..++.+...  ..+.+.+++++++      ++++|.+
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~l~~~~~~------~t~lv~i  169 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQE--SFDLEHFKTLLSE------KTKLVTV  169 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTS--SBCHHHHHHHCCT------TEEEEEE
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccc--cccHHHhhhccCC------CceEEEE
Confidence            9888662   224899999999888853    34556679999999887653  6789999998876      8999999


Q ss_pred             ecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       277 ~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++-+|-||.+++   +++|.++|+++|+++|+|.++.--..     ...+...    +   .|   +++.|.-|.++|
T Consensus       170 ~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~-----~id~~~~----~---~D---~~~~s~hK~~gp  229 (408)
T d1t3ia_         170 VHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLI----D---CD---WLVASGHKMCAP  229 (408)
T ss_dssp             ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHH----T---CS---EEEEEGGGTTSC
T ss_pred             ecccccccccCc---HHHHhhhhhccCceeeeccceecccc-----ccccccc----C---Cc---eEEeccccccCC
Confidence            999999999999   88899999999999999988876221     2223222    1   34   678888896544

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.41  E-value=8e-12  Score=118.64  Aligned_cols=203  Identities=11%  Similarity=0.069  Sum_probs=138.9

Q ss_pred             CCccccCcc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 018147          128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH  204 (360)
Q Consensus       128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~  204 (360)
                      .++++|+++   .....+++++++.+.++..+. +..+-....|...+.+.+.+.+.+.+|    .+..++.+.+..|..
T Consensus        45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~-gs~~Sr~~~G~~~~h~~LE~~lA~~~g----~e~all~~sG~~An~  119 (396)
T d2bwna1          45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGA-GSGGTRNISGTTAYHRRLEAEIAGLHQ----KEAALVFSSAYNAND  119 (396)
T ss_dssp             EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCS-CCCSBTTTBCCBHHHHHHHHHHHHHTT----CSEEEEESCHHHHHH
T ss_pred             eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCC-CccccccccCCchHHHHHHHHHHHHhC----CCceeeeecchHHHH
Confidence            457888888   556788999999999987543 222222233443344444444444334    456666666666666


Q ss_pred             HHHHHHc-cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          205 MMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       205 ~~~~~l~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      .++.++. ..++|.|+...-.+......++..+++++.++..       |++.+++.++...+  .+.++|++..--.-+
T Consensus       120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~--~~~~~iv~egvySmd  190 (396)
T d2bwna1         120 ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMD  190 (396)
T ss_dssp             HHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTT
T ss_pred             HHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcc--cCceeEEEEeeccCc
Confidence            6677663 1488999999999999999999999999887643       67888777654221  234456655667778


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      |-+.+   +.+|+++|++||+++++||+|+-.+++...  ..+..... +.   +. ..|+++||||+|++
T Consensus       191 Gd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G--~G~~~~~~-~~---~~-~di~~gTlsKa~g~  251 (396)
T d2bwna1         191 GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG--AGVAERDG-LM---HR-IDIFNGTLAKAYGV  251 (396)
T ss_dssp             CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS--CCHHHHHT-CG---GG-CSEEEEESSSTTCS
T ss_pred             ccccc---cHhHHHHhhhhcceeeeccceeeeeecccc--ccchhhcC-Cc---ee-eeeeeecccccccc
Confidence            99999   999999999999999999999999887642  23332211 11   22 35889999999874

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=3e-12  Score=121.96  Aligned_cols=146  Identities=17%  Similarity=0.182  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HHHcCCeEEEeecCCC
Q 018147          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYLDEA  247 (360)
Q Consensus       172 lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~  247 (360)
                      .++.+.+.+....|    .+..+++++++.|+..++..+++ +||+|+++...|.+....    +...|.++..++..+ 
T Consensus        59 T~~~LE~~la~LE~----~~~a~~~~SGmaAi~~~~~~l~~-~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~-  132 (421)
T d2ctza1          59 TVDVLEKRLAALEG----GKAALATASGHAAQFLALTTLAQ-AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-  132 (421)
T ss_dssp             HHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred             HHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHhhcc-cccceeecCCcCCchhHHHHHHHhhccccceeccccc-
Confidence            34444444444433    46688889999999999999995 999999999999876544    456788888765432 


Q ss_pred             CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCC-C-CccCCCCCCCC
Q 018147          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-E-NVYVPEKKFHS  325 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~-~-~~~~~~~~~~s  325 (360)
                           +.+..++.+++      ++|+|++..|.|||..+.+   +++|+++|+++|+++|+|+.+. . +.+.      +
T Consensus       133 -----~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~------P  192 (421)
T d2ctza1         133 -----RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR------P  192 (421)
T ss_dssp             -----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC------G
T ss_pred             -----CcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc------c
Confidence                 34555555555      8999999999999999999   9999999999999999999986 3 2221      1


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +     .++   -|   |+++|.+|.++|
T Consensus       193 l-----~~G---aD---iVvhS~TKyl~G  210 (421)
T d2ctza1         193 L-----AWG---AA---LVTHSLTKWVGG  210 (421)
T ss_dssp             G-----GGT---CS---EEEEETTTTTTC
T ss_pred             c-----ccC---Cc---EEEEechhhccC
Confidence            1     122   24   899999999886

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.40  E-value=1.2e-11  Score=116.98  Aligned_cols=145  Identities=17%  Similarity=0.186  Sum_probs=110.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeec
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~  244 (360)
                      ...|.+.+|++.    |    .+..+++++++.|+..++.+++. +||.|++....|.+....++.    .|.++..++.
T Consensus        69 ~~~LE~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~-~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~  139 (398)
T d1qgna_          69 TVVLEEKISALE----G----AESTLLMASGMCASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP  139 (398)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHSC-SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred             HHHHHHHHHHHh----C----CceEEEecCcchHHHHHHhhccc-ccccccccccccchhhhhhcccccccccccccccc
Confidence            344555555543    3    46789999999999999999984 999999999999877655444    5787777652


Q ss_pred             CCCCCcCCCHHHHHHH-HHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCC
Q 018147          245 DEATGWGLETSEVKKQ-LEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (360)
Q Consensus       245 ~~~~~~~~d~~~L~~~-i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~  323 (360)
                             .+.++.++. +.+      ++++|++..|.|||..+.+   +++|+++|+++|+++|+|..+..-++...   
T Consensus       140 -------~~~~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P---  200 (398)
T d1qgna_         140 -------ADVGALELALNQK------KVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA---  200 (398)
T ss_dssp             -------SCHHHHHHHHHHS------CEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT---
T ss_pred             -------cchhhhhhhhccc------cceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc---
Confidence                   244544443 343      8999999999999999999   99999999999999999999976443321   


Q ss_pred             CCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       324 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        +     +++   -|   |+++|.+|.++|
T Consensus       201 --l-----~~G---aD---iVihS~TKy~~G  218 (398)
T d1qgna_         201 --L-----ALG---AD---LVLHSATKFLGG  218 (398)
T ss_dssp             --T-----TTT---CS---EEEECTTTTTTC
T ss_pred             --h-----hhC---CC---EEEEechhhcCc
Confidence              1     111   24   899999999887

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.9e-12  Score=124.61  Aligned_cols=142  Identities=9%  Similarity=0.072  Sum_probs=109.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-
Q 018147          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-  245 (360)
Q Consensus       169 ~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-  245 (360)
                      ...+...+.+++.+..|.+.....++.+.|+..++.+++.++.  ..+++.|+++...|+.+...+..+|++++.++.. 
T Consensus        92 ~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~  171 (445)
T d3bc8a1          92 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL  171 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence            4567777888888888865444444444444445544444431  1467899999999999999999999999888643 


Q ss_pred             CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       246 ~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .++++.+|+++|++++++...+  ++.+|++++|+|++|.+-+   +++|+++|+++|+++++|++|+..
T Consensus       172 ~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~  236 (445)
T d3bc8a1         172 EGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ  236 (445)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             cCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhh
Confidence            2345789999999999874322  5778888999999999987   999999999999999999999864

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.38  E-value=3.4e-12  Score=120.97  Aligned_cols=152  Identities=14%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vl  219 (360)
                      +..+.++++.+.++...   +. +....-...+.+.+|+++        ....++.++++|.|+.+++.++-.++||+|+
T Consensus        11 ~~~~~~~~~~~~l~~g~---~~-~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi   78 (384)
T d1b9ha_          11 YDDAERNGLVRALEQGQ---WW-RMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVI   78 (384)
T ss_dssp             CCHHHHHHHHHHHHTSC---CB-TTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCHHHHHHHHHHHHcCC---ee-ecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence            45667778888887642   11 122223688888888886        3467889999999999999987335999999


Q ss_pred             EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH
Q 018147          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (360)
Q Consensus       220 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la  299 (360)
                      +|..+|+.....+...|++++.++++++ ++.+|++.+++.+.+      ++++|++.+   ..|...+   +++|.++|
T Consensus        79 ~p~~t~~a~~~ai~~~g~~p~~~d~~~~-~~~~d~~~~~~~i~~------~tk~i~~~~---~~g~~~d---~~~i~~~~  145 (384)
T d1b9ha_          79 VPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIMPVH---MAGLMAD---MDALAKIS  145 (384)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHH
T ss_pred             Eecccccccccccccccccccccccccc-ccccchhhhcccccc------ccccccccc---ccccccc---cccchhhh
Confidence            9999999999999999999999998755 578999999998876      798887554   4455555   88999999


Q ss_pred             HHcCCEEEEccCCCCCc
Q 018147          300 KKEGLVLLADEVYQENV  316 (360)
Q Consensus       300 ~~~~i~lI~DeaY~~~~  316 (360)
                      +++++++|+|.++....
T Consensus       146 ~~~~i~lieD~a~a~ga  162 (384)
T d1b9ha_         146 ADTGVPLLQDAAHAHGA  162 (384)
T ss_dssp             HHHTCCBCEECTTCTTC
T ss_pred             hhhhhhhhhhhceeccc
Confidence            99999999999997644

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.37  E-value=1.1e-11  Score=120.08  Aligned_cols=179  Identities=17%  Similarity=0.153  Sum_probs=131.5

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeE
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~  239 (360)
                      ...|+......+|.+.+|+++        ..+.++++++++.|..++++++++ +||.|+.... +......+...|+..
T Consensus        68 Dd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l~~-~Gd~Vi~~~~-f~~~~~~i~~~g~~~  137 (456)
T d1c7ga_          68 DEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLAIK-PGQYVAGNMY-FTTTRFHQEKNGATF  137 (456)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHHCC-TTEEEEESSC-CHHHHHHHHHTTEEE
T ss_pred             chhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHhcC-CCCeEecCcc-hHHHHHHHHHcCcee
Confidence            446888888899999999998        356789999999999999999995 9999887765 455555667789888


Q ss_pred             EEeecCC--------CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          240 VPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       240 ~~v~~~~--------~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      +.+..+.        ...+.+|+++|+++|++..++  ++.++++.+|+|+. |.+++.+++++|.++|++||+.+++|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            8765431        124578999999999875222  45678888999985 688899999999999999999999999


Q ss_pred             CCCCCc--c----CCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          311 VYQENV--Y----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       311 aY~~~~--~----~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +.....  +    ...-...++.....++.. +-|   ++..|++|.+++
T Consensus       216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad---~~s~s~~K~~~~  261 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYENVSIKDIVHEMFS-YAD---GCTMSGKKDCLV  261 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCS---EEEEETTTTTCC
T ss_pred             chhhcchhhhcccccccCCCChhhhcccccc-ccc---cEEEeccccccc
Confidence            964210  0    010123455555444432 233   455689998763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.36  E-value=6.9e-13  Score=125.83  Aligned_cols=170  Identities=13%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             CccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCC--CCC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 018147          129 SILDRSET-QGLFSADSIERAWQILDQIPGRATGA--YSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV  203 (360)
Q Consensus       129 ~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~--Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al  203 (360)
                      +.+.|+.+ ....|..+++++.+.+.+........  +..  ..-.++.|+.+|+++      ++++++|++|.++|+++
T Consensus        27 ~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll------ga~~~ei~~~~~~T~~~  100 (404)
T d1qz9a_          27 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVTDTTSINL  100 (404)
T ss_dssp             TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEECSCHHHHH
T ss_pred             CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh------CCCCCcEEEecCchHHH
Confidence            34455555 34567778999888886642211111  000  112345677777766      57899999999999999


Q ss_pred             HHHHHHHc-----cCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEec
Q 018147          204 HMMMQLLI-----RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (360)
Q Consensus       204 ~~~~~~l~-----~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~  278 (360)
                      ..++....     ..+++.|++.+-.+++........+.++..++.+..  ...+++.+++++++      ++++|++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~------~T~lV~i~~  172 (404)
T d1qz9a_         101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR--LVDSPEELPQAIDQ------DTAVVMLTH  172 (404)
T ss_dssp             HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE--EESSGGGHHHHCST------TEEEEEEES
T ss_pred             HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc--ccccchhHHHhcCC------CceEEEEec
Confidence            88765321     147888888887766544433333333322222221  14467788888877      899999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       279 P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .+|.||.+++   +++|+++|+++|+++++|.++.--
T Consensus       173 v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g  206 (404)
T d1qz9a_         173 VNYKTGYMHD---MQALTALSHECGALAIWDLAHSAG  206 (404)
T ss_dssp             BCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             ccccccceec---HHHHhccccccccceeEEeecccc
Confidence            9999999999   999999999999999999988763

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=2.3e-12  Score=117.50  Aligned_cols=176  Identities=15%  Similarity=0.145  Sum_probs=130.1

Q ss_pred             CCccccCcc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 018147          128 PSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM  206 (360)
Q Consensus       128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~  206 (360)
                      |.+++|.+. ..+.+|+|++++.+....    ....|.......++|+.+|+++    |  . +.++++|+|+++|...+
T Consensus         2 ~~~~~f~s~n~~g~~P~v~~A~~~a~~~----~~~~~~~~~~~~~l~~~la~~~----g--~-~~~v~f~~sGt~An~~a   70 (345)
T d1v72a1           2 PPALGFSSDNIAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF----E--R-DVEVFLVPTGTAANALC   70 (345)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHH----T--S-CCEEEEESCHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCHHHHHHHHHHhcc----CccccCCCHHHHHHHHHHHHHH----C--C-CcEEEECCchHHHHHHH
Confidence            567888755 777899999998765332    3456777777888888888887    3  2 35799999999999999


Q ss_pred             HHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccE-EEEecCCCC
Q 018147          207 MQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINPGNP  282 (360)
Q Consensus       207 ~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~-iil~~P~NP  282 (360)
                      +..++. .++.+++....+.....   .....+..+..++....  ...+++.+++.+.........+.. ++...+.|+
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (345)
T d1v72a1          71 LSAMTP-PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA--AKLDIVRLRERTREKVGDVHTTQPACVSITQATE  147 (345)
T ss_dssp             HHTSCC-TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG--GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT
T ss_pred             HHHHHh-cCCccccccccceeeechhhHHHhcCccccccccccc--ccccHHHhhhhhcccccccccccceeeeeecccc
Confidence            998884 88888887766655432   33445666666544333  467999999988653322223443 444577889


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       283 TG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      .|...+.++++++.++|+++|+++++|+++....+
T Consensus       148 ~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~  182 (345)
T d1v72a1         148 VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL  182 (345)
T ss_dssp             TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred             ccccccchhhhhHHHHHHhcCceeeecccccceec
Confidence            99999999999999999999999999999976444

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.2e-11  Score=116.88  Aligned_cols=132  Identities=20%  Similarity=0.200  Sum_probs=105.8

Q ss_pred             CCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       190 ~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      .+..+++++++.|+..++..++. +||.|++....|......++.    .|.++..+...       |.+.+++++++  
T Consensus        73 ~~~a~~~~SGMaAi~~~l~~l~~-~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-------d~~~~~~~i~~--  142 (391)
T d1cl1a_          73 GAGCVLFPCGAAAVANSILAFIE-QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-------IGADIVKHLQP--  142 (391)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-------CGGGGGGTCCT--
T ss_pred             CccEEEeccccceeeehhhcccC-CCCeEEEecccccchhhhhhhcccccccccccccCc-------ccccccccccc--
Confidence            46789999999999999999985 999999999999987666554    58888876532       56777777766  


Q ss_pred             hcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEE
Q 018147          266 AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (360)
Q Consensus       266 ~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~--~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i  343 (360)
                          ++++|++..|.||+..+.+   +++|+++|++  +|+++|+|+.+....+...     +     +++   -|   |
T Consensus       143 ----~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~P-----l-----~~G---aD---i  199 (391)
T d1cl1a_         143 ----NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-----L-----DFG---ID---V  199 (391)
T ss_dssp             ----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-----G-----GGT---CS---E
T ss_pred             ----ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhcc-----c-----ccc---cc---e
Confidence                8999999999999999998   8888888866  4999999999987544321     1     122   24   8


Q ss_pred             EEeccCcCccc
Q 018147          344 SFQSVSKGRYF  354 (360)
Q Consensus       344 ~~~S~SK~~~g  354 (360)
                      +++|.+|.++|
T Consensus       200 vvhS~TKy~~G  210 (391)
T d1cl1a_         200 SIQAATKYLVG  210 (391)
T ss_dssp             EEEETTTTTTC
T ss_pred             EEeecchhccc
Confidence            99999999887

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.32  E-value=5.4e-12  Score=116.97  Aligned_cols=143  Identities=16%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeecCC
Q 018147          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDE  246 (360)
Q Consensus       171 ~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~  246 (360)
                      .|.+.+|++-        ..+..+++++++.|+..++..+++ +||+|+++...|.+..    ..++..|.++..++.. 
T Consensus         2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~-~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-   71 (331)
T d1pffa_           2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLK-AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-   71 (331)
T ss_dssp             HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCC-TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-
Confidence            4667777775        246788899999999999999985 9999999999997643    3466689998887643 


Q ss_pred             CCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHH-HHcCCEEEEccCCCCCccCCCCCCCC
Q 018147          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYVPEKKFHS  325 (360)
Q Consensus       247 ~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la-~~~~i~lI~DeaY~~~~~~~~~~~~s  325 (360)
                            |.+.+++++++      ++++|++..|.||+..+.+   ++++++++ +++|+++|+|..+...+....     
T Consensus        72 ------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~p-----  131 (331)
T d1pffa_          72 ------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTNP-----  131 (331)
T ss_dssp             ------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-----
T ss_pred             ------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccccc-----
Confidence                  56788888876      8999999999999999999   77777764 668999999999987443321     


Q ss_pred             HHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          326 FKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       326 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      +     .++   -|   |+++|.+|.++|
T Consensus       132 l-----~~G---aD---iVv~S~TKy~~G  149 (331)
T d1pffa_         132 L-----DLG---VD---IVVHSATKYING  149 (331)
T ss_dssp             G-----GGT---CS---EEEEETTTTTSS
T ss_pred             c-----ccC---CC---EEEecchhhcCC
Confidence            1     121   24   899999999987

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.30  E-value=4e-11  Score=113.45  Aligned_cols=146  Identities=16%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeecCCC
Q 018147          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEA  247 (360)
Q Consensus       172 lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~  247 (360)
                      .++++.+.+....|    .+..+++++++.|+..++.+++. +||.|++.+..|....    ..+...|..+..++..  
T Consensus        60 T~~~le~~la~LEg----~~~a~~~sSGmaAi~~~~l~l~~-~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~--  132 (394)
T d1e5ea_          60 TVSNLEGKIAFLEK----TEACVATSSGMGAIAATVLTILK-AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA--  132 (394)
T ss_dssp             HHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCC-TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred             HHHHHHHHHHHHhC----CcceeeeccchHHHHHHHHhhcc-cccccccccceeehhhHhHHHHhhccceeeeccCCC--
Confidence            34444444444434    46788888999999999999985 9999999999997643    3456679999888644  


Q ss_pred             CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCccCCCCCCCCH
Q 018147          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHSF  326 (360)
Q Consensus       248 ~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~-~~i~lI~DeaY~~~~~~~~~~~~s~  326 (360)
                           |.+++++++++      ++++|++..|.|||..+.+   ++++++.+++ +|+++|+|..+....+...     +
T Consensus       133 -----d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~~P-----l  193 (394)
T d1e5ea_         133 -----IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITNP-----V  193 (394)
T ss_dssp             -----STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCCG-----G
T ss_pred             -----CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccCCc-----h
Confidence                 46788888877      8999999999999999999   7788876665 6899999999976444321     1


Q ss_pred             HHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          327 KKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       327 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                           +++   -|   |+++|.+|.++|
T Consensus       194 -----~~G---aD---iVvhS~TKy~~G  210 (394)
T d1e5ea_         194 -----DFG---VD---VVVHSATKYING  210 (394)
T ss_dssp             -----GGT---CS---EEEEETTTTTTC
T ss_pred             -----hcC---CC---EEEechhhhcCC
Confidence                 222   24   899999999887

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.25  E-value=5.4e-11  Score=113.97  Aligned_cols=138  Identities=8%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecC-CCC
Q 018147          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EAT  248 (360)
Q Consensus       171 ~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~  248 (360)
                      .+...+..++.+..|.  +.....+..|+++++..++.++.. .+++.|+++.-.|+.+...+...|+.++.++.. .+.
T Consensus       113 ~~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~  190 (434)
T d2z67a1         113 ALTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGD  190 (434)
T ss_dssp             HHHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCC
Confidence            3334444445555553  234455566777777666666531 278999999999999999999999999888642 233


Q ss_pred             CcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       249 ~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      .+.+|+++|++++++..+.+ ++.+|++++|++++|.+-+   +++|+++|+++|+++++|++|+.
T Consensus       191 ~~~~d~~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~  252 (434)
T d2z67a1         191 RVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAI  252 (434)
T ss_dssp             EEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred             ccCCCHHHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchh
Confidence            56799999999998765544 5667888899999999877   99999999999999999999976

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.9e-11  Score=113.77  Aligned_cols=167  Identities=16%  Similarity=0.132  Sum_probs=120.6

Q ss_pred             CCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 018147          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM  207 (360)
Q Consensus       128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~  207 (360)
                      |..+-+..||..+|+.|++++..    ..   .+..  +....++.+.+.+.+++.+|.+ +...|+++.|+|++++.++
T Consensus        18 ~~~~l~~pGP~~~~~~Vl~am~~----~~---i~HR--s~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i   87 (388)
T d1h0ca_          18 PNQLLLGPGPSNLPPRIMAAGGL----QM---IGSM--SKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAAL   87 (388)
T ss_dssp             CCCEECSSSCCCCCHHHHHHHTC----CC---CCTT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHH
T ss_pred             CcCccccCCCCCCCHHHHHHhCc----CC---CCCC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHH
Confidence            45555778888999999877531    11   1111  1223444444444444444532 2336999999999999999


Q ss_pred             HHHccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          208 QLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       208 ~~l~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      ..++. +|+.|++....+...  .......+..+..+..+..  -.+|.+++++.+...     +++++++++.+|.||.
T Consensus        88 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~  159 (388)
T d1h0ca_          88 VNVLE-PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG--GHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGV  159 (388)
T ss_dssp             HHHCC-SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTE
T ss_pred             HHhhc-cCCceeeecccceeeeeccccccccccccccccCCc--cccchHHHHHHhccC-----CcceEEEeeeeecccc
Confidence            99995 999999999887754  3344556776666665544  378888888887765     8999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      +.+   +++|.++|+++|+++++|.+..-.
T Consensus       160 i~p---i~~i~~~~~~~g~~~~vD~~qs~g  186 (388)
T d1h0ca_         160 LQP---LDGFGELCHRYKCLLLVDSVASLG  186 (388)
T ss_dssp             ECC---CTTHHHHHHTTTCEEEEECTTTTT
T ss_pred             ccC---HHHHHHHhhcccccceeccccccc
Confidence            999   899999999999999999988753

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.23  E-value=2.1e-11  Score=118.00  Aligned_cols=144  Identities=15%  Similarity=0.245  Sum_probs=110.8

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC-------CEEEEcCCCchHHHHHH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQYPLYSASI  232 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g-------d~Vlv~~P~y~~~~~~~  232 (360)
                      ...|+...+..+|++.+++++    |    .+.+++++++++|...++..+++ +|       ..++.....|..+...+
T Consensus        68 d~~y~~~~~~~~le~~~a~l~----g----~~~~~~~~sGt~A~~~a~~~~~~-~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          68 DEAYAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVLLK-YKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHHHH-HHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhhccChHHHHHHHHHHHHH----C----CCEEEECCCcHHHHHHHHHHHHH-HHHhcCCCCCeEEeccchhhhhHHHH
Confidence            446888888899999999987    3    57899999999999999999874 43       33566667777788788


Q ss_pred             HHcCCeEEEeecC--------CCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc-ccCCCHHHHHHHHHHHHHcC
Q 018147          233 ALHGGTLVPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEG  303 (360)
Q Consensus       233 ~~~g~~~~~v~~~--------~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT-G~~~~~~~l~~i~~la~~~~  303 (360)
                      ...|..++.+...        ....+.+|+++|++++++....  .+.++++..++|.. |.+++.+++++|.++|++||
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g  216 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG  216 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence            8889988876432        2234678999999999874221  34444544556654 35689999999999999999


Q ss_pred             CEEEEccCCCC
Q 018147          304 LVLLADEVYQE  314 (360)
Q Consensus       304 i~lI~DeaY~~  314 (360)
                      +++|+|+++..
T Consensus       217 ~~l~~D~~~~~  227 (465)
T d1ax4a_         217 IFVVMDSARFC  227 (465)
T ss_dssp             CCEEEECTTHH
T ss_pred             CEEEEECcchh
Confidence            99999999863

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.23  E-value=4.5e-11  Score=112.32  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=108.7

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCC
Q 018147          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ  224 (360)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~  224 (360)
                      ++.+.+.++...   ....++  -...|.+.+++++        ..+..+.++++|.|+.++++++--.+||+|++|.-+
T Consensus         4 ~~~~~~~l~~~~---~~~~G~--~~~~fE~~~~~~~--------~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t   70 (374)
T d1o69a_           4 LKYIEEVFKSNY---IAPLGE--FVNRFEQSVKDYS--------KSENALALNSATAALHLALRVAGVKQDDIVLASSFT   70 (374)
T ss_dssp             HHHHHHHHHHTT---TSCTTH--HHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred             HHHHHHHHhcCC---cCCCCH--HHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcc
Confidence            455666666531   122333  2688999999887        235789999999999999999843589999999999


Q ss_pred             chHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCC
Q 018147          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (360)
Q Consensus       225 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i  304 (360)
                      |+....++..+|++++.++++++. +..+.+..+....    ...++++|++.+.   .|...+   +++|.++|+++|+
T Consensus        71 ~~a~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~----~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i  139 (374)
T d1o69a_          71 FIASVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKE----CEKKPKALILTHL---YGNAAK---MDEIVEICKENDI  139 (374)
T ss_dssp             CGGGTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHH----CSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTC
T ss_pred             hHhhHHHHhhccceeEeccccccc-ccccccccccchh----ccccccccccccc---ccchhh---hHHHHHHhhccCc
Confidence            999999999999999999998542 2333333322111    1226889998766   344444   8999999999999


Q ss_pred             EEEEccCCCCC
Q 018147          305 VLLADEVYQEN  315 (360)
Q Consensus       305 ~lI~DeaY~~~  315 (360)
                      +||+|.++...
T Consensus       140 ~vIED~a~a~g  150 (374)
T d1o69a_         140 VLIEDAAEALG  150 (374)
T ss_dssp             EEEEECTTCTT
T ss_pred             chhhhhhhhhc
Confidence            99999998763

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.21  E-value=7.3e-11  Score=110.89  Aligned_cols=149  Identities=12%  Similarity=0.210  Sum_probs=116.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC--CE
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN--DG  217 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g--d~  217 (360)
                      +..+-++++.+.++..    .  |....-...|.+.+++++    |    .+.++++++++.|+.++++++...+|  |+
T Consensus        10 ~~~~~~~~v~~~l~~~----~--~~~G~~v~~fE~~~~~~~----g----~k~ai~~~Sgt~Al~~al~al~~~~~~~~e   75 (371)
T d2fnua1          10 LDKEDKKAVLEVLNSK----Q--LTQGKRSLLFEEALCEFL----G----VKHALVFNSATSALLTLYRNFSEFSADRNE   75 (371)
T ss_dssp             CCHHHHHHHHHHHTSS----C--CSSSHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred             CCHHHHHHHHHHHcCC----C--ccCCHHHHHHHHHHHHHH----C----cCeEEEEecHHHHHHHHHHHhcccCCCCCe
Confidence            3566777888877652    2  333334788888888887    2    45788999999999999999854344  48


Q ss_pred             EEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHH
Q 018147          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (360)
Q Consensus       218 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~  297 (360)
                      |++|.-+|+....++...|++++.++++.+.  .++.+.+++.+++      ++++|++.|.   -|...+   +++|.+
T Consensus        76 Vi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~------~t~avi~vh~---~G~~~~---~~~i~~  141 (371)
T d2fnua1          76 IITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQK  141 (371)
T ss_dssp             EEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHH
T ss_pred             eecccccccccceeeeccCcccccccccccc--cccchhhhhhccc------hhhccccccc---cccccc---cccccc
Confidence            9999999999999999999999999998763  4555777776665      8999988753   466666   888999


Q ss_pred             HHHHcCCEEEEccCCCCCc
Q 018147          298 FCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       298 la~~~~i~lI~DeaY~~~~  316 (360)
                      +|+++|+++|+|.++....
T Consensus       142 ~~~~~~i~lIEDaaqa~Ga  160 (371)
T d2fnua1         142 LCKKHSLSFLSDSSHALGS  160 (371)
T ss_dssp             HHHHHTCEEEEECTTCTTC
T ss_pred             cccccchhhccchhhccCc
Confidence            9999999999999987743

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3e-10  Score=109.51  Aligned_cols=168  Identities=9%  Similarity=-0.115  Sum_probs=128.2

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC---CEEEcCChHHHHHHHHHHHcc--
Q 018147          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN---DIFLTDGASPAVHMMMQLLIR--  212 (360)
Q Consensus       138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~---~I~~t~Ga~~al~~~~~~l~~--  212 (360)
                      ..+++.+.+.+.+.++..    ...+.......++.+.+.+++.+.+|.+-..+   .=.+|+|+++|+.+++.+...  
T Consensus        64 t~~~~~~~~l~~~~~~~N----~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~  139 (450)
T d1pmma_          64 TWDDENVHKLMDLSINKN----WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW  139 (450)
T ss_dssp             CCCCHHHHHHHHHTTTCB----TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcC----CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHH
Confidence            356777766666665553    22333334467899999999999888653222   248899999999888776421  


Q ss_pred             ---------CCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          213 ---------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       213 ---------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                               +....++++...+..+..+++..|++++.++.+++ ++.+|+++|++++++      ++.+|+.+.++|.|
T Consensus       140 ~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~t  212 (450)
T d1pmma_         140 RKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDE------NTIGVVPTFGVTYT  212 (450)
T ss_dssp             HHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCT------TEEEEECBBSCTTT
T ss_pred             HHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhh------CceEEEeeeeeccC
Confidence                     12234778888999999999999999999998864 479999999999987      78888988999999


Q ss_pred             ccCCCHHHHHHHHH---HHHHcCCEEEEccCCCCCc
Q 018147          284 GQVLAEENQRAIVD---FCKKEGLVLLADEVYQENV  316 (360)
Q Consensus       284 G~~~~~~~l~~i~~---la~~~~i~lI~DeaY~~~~  316 (360)
                      |.+-+.+++.+|++   .|+++|+|+++|.||++++
T Consensus       213 G~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~  248 (450)
T d1pmma_         213 GNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  248 (450)
T ss_dssp             CBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             CCccccchhhHHHHHHHHHhccCcEEEeehhhccce
Confidence            99999776555544   4677899999999998754

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=9.3e-11  Score=110.75  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=108.9

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHH----cC
Q 018147          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HG  236 (360)
Q Consensus       161 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~----~g  236 (360)
                      +.|+.. |. ..++.+.+.+....|    .+..+++++++.|+..++ .++ .+||.|++....|.+....+..    .|
T Consensus        47 y~YsR~-gn-PT~~~lE~~la~LE~----~~~a~~~sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~g  118 (393)
T d1n8pa_          47 YEYSRS-QN-PNRENLERAVAALEN----AQYGLAFSSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             CCBTTT-CC-HHHHHHHHHHHHHTT----CSEEEEESCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             eeeeCC-CC-hHHHHHHHHHHHHhC----CceEEEecCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhhhccc
Confidence            345543 23 344455555555444    456677777789997665 555 4899999999999877666555    46


Q ss_pred             CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHH----HcCCEEEEccCC
Q 018147          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK----KEGLVLLADEVY  312 (360)
Q Consensus       237 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~----~~~i~lI~DeaY  312 (360)
                      .++..++        .+.+++++++++      ++++|++-.|.||+..+.+   +++|+++|+    ++|+++|+|..|
T Consensus       119 i~~~~~~--------~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~  181 (393)
T d1n8pa_         119 VETSFTN--------DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTF  181 (393)
T ss_dssp             SCCEEES--------SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred             ceeEEee--------cchHHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCc
Confidence            6665542        145678887766      8999999999999999999   888888887    678999999999


Q ss_pred             CCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          313 QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       313 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ....+...     +     .++   -|   |+++|.+|.++|
T Consensus       182 atP~~~~P-----l-----~~G---AD---iVvhS~TKyi~G  207 (393)
T d1n8pa_         182 LSPYISNP-----L-----NFG---AD---IVVHSATKYING  207 (393)
T ss_dssp             THHHHCCG-----G-----GGT---CS---EEEEETTTTTTC
T ss_pred             cCcccCCc-----h-----hhC---CC---EEEEccccccCC
Confidence            76443321     1     122   24   899999999887

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=4.2e-10  Score=109.21  Aligned_cols=170  Identities=13%  Similarity=0.052  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHcc
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      .++.++..+...+-+..   ...|..+....++.+.+.+|+.+..|++-.       ...-++|+|++++...++.+...
T Consensus        85 ~~~~~l~~~~~~~~n~n---~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~  161 (476)
T d1js3a_          85 SYPAMLADMLCGAIGCI---GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAART  161 (476)
T ss_dssp             CHHHHHHHHHHHHHCCC---CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhccc---ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHH
Confidence            34555555443333322   334555555788999999999999987521       23468899999888777754321


Q ss_pred             ---------CCC---------CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEE
Q 018147          213 ---------SEN---------DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL  274 (360)
Q Consensus       213 ---------~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~i  274 (360)
                               ..|         -.|++++-.|..+..++...|..++.++++++  +.+|+++|++.|++..+.|..+-+|
T Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~--~~md~~~L~~~i~~~~~~g~~p~~V  239 (476)
T d1js3a_         162 KVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGK--FAMRASALQEALERDKAAGLIPFFV  239 (476)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTT--SCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCC--CCcCHHHHHHHHHHHHhcCCCcEEE
Confidence                     011         14788889999999999999999999998764  6999999999999988888777788


Q ss_pred             EEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 018147          275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (360)
Q Consensus       275 il~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~  317 (360)
                      +.+..++.||.+=+   +++|+++|++||+|+++|.+|+++..
T Consensus       240 vataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~  279 (476)
T d1js3a_         240 VATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAF  279 (476)
T ss_dssp             EEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGG
T ss_pred             eecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhh
Confidence            88889999999988   99999999999999999999988654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=1.7e-10  Score=107.13  Aligned_cols=160  Identities=13%  Similarity=0.061  Sum_probs=109.5

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcCcHHHHHHHHHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHH
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQ  208 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~--I~~t~Ga~~al~~~~~  208 (360)
                      |..+|..+|+.|++++.+    ..   .+.+++  ..-..+.|+.+++++      ++++++  +++|+|+|++++.++.
T Consensus         4 ~~pGP~~~~~~V~~A~~~----~~---~~~~~~~~~~~~~~~r~~l~~l~------~~~~~~~~i~~t~s~T~~~~~~~~   70 (361)
T d1m32a_           4 LTPGPLTTSRTVKEAMLF----DS---CTWDDDYNIGVVEQIRQQLTALA------TASEGYTSVLLQGSGSYAVEAVLG   70 (361)
T ss_dssp             CSSSSCCCCHHHHHTTCC----CC---CTTSHHHHTTTHHHHHHHHHHHH------CSSSSEEEEEEESCHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHhhh----hc---cCCCcHHHHHHHHHHHHHHHHHh------CCCCCCEEEEECCCHHHHHHHHHH
Confidence            455567788888776421    11   222221  234678888888887      455554  7788999999999999


Q ss_pred             HHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          209 LLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      .+.. +++.+++....+..  ........+.....+..........+.+.......+      +++++.+++-+|-||..
T Consensus        71 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~tG~~  143 (361)
T d1m32a_          71 SALG-PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP------TISHIAMVHSETTTGML  143 (361)
T ss_dssp             HSCC-TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT------TCCEEEEESEETTTTEE
T ss_pred             Hhhh-hccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhcc------CccceEEEeeecccccc
Confidence            9985 77777776655432  333445556666666555443222222333332322      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .+   +++|.++|+++|+++++|.++.-.
T Consensus       144 ~~---i~~i~~~~~~~g~~~~vDa~qs~G  169 (361)
T d1m32a_         144 NP---IDEVGALAHRYGKTYIVDAMSSFG  169 (361)
T ss_dssp             CC---HHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             hh---hhhhhhhhcccceeeEeecccccC
Confidence            99   899999999999999999999863

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.8e-10  Score=108.41  Aligned_cols=180  Identities=18%  Similarity=0.210  Sum_probs=127.0

Q ss_pred             CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC---------EEEEcCCCchHHHH
Q 018147          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND---------GILCPIPQYPLYSA  230 (360)
Q Consensus       160 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd---------~Vlv~~P~y~~~~~  230 (360)
                      ...|+......+|++.+++++    |    .+.+++++++++|...++.+++. +||         .|.+....|.....
T Consensus        67 d~~Y~~~~~~~~le~~~a~l~----G----~~~~~~~~sGt~A~~~a~~~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~  137 (467)
T d2v1pa1          67 DEAFSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLIK-KREQEKGLDRSKMVAFSNYFFDTTQG  137 (467)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHT----C----CSEEEEECSSTTTHHHHHHHHHH-HHHHHHCCCTTTCEEEESSCCHHHHH
T ss_pred             chhhcCCchHHHHHHHHHHHH----C----CCEEEECCCCHHHHHHHHHHHhh-ccceEecCCCCcEEEEecccccccHH
Confidence            446888888889999998886    3    46788889899999999999874 444         35566667777788


Q ss_pred             HHHHcCCeEEEeecCCC--------CCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCC-cccCCCHHHHHHHHHHHHH
Q 018147          231 SIALHGGTLVPYYLDEA--------TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQVLAEENQRAIVDFCKK  301 (360)
Q Consensus       231 ~~~~~g~~~~~v~~~~~--------~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NP-TG~~~~~~~l~~i~~la~~  301 (360)
                      .+...|+.++.++.+..        ....+|+++|++.+++...+  .+.++++.+.+|. .|.+++.+++++|.++|++
T Consensus       138 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG--GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc--ccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            88889999998876532        13468999999999875222  4566777777665 4678899999999999999


Q ss_pred             cCCEEEEccCCCCCc-cC-----CCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          302 EGLVLLADEVYQENV-YV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       302 ~~i~lI~DeaY~~~~-~~-----~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ||+++|+|+++.... +.     ..-...++.....++.. +.+   ++..|.+|++++
T Consensus       216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d---~~s~s~~K~~~~  270 (467)
T d2v1pa1         216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YAD---MLAMSAKKDAMV  270 (467)
T ss_dssp             TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCS---EEEEESSSTTCC
T ss_pred             cCCEEEEechhhhccccccccccccccCCcccccchhhcc-cCC---EEEecCCCCCCC
Confidence            999999999974210 00     00012344444333331 123   555678887765

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.02  E-value=4.1e-09  Score=98.08  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=116.8

Q ss_pred             CCCCccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 018147          126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM  205 (360)
Q Consensus       126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~  205 (360)
                      +-|+-+-+..||...|+.|++++.    ..   ..+.++.  -..++.+.+.+.+++.+|.+ +...|++++|++.+++.
T Consensus        15 ~~p~~~l~~PGP~~v~~~Vl~am~----~~---~~~hr~~--ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~   84 (377)
T d1vjoa_          15 EVPSRLLLGPGPSNAHPSVLQAMN----VS---PVGHLDP--AFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEA   84 (377)
T ss_dssp             CCCCCEECSSSCCCCCHHHHHHHS----SC---CCCTTSH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHH
T ss_pred             CCCcceeecCCCCCCCHHHHHHhC----cC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHH
Confidence            345555677788899999987752    11   1223322  23344444444444444532 34578888899999999


Q ss_pred             HHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          206 MMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      ++..+.. +|+.+++..-.+..  +.......+.....+....+.  ..+.+..+......     +++++.+++-+|.|
T Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~~~t  156 (377)
T d1vjoa_          85 TIANAVE-PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETH-----RPAILALVHAETST  156 (377)
T ss_dssp             HHHHHCC-TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHH-----CCSEEEEESEETTT
T ss_pred             HHHhccc-cccccceeeechhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcC-----cceeeeeeeeeccc
Confidence            9999985 99999888876654  334455566666666554442  45566666555543     78899999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |.+.+   +++|.++|+++|.++++|.++..
T Consensus       157 g~~~~---i~~i~~~~~~~g~~~~vDa~~~~  184 (377)
T d1vjoa_         157 GARQP---LEGVGELCREFGTLLLVDTVTSL  184 (377)
T ss_dssp             TEECC---CTTHHHHHHHHTCEEEEECTTTT
T ss_pred             eeeec---hhhhhhhhhhccceEEEecchhh
Confidence            99999   89999999999999999999865

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=98.99  E-value=2.8e-09  Score=99.76  Aligned_cols=164  Identities=10%  Similarity=0.116  Sum_probs=118.2

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQ  208 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~al~~~~~  208 (360)
                      .+-+..||...+++|++++.    ..   ..+.++.  ...++.+.+.+.+++..|.  +.. .|+++.|+|.+++.++.
T Consensus        18 ~~l~~PGP~~~~~~V~~Am~----~~---~~~hr~~--ef~~i~~~~r~~L~~ll~~--~~~~~i~~~gsgT~a~ea~~~   86 (388)
T d2ch1a1          18 KIMMGPGPSNCSKRVLTAMT----NT---VLSNFHA--ELFRTMDEVKDGLRYIFQT--ENRATMCVSGSAHAGMEAMLS   86 (388)
T ss_dssp             CBCCSSSSCCCCHHHHHHTT----SC---CCCTTCH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHH
T ss_pred             ceeeeCCCCCCCHHHHHHhC----cC---CCCCCCH--HHHHHHHHHHHHHHHHhCC--CCCeEEEEcCcHHHHHHHHHH
Confidence            34466678888999987742    11   1233332  2334444444444444453  334 46677889999999999


Q ss_pred             HHccCCCCEEEEcCCCchHH--HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccC
Q 018147          209 LLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (360)
Q Consensus       209 ~l~~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~  286 (360)
                      .+.. +|+.|++..-.+...  ...++.++...+.+...+..  ..+.+..+++....     +++++++++-+|.||..
T Consensus        87 ~l~~-~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~  158 (388)
T d2ch1a1          87 NLLE-EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELH-----QPKCLFLTHGDSSSGLL  158 (388)
T ss_dssp             HHCC-TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEE
T ss_pred             Hhcc-ccccccccccccccccchhhhhhhccccccccccccc--ccchhhhhhhhccC-----Ccceeeeeecccccccc
Confidence            9995 999999888776544  34566778888887776553  56777777776654     89999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          287 LAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       287 ~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .+   +++|.++|+++|.++++|.+..-.
T Consensus       159 ~~---~~~i~~~~~~~~~~~~vD~~ss~g  184 (388)
T d2ch1a1         159 QP---LEGVGQICHQHDCLLIVDAVASLC  184 (388)
T ss_dssp             CC---CTTHHHHHHHTTCEEEEECTTTBT
T ss_pred             cc---hhhhcchhccccceeeeeeeeccc
Confidence            99   788889999999999999998763

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=9.2e-09  Score=96.12  Aligned_cols=163  Identities=12%  Similarity=0.058  Sum_probs=113.9

Q ss_pred             CccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHHc
Q 018147          134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLI  211 (360)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~I~~t~Ga~~al~~~~~~l~  211 (360)
                      ..||...|+.|++++.    ..   ....+++  ...++.+.+.+.+++.++.  +.+++.|++|+|+|++++.++..+.
T Consensus         8 ~PGP~~v~~~V~~Am~----~~---~~~hr~~--~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~   78 (382)
T d2bkwa1           8 IPGPIILSGAVQKALD----VP---SLGHTSP--EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI   78 (382)
T ss_dssp             SSSSCCCCHHHHHTTS----CC---CCCTTSH--HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHhC----cc---cCCCCcH--HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence            3446677888877642    11   1222322  2334444455555555542  3456789999999999999999986


Q ss_pred             c--CCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCC
Q 018147          212 R--SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (360)
Q Consensus       212 ~--~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~  287 (360)
                      .  .+||+|++..-.+..  +...++..|.....+...+. +...+.+.+++.+...     +++++++++.+|.||...
T Consensus        79 ~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~  152 (382)
T d2bkwa1          79 LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLS  152 (382)
T ss_dssp             CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEEC
T ss_pred             HhcCCCCceEEEEechhhhhhhhhccccccccccccccCC-CCccchhHHHHHhhhc-----cchheeeeeccccccccc
Confidence            3  489999999876654  34556667888777654333 2367888888887663     789999999999999999


Q ss_pred             CHHHHHHHHHHHHHc--CCEEEEccCCCC
Q 018147          288 AEENQRAIVDFCKKE--GLVLLADEVYQE  314 (360)
Q Consensus       288 ~~~~l~~i~~la~~~--~i~lI~DeaY~~  314 (360)
                      +   ++++.+.|+++  ++++++|.+..-
T Consensus       153 ~---~~~~~~~~~~~~~~~~~~vDa~qs~  178 (382)
T d2bkwa1         153 D---LKAISQAIKQTSPETFFVVDAVCSI  178 (382)
T ss_dssp             C---HHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred             c---chhhhhhccccccceeeeeeccccc
Confidence            9   66666666665  599999998775

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.91  E-value=6.7e-10  Score=107.08  Aligned_cols=177  Identities=16%  Similarity=0.088  Sum_probs=105.0

Q ss_pred             CCCcCcHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHc-CCeEEE
Q 018147          164 SHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVP  241 (360)
Q Consensus       164 ~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~  241 (360)
                      .+..-+.++++.+|+++    |    .++ +++++|++.++..++.++++ +||+|+++.-+|......+..+ +..++.
T Consensus        63 ~~~~~i~eae~~~A~~~----g----a~~a~f~~~Gtt~~n~a~i~a~~~-~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~  133 (462)
T d1c4ka2          63 IHEGPAVAAEKHAARVY----N----ADKTYFVLGGSSNANNTVTSALVS-NGDLVLFDRNNHKSVYNSALAMAGGRPVY  133 (462)
T ss_dssp             TTBTHHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHHCC-TTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred             CCCHHHHHHHHHHHHHh----C----CCeEEEECCchHHHHHHHHHHhcC-CCCeEEecccchHHHHHHHHHHhcCCcee
Confidence            33333677888888886    3    344 55567777788888888884 9999999999998877655443 444443


Q ss_pred             e--ecCCCCC-c-----CCCHHHHHHHHHH---HHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          242 Y--YLDEATG-W-----GLETSEVKKQLEA---AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       242 v--~~~~~~~-~-----~~d~~~L~~~i~~---~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      .  +.++.+. .     .++.+.+++.+..   ......+++.+++.+.+|-.|.+.+   +++|+++|+++|+++++|+
T Consensus       134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~  210 (462)
T d1c4ka2         134 LQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDS  210 (462)
T ss_dssp             ECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEEC
T ss_pred             eecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEec
Confidence            3  3343211 1     2333333332211   1122334555555555566899988   9999999999999999999


Q ss_pred             CCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       311 aY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++.......+....+......... .... --+++.|+.|++++
T Consensus       211 A~~~~~~~~~~~~~~~~~~g~~~~-~~~~-~D~~~~S~HK~lg~  252 (462)
T d1c4ka2         211 AWVGYEQFIPMMRNSSPLLIDDLG-PEDP-GIIVVQSVHKQQAG  252 (462)
T ss_dssp             TTCCGGGSSGGGGGGCTTSCCCCC-TTSC-EEEEEECHHHHSSC
T ss_pred             hhhccccccCcCCcchhhcccccc-ccCC-ccEEEEecCccccc
Confidence            997643221100001000000000 0011 24789999998764

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=3.1e-08  Score=93.30  Aligned_cols=198  Identities=11%  Similarity=0.085  Sum_probs=124.7

Q ss_pred             CCCCccccCcc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +..++||+..+    ..+ -+|++++++.+.+.....   ..+.  - ..+.+..+++.+.....  ...+.+.++++++
T Consensus        35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~---~~~~--~-~~~~~~~la~~l~~~~~--~~~~~v~f~~sGs  106 (387)
T d1vefa1          35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA---MPQT--L-PTPMRGEFYRTLTAILP--PELNRVFPVNSGT  106 (387)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC---CCTT--S-CCHHHHHHHHHHHHTSC--TTEEEEEEESSHH
T ss_pred             CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc---cccc--c-CCchHHHHHHHhhhhcc--ccceeeccccCch
Confidence            34567777554    222 378999999998887432   1111  1 23456666666655422  2235799999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHc-C------------CeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-G------------GTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      +|+..+++.... .....|+...-.|.+........ |            ..+..+|.       .|.+.|++.+.+   
T Consensus       107 eA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~---  176 (387)
T d1vefa1         107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDE---  176 (387)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCT---
T ss_pred             HHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCC---
Confidence            999999887532 24567888888776543332222 1            12333332       268888888765   


Q ss_pred             cCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEE
Q 018147          267 KGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS  344 (360)
Q Consensus       267 ~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~  344 (360)
                         ++.+| |..| ..-.|.. .+++-+++|.++|++||+++|.||+..+|.-.+.  ......+  ++   .||     
T Consensus       177 ---~iAav-i~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~~~~~~--~v---~PD-----  240 (387)
T d1vefa1         177 ---ETAAV-ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAFEHF--GI---VPD-----  240 (387)
T ss_dssp             ---TEEEE-EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TC---CCS-----
T ss_pred             ---CeEEE-EEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC--CcccccC--Cc---CCc-----
Confidence               56554 4566 3334654 6678899999999999999999999999644442  3332222  22   377     


Q ss_pred             EeccCcCcccccc
Q 018147          345 FQSVSKGRYFHFF  357 (360)
Q Consensus       345 ~~S~SK~~~g~~R  357 (360)
                      +-.++|++++|.=
T Consensus       241 i~~~gK~l~gG~~  253 (387)
T d1vefa1         241 ILTLAKALGGGVP  253 (387)
T ss_dssp             EEEECGGGGTTSS
T ss_pred             eeeecccCCCCcc
Confidence            4567888888753

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=6.1e-08  Score=92.29  Aligned_cols=214  Identities=13%  Similarity=0.069  Sum_probs=120.8

Q ss_pred             CCCCccccCcc----C-CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET----Q-GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~----~-~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ++.++||+..+    . .--+|++++++.+.+.....  ...+   ....+....+|+.+.+... .-..+.++++++++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~--~~~~---~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGs  111 (425)
T d1sffa_          38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH--TCFQ---VLAYEPYLELCEIMNQKVP-GDFAKKTLLVTTGS  111 (425)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC--CCTT---TEECHHHHHHHHHHHHHSS-CSSCEEEEEESSHH
T ss_pred             CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC--cccc---cccCcHHHHHHHHHHhhhh-hcccceeeeecccc
Confidence            45667887666    2 23478999999888876431  1111   1123344556666666542 11235789999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHH-cCC-------------eEEEe--ecCCCCCcCCCHHHHHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPY--YLDEATGWGLETSEVKKQLEA  263 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~-~g~-------------~~~~v--~~~~~~~~~~d~~~L~~~i~~  263 (360)
                      +|+..+++.... ....+|+...-.|.+....... .|.             .....  +....+.+..........+..
T Consensus       112 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (425)
T d1sffa_         112 EAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK  191 (425)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHH
Confidence            999999887532 2346788888877765443332 221             11111  111111111111111111111


Q ss_pred             HHhcCCCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCce
Q 018147          264 AKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS  341 (360)
Q Consensus       264 ~~~~g~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  341 (360)
                      ......++ +.+|..| +.-.|. ..+++-+++|.++|+++|+++|.||++.++.-.+.  ...+..+     +-.||  
T Consensus       192 ~~~~~~~v-aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~--~~a~~~~-----gv~PD--  261 (425)
T d1sffa_         192 NDAAPEDI-AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAMEQM-----GVAPD--  261 (425)
T ss_dssp             HTCCGGGE-EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT-----TSCCS--
T ss_pred             hcccccce-EEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch--hhHHHhc-----CCCcc--
Confidence            11111134 4555666 333454 45778899999999999999999999998644443  2222111     12377  


Q ss_pred             EEEEeccCcCccccccc
Q 018147          342 LVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       342 ~i~~~S~SK~~~g~~Rv  358 (360)
                         +-+++|++++|.-+
T Consensus       262 ---i~~~gK~l~gG~P~  275 (425)
T d1sffa_         262 ---LTTFAKSIAGGFPL  275 (425)
T ss_dssp             ---EEEECGGGGTSSCC
T ss_pred             ---ceecccccCCCcce
Confidence               34589999988644

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2e-07  Score=88.04  Aligned_cols=195  Identities=11%  Similarity=0.092  Sum_probs=117.7

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ++..+||+..+     -.--+|++++++.+.++....  ...+....-...+.+.+++..        ..+.++++++++
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sGs  108 (404)
T d2byla1          39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL--TSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTGV  108 (404)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSHH
T ss_pred             CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCC--cccccccchHHHHHHhhhhcc--------cccccccccCcc
Confidence            35567887666     123588899999998877542  212112221233334333332        347899999999


Q ss_pred             HHHHHHHHHHcc---------CCCCEEEEcCCCchHHHHHHHHcC-------------CeEEEeecCCCCCcCCCHHHHH
Q 018147          201 PAVHMMMQLLIR---------SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLETSEVK  258 (360)
Q Consensus       201 ~al~~~~~~l~~---------~~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~L~  258 (360)
                      +|...+++....         .....|+...-.|...........             ..+..+|.       .|+++++
T Consensus       109 eA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~  181 (404)
T d2byla1         109 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALE  181 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHH
T ss_pred             ccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHH
Confidence            999999987531         123466666655553221111111             11223322       2788899


Q ss_pred             HHHHHHHhcCCCccEEEEecC-CCCcc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCC
Q 018147          259 KQLEAAKAKGITVRALVVINP-GNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P-~NPTG-~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~  336 (360)
                      +.+.+.     ++.+ +|..| ..-.| ...+++-+++|.++|+++|+++|.||+..+|.-.+.  ...+...  +   -
T Consensus       182 ~~l~~~-----~iAa-viiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~a~~~~--g---v  248 (404)
T d2byla1         182 RALQDP-----NVAA-FMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVDYE--N---V  248 (404)
T ss_dssp             HHHTST-----TEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--T---C
T ss_pred             HhcCCC-----CeEE-EEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc--cchhhhc--C---C
Confidence            888642     4544 45567 33345 445677899999999999999999999998644443  3332221  1   2


Q ss_pred             CCCceEEEEeccCcCcccc
Q 018147          337 EKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       337 ~~~~~~i~~~S~SK~~~g~  355 (360)
                      .||     +-+++|++++|
T Consensus       249 ~PD-----i~~~gK~l~gG  262 (404)
T d2byla1         249 RPD-----IVLLGKALSGG  262 (404)
T ss_dssp             CCS-----EEEECGGGGTT
T ss_pred             CCC-----EEEECchhhCC
Confidence            367     22889999887

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.66  E-value=6.3e-08  Score=92.37  Aligned_cols=211  Identities=11%  Similarity=0.029  Sum_probs=121.5

Q ss_pred             CCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ..++||+..+     -.--+|++++++.+.+..... ....+.     .+.+..+|+.+.+...  -..+.+++++++++
T Consensus        40 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~sGse  111 (431)
T d1zoda1          40 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEML-----SRPVVDLATRLANITP--PGLDRALLLSTGAE  111 (431)
T ss_dssp             CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTCC-----CHHHHHHHHHHHHHSC--TTCCEEEEESCHHH
T ss_pred             CCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc-cccccc-----cHHHHHHHHHHHHhCC--cccceeeecccccc
Confidence            4456666544     223378999999999887542 111222     2334456666655432  13578999999999


Q ss_pred             HHHHHHHHHcc-CCCCEEEEcCCCchHHHHHHHHcCC------------eEEEeecCC--C-----CCcCCCHHHHHHHH
Q 018147          202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDE--A-----TGWGLETSEVKKQL  261 (360)
Q Consensus       202 al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~v~~~~--~-----~~~~~d~~~L~~~i  261 (360)
                      |+..+++.... ...+.|+...-.|.+........+.            ....++...  .     .....+.++++...
T Consensus       112 A~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (431)
T d1zoda1         112 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF  191 (431)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHH
Confidence            99999987532 2457788888777765443332211            112222111  0     01111234444433


Q ss_pred             HHHHhcCCCccEEEEecC-CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCC
Q 018147          262 EAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (360)
Q Consensus       262 ~~~~~~g~~~k~iil~~P-~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~  339 (360)
                      ......+.+.-+.+|..| +.-.|. ..+++-+++|.++|+++|+++|.||+..++...+.  +.....+  +   -.||
T Consensus       192 ~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~--~~~~~~~--g---v~PD  264 (431)
T d1zoda1         192 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQRD--G---VTPD  264 (431)
T ss_dssp             HHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--T---CCCS
T ss_pred             HHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc--ccccccC--C---CCcc
Confidence            322222323335566667 222344 45778899999999999999999999999655543  3332221  2   2377


Q ss_pred             ceEEEEeccCcCcccccc
Q 018147          340 ISLVSFQSVSKGRYFHFF  357 (360)
Q Consensus       340 ~~~i~~~S~SK~~~g~~R  357 (360)
                           +-.++|++++|.-
T Consensus       265 -----i~~~gK~l~gG~p  277 (431)
T d1zoda1         265 -----ILTLSKTLGAGLP  277 (431)
T ss_dssp             -----EEEECHHHHTTSS
T ss_pred             -----hhccccccccccc
Confidence                 4557788887753

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.65  E-value=2.3e-07  Score=88.29  Aligned_cols=198  Identities=14%  Similarity=0.034  Sum_probs=122.0

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      +...+||+..+     -.--+|++++++.+.++...    ....+    ..+...+++.+.+..+   ..+.++++++++
T Consensus        50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~----~~~~~----~~~~~~la~~~~~~~~---~~~~v~f~~sGs  118 (427)
T d2gsaa_          50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT----SFGAP----CALENVLAEMVNDAVP---SIEMVRFVNSGT  118 (427)
T ss_dssp             TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS----CCSSC----CHHHHHHHHHHHHHST---TCSEEEEESSHH
T ss_pred             CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcC----ccccc----hhHHHHHHHHHHhhCC---ccccccccCCcH
Confidence            35567777555     12247899999998887632    11111    2455667777766543   346889999999


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEcCCCchHHHHHH--------HHcCC------------eEEEeecCCCCCcCCCHHHHHH
Q 018147          201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASI--------ALHGG------------TLVPYYLDEATGWGLETSEVKK  259 (360)
Q Consensus       201 ~al~~~~~~l~~-~~gd~Vlv~~P~y~~~~~~~--------~~~g~------------~~~~v~~~~~~~~~~d~~~L~~  259 (360)
                      +|+..+++.... .....|+...-.|.+.....        ...+.            ....++       .-|++.+++
T Consensus       119 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~  191 (427)
T d2gsaa_         119 EACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHH
Confidence            999999986532 24567888877776432111        11111            111211       237889988


Q ss_pred             HHHHHHhcCCCccEEEEecC-CCCcccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCC
Q 018147          260 QLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (360)
Q Consensus       260 ~i~~~~~~g~~~k~iil~~P-~NPTG~~-~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~  337 (360)
                      .+++.   ..++ +.+|..| ..-.|.+ .+.+-+++|.++|++||+++|.||++.++ ..+.  ......     .+-.
T Consensus       192 ~~~~~---~~~i-aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~--~~~~~~-----~gi~  259 (427)
T d2gsaa_         192 LFAEN---PGEI-AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY--GGVQEK-----FGVT  259 (427)
T ss_dssp             HHTTS---TTTE-EEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--TCHHHH-----TTCC
T ss_pred             HHHhC---CCCe-EEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc--cchHHh-----cCCC
Confidence            88642   1134 4455566 2223544 46677999999999999999999999986 3332  222221     1123


Q ss_pred             CCceEEEEeccCcCccccccc
Q 018147          338 KDISLVSFQSVSKGRYFHFFS  358 (360)
Q Consensus       338 ~~~~~i~~~S~SK~~~g~~Rv  358 (360)
                      ||     +-.++|++++|.-+
T Consensus       260 PD-----i~~~gK~lggG~p~  275 (427)
T d2gsaa_         260 PD-----LTTLGKIIGGGLPV  275 (427)
T ss_dssp             CS-----EEEECGGGGTTSCC
T ss_pred             HH-----HHhhhhccCCCcce
Confidence            77     34577888887654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=2.2e-07  Score=86.56  Aligned_cols=188  Identities=11%  Similarity=0.047  Sum_probs=120.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCC
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~g  215 (360)
                      ..++.+.++....+.+....   +...|+-..-+.++.+...+..++.+|  +.--+|-..+ ++.|...++.+|++ ||
T Consensus        34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~S-Gs~An~av~~all~-pG  109 (405)
T d1kl1a_          34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHS-GAQANMAVYFTVLE-HG  109 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCSS-HHHHHHHHHHHHCC-TT
T ss_pred             cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeeccC-chHHHHHHHHHhcC-CC
Confidence            34777777765555443211   111233333334444444455555555  2222344444 56666778888884 99


Q ss_pred             CEEEEcCCCchHHHH-----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          216 DGILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                      |+|+..++...++..     .......+.+.|+++++ ++.+|.|++++.++..     ++|+|++-.-.+|-  .++  
T Consensus       110 D~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~r--~~d--  179 (405)
T d1kl1a_         110 DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH-----RPKLIVAAASAYPR--IID--  179 (405)
T ss_dssp             CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC--
T ss_pred             CEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhh-----CcceEEeccccccc--ccC--
Confidence            999999866654321     22233578888888866 4689999999999887     89999887555553  344  


Q ss_pred             HHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          291 NQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       291 ~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                       ++++.++|++.|.+++.|.++.- ++-.+.  +++....        -|   |+..|.-|+|.|
T Consensus       180 -~~~~reIad~vga~l~~D~aH~~GLIa~g~--~~~P~~~--------aD---vvt~tThKtlrG  230 (405)
T d1kl1a_         180 -FAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNPVPY--------AH---FVTTTTHKTLRG  230 (405)
T ss_dssp             -HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCSTTT--------CS---EEEEESSSTTCC
T ss_pred             -hHHHHHHHhhhCCEEecchhhHhhhhhhhh--cCChhhh--------hh---heeccccccccC
Confidence             88899999999999999999854 444442  3332222        24   667899999876

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=1.2e-07  Score=87.81  Aligned_cols=156  Identities=11%  Similarity=0.050  Sum_probs=108.6

Q ss_pred             cCccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc
Q 018147          133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  212 (360)
Q Consensus       133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~  212 (360)
                      |..||...|++|++++.+..       .+.++  ....++.+.+.+.+++.++  .+.+.+++++|+|.+++.++..++.
T Consensus         4 ~~PGP~~v~~~V~~am~~~~-------~~hr~--~~f~~i~~~~~~~l~~ll~--~~~~~i~~~gsgT~a~e~~~~nl~~   72 (348)
T d1iuga_           4 LTPGPVRLHPKALEALARPQ-------LHHRT--EAAREVFLKARGLLREAFR--TEGEVLILTGSGTLAMEALVKNLFA   72 (348)
T ss_dssp             CSSSSCCCCHHHHHHHHSCC-------CCTTS--HHHHHHHHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCCHHHHHHhcCCC-------CCCCC--HHHHHHHHHHHHHHHHHhC--CCCCEEEEeCchHHHHHHHHHhccc
Confidence            44556678999888764211       22222  1234444445555555445  3456788899999999999999985


Q ss_pred             CCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHH
Q 018147          213 SENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (360)
Q Consensus       213 ~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~  290 (360)
                       +||+|++..-.+.  .+...++.+|.++..+......  .++++++.         ..+++.+++++..+.||...+  
T Consensus        73 -~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~--  138 (348)
T d1iuga_          73 -PGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPEDVA---------KEGYAGLLLVHSETSTGALAD--  138 (348)
T ss_dssp             -TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTTSC---------CSSCSEEEEESEETTTTEECC--
T ss_pred             -ccccceeecchHHHHHHHHHHHhcCcccccccccCCC--cccccccc---------ccCCCeeEEEecchhhhhhcc--
Confidence             9999988887754  4566778889888887765443  33333321         127889999999999999999  


Q ss_pred             HHHHHHHHHHHcC--CEEEEccCCCC
Q 018147          291 NQRAIVDFCKKEG--LVLLADEVYQE  314 (360)
Q Consensus       291 ~l~~i~~la~~~~--i~lI~DeaY~~  314 (360)
                       +++|.++|++++  .++++|.+-.-
T Consensus       139 -i~~i~~~~~~~~~~~l~~vDavss~  163 (348)
T d1iuga_         139 -LPALARAFKEKNPEGLVGADMVTSL  163 (348)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTTB
T ss_pred             -HHHHHHHHHhhhccceeechhhhcc
Confidence             888888888874  78889987664

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.7e-07  Score=86.37  Aligned_cols=186  Identities=13%  Similarity=0.040  Sum_probs=118.2

Q ss_pred             CCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCC
Q 018147          140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd  216 (360)
                      .++.+.+++...+.+....   +..-|+-.+-+.++.+...+...+.+|  +.-.+|-. .+++.|...++.+|++ |||
T Consensus        38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVqp-~SGs~AN~av~~All~-pGD  113 (416)
T d1dfoa_          38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQP-HSGSQANFAVYTALLE-PGD  113 (416)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCC-SSHHHHHHHHHHHHCC-TTC
T ss_pred             CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceeec-ccCccHHHHHHHHhcC-CCC
Confidence            4777777765555443211   111233333234444444445455555  22223444 4556777788888884 999


Q ss_pred             EEEEcCCCchHHHH-----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHH
Q 018147          217 GILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (360)
Q Consensus       217 ~Vlv~~P~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~  291 (360)
                      +|+..+....++..     .+.....+.+.++++++  ..+|.|++++..+..     ++|+|++-.-.+|  ..++   
T Consensus       114 ~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~--~~IDyd~l~~~a~~~-----kPklIi~G~S~y~--r~~d---  181 (416)
T d1dfoa_         114 TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT--GHIDYADLEKQAKEH-----KPKMIIGGFSAYS--GVVD---  181 (416)
T ss_dssp             EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS--SSBCHHHHHHHHHHH-----CCSEEEEECSSCC--SCCC---
T ss_pred             eeeeccccccccccccccccccCceEEEEecccCCc--cCccHHHHHHHHHHh-----ccceEEecccccc--cccC---
Confidence            99999987765432     12223467788888753  369999999998887     8999998755544  3455   


Q ss_pred             HHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          292 QRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       292 l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      ++++.++|.+.|.++++|.++.. ++-.+.  +++....        -|   |+..|+-|+|.|
T Consensus       182 ~~~~reiad~vga~l~~D~aH~~GLIa~g~--~~sP~~~--------aD---vvt~tThKtlrG  232 (416)
T d1dfoa_         182 WAKMREIADSIGAYLFVDMAHVAGLVAAGV--YPNPVPH--------AH---VVTTTTHKTLAG  232 (416)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCCTTT--------SS---EEEEESSSTTCC
T ss_pred             HHHHHHHHHhcCceEEcchhhhhcceeccc--cCCcccc--------cc---eeeeehhhcccC
Confidence            88899999999999999999854 333332  3332221        23   788999999876

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=6.3e-07  Score=85.25  Aligned_cols=193  Identities=15%  Similarity=0.115  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHcc------C
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S  213 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~------~  213 (360)
                      -+|++++++.+.+..........+.    .+. ...+++.+.....  ..-+.+++++++++|+..+++....      .
T Consensus        60 ~~p~i~~Ai~~q~~~~~~~~~~~~~----~~~-~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~  132 (429)
T d1s0aa_          60 NHPQLNAAMKSQIDAMSHVMFGGIT----HAP-AIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEE----CHH-HHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHhcCCcccCCcc----chH-HHHHHHHHHhhhc--cCcceeeeccccccchhhhhhhhhheeecccc
Confidence            3889999999988875320111111    122 3333444444332  3456799999999999988876531      2


Q ss_pred             CCCEEEEcCCCchHHHHHHHHc-C-------------CeEEEeecCCC-CCc---CCCHHHHHHHHHHHHhcCCCccEEE
Q 018147          214 ENDGILCPIPQYPLYSASIALH-G-------------GTLVPYYLDEA-TGW---GLETSEVKKQLEAAKAKGITVRALV  275 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~~~~~-g-------------~~~~~v~~~~~-~~~---~~d~~~L~~~i~~~~~~g~~~k~ii  275 (360)
                      ...+|+...-.|.......... +             ......|.... ...   .-+.+.+++.+...   +.++. .+
T Consensus       133 ~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ia-av  208 (429)
T d1s0aa_         133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIA-AV  208 (429)
T ss_dssp             CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEE-EE
T ss_pred             cccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccc-ee
Confidence            3457888887776543222221 1             11122221111 111   12345555544432   22454 44


Q ss_pred             EecC--CCCccc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCc
Q 018147          276 VINP--GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGR  352 (360)
Q Consensus       276 l~~P--~NPTG~-~~~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~  352 (360)
                      |..|  ++--|. ..+++-+++|.++|+++|+++|.||++.+|...+.  ...+...  +   ..||     +-.++|++
T Consensus       209 ivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~~~~~~--~---v~PD-----i~~~gK~l  276 (429)
T d1s0aa_         209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEHA--E---IAPD-----ILCLGKAL  276 (429)
T ss_dssp             EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--T---CCCS-----EEEECGGG
T ss_pred             eecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc--ccccccc--e---eccc-----cccccccc
Confidence            4555  344444 46889999999999999999999999999744443  3332211  1   2367     34567887


Q ss_pred             ccc
Q 018147          353 YFH  355 (360)
Q Consensus       353 ~g~  355 (360)
                      ++|
T Consensus       277 ~gG  279 (429)
T d1s0aa_         277 TGG  279 (429)
T ss_dssp             GTS
T ss_pred             ccc
Confidence            665

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.42  E-value=1.3e-06  Score=82.79  Aligned_cols=190  Identities=13%  Similarity=-0.004  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHHccCCC
Q 018147          140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSEN  215 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~-t~Ga~~al~~~~~~l~~~~g  215 (360)
                      .++.+.+++...+.+....   +..-|+-..-+.++.....+...+.+|...+...+-+ ..+++.|...++.+|++ ||
T Consensus        43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~-pg  121 (470)
T d1rv3a_          43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE-PH  121 (470)
T ss_dssp             CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC-TT
T ss_pred             CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcC-CC
Confidence            4777777765555433211   1222444444455555555666666664322223322 34567777788888885 99


Q ss_pred             CEEEEcCCCchHHHH----------HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCccc
Q 018147          216 DGILCPIPQYPLYSA----------SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (360)
Q Consensus       216 d~Vlv~~P~y~~~~~----------~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~  285 (360)
                      |+|+..+....++..          .+.....+.+.|++++++ ..+|.+++++..+..     ++|+|++-.-.+|  .
T Consensus       122 D~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~-~~IDyd~l~~~a~~~-----kPklIi~G~S~y~--r  193 (470)
T d1rv3a_         122 GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT-GYIDYDRLEENARLF-----HPKLIIAGTSCYS--R  193 (470)
T ss_dssp             CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT-CSBCHHHHHHHHHHH-----CCSEEEECCSSCC--S
T ss_pred             CeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc-CcccHHHHHHHHHhh-----CcceEeechhhcc--c
Confidence            999998865543321          111223578888888764 579999999998887     8999987755555  2


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       286 ~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                      .++   ++++.++|.+.|.+++.|.++.. ++-.+.  +++-...        .|   |+..|.-|+|.|
T Consensus       194 ~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sPl~~--------aD---vvt~tTHKtlrG  247 (470)
T d1rv3a_         194 NLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPFEH--------CH---VVTTTTHKTLRG  247 (470)
T ss_dssp             CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGGGT--------CS---EEEEESSGGGCC
T ss_pred             cCC---HHHHHHHHhccCCeEEecchhhhhhccccc--cCChhhe--------ee---eeeeehhhhccC
Confidence            445   88888899999999999999854 444443  4433222        24   788999999865

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.42  E-value=6.9e-07  Score=85.73  Aligned_cols=216  Identities=13%  Similarity=0.105  Sum_probs=119.0

Q ss_pred             CCCCccccCcc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 018147          126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS  200 (360)
Q Consensus       126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~  200 (360)
                      ++..+||+..+     -.--+|++++++.+.+..........+... ....+.+.+++.+.....  -.-+.++++++++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~-~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGs  127 (461)
T d1ohwa_          51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGIL-PPENFVEKLRESLLSVAP--KGMSQLITMACGS  127 (461)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTS-CBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred             CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhccccccccc-chHHHHHHHHHHHHhhhc--cCcceeeeecchh
Confidence            45667887655     123378888888765543210001111111 123455667776654322  2356899999999


Q ss_pred             HHHHHHHHHHcc---------------------------CCCCEEEEcCCCchHHHHHHHH-cCC-------------eE
Q 018147          201 PAVHMMMQLLIR---------------------------SENDGILCPIPQYPLYSASIAL-HGG-------------TL  239 (360)
Q Consensus       201 ~al~~~~~~l~~---------------------------~~gd~Vlv~~P~y~~~~~~~~~-~g~-------------~~  239 (360)
                      +|+..+++....                           .+...|+...-.|.+....... .|-             ..
T Consensus       128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~  207 (461)
T d1ohwa_         128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI  207 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred             hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence            999998876420                           1234688888787754332222 221             11


Q ss_pred             EEeecCCCC-Cc---------CCCHHHHHHHHHHHHhcCCCccEEEEecC-CCCcc-cCCCHHHHHHHHHHHHHcCCEEE
Q 018147          240 VPYYLDEAT-GW---------GLETSEVKKQLEAAKAKGITVRALVVINP-GNPTG-QVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       240 ~~v~~~~~~-~~---------~~d~~~L~~~i~~~~~~g~~~k~iil~~P-~NPTG-~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      .+.+..... .+         ..+.+++++.+........++.+ +|..| +...| ...+++-+++|.++|++||+++|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAa-vivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI  286 (461)
T d1ohwa_         208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAG-IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL  286 (461)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccce-eeeccccccccccCchhhHHHHHHHHHHhhCccee
Confidence            111110000 00         01245556655543333334544 44555 43345 44677889999999999999999


Q ss_pred             EccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCcccc
Q 018147          308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYFH  355 (360)
Q Consensus       308 ~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~  355 (360)
                      .||++.++.-.+.  +..+..+  ++. ..||     +-.++|++++|
T Consensus       287 ~DEV~tG~gRtG~--~~~~e~~--gi~-~~PD-----iv~~gK~l~~g  324 (461)
T d1ohwa_         287 VDEVQTGGGSTGK--FWAHEHW--GLD-DPAD-----VMTFSKKMMTG  324 (461)
T ss_dssp             EECTTTCSSTTSS--SSGGGGG--CCS-SCCS-----EEEECGGGSSE
T ss_pred             ccccccccccccc--ccccccc--ccc-cCch-----hhhhhhccccc
Confidence            9999999755443  3333221  111 1256     22778988765

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.40  E-value=9.8e-08  Score=88.27  Aligned_cols=168  Identities=12%  Similarity=0.070  Sum_probs=108.2

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH-HH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HM  205 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al-~~  205 (360)
                      ..+|+.||...|+.|++++.+.+.+..+.  +....++ +.-..++.+.+.+.+++.++.+ +..+|++++|++.+. ..
T Consensus         4 ~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea   82 (361)
T d2c0ra1           4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAM   82 (361)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHH
T ss_pred             CcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHH
Confidence            34677778889999999998766543210  1111121 2224455566666666666642 334688877765554 55


Q ss_pred             HHHHHccCCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          206 MMQLLIRSENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       206 ~~~~l~~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      +...+. .+|+.+++..-...  .+...++..|..+..+..+...  ..+++.+++.+..       .+.+.   .+|.|
T Consensus        83 ~~~~l~-~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~---v~~~t  149 (361)
T d2c0ra1          83 IPMNFL-KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQ-------DNAAY---LHLTS  149 (361)
T ss_dssp             HHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCC-------TTEEE---EEEES
T ss_pred             HHhccc-cCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhccc-------CcceE---EEEec
Confidence            555666 58888876654332  4566778889988888776553  4556666654432       23333   35678


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |...+   +++|.++|+++|+++++|.+-.-
T Consensus       150 g~~~~---~~~i~~~~~~~~al~~vDavss~  177 (361)
T d2c0ra1         150 NETIE---GAQFKAFPDTGSVPLIGDMSSDI  177 (361)
T ss_dssp             EETTT---TEECSSCCCCTTSCEEEECTTTT
T ss_pred             cccee---cceEEEeeccCCceEEEEeeccc
Confidence            88888   66778899999999999999865

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.36  E-value=4.4e-06  Score=78.58  Aligned_cols=200  Identities=10%  Similarity=0.044  Sum_probs=108.7

Q ss_pred             CCCccccCcc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 018147          127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP  201 (360)
Q Consensus       127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~  201 (360)
                      ...+||+..+    .. --+|++++++.+.++....  ...+.    .....+.+++.+....+    .+.+.++.++++
T Consensus        38 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~  107 (404)
T d1z7da1          38 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF----FSVPLGICERYLTNLLG----YDKVLMMNTGAE  107 (404)
T ss_dssp             CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS----EEHHHHHHHHHHHHHHT----CSEEEEESSHHH
T ss_pred             CCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCC--ccccc----chHHHHHHHHhhhhccc----cceeeeeccccc
Confidence            4556776655    11 2388999999988876432  11111    22233444555544433    467889999999


Q ss_pred             HHHHHHHHHcc---------CCCCEEEEcCCCchHHHHHHHHcCCe-E---EEeecCCCCCc---CCCHHHHHHHHHHHH
Q 018147          202 AVHMMMQLLIR---------SENDGILCPIPQYPLYSASIALHGGT-L---VPYYLDEATGW---GLETSEVKKQLEAAK  265 (360)
Q Consensus       202 al~~~~~~l~~---------~~gd~Vlv~~P~y~~~~~~~~~~g~~-~---~~v~~~~~~~~---~~d~~~L~~~i~~~~  265 (360)
                      +...+++....         .....++...-.|............. .   ...|.... .+   .-+.+.++..+.+  
T Consensus       108 a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--  184 (404)
T d1z7da1         108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQ-FSKVPYDDLEALEEELKD--  184 (404)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------C-EEEECTTCHHHHHHHHTS--
T ss_pred             hHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcc-ccccccchHHHHHHHhcC--
Confidence            99988876431         12235777776666543322222110 0   01111000 00   1145666655533  


Q ss_pred             hcCCCccEEEEecC-CCCcccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCCCCHHHHHHhhCCCCCCceEE
Q 018147          266 AKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (360)
Q Consensus       266 ~~g~~~k~iil~~P-~NPTG~~~-~~~~l~~i~~la~~~~i~lI~DeaY~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i  343 (360)
                         .++ +.+|..| +...|.+. +++-+++|.++|+++|+++|.||+..+|.-.+.  ...+...  +   ..||    
T Consensus       185 ---~~i-Aavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~--~~~~e~~--g---v~PD----  249 (404)
T d1z7da1         185 ---PNV-CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVHHY--N---VKPD----  249 (404)
T ss_dssp             ---TTE-EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--T---CCCS----
T ss_pred             ---CCE-EEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc--ccccccc--C---CCCC----
Confidence               144 4555567 44456654 556689999999999999999999998644443  3332211  2   2377    


Q ss_pred             EEeccCcCcccc
Q 018147          344 SFQSVSKGRYFH  355 (360)
Q Consensus       344 ~~~S~SK~~~g~  355 (360)
                       +-+++|++++|
T Consensus       250 -ivt~gK~l~gG  260 (404)
T d1z7da1         250 -VILLGKALSGG  260 (404)
T ss_dssp             -EEEECGGGGTT
T ss_pred             -EEEEcccccCC
Confidence             23889999876

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.36  E-value=1.2e-07  Score=87.22  Aligned_cols=165  Identities=11%  Similarity=0.027  Sum_probs=100.2

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCCC--CCCCCC-Cc----CcHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGRA--TGAYSH-SQ----GIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASP  201 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~--~~~Y~~-~~----G~~~lr~~ia~~l~~~~g~~~~~~-~I~~t~Ga~~  201 (360)
                      +.+|+.+|...|++|++++.+.+.+....+  ....++ +.    -+.+.|+.+++++    +  ++.+ .|++++|+++
T Consensus         4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~----~--~~~~~~i~~~~gt~~   77 (360)
T d1w23a_           4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----Q--IPNDYQILFLQGGAS   77 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHH
T ss_pred             eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----C--CCCCCEEEEeCCcHH
Confidence            456777788889999999987665432101  111111 11    1344566666665    4  3334 5888888887


Q ss_pred             HHHHHHHHHccCCCCEEEEcCCCch--HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecC
Q 018147          202 AVHMMMQLLIRSENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (360)
Q Consensus       202 al~~~~~~l~~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P  279 (360)
                      +...+.......+++.|++....+.  .+...++..+...+........  ..+++.+++...       .....   +-
T Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~---~~  145 (360)
T d1w23a_          78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQL-------NENDA---YL  145 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCC-------CTTEE---EE
T ss_pred             HHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhccc-------ccccc---ee
Confidence            7776665555457888887765544  3445556666666665544322  222233332211       22333   33


Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 018147          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (360)
Q Consensus       280 ~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~~  315 (360)
                      .|-||.+.+   +++|.++|+++|+++|+|.+-.-.
T Consensus       146 ~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g  178 (360)
T d1w23a_         146 HITSNNTIY---GTQYQNFPEINHAPLIADMSSDIL  178 (360)
T ss_dssp             EEESEETTT---TEECSSCCCCCSSCEEEECTTTTT
T ss_pred             EecCCcccc---ceeeeeccccceeeEEeecccccc
Confidence            566888888   778889999999999999998763

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.32  E-value=2.3e-06  Score=80.85  Aligned_cols=190  Identities=13%  Similarity=0.042  Sum_probs=105.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHHccC
Q 018147          139 LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRS  213 (360)
Q Consensus       139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~I~~t~Ga~~al~~~~~~l~~~  213 (360)
                      ..++.+.+++...+.+....   +..-|+-.+-+.++.....+...+.++.....-  +|-.-+ ++.|...++.+|++ 
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~S-Gs~An~av~~all~-  115 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS-GSPANLAVYTALLQ-  115 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHCC-
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccc-cHHHHHHHHHHHcC-
Confidence            34777777765544433211   112233333355555555555555566332111  344444 56677778888884 


Q ss_pred             CCCEEEEcCCCchHHHHH--------HHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCc
Q 018147          214 ENDGILCPIPQYPLYSAS--------IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (360)
Q Consensus       214 ~gd~Vlv~~P~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPT  283 (360)
                      |||+|+..++...++..-        +...|  .+.+.|.++++ +..+|.+++++..+..     ++|+|++-.-.+|-
T Consensus       116 pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r  189 (463)
T d2a7va1         116 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR  189 (463)
T ss_dssp             SCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS
T ss_pred             CCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhc-----CCceEEeccccccc
Confidence            999999888776655311        11122  34556666654 3579999999999887     89999977555552


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCCCCHHHHHHhhCCCCCCceEEEEeccCcCccc
Q 018147          284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGRYF  354 (360)
Q Consensus       284 G~~~~~~~l~~i~~la~~~~i~lI~DeaY~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  354 (360)
                        .++   ++++.++|.+.|.+++.|.++.. ++-.+.  +++....        .|   |+..|.-|+|.|
T Consensus       190 --~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sP~~~--------aD---vvt~tTHKTlrG  243 (463)
T d2a7va1         190 --LID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPFKH--------AD---IVTTTTHKTLRG  243 (463)
T ss_dssp             --CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGGGT--------CS---EEEEESSGGGCS
T ss_pred             --ccC---HHHHHHHhhcccceEEechhhhhHHhhhhh--hcChhhh--------hh---hhhchhhhhhcC
Confidence              444   88888999999999999998843 444443  4443322        24   777899999875

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.4e-07  Score=84.79  Aligned_cols=167  Identities=14%  Similarity=0.032  Sum_probs=100.4

Q ss_pred             ccccCccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-Cc----CcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 018147          130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQ----GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA  202 (360)
Q Consensus       130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~----G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~a  202 (360)
                      +.||+.+|...|+.|++++.+.+.+....  +....++ +.    -+.+.|+.+++++    +.+ +.+.|++++|++++
T Consensus         2 ~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~~~-~~~~v~~~~gs~t~   76 (360)
T d1bjna_           2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----NVP-SNYKVLFCHGGGRG   76 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHH
T ss_pred             eEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCC-CCCEEEEECCchHH
Confidence            45777788899999999998866543210  1111121 11    1345555555555    421 23468888888776


Q ss_pred             HHHHHHHHccCCCCEEEEcCCCchH--HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCC
Q 018147          203 VHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (360)
Q Consensus       203 l~~~~~~l~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~  280 (360)
                      ...+.......+++.|++..-.+..  +....+..|..++.+....+.  ..+.+.+++.+..      +++++++++.+
T Consensus        77 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~v~v~~~~  148 (360)
T d1bjna_          77 QFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQL------SDNAAYMHYCP  148 (360)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCC------CSSCSCEEECS
T ss_pred             HHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--Ccchhhhhhhhcc------CCceeEEEecc
Confidence            6665554443577888877766553  344445556655555443332  2333444443333      78888888889


Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       281 NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      |-||...+.   +++  .++.+++++++|.+.+-
T Consensus       149 ~~t~~~~~~---~~i--~~~~~~~~v~vDa~~~~  177 (360)
T d1bjna_         149 NETIDGIAI---DET--PDFGADVVVAADFSSTI  177 (360)
T ss_dssp             EETTTTEEC---CCC--CCCCTTCCEEEECTTTT
T ss_pred             cccccCccc---cce--ecccccceeeeeeeccc
Confidence            999988773   333  24567899999987765

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.0023  Score=59.94  Aligned_cols=132  Identities=21%  Similarity=0.251  Sum_probs=90.5

Q ss_pred             CCCCCC--CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH----HH
Q 018147          160 TGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IA  233 (360)
Q Consensus       160 ~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~----~~  233 (360)
                      .+.|.|  ++|..++.-.+..++.+.-|.+  .-+.-.-.|++.....++.+......+++++..-.++.+...    ++
T Consensus        95 ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd--~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~  172 (437)
T d1wyua1          95 YTPYQPEVSQGVLQATFEYQTMIAELAGLE--IANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLE  172 (437)
T ss_dssp             CSCCSGGGCHHHHHHHHHHHHHHHHHHTSS--EECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhCCC--ccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcc
Confidence            334554  6787777777788887776754  223444567776665555443223567899999888876554    45


Q ss_pred             HcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 018147          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (360)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~De  310 (360)
                      ..|.+++.++.++.   ..+.++    +.+      ++.+|++.+|+. .|.+-   ++++|++++++.|.+++.|.
T Consensus       173 ~~g~~vv~v~~~~~---~~~~~~----~~~------~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~a  232 (437)
T d1wyua1         173 AVGAKLLTLPLEGG---RTPLPE----VGE------EVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAVA  232 (437)
T ss_dssp             HTTCEEEEECCBTT---BCCCCC----CCT------TEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEEC
T ss_pred             cceeeEEeeecccc---cchhhh----hcc------ceeEEEEccccc-ccccc---chHHHHHHhhhccceEEeee
Confidence            57999999998754   223222    222      788999999964 67763   48999999999999877763

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.082  Score=49.45  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCCCC---CcCcHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHc--cCC
Q 018147          140 FSADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSE  214 (360)
Q Consensus       140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~I~~t~Ga~~al~~~~~~l~--~~~  214 (360)
                      ++|.+++.+.+.    . ...+.|.|   ++|..+..=.....+.+.-|.++  -+.-.-.|++.....++.+..  +..
T Consensus        77 y~P~v~~~~~~~----~-TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv--aNaS~yDGatA~aeA~~ma~r~~~~~  149 (471)
T d1wyub1          77 YNPKLHEEAARL----F-ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDR  149 (471)
T ss_dssp             CCCHHHHHHHHT----T-SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcchhhhHHHH----H-hccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc--cccccchHHHHHHHHHHHHHHHhhhc
Confidence            466677665432    1 14667776   66765554445555555556442  333445666654443333221  012


Q ss_pred             C-----CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCH
Q 018147          215 N-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (360)
Q Consensus       215 g-----d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~  289 (360)
                      |     ..++++......+.......+..++.++.+..+  ..+.+.+......      ++.++++.+|++.-+..   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~a~v~v~~p~~~g~~e---  218 (471)
T d1wyub1         150 GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEG--EVDLEALKRELGP------HVAALMLTNPNTLGLFE---  218 (471)
T ss_dssp             TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTS--SBCHHHHHHHCST------TEEEEEECSSCTTSCCC---
T ss_pred             ccccccccccCCcccccceeeeeecccceeecccccccc--cccchhhhhhhhc------cccceeeccCCCccccc---
Confidence            2     223444444455666667778888888876543  6788888776654      67888989998764433   


Q ss_pred             HHHHHHHHHHHHcCCEEEEccCCCC
Q 018147          290 ENQRAIVDFCKKEGLVLLADEVYQE  314 (360)
Q Consensus       290 ~~l~~i~~la~~~~i~lI~DeaY~~  314 (360)
                      ++.+++++++++.+..+++|-+--.
T Consensus       219 ~~~~~~~~~~h~~g~~~~~~~~~~~  243 (471)
T d1wyub1         219 RRILEISRLCKEAGVQLYYDGANLN  243 (471)
T ss_dssp             TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred             chhhhhHHHHHhccccccccccchh
Confidence            2477888888998887777755433

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.59  E-value=0.51  Score=39.60  Aligned_cols=101  Identities=15%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++.+|++.+|- .+.+.|. ..|..|++.+-.-.......+..+.+...+.+|-.     |.+++++.+++..++..+
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVT-----QPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecC-----CHHHHHHHHHHHHHHhCC
Confidence            3444445555554 4445566 48999998876655666677777777877777633     678888888776555445


Q ss_pred             ccEEEEecCCCCcccC--CCHHHHHHHHHH
Q 018147          271 VRALVVINPGNPTGQV--LAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P~NPTG~~--~~~~~l~~i~~l  298 (360)
                      +.+++-+-...+.+..  ++.++|+++.++
T Consensus        81 idilinnAG~~~~~~~~~~~~~~~~~~~~v  110 (244)
T d1nffa_          81 LHVLVNNAGILNIGTIEDYALTEWQRILDV  110 (244)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred             CeEEEECCcccCCCchhhCCHHHHhHHhhc
Confidence            6655533223333333  467788877764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.23  E-value=1.1  Score=37.45  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             CCEEEcCChHHHHHHH-HHHHccCCCCEEEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHMM-MQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~-~~~l~~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      +.+++.+|++.+|-.. .+.|. ..|..|++.+-.-.....   .++..|.++..+.+|-     -|.+++++.++...+
T Consensus        10 nKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv-----t~~~~v~~~~~~~~~   83 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDV-----SKKEEISEVINKILT   83 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHH
Confidence            4566665666666544 44566 489999888755444333   3445678888888764     378888888887666


Q ss_pred             cCCCccEEEEecCCCCcc--cCCCHHHHHHHHHH
Q 018147          267 KGITVRALVVINPGNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       267 ~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~l  298 (360)
                      +..++..++-+-...+.+  .-++.++|+++.++
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~v  117 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRT  117 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred             hcCCceeeeeccccccccccccccHHHHhhhhee
Confidence            655677555443332222  23466788887764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.06  E-value=0.73  Score=38.42  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             CCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      ..+++|.|+..-=..+.+.|.. .|-+|++..-.-......++.+|.++..+.+|-.     +.+.+++.++...++..+
T Consensus         6 K~alItGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVAALEAEAIAVVADVS-----DPKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCceEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence            4456666555444556667774 8999998876666677777888988888887643     678888877766555446


Q ss_pred             ccEEEEecCCCCccc--CCCHHHHHHHHHH
Q 018147          271 VRALVVINPGNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P~NPTG~--~~~~~~l~~i~~l  298 (360)
                      +..++-+....+.+.  -++.++|++..++
T Consensus        80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~  109 (241)
T d2a4ka1          80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRV  109 (241)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred             ccEeccccccccccchhhhhcccccccccc
Confidence            766665433222232  3466777766654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.98  E-value=0.93  Score=38.04  Aligned_cols=100  Identities=16%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++.+|++.+|- .+.+.|. ..|..|++.+-.-.......+..+.+...+.+|-     -|.+++++.++...++..+
T Consensus         7 K~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeec-----CCHHHHHHHHHHHHHHhCC
Confidence            3444445555554 4445566 4899999888665666677777888888877763     3677777777766554446


Q ss_pred             ccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          271 VRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      +..++ +|. ....+.  -++.++|+++.++
T Consensus        81 iDilV-nnAG~~~~~~~~~~~~~~~~~~~~v  110 (253)
T d1hxha_          81 LNVLV-NNAGILLPGDMETGRLEDFSRLLKI  110 (253)
T ss_dssp             CCEEE-ECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred             CCeEE-ecccccCCCCcccCCHHHHHHHHHH
Confidence            66555 444 233232  3467788877764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.68  E-value=1.4  Score=36.72  Aligned_cols=100  Identities=20%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             CCEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          191 NDIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       191 ~~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      .-+++|.| +.+|- .+.+.|. ..|-.|++.+-.-....    ...+..|.++..+.+|-.     |.+++++.++...
T Consensus         6 K~~lITGa-s~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~   78 (251)
T d1vl8a_           6 RVALVTGG-SRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS-----NYEEVKKLLEAVK   78 (251)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred             CEEEEeCC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHHHHHH
Confidence            34455554 45554 4455566 48999988775443333    233556888888877643     6788887777655


Q ss_pred             hcCCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          266 AKGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       266 ~~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ++..++..+| +|. ..+.+-  -++.++|+++.++
T Consensus        79 ~~~g~iDiLV-nnAG~~~~~~~~~~~~e~~~~~~~v  113 (251)
T d1vl8a_          79 EKFGKLDTVV-NAAGINRRHPAEEFPLDEFRQVIEV  113 (251)
T ss_dssp             HHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHcCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHh
Confidence            5434666555 444 333333  2577888887774

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.26  E-value=0.94  Score=38.05  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|++.-=..+.+.|.+ .|-.|++.+-.-......++..|.++..+.+|-.     |.+++++.++...++..++
T Consensus         7 ~alVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVR-EGARVAIADINLEAARATAAEIGPAACAIALDVT-----DQASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH-TTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCC-----CHHHHHHHHHHHHHHhCCc
Confidence            355555544333445556664 8989988876656677777888888888887743     6788888887765554467


Q ss_pred             cEEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          272 RALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       272 k~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      ..++ +|. .++.+  .-++.++|+++.++
T Consensus        81 DilV-nnAg~~~~~~~~~~~~~~~~~~~~v  109 (256)
T d1k2wa_          81 DILV-NNAALFDLAPIVEITRESYDRLFAI  109 (256)
T ss_dssp             CEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cEEE-eecccccccccccCCHHHHHhhhce
Confidence            6554 444 22222  23467788777663

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.22  E-value=1.3  Score=36.77  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=59.5

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|++.-=..+.+.|.. .|-.|++.+-.-.......+..+.+.+.+++       -|.+++++.++...++..++
T Consensus         7 ~~lITGas~GIG~aia~~l~~-~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAK-EGARLVACDIEEGPLREAAEAVGAHPVVMDV-------ADPASVERGFAEALAHLGRL   78 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTTCEEEECCT-------TCHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCeEEEEec-------CCHHHHHHHHHHHHHhcCCc
Confidence            345555544333445556664 8999998876666666667767776654433       26778887777655543456


Q ss_pred             cEEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          272 RALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       272 k~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      ..++ +|. .++.+  .-++.++|+++.++
T Consensus        79 DilV-nnAG~~~~~~~~~~~~~~~~~~~~v  107 (242)
T d1ulsa_          79 DGVV-HYAGITRDNFHWKMPLEDWELVLRV  107 (242)
T ss_dssp             CEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             eEEE-ECCcccccCchhhCcchhhhccccc
Confidence            6544 444 22222  23677888888774

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=1.5  Score=36.67  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++.+|++.+|-. +.+.|. ..|-.|++.+-.-....   ..++..|.++..+.+|-.     |.+++++.++...++
T Consensus        12 K~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs-----~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-----SEQELSALADFAISK   85 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence            45555555556644 445566 48989888774433333   334556888888887643     677888777765554


Q ss_pred             CCCccEEEEecC--CCCcccCCCHHHHHHHHHH
Q 018147          268 GITVRALVVINP--GNPTGQVLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P--~NPTG~~~~~~~l~~i~~l  298 (360)
                      ..++..++ +|.  ..+.-.-++.++|+++.++
T Consensus        86 ~g~iDilv-nnAG~~~~~~~e~~~e~~~~~~~v  117 (255)
T d1fmca_          86 LGKVDILV-NNAGGGGPKPFDMPMADFRRAYEL  117 (255)
T ss_dssp             HSSCCEEE-ECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             cCCCCEee-eCCcCCCCCcccCCHHHHHHHHHH
Confidence            34676554 554  2233334678889888774

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.80  E-value=1.3  Score=37.19  Aligned_cols=99  Identities=15%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++|.| +.+| ..+.+.|.. .|-.|++.+-.-......++..|.++..+.+|-.     |.+++++.++...++..+
T Consensus         7 ~alVTGa-s~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           7 TVIITGG-ARGLGAEAARQAVA-AGARVVLADVLDEEGAATARELGDAARYQHLDVT-----IEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeCc-CCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCceEEEEcccC-----CHHHHHHHHHHHHHHcCC
Confidence            3555554 4455 445556664 8999998876656667777778888888877643     678888887766554446


Q ss_pred             ccEEEEecCC-CCcc--cCCCHHHHHHHHHH
Q 018147          271 VRALVVINPG-NPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P~-NPTG--~~~~~~~l~~i~~l  298 (360)
                      +..+| +|.. .+.+  .-++.++|+++.++
T Consensus        80 iDilV-nnAg~~~~~~~~~~~~~~~~~~~~v  109 (254)
T d1hdca_          80 VDGLV-NNAGISTGMFLETESVERFRKVVEI  109 (254)
T ss_dssp             CCEEE-ECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred             ccEEE-ecCccccccccccccccccchhhhH
Confidence            66554 5442 2212  34567788887763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=1.9  Score=35.76  Aligned_cols=100  Identities=18%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCC
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~  270 (360)
                      .+++.+|++.+|- .+.+.|. ..|..|++.+-.-.......+..+.+...+.+|-     -|.+++++.++...++..+
T Consensus         5 K~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENGAQAISDYLGANGKGLMLNV-----TDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHTCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEe-----cCHHHhhhhhhhhhcccCC
Confidence            3444444455554 4555666 4899999887665566666777777777777663     3678888888776666556


Q ss_pred             ccEEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          271 VRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       271 ~k~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      +..++ +|. ..+.+  .-++.++|+++.++
T Consensus        79 iDilV-nnAg~~~~~~~~~~~~~~~~~~~~v  108 (243)
T d1q7ba_          79 VDILV-NNAGITRDNLLMRMKDEEWNDIIET  108 (243)
T ss_dssp             CSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cceeh-hhhhhccccccccccccccccccce
Confidence            77655 544 22222  23467788777663

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.41  E-value=2.6  Score=34.86  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             EEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          193 IFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       193 I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      |++.+|++.+|-. +.+.|. ..|-.|++..-.-.    .....++..|.++..+.+|-.     |.+++++.++...++
T Consensus         3 V~lITGas~GIG~a~a~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   76 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLG-KAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS-----KEADVEAMMKTAIDA   76 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-----CHHHHHHHHHHHHHH
Confidence            5555555566644 444566 48988877532222    233445667889988887743     788888888776666


Q ss_pred             CCCccEEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          268 GITVRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      ..++..++ +|. .++.+  .-++.++|+++.++
T Consensus        77 ~g~iDiLV-nnAg~~~~~~~~~~~~~~~~~~~~v  109 (244)
T d1edoa_          77 WGTIDVVV-NNAGITRDTLLIRMKKSQWDEVIDL  109 (244)
T ss_dssp             SSCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cCCCCccc-cccccccccchhccchHHHHHHHhh
Confidence            55677555 444 22222  23577888888774

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.04  E-value=1.7  Score=36.31  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHH----HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      .+++|.| +.+|- .+.+.|.+ .|-.|++.+-.-....    ...+..|.++..+.+|-.     |.+++++.++...+
T Consensus        11 ~alITGa-s~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~   83 (260)
T d1h5qa_          11 TIIVTGG-NRGIGLAFTRAVAA-AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVS-----NTDIVTKTIQQIDA   83 (260)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHH-TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             EEEEeCC-CCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCC-----CHHHHHHHHHHHHH
Confidence            3455554 45554 44556664 8888888775544333    334456888888887643     78888888877666


Q ss_pred             cCCCccEEEEecC-CCCcc--cCCCHHHHHHHHHH
Q 018147          267 KGITVRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       267 ~g~~~k~iil~~P-~NPTG--~~~~~~~l~~i~~l  298 (360)
                      +..++..++ +|. .++.+  .-++.++|+++.++
T Consensus        84 ~~g~iDilV-nnAg~~~~~~~~~~~~~~~~~~~~~  117 (260)
T d1h5qa_          84 DLGPISGLI-ANAGVSVVKPATELTHEDFAFVYDV  117 (260)
T ss_dssp             HSCSEEEEE-ECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred             HhCCCcEec-ccccccccCCHHHhccccccccccc
Confidence            555676554 444 22222  23577888877663

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.92  E-value=1.5  Score=36.57  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .|++.+|++.+|-. +.+.|.+ .|-.|++.+-.-....   ..++..|.++..+.+|-.     |.+++++.++...++
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   75 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS-----DRDQVFAAVEQARKT   75 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-----CHHHHHHHHHHHHHH
Confidence            35454555555544 4455664 8889888764433332   334556888888887743     788888888876665


Q ss_pred             CCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          268 GITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ..++..++ +|. .++.+.  -++.++|+++.++
T Consensus        76 ~g~iDilV-nnAG~~~~~~~~~~~~~~~~~~~~v  108 (255)
T d1gega_          76 LGGFDVIV-NNAGVAPSTPIESITPEIVDKVYNI  108 (255)
T ss_dssp             TTCCCEEE-ECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred             hCCccEEE-ecccccccCcHHHhhhhhhhhhhhh
Confidence            55676555 443 344443  3477888887774

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.84  E-value=1.5  Score=36.68  Aligned_cols=100  Identities=18%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .|.+.+|++.+|-. +...|. ..|-.|++.+-.-....   ..++..|.++..+.+|-.     |.+++++.++...++
T Consensus         3 KValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs-----~~~~v~~~~~~~~~~   76 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVR-----SVPEIEALVAAVVER   76 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecC-----CHHHHHHHHHHHHHH
Confidence            36555555566644 444566 48989988775543333   334556888888887743     788888888876666


Q ss_pred             CCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          268 GITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ..++..++ +|. ....+.  -++.++|+++.++
T Consensus        77 ~g~iDilV-nnAG~~~~~~~~~~~~e~~~~~~~v  109 (257)
T d2rhca1          77 YGPVDVLV-NNAGRPGGGATAELADELWLDVVET  109 (257)
T ss_dssp             TCSCSEEE-ECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred             hCCCCEEE-ecccccCCCChHHcCHHHHHHHHHH
Confidence            55676555 544 222232  2577888887764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.77  E-value=1.6  Score=36.32  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=63.7

Q ss_pred             CCEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCC-chHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          191 NDIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQ-YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       191 ~~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~-y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      +.+++.+|++.+|- .+.+.|. ..|-.|++.+-. -......++..|.++..+.+|-.     |.+++++.++...++.
T Consensus         5 gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs-----~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS-----QPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCC-----CHHHHHHHHHHHHHHc
Confidence            34555555556664 4455666 488888876632 23455667778988888887743     6788888877665554


Q ss_pred             CCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          269 ITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       269 ~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      .++..++ +|. .++.+.  -++.++|+++.++
T Consensus        79 G~iDilV-nnAG~~~~~~~~~~~~e~~~~~~~v  110 (247)
T d2ew8a1          79 GRCDILV-NNAGIYPLIPFDELTFEQWKKTFEI  110 (247)
T ss_dssp             SCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             CCCCEEE-ECCCCCCCCChHhCCHHHhhhhhee
Confidence            4676554 544 334332  3577888887763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=1.6  Score=36.59  Aligned_cols=102  Identities=14%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHH---HHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          191 NDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASI---ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       191 ~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~---~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      +.+++.+|++.+| ..+...|.+ .|-.|++.+-.-.......   +..|  .+++.+.+|-.     |.+++++.++..
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls-----~~~~v~~~v~~~   83 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS-----NEEDILSMFSAI   83 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTT-----CHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCC-----CHHHHHHHHHHH
Confidence            3455555555555 445555664 8999988875544444433   3333  57777777643     678888887776


Q ss_pred             HhcCCCccEEEEecCCCCcccC--CCHHHHHHHHHH
Q 018147          265 KAKGITVRALVVINPGNPTGQV--LAEENQRAIVDF  298 (360)
Q Consensus       265 ~~~g~~~k~iil~~P~NPTG~~--~~~~~l~~i~~l  298 (360)
                      .++..++..+|-|-...+.+..  ++.++|++..++
T Consensus        84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~  119 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNV  119 (257)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred             HHhcCCCCEEEecccccCCCccccccHHHHHhhhhh
Confidence            6554467766544333333333  567778776663

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.00  E-value=2.8  Score=35.05  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      .+++.+|++.+|- .+.+.|.+ .|-.|++..-.-.    .....++..|.++..+.+|-.     |.+++++.++...+
T Consensus         8 K~alITGas~GIG~aia~~la~-~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt-----~~~~v~~~~~~~~~   81 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFAT-EKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVT-----VESDVINLVQSAIK   81 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence            3444444445554 45556664 8888888764432    233445667889888887743     67888887776555


Q ss_pred             cCCCccEEEEecC-CC-C-cccCCCHHHHHHHHHH
Q 018147          267 KGITVRALVVINP-GN-P-TGQVLAEENQRAIVDF  298 (360)
Q Consensus       267 ~g~~~k~iil~~P-~N-P-TG~~~~~~~l~~i~~l  298 (360)
                      +..++..++ +|. .. + .-.-++.++|+++.++
T Consensus        82 ~~G~iDiLV-nnAG~~~~~~~~~~~~~~~~~~~~v  115 (261)
T d1geea_          82 EFGKLDVMI-NNAGLENPVSSHEMSLSDWNKVIDT  115 (261)
T ss_dssp             HHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HhCCCCEee-ccceecCCcchhhcCHHHHHHHHHH
Confidence            444676555 444 21 2 1223678888887763

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.55  E-value=2.1  Score=35.65  Aligned_cols=101  Identities=10%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             CCEEEcCChHHHHHHH-HHHHccCCCCEEEEcCCCchHHHHHHHHc--CCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          191 NDIFLTDGASPAVHMM-MQLLIRSENDGILCPIPQYPLYSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~~-~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      +.+++.+|++.+|-.. .+.|. ..|..|++.+-.-.......+..  +.++..+.+|-     -|.+++++.++...++
T Consensus         6 gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS-----SDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccC-----CCHHHHHHHHHHHHHH
Confidence            3455555666666444 45566 48999998876544444444443  45667776663     3678888877766554


Q ss_pred             CCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          268 GITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ..++..+| +|. .++.+.  -++.++|+++.++
T Consensus        80 ~G~iDiLV-nnAg~~~~~~~~~~~~~~~~~~~~v  112 (251)
T d1zk4a1          80 FGPVSTLV-NNAGIAVNKSVEETTTAEWRKLLAV  112 (251)
T ss_dssp             HSSCCEEE-ECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred             hCCceEEE-eccccccccchhcccccchhhhccc
Confidence            44676554 444 334343  3467888887773

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Hypothetical protein PH1257
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.03  E-value=3.1  Score=34.24  Aligned_cols=100  Identities=17%  Similarity=0.198  Sum_probs=67.2

Q ss_pred             EEEcCChHHHHHHHHHHHccCCCCEEE--------------EcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHH
Q 018147          193 IFLTDGASPAVHMMMQLLIRSENDGIL--------------CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (360)
Q Consensus       193 I~~t~Ga~~al~~~~~~l~~~~gd~Vl--------------v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~  258 (360)
                      +++-+|+..+...+..+..  .|-+|.              ...+........++..|..++.++...+  +.-..+++.
T Consensus         7 ~vl~SGGKDS~lAl~~a~~--~G~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~--~e~~~~~l~   82 (226)
T d2d13a1           7 AVLYSGGKDSNYALYWALK--SGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGE--KEKEVEDLK   82 (226)
T ss_dssp             EEECCSSHHHHHHHHHHHH--TTCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--C--TTSHHHHHH
T ss_pred             EEEecCcHHHHHHHHHHHH--cCCeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCc--chHHHHHHH
Confidence            4667899998888777663  343432              2222333455677888999887776543  233466677


Q ss_pred             HHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEE
Q 018147          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (360)
Q Consensus       259 ~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~  308 (360)
                      +++++.     ++..++       +|.+.+......+-++|.+.|+..+.
T Consensus        83 ~~l~~~-----~v~~vv-------~Gdi~~~~~r~r~e~~c~~~gl~~~~  120 (226)
T d2d13a1          83 NVLEGL-----KVDGIV-------AGALASRYQKERIENVARELGLKVYT  120 (226)
T ss_dssp             HHHHTB-----CCSEEE-------CCCSSCHHHHHHHHHHHHHHTCEEEC
T ss_pred             HHHHhc-----CccceE-------ecceecHHHHHHHHhhHHhcCcEEEe
Confidence            666553     677777       89999999999999999999987663

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.32  E-value=6.5  Score=32.55  Aligned_cols=103  Identities=11%  Similarity=0.000  Sum_probs=60.2

Q ss_pred             CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHH---HHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       188 ~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      ++-..+++|.|+..-=..+...|.+ .|-.|++.+-.-...   ...++..+..+..+.+|-.     +.+++++.++..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s-----~~~~~~~~~~~~   77 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLL-----SRTERDKLMQTV   77 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecC-----CHHHHHHHHHHH
Confidence            4445566666554333444456664 888988877543332   3345556788877777643     678888777665


Q ss_pred             HhcC-CCccEEEEecC-CCCcccC--CCHHHHHHHHH
Q 018147          265 KAKG-ITVRALVVINP-GNPTGQV--LAEENQRAIVD  297 (360)
Q Consensus       265 ~~~g-~~~k~iil~~P-~NPTG~~--~~~~~l~~i~~  297 (360)
                      .++- ..+. ++++|. ..+.+.+  ++.++|+++.+
T Consensus        78 ~~~~~g~id-ilinnag~~~~~~~~~~~~~~~~~~~~  113 (258)
T d1ae1a_          78 AHVFDGKLN-ILVNNAGVVIHKEAKDFTEKDYNIIMG  113 (258)
T ss_dssp             HHHTTSCCC-EEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred             HHHhCCCcE-EEeccccccccCccccCCHHHHhhhhh
Confidence            5442 2344 444444 3333333  47778877665

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=4.7  Score=33.37  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=60.2

Q ss_pred             CCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       189 ~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      +-..+++|.|++.-=..+.+.|.+ .|-.|++.+-.-.......+..+ ....+.+|-     -|.+++++.++...++.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~~~-~~~~~~~Dv-----s~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVN-SGARVVICDKDESGGRALEQELP-GAVFILCDV-----TQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT-TEEEEECCT-----TSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhcC-CCeEEEccC-----CCHHHHHHHHHHHHHhc
Confidence            334456665554433445556664 89999888755444444444443 456666653     36788888887765554


Q ss_pred             CCccEEEEecCC-C-Cccc--CCCHHHHHHHHHH
Q 018147          269 ITVRALVVINPG-N-PTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       269 ~~~k~iil~~P~-N-PTG~--~~~~~~l~~i~~l  298 (360)
                      .++..++ +|.. . +.+.  -++.++|+++.++
T Consensus        78 g~iDilV-nnAG~~~~~~~~~~~~~~~~~~~~~v  110 (250)
T d1ydea1          78 GRLDCVV-NNAGHHPPPQRPEETSAQGFRQLLEL  110 (250)
T ss_dssp             SCCCEEE-ECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             CCCCEEE-ecccccccccccccccHHHHHHHHHH
Confidence            4566544 5552 3 2332  3677888888764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.15  E-value=2  Score=36.13  Aligned_cols=101  Identities=11%  Similarity=0.071  Sum_probs=59.9

Q ss_pred             CCEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          191 NDIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       191 ~~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      .+|.+.+|++.+|-. +.+.|.+..|..|++..-.-......   ++..|.++..+.+|-.     |.+.+++.++...+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs-----~~~sv~~~~~~~~~   77 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDID-----DLQSIRALRDFLRK   77 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecC-----CHHHHHHHHHHHHH
Confidence            578777777777754 44556532488888887655544433   3445777777777643     67888877776655


Q ss_pred             cCCCccEEEEecCC-CC--cccCCCHHHHHHHHH
Q 018147          267 KGITVRALVVINPG-NP--TGQVLAEENQRAIVD  297 (360)
Q Consensus       267 ~g~~~k~iil~~P~-NP--TG~~~~~~~l~~i~~  297 (360)
                      +..++.+ +|+|.. ..  .-...+.+++++..+
T Consensus        78 ~~g~iDi-LVnNAGi~~~~~~~~~~~~~~~~~~~  110 (275)
T d1wmaa1          78 EYGGLDV-LVNNAGIAFKVADPTPFHIQAEVTMK  110 (275)
T ss_dssp             HHSSEEE-EEECCCCCCCTTCCSCHHHHHHHHHH
T ss_pred             hcCCcEE-EEEcCCcCCCCCcccCCHHHHHHHHH
Confidence            5446764 445552 11  122233456665544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.09  E-value=5.6  Score=32.92  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=60.0

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCch-HHHH----HHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYP-LYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~-~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      .+++.+|++.+|-. +.+.|. ..|-.|++..-.-. ....    ..+..|.++..+++|-.     |.+++++.++...
T Consensus         5 K~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~   78 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS-----KGEAVRGLVDNAV   78 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTT-----SHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHH
Confidence            34444555555544 445566 48989988775432 2222    22445888888887743     6788888887665


Q ss_pred             hcCCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          266 AKGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       266 ~~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ++..++..+| +|. ..+.+.  -++.++|+++.++
T Consensus        79 ~~~G~iDiLV-nnAG~~~~~~~~~~~~~~~~~~~~v  113 (260)
T d1x1ta1          79 RQMGRIDILV-NNAGIQHTALIEDFPTEKWDAILAL  113 (260)
T ss_dssp             HHHSCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHhCCCcEEE-eecccccCCchhhhhHHhhhhhhhc
Confidence            5544676555 444 232332  3577888887764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.77  E-value=3.8  Score=34.90  Aligned_cols=101  Identities=9%  Similarity=0.150  Sum_probs=60.0

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHHHHHHH--------cCCeEEEeecCCCCCcCCCHHHHHHHHH
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYSASIAL--------HGGTLVPYYLDEATGWGLETSEVKKQLE  262 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~--------~g~~~~~v~~~~~~~~~~d~~~L~~~i~  262 (360)
                      .+++.+|++.+|-. +.+.|.. .|-.|++.+-.-.......+.        .|.++..+.+|-.     |.+++++.++
T Consensus        13 KvalITGas~GIG~aia~~la~-~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs-----~~~~v~~~~~   86 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLE-LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR-----NEEEVNNLVK   86 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT-----CHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCC-----CHHHHHHHHH
Confidence            44444455555544 4456664 898999887654444443332        3678888887743     6788888887


Q ss_pred             HHHhcCCCccEEEEecCCCCcc--cCCCHHHHHHHHHH
Q 018147          263 AAKAKGITVRALVVINPGNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       263 ~~~~~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~l  298 (360)
                      ...++..++.++|-+-..++.+  .-++.++|+++.++
T Consensus        87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~v  124 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLET  124 (297)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcc
Confidence            7655444566555332222222  22467888887664

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.68  E-value=5.1  Score=33.23  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=61.0

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCchHHH---HHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++.+|++.+|-. +.+.|.. .|-.|++.+-.-....   ..++..|.++..+.+|-.     |.+++++.++...++
T Consensus         6 K~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   79 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAE-EGTAIALLDMNREALEKAEASVREKGVEARSYVCDVT-----SEEAVIGTVDSVVRD   79 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence            34444445555544 4456664 8999988775433333   334456888888887743     678888887765554


Q ss_pred             CCCccEEEEecCCC-Cccc--CCCHHHHHHHHHH
Q 018147          268 GITVRALVVINPGN-PTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       268 g~~~k~iil~~P~N-PTG~--~~~~~~l~~i~~l  298 (360)
                      ..++..++-+...+ +.+.  -++.++|+++.++
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~v  113 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTI  113 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccc
Confidence            34566555332223 4443  3578888888774

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.52  E-value=4.3  Score=33.59  Aligned_cols=100  Identities=14%  Similarity=0.036  Sum_probs=58.1

Q ss_pred             CCEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCc-h---HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          191 NDIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQY-P---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       191 ~~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y-~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      .-+++|. ++.+|- .+...|.+ .|-.|++..-.- .   .....++..|.++..+++|-.     |.+++++.++...
T Consensus         7 K~alITG-as~GIG~aia~~la~-~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~-----~~~~v~~~~~~~~   79 (259)
T d1ja9a_           7 KVALTTG-AGRGIGRGIAIELGR-RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADIS-----KPSEVVALFDKAV   79 (259)
T ss_dssp             CEEEETT-TTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred             CEEEEeC-CCCHHHHHHHHHHHH-cCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCC-----CHHHHHHHHHHHH
Confidence            3445555 455554 44455664 888887643222 2   234456667889998888744     6778877776655


Q ss_pred             hcCCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          266 AKGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       266 ~~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ++..++.+++ +|. ..+.+.  ..+.++|+++.+.
T Consensus        80 ~~~g~idili-nnag~~~~~~~~~~~~~~~~~~~~~  114 (259)
T d1ja9a_          80 SHFGGLDFVM-SNSGMEVWCDELEVTQELFDKVFNL  114 (259)
T ss_dssp             HHHSCEEEEE-CCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHcCCCcEEE-eccccccccccccchHHHHHHHHhh
Confidence            4443555444 444 333332  2466777776653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.06  E-value=7.5  Score=32.13  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=58.7

Q ss_pred             CCCCCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHH
Q 018147          188 ADPNDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEA  263 (360)
Q Consensus       188 ~~~~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~  263 (360)
                      ++-..+++|.| +.+| ..+.+.|. ..|-.|++.+-.-......   +...+.++..+.+|-.     |.+++++.++.
T Consensus         6 LkgK~alVTGa-s~GIG~aiA~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~   78 (259)
T d1xq1a_           6 LKAKTVLVTGG-TKGIGHAIVEEFA-GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDAS-----LRPEREKLMQT   78 (259)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCC-----CHHHHHHHHHH
Confidence            33344555554 4555 44555666 4898998877554444433   3345677888777643     67777777766


Q ss_pred             HHhc-CCCccEEEEecCCCCccc--CCCHHHHHHHHHH
Q 018147          264 AKAK-GITVRALVVINPGNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       264 ~~~~-g~~~k~iil~~P~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ..++ +.++.+++-+-...+.+.  -++.++|+++.++
T Consensus        79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~v  116 (259)
T d1xq1a_          79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHIST  116 (259)
T ss_dssp             HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHH
T ss_pred             HHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHH
Confidence            5443 235665554433222222  3467888887764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=7.6  Score=31.85  Aligned_cols=100  Identities=12%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             CEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhc
Q 018147          192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK  267 (360)
Q Consensus       192 ~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  267 (360)
                      .+++.+|++.+| ..+...|. ..|..|++.+-.-......   ++..|.++..+.+|-.     |.+.+++.++...++
T Consensus         8 kv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs-----~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS-----NREDIYSSAKKVKAE   81 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-----CHHHHHHHHHHHHHH
Confidence            344444455555 44555566 4899999988765544333   4556788888888743     788888888776665


Q ss_pred             CCCccEEEEecCCCCcccCC--CHHHHHHHHH
Q 018147          268 GITVRALVVINPGNPTGQVL--AEENQRAIVD  297 (360)
Q Consensus       268 g~~~k~iil~~P~NPTG~~~--~~~~l~~i~~  297 (360)
                      ..++..++.|......+...  +.++++++.+
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~  113 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFE  113 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHH
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcc
Confidence            55677666444333333322  3344555544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.47  E-value=6.3  Score=32.63  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=59.1

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHHHHHHH-----cCCeEEEeecCCCCCcCCCHHHHHHHHHHHH
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIAL-----HGGTLVPYYLDEATGWGLETSEVKKQLEAAK  265 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~-----~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  265 (360)
                      .+++.+|++.+|- .+.+.|. ..|-.|++.+-.-.......+.     .+.++..+.+|-.     |.+++++.++...
T Consensus         5 K~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~   78 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS-----DEAQVEAYVTATT   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCC-----CHHHHHHHHHHHH
Confidence            3444445555554 4445566 4898998877544333332221     3567888877643     6788888777665


Q ss_pred             hcCCCccEEEEecCC--CCcccC--CCHHHHHHHHHH
Q 018147          266 AKGITVRALVVINPG--NPTGQV--LAEENQRAIVDF  298 (360)
Q Consensus       266 ~~g~~~k~iil~~P~--NPTG~~--~~~~~l~~i~~l  298 (360)
                      ++..++..+ ++|-.  .+.+..  ++.++|+++.++
T Consensus        79 ~~~G~iDiL-VnnAG~~~~~~~~~~~~~~~~~~~~~v  114 (258)
T d1iy8a_          79 ERFGRIDGF-FNNAGIEGKQNPTESFTAAEFDKVVSI  114 (258)
T ss_dssp             HHHSCCSEE-EECCCCCCCCBCGGGSCHHHHHHHHHH
T ss_pred             HHhCCCCEE-EECCcccccCCchhhhhhhHHHHHhhh
Confidence            543456654 45542  344433  578889888774

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.21  E-value=5.2  Score=33.32  Aligned_cols=101  Identities=13%  Similarity=0.069  Sum_probs=61.6

Q ss_pred             CEEEcCChHHHHHH-HHHHHccCCCCEEEEcCCCch----HHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHh
Q 018147          192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (360)
Q Consensus       192 ~I~~t~Ga~~al~~-~~~~l~~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  266 (360)
                      .+++.+|++.+|-. +.+.|.. .|-.|++..-.-.    .....++..|.++..+.+|-.     |.+++.+.++...+
T Consensus        19 K~~lITGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~-----~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGR-RGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVG-----VVEDIVRMFEEAVK   92 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCC-----CHHHHHHHHHHHHH
Confidence            46666666666644 4455664 8988887654432    233445667888888877643     78888888876655


Q ss_pred             cCCCccEEEEecCCCCcc--cCCCHHHHHHHHHH
Q 018147          267 KGITVRALVVINPGNPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       267 ~g~~~k~iil~~P~NPTG--~~~~~~~l~~i~~l  298 (360)
                      +..++..++.+...++.+  .-.+.++++++.+.
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~  126 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTI  126 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhh
Confidence            444566555443333333  23466777777653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.37  E-value=10  Score=31.25  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             CCCCCEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHH---HHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHH
Q 018147          188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (360)
Q Consensus       188 ~~~~~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  264 (360)
                      ++-.-+++|.|+..-=..+.+.|.+ .|-.|++.+-.-......   ++..|.++..+.+|-.     |.+++++.++..
T Consensus         6 L~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~   79 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLS-----SRSERQELMNTV   79 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCC-----CHHHHHHHHHHH
Confidence            4444456665554333445556664 888998877544443333   3445778888777633     678888877765


Q ss_pred             Hhc-CCCccEEEEecCC-CCcc--cCCCHHHHHHHHHH
Q 018147          265 KAK-GITVRALVVINPG-NPTG--QVLAEENQRAIVDF  298 (360)
Q Consensus       265 ~~~-g~~~k~iil~~P~-NPTG--~~~~~~~l~~i~~l  298 (360)
                      .++ +.++.++ ++|.. .+.+  .-++.++|+++.++
T Consensus        80 ~~~~~~~idil-vnnAG~~~~~~~~~~~~e~~~~~~~v  116 (259)
T d2ae2a_          80 ANHFHGKLNIL-VNNAGIVIYKEAKDYTVEDYSLIMSI  116 (259)
T ss_dssp             HHHTTTCCCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHHhCCCceEE-EECCceeccCccccCCHHHHHHHHhc
Confidence            444 3355555 45542 2222  34567888887764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.98  E-value=7.1  Score=32.08  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=56.8

Q ss_pred             CCEEEcCChHHHH-HHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCC
Q 018147          191 NDIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (360)
Q Consensus       191 ~~I~~t~Ga~~al-~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~  269 (360)
                      ..+++|. ++.+| ..+.+.|. ..|-.|++.+-.-. -...++..+...+.+++       -|.+++++.++...++..
T Consensus         6 K~alITG-as~GIG~aia~~la-~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           6 KGVLVTG-GARGIGRAIAQAFA-REGALVALCDLRPE-GKEVAEAIGGAFFQVDL-------EDERERVRFVEEAAYALG   75 (248)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHH-HTTCEEEEEESSTT-HHHHHHHHTCEEEECCT-------TCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeC-CCCHHHHHHHHHHH-HCCCEEEEEECCHH-HHHHHHHcCCeEEEEeC-------CCHHHHHHHHHHHHHhcC
Confidence            3455555 44555 44555666 48999988775432 34556667777655433       267777777776555544


Q ss_pred             CccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          270 TVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       270 ~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ++..++ +|. .++.+.  -++.++|+++.++
T Consensus        76 ~iDiLV-nnAG~~~~~~~~~~~~e~~~~~~~v  106 (248)
T d2d1ya1          76 RVDVLV-NNAAIAAPGSALTVRLPEWRRVLEV  106 (248)
T ss_dssp             CCCEEE-ECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred             CCCeEE-EeCcCCCCCChhhCCHHHHHHHHHh
Confidence            666554 544 222232  3467888887764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.90  E-value=7.6  Score=32.18  Aligned_cols=101  Identities=10%  Similarity=0.043  Sum_probs=59.5

Q ss_pred             CEEEcCChHHHHH-HHHHHHccCCCCEEEEcCCCchHHHHHHHHcC--CeEEEeecCCCCCcCCCHHHHHHHHHHHHhcC
Q 018147          192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKG  268 (360)
Q Consensus       192 ~I~~t~Ga~~al~-~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g  268 (360)
                      .+++.+|++.+|- .+.+.|. ..|..|++.+-.-.......+..+  ..+..+.+|-     -|.+++++.++...++.
T Consensus         7 KvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDV-----TKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccC-----CCHHHHHHHHHHHHHHc
Confidence            3444445555554 4445666 489999988766555555555543  2355565553     36788888887765554


Q ss_pred             CCccEEEEecC-CCCc---ccCCCHHHHHHHHHH
Q 018147          269 ITVRALVVINP-GNPT---GQVLAEENQRAIVDF  298 (360)
Q Consensus       269 ~~~k~iil~~P-~NPT---G~~~~~~~l~~i~~l  298 (360)
                      .++..++-+.- ..+.   -...+.++|+++.++
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~v  114 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDI  114 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHH
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHH
Confidence            46766654432 2222   235577888887763

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.60  E-value=4.3  Score=34.05  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             CEEEcCChHHHHHHHHHHHccCCCCEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCc
Q 018147          192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV  271 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~~~l~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~  271 (360)
                      .+++|.|++.-=..+...|.+ .|-.|++.+-.-.......+.+|.++..+.+|-.     +.+.+++.++...++..++
T Consensus         7 ~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVA-EGAKVAVLDKSAERLAELETDHGDNVLGIVGDVR-----SLEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCCeeEEecccc-----cHHHHHHHHHHHHHHhCCc
Confidence            355555544333445556664 8999998876655566667777888888877643     6777777776654443356


Q ss_pred             cEEE
Q 018147          272 RALV  275 (360)
Q Consensus       272 k~ii  275 (360)
                      ..++
T Consensus        81 dilv   84 (276)
T d1bdba_          81 DTLI   84 (276)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            5444

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.56  E-value=3.4  Score=33.99  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             CEEEcCChHHHHHHHH-HHHccCCCCE-------EEEcCCCchHHHH---HHHHcCCeEEEeecCCCCCcCCCHHHHHHH
Q 018147          192 DIFLTDGASPAVHMMM-QLLIRSENDG-------ILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQ  260 (360)
Q Consensus       192 ~I~~t~Ga~~al~~~~-~~l~~~~gd~-------Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~  260 (360)
                      +|++.+|++.+|-..+ +.|.+ .|-.       |++.+-.-.....   .++..|.++..+.+|-.     |.+++++.
T Consensus         2 ~VvlITGas~GIG~aia~~la~-~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt-----~~~~v~~~   75 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADIS-----DMADVRRL   75 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTT-----SHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-hCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-----CHHHHHHH
Confidence            5666666666665443 44543 5532       5554443333332   34446888888887743     78888888


Q ss_pred             HHHHHhcCCCccEEEEecC-CCCccc--CCCHHHHHHHHHH
Q 018147          261 LEAAKAKGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (360)
Q Consensus       261 i~~~~~~g~~~k~iil~~P-~NPTG~--~~~~~~l~~i~~l  298 (360)
                      ++...++..++..++ +|. .++.+.  -++.++|+++.++
T Consensus        76 ~~~~~~~~g~iDilv-nnAg~~~~~~~~~~~~~~~~~~~~v  115 (240)
T d2bd0a1          76 TTHIVERYGHIDCLV-NNAGVGRFGALSDLTEEDFDYTMNT  115 (240)
T ss_dssp             HHHHHHHTSCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcceee-cccccccCCccccCCHHHHhhcCCE
Confidence            887766655677555 544 222222  2467888887773

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.50  E-value=0.85  Score=40.56  Aligned_cols=67  Identities=12%  Similarity=0.278  Sum_probs=50.2

Q ss_pred             HHHHHHHcCCeEEEeecCCCCCcCCCHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Q 018147          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (360)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI  307 (360)
                      +.+.+..++.++..+.+.++.+|.+..+.+.+.-+..      .        -+|.+..++++|+++|++.|+++||-||
T Consensus        23 ~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~g------a--------~~~~~~~yT~~d~~elv~yA~~rgI~vI   88 (362)
T d2gjxa1          23 TLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKG------S--------YNPVTHIYTAQDVKEVIEYARLRGIRVL   88 (362)
T ss_dssp             HHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHH------S--------SCTTTSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHcCCcEEEEEEEcCCCceeccCCCchhhhcC------C--------cCCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence            4456667789999999988888888765554433221      1        1466778999999999999999999877


Q ss_pred             E
Q 018147          308 A  308 (360)
Q Consensus       308 ~  308 (360)
                      -
T Consensus        89 P   89 (362)
T d2gjxa1          89 A   89 (362)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=80.74  E-value=7.3  Score=29.77  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             HHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHHccCCC-CEEEEcCCCchHHHHHHHHcCCeEEEeecCCCCCcCCCHH
Q 018147          178 AGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (360)
Q Consensus       178 ~~l~~~~g~~~~~~~I~~-t~Ga~~al~~~~~~l~~~~g-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  255 (360)
                      ++..+.+| .++..+|++ +.|.+.  ..++..|.. .| ..|.+...+..-....++.+|.++.            +++
T Consensus        13 ~la~~~~~-~l~~~~ilviGaG~~g--~~v~~~L~~-~g~~~i~v~nRt~~ka~~l~~~~~~~~~------------~~~   76 (159)
T d1gpja2          13 ELAERELG-SLHDKTVLVVGAGEMG--KTVAKSLVD-RGVRAVLVANRTYERAVELARDLGGEAV------------RFD   76 (159)
T ss_dssp             HHHHHHHS-CCTTCEEEEESCCHHH--HHHHHHHHH-HCCSEEEEECSSHHHHHHHHHHHTCEEC------------CGG
T ss_pred             HHHHHHhC-CcccCeEEEECCCHHH--HHHHHHHHh-cCCcEEEEEcCcHHHHHHHHHhhhcccc------------cch
Confidence            34444445 455566654 555444  345555553 45 4799999888777777787776653            235


Q ss_pred             HHHHHHHHHHhcCCCccEEEEecCCCCcccCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 018147          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY  312 (360)
Q Consensus       256 ~L~~~i~~~~~~g~~~k~iil~~P~NPTG~~~~~~~l~~i~~la~~~~i~lI~DeaY  312 (360)
                      ++.+.+.       ...+|+.+... | -.+++.+.++...+.-+...-++|+|-+.
T Consensus        77 ~~~~~l~-------~~Divi~atss-~-~~ii~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          77 ELVDHLA-------RSDVVVSATAA-P-HPVIHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             GHHHHHH-------TCSEEEECCSS-S-SCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             hHHHHhc-------cCCEEEEecCC-C-CccccHhhhHHHHHhcccCCCeEEEeecC
Confidence            6666665       36667666442 1 23578777776655332234578999653